HHSEARCH alignment of GI: 254780444 and SCOP domain: d1pb6a1

Alignment

Probab=90.66  E-value=0.38  Score=24.51  Aligned_cols=38  Identities=18%  Similarity=0.102  Sum_probs=30.9

Q ss_pred             CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             589999999999996499---98899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      ++++|.++--.+..++|+   |-.++|+.+|++++++.++.
T Consensus         5 rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F   45 (72)
T d1pb6a1           5 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYF   45 (72)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999999999999859250679999998697867999888

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Hypothetical transcriptional regulator YcdC
species: Escherichia coli [TaxId: 562]