HHSEARCH alignment of GI: 254780444 and SCOP domain: d2fq4a1

Alignment

Probab=91.63  E-value=0.26  Score=25.57  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             5589999999999996499---98899998289987988997
Q gi|254780444|r    4 FSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         4 ~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      -+++.|..+.-.+..+.|+   |-.++|+++|++++++.++.
T Consensus         4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F   45 (69)
T d2fq4a1           4 ETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWW   45 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             999999999999999839240779999999785887999998

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Transcriptional regulator BC3163
species: Bacillus cereus [TaxId: 1396]