HHSEARCH alignment of GI: 254780444 and SCOP domain: d1jt6a1

Alignment

Probab=90.59  E-value=0.47  Score=23.91  Aligned_cols=38  Identities=8%  Similarity=0.052  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             589999999999996499---98899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      ++++|.++--.|..+.|+   |-.++|+++|++++++.++.
T Consensus         2 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F   42 (71)
T d1jt6a1           2 LKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHF   42 (71)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999999999999859140679999998785875998888

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Multidrug binding protein QacR
species: Staphylococcus aureus [TaxId: 1280]