HHSEARCH alignment of GI: 254780444 and SCOP domain: d2r1jl1

Alignment
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=98.89  E-value=1.6e-09  Score=78.72  Aligned_cols=63  Identities=16%  Similarity=0.177  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99999999999649998899998289987988997515788755779899999873218752100001
Q gi|254780444|r    8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL   75 (223)
Q Consensus         8 ~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~   75 (223)
                      .|+.+|+++|+++|+||.+||+++|++++++++|++|..     .|+.+.+.++|++++++++||+.+
T Consensus         3 ~ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~-----~p~~~~l~~ia~~l~v~~~~Ll~g   65 (66)
T d2r1jl1           3 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSET-----EPNGENLLALSKALQCSPDYLLKG   65 (66)
T ss_dssp             CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSS-----CCBHHHHHHHHHHTTSCHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf             999999999998599999999997989999999986998-----999999999999969889998467


SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: P22 C2 repressor, DNA-binding domain
species: Salmonella bacteriophage P22 [TaxId: 10754]