HHSEARCH alignment of GI: 254780444 and SCOP domain: d2gfna1

Alignment

Probab=91.00  E-value=0.32  Score=25.00  Aligned_cols=38  Identities=16%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             589999999999996499---98899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      ++++|.++--++..+.|+   |-.++|+.+|++++++.++.
T Consensus         7 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F   47 (77)
T d2gfna1           7 RRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYF   47 (77)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999999999999859040579999998788877998888

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Probable transcriptional regulator RHA1 ro04631
species: Rhodococcus sp. rha1 [TaxId: 101510]