HHSEARCH alignment of GI: 254780444 and SCOP domain: d2o38a1

Alignment

Probab=98.82  E-value=8.9e-09  Score=73.95  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             589999999999996499988999982899879889975157887557798999998732187521000011
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP   76 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~   76 (223)
                      ..-+|+..|.++|+++||||.+||+++|+++++|++|++|.    .+.|+.++|.+++++++++++++....
T Consensus         8 ~k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~----~~~~~~~~L~~ia~~Lg~~i~~~~~~~   75 (89)
T d2o38a1           8 TKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYK----LEGFSVERLMTLLNALDQDVEIVIRKK   75 (89)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC----CTTCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHCCCCHHHEECCC
T ss_conf             99999999999999959999999999973370899998499----789868999999999099888701578

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: NE1354
domain: Hypothetical protein RPA3824
species: Rhodopseudomonas palustris [TaxId: 1076]