HHSEARCH alignment of GI: 254780444 and SCOP domain: d2g7ga1

Alignment

Probab=91.70  E-value=0.12  Score=27.69  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             CCHHHHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             55899999-9999999649998899998289987988997
Q gi|254780444|r    4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         4 ~~~~~i~~-~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~   42 (223)
                      |++++|.+ +++-+.++-++|-.++|+.+|++++++.++.
T Consensus         1 l~R~~Il~aa~~l~~~~G~~ti~~Ia~~agvs~~~iY~~F   40 (65)
T d2g7ga1           1 LDRERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHA   40 (65)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf             9899999999999978679789999988570613131158

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Putative transcriptional regulator Rha04620
species: Rhodococcus sp. rha1 [TaxId: 101510]