HHSEARCH alignment of GI: 254780444 and SCOP domain: d2d6ya1

Alignment

Probab=90.63  E-value=0.22  Score=26.10  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             589999999999996499---98899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      |+++|.++--++..++|+   |..++|+++|++++++.++.
T Consensus         3 tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F   43 (68)
T d2d6ya1           3 TKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYY   43 (68)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999999999999859250679999988784662898887

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Putative regulator SCO4008
species: Streptomyces coelicolor [TaxId: 1902]