HHSEARCH alignment of GI: 254780444 and SCOP domain: d2g7sa1

Alignment

Probab=92.30  E-value=0.18  Score=26.64  Aligned_cols=38  Identities=11%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf             58999999999999649---998899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~   42 (223)
                      |+++|.++-.++..++|   +|-.++|+++|++++++.++.
T Consensus         5 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F   45 (74)
T d2g7sa1           5 KADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHF   45 (74)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf             99999999999999859150679999998781841698888

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Putative transcriptional regulator Atu0279
species: Agrobacterium tumefaciens [TaxId: 358]