HHSEARCH alignment of GI: 254780444 and SCOP domain: d1y9qa1

Alignment

Probab=98.91  E-value=2.9e-09  Score=77.10  Aligned_cols=68  Identities=12%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             5899999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF   77 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~   77 (223)
                      -.+.|+.+|+.+|+++|+||.+||+++|++++++++|++|..     .|+.+.+.++|+++++++++|.....
T Consensus         5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~-----~p~~~~l~~ia~~l~v~~~~l~~~~~   72 (79)
T d1y9qa1           5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGES-----SPTIATLWKIASGLEASFSAFFANDP   72 (79)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCS-----CCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             999999999999998299999999987711648999986998-----99999999999998987999838996

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Probable transcriptional regulator VC1968, N-terminal domain
domain: Probable transcriptional regulator VC1968, N-terminal domain
species: Vibrio cholerae [TaxId: 666]