Query gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 223
No_of_seqs 143 out of 2241
Neff 9.8
Searched_HMMs 13730
Date Wed Jun 1 05:24:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780444.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jhfa2 b.87.1.1 (A:73-198) Le 99.8 3.9E-19 2.8E-23 141.0 13.3 118 89-221 3-123 (126)
2 d1f39a_ b.87.1.1 (A:) lambda r 99.8 2.4E-19 1.8E-23 142.4 12.1 86 134-221 2-93 (101)
3 d1umua_ b.87.1.1 (A:) UmuD' {E 99.7 3.2E-16 2.3E-20 122.2 10.1 86 133-221 16-103 (105)
4 d2b5aa1 a.35.1.3 (A:1-77) Regu 98.9 1.4E-09 1E-13 79.1 6.9 67 6-77 8-74 (77)
5 d1y9qa1 a.35.1.8 (A:4-82) Prob 98.9 2.9E-09 2.1E-13 77.1 8.5 68 5-77 5-72 (79)
6 d2croa_ a.35.1.2 (A:) cro 434 98.9 9.1E-10 6.6E-14 80.4 5.6 61 9-75 4-64 (65)
7 d2r1jl1 a.35.1.2 (L:3-68) P22 98.9 1.6E-09 1.2E-13 78.7 6.6 63 8-75 3-65 (66)
8 d1y7ya1 a.35.1.3 (A:5-73) Rest 98.9 3.1E-09 2.2E-13 76.9 8.0 60 8-72 9-68 (69)
9 d1b0na2 a.35.1.3 (A:1-68) SinR 98.9 1.7E-09 1.3E-13 78.6 6.5 64 9-76 2-65 (68)
10 d1x57a1 a.35.1.12 (A:8-85) End 98.8 8.6E-09 6.3E-13 74.0 8.5 60 8-72 6-65 (78)
11 d2o38a1 a.35.1.13 (A:28-116) H 98.8 8.9E-09 6.5E-13 74.0 8.6 68 5-76 8-75 (89)
12 d1lmb3_ a.35.1.2 (3:) lambda C 98.8 1.1E-08 7.8E-13 73.4 7.9 64 7-75 11-74 (87)
13 d1r69a_ a.35.1.2 (A:) 434 C1 r 98.8 3.6E-09 2.7E-13 76.5 5.4 61 9-75 2-62 (63)
14 d1utxa_ a.35.1.3 (A:) Putative 98.8 5E-09 3.7E-13 75.6 6.1 61 11-76 4-64 (66)
15 d2a6ca1 a.35.1.13 (A:1-69) HTH 98.8 1.5E-08 1.1E-12 72.5 8.2 64 6-73 4-67 (69)
16 d2icta1 a.35.1.3 (A:8-94) Anti 98.7 9.6E-09 7E-13 73.7 6.7 63 10-77 3-65 (87)
17 d2ofya1 a.35.1.3 (A:3-84) Puta 98.6 3.9E-08 2.9E-12 69.8 7.0 65 7-77 13-77 (82)
18 d2ppxa1 a.35.1.3 (A:30-91) Unc 98.1 3.5E-06 2.5E-10 57.2 6.1 54 12-71 3-56 (62)
19 d1b12a_ b.87.1.2 (A:) Type 1 s 97.7 6.6E-05 4.8E-09 48.9 7.2 58 139-196 7-82 (247)
20 d2auwa1 a.35.1.10 (A:88-154) H 97.6 6.6E-05 4.8E-09 48.9 6.4 36 11-46 4-39 (67)
21 d1ijwc_ a.4.1.2 (C:) HIN recom 95.7 0.0099 7.2E-07 34.8 5.6 39 2-42 4-42 (47)
22 d1ic8a2 a.35.1.1 (A:87-180) He 95.1 0.026 1.9E-06 32.1 6.0 42 6-47 26-67 (94)
23 d2bnma1 a.35.1.3 (A:6-76) Hydr 95.1 0.056 4.1E-06 29.9 7.7 61 10-74 7-67 (71)
24 d1nera_ a.35.1.2 (A:) Ner {Bac 94.7 0.02 1.5E-06 32.8 4.7 53 13-73 14-66 (74)
25 d1v7ba1 a.4.1.9 (A:1-74) Trans 94.4 0.08 5.8E-06 28.9 7.1 42 1-42 1-45 (74)
26 d1dwka1 a.35.1.4 (A:1-86) Cyan 94.2 0.072 5.3E-06 29.2 6.4 66 2-72 7-72 (86)
27 d1hlva1 a.4.1.7 (A:1-66) DNA-b 94.2 0.057 4.1E-06 29.9 5.9 43 2-44 6-48 (66)
28 d1j5ya1 a.4.5.1 (A:3-67) Putat 93.8 0.027 2E-06 31.9 3.7 41 1-41 1-42 (65)
29 d1r71a_ a.4.14.1 (A:) Transcri 93.7 0.081 5.9E-06 28.9 6.0 42 3-45 13-54 (114)
30 d2jn6a1 a.4.1.19 (A:1-89) Unch 93.6 0.051 3.7E-06 30.2 4.8 41 4-44 6-46 (89)
31 d1zk8a1 a.4.1.9 (A:6-77) Trans 93.5 0.063 4.6E-06 29.6 5.1 40 3-42 2-44 (72)
32 d1vz0a1 a.4.14.1 (A:116-208) P 93.2 0.11 7.7E-06 28.1 6.0 40 4-44 3-42 (93)
33 d2np5a1 a.4.1.9 (A:9-77) Trans 93.1 0.12 8.9E-06 27.7 6.1 38 5-42 2-42 (69)
34 d1jhfa1 a.4.5.2 (A:2-72) LexA 92.8 0.071 5.1E-06 29.3 4.5 40 2-41 1-45 (71)
35 d2fx0a1 a.4.1.9 (A:4-76) Hemol 92.6 0.2 1.5E-05 26.3 6.7 39 5-43 5-46 (73)
36 d2fbqa1 a.4.1.9 (A:2-80) Trans 92.5 0.1 7.4E-06 28.3 5.0 39 4-42 4-45 (79)
37 d2g7sa1 a.4.1.9 (A:3-76) Putat 92.3 0.18 1.3E-05 26.6 6.1 38 5-42 5-45 (74)
38 d2g7la1 a.4.1.9 (A:16-83) Puta 92.0 0.17 1.2E-05 26.9 5.6 41 2-42 2-45 (68)
39 d2g7ga1 a.4.1.9 (A:9-73) Putat 91.7 0.12 9E-06 27.7 4.7 39 4-42 1-40 (65)
40 d2fq4a1 a.4.1.9 (A:9-77) Trans 91.6 0.26 1.9E-05 25.6 6.3 39 4-42 4-45 (69)
41 d3c07a1 a.4.1.9 (A:15-89) Puta 91.5 0.32 2.3E-05 25.0 6.6 39 4-42 5-46 (75)
42 d2o7ta1 a.4.1.9 (A:1-78) Trans 91.4 0.29 2.1E-05 25.3 6.3 38 5-42 8-48 (78)
43 d2iu5a1 a.4.1.9 (A:1-71) Trans 91.2 0.075 5.4E-06 29.1 3.1 41 2-42 4-47 (71)
44 d2ev0a1 a.4.5.24 (A:2-62) Mang 91.1 0.2 1.5E-05 26.3 5.2 41 2-42 1-42 (61)
45 d2id3a1 a.4.1.9 (A:13-80) Puta 91.0 0.35 2.5E-05 24.8 6.4 39 4-42 6-47 (68)
46 d2gfna1 a.4.1.9 (A:4-80) Proba 91.0 0.32 2.3E-05 25.0 6.2 38 5-42 7-47 (77)
47 d2oi8a1 a.4.1.9 (A:8-86) Putat 90.9 0.23 1.6E-05 26.0 5.3 38 5-42 10-50 (79)
48 d1efaa1 a.35.1.5 (A:2-60) Lac 90.8 0.18 1.3E-05 26.6 4.8 49 21-71 2-50 (59)
49 d1uxda_ a.35.1.5 (A:) Fructose 90.7 0.23 1.7E-05 25.9 5.3 51 22-72 1-52 (59)
50 d1pb6a1 a.4.1.9 (A:14-85) Hypo 90.7 0.38 2.8E-05 24.5 6.3 38 5-42 5-45 (72)
51 d2hsga1 a.35.1.5 (A:2-58) Gluc 90.6 0.24 1.8E-05 25.8 5.3 46 21-71 1-49 (57)
52 d2d6ya1 a.4.1.9 (A:7-74) Putat 90.6 0.22 1.6E-05 26.1 5.1 38 5-42 3-43 (68)
53 d1jt6a1 a.4.1.9 (A:2-72) Multi 90.6 0.47 3.4E-05 23.9 6.8 38 5-42 2-42 (71)
54 d1z0xa1 a.4.1.9 (A:4-71) Trans 90.6 0.16 1.2E-05 26.9 4.4 40 3-42 1-44 (68)
55 d1t56a1 a.4.1.9 (A:22-94) Ethr 90.5 0.23 1.7E-05 26.0 5.1 38 5-42 4-44 (73)
56 d1e3oc2 a.35.1.1 (C:1-75) Oct- 90.5 0.27 2E-05 25.5 5.4 55 9-70 12-72 (75)
57 d2hkua1 a.4.1.9 (A:18-87) Puta 90.3 0.53 3.8E-05 23.6 6.8 38 5-42 2-41 (70)
58 d1ui5a1 a.4.1.9 (A:5-75) A-fac 90.2 0.51 3.7E-05 23.7 6.7 40 3-42 4-46 (71)
59 d1t33a1 a.4.1.9 (A:1-88) Putat 90.1 0.4 2.9E-05 24.4 6.1 38 5-42 13-52 (88)
60 d1qpza1 a.35.1.5 (A:2-58) Puri 90.1 0.27 2E-05 25.5 5.2 44 23-71 2-48 (57)
61 d1k78a1 a.4.1.5 (A:19-81) Pax- 89.6 0.35 2.5E-05 24.8 5.4 34 9-43 19-52 (63)
62 d1gdta1 a.4.1.2 (A:141-183) ga 89.6 0.29 2.1E-05 25.3 5.0 32 11-43 9-40 (43)
63 d1z05a1 a.4.5.63 (A:10-80) Tra 89.3 0.33 2.4E-05 24.9 5.1 32 10-41 9-40 (71)
64 d2g3ba1 a.4.1.9 (A:2-73) Putat 89.2 0.36 2.6E-05 24.7 5.3 38 5-42 3-43 (72)
65 d2hyja1 a.4.1.9 (A:8-82) Putat 88.9 0.35 2.6E-05 24.7 5.0 39 4-42 5-46 (75)
66 d1z6ra1 a.4.5.63 (A:12-81) Mlc 88.8 0.24 1.7E-05 25.9 4.1 34 9-42 7-40 (70)
67 d1rkta1 a.4.1.9 (A:2-82) Hypot 88.3 0.46 3.3E-05 24.0 5.3 38 5-42 12-52 (81)
68 d1umqa_ a.4.1.12 (A:) Photosyn 88.0 0.54 3.9E-05 23.5 5.5 38 5-42 16-54 (60)
69 d2isya1 a.4.5.24 (A:2-64) Iron 87.9 0.55 4E-05 23.5 5.5 38 5-42 6-44 (63)
70 d1vi0a1 a.4.1.9 (A:6-77) Hypot 87.9 0.44 3.2E-05 24.1 5.0 38 5-42 2-42 (72)
71 d3ctaa1 a.4.5.28 (A:5-89) Ta10 87.7 0.18 1.3E-05 26.6 2.9 34 8-41 2-41 (85)
72 d1pdnc_ a.4.1.5 (C:) Paired pr 87.7 0.57 4.1E-05 23.4 5.5 34 8-42 20-53 (123)
73 d1au7a2 a.35.1.1 (A:5-76) Pit- 87.6 0.43 3.1E-05 24.2 4.8 56 9-71 8-69 (72)
74 d2id6a1 a.4.1.9 (A:1-75) Trans 87.4 0.47 3.4E-05 23.9 4.9 38 5-42 4-44 (75)
75 d1sgma1 a.4.1.9 (A:5-77) Putat 87.1 0.27 2E-05 25.5 3.5 38 5-42 3-43 (73)
76 d2fd5a1 a.4.1.9 (A:1-76) Proba 87.1 0.24 1.7E-05 25.9 3.2 39 4-42 7-48 (76)
77 d2gena1 a.4.1.9 (A:6-75) Proba 86.3 0.96 7E-05 21.9 6.8 37 6-42 2-41 (70)
78 d2a61a1 a.4.5.28 (A:5-143) Tra 86.2 0.61 4.4E-05 23.2 4.9 32 10-41 33-64 (139)
79 d2d1ha1 a.4.5.50 (A:1-109) Hyp 86.0 0.39 2.9E-05 24.4 3.9 32 10-41 24-56 (109)
80 d2vkva1 a.4.1.9 (A:6-67) Tetra 86.0 0.56 4.1E-05 23.4 4.7 36 7-42 2-40 (62)
81 d2csfa1 a.35.1.7 (A:8-95) DNA- 85.2 1.1 7.8E-05 21.6 5.9 64 6-69 12-77 (88)
82 d2cfxa1 a.4.5.32 (A:1-63) Tran 85.1 0.47 3.4E-05 23.9 3.9 30 11-40 9-38 (63)
83 d2gaua1 a.4.5.4 (A:152-232) Tr 85.0 0.98 7.2E-05 21.9 5.5 58 6-63 3-79 (81)
84 d1biaa1 a.4.5.1 (A:1-63) Bioti 84.8 0.51 3.7E-05 23.7 4.0 32 10-41 8-39 (63)
85 d2hoea1 a.4.5.63 (A:10-71) N-a 84.7 0.58 4.3E-05 23.3 4.3 29 13-42 5-33 (62)
86 d1u2wa1 a.4.5.5 (A:12-119) Cad 84.5 0.25 1.8E-05 25.7 2.3 38 4-41 28-65 (108)
87 d1mkma1 a.4.5.33 (A:1-75) Tran 84.3 0.92 6.7E-05 22.0 5.1 36 7-42 5-41 (75)
88 d1etxa_ a.4.1.12 (A:) FIS prot 83.9 0.89 6.5E-05 22.1 4.9 31 11-41 52-82 (89)
89 d2i10a1 a.4.1.9 (A:10-78) Puta 83.9 0.84 6.1E-05 22.3 4.8 37 6-42 2-41 (69)
90 d1i5za1 a.4.5.4 (A:138-206) Ca 83.1 0.7 5.1E-05 22.8 4.1 36 7-42 4-50 (69)
91 d2o4aa1 a.35.1.7 (A:370-452) D 82.8 1.3 9.5E-05 21.1 5.4 62 7-68 4-67 (83)
92 d1j9ia_ a.6.1.5 (A:) Terminase 82.4 0.56 4.1E-05 23.4 3.4 41 21-61 2-49 (68)
93 d2fxaa1 a.4.5.28 (A:6-167) Pro 82.3 1.1 8.1E-05 21.5 4.9 37 4-41 39-75 (162)
94 d3e5ua1 a.4.5.4 (A:148-227) Ch 82.0 1.4 0.00011 20.8 5.4 35 7-41 4-50 (80)
95 d1sfxa_ a.4.5.50 (A:) Hypothet 80.6 1.3 9.3E-05 21.1 4.7 31 11-41 24-54 (109)
96 d2etha1 a.4.5.28 (A:1-140) Put 80.5 1.2 8.5E-05 21.4 4.5 32 10-41 35-66 (140)
97 d2o3fa1 a.4.1.20 (A:1-83) Puta 80.5 1.2 9.1E-05 21.2 4.6 40 6-45 20-60 (83)
98 d1z91a1 a.4.5.28 (A:8-144) Org 80.3 0.59 4.3E-05 23.3 2.9 32 10-41 36-67 (137)
99 d1jgsa_ a.4.5.28 (A:) Multiple 80.3 1.3 9.4E-05 21.1 4.6 32 10-41 37-68 (138)
100 d1lnwa_ a.4.5.28 (A:) MexR rep 80.0 0.95 6.9E-05 21.9 3.9 30 12-41 41-70 (141)
101 d1ntca_ a.4.1.12 (A:) DNA-bind 80.0 0.82 6E-05 22.4 3.6 29 12-40 55-83 (91)
102 d2cg4a1 a.4.5.32 (A:4-66) Regu 80.0 0.91 6.6E-05 22.1 3.8 29 12-40 10-38 (63)
103 d3broa1 a.4.5.28 (A:3-137) Tra 80.0 1.4 0.0001 20.9 4.8 31 11-41 33-65 (135)
104 d2hr3a1 a.4.5.28 (A:2-146) Pro 78.9 1.6 0.00011 20.5 4.7 31 11-41 38-69 (145)
105 d1lj9a_ a.4.5.28 (A:) Transcri 78.3 0.94 6.8E-05 22.0 3.4 31 11-41 33-63 (144)
106 d1x2la1 a.35.1.7 (A:9-95) Home 78.2 1.9 0.00014 20.0 5.6 40 4-43 9-49 (87)
107 d2fbia1 a.4.5.28 (A:5-140) Pro 77.9 1.3 9.7E-05 21.0 4.1 32 10-41 33-64 (136)
108 d1i1ga1 a.4.5.32 (A:2-61) LprA 77.6 1.2 9E-05 21.2 3.8 28 13-40 9-36 (60)
109 d2fbha1 a.4.5.28 (A:8-144) Tra 76.8 1.7 0.00012 20.3 4.4 32 10-41 31-63 (137)
110 d2cyya1 a.4.5.32 (A:5-64) Puta 76.7 1.3 9.8E-05 21.0 3.8 30 11-40 7-36 (60)
111 d1d1la_ a.35.1.2 (A:) cro lamb 76.2 1.6 0.00012 20.5 4.1 31 13-45 7-37 (61)
112 d1ub9a_ a.4.5.28 (A:) Hypothet 76.1 1.2 8.4E-05 21.4 3.4 32 10-41 19-50 (100)
113 d1s3ja_ a.4.5.28 (A:) Putative 75.9 1.3 9.5E-05 21.0 3.6 32 10-41 38-69 (143)
114 d1q06a_ a.6.1.3 (A:) Transcrip 74.2 1.4 0.0001 20.9 3.4 52 22-73 1-64 (127)
115 d1rzsa_ a.35.1.2 (A:) cro p22 74.0 1.2 8.5E-05 21.4 3.0 23 18-41 8-30 (61)
116 d1wh6a_ a.35.1.7 (A:) Homeobox 73.9 2.5 0.00018 19.2 5.5 40 4-43 17-57 (101)
117 d1r1ua_ a.4.5.5 (A:) Metal-sen 73.7 2.3 0.00017 19.4 4.5 39 3-42 14-52 (94)
118 d1g2ha_ a.4.1.12 (A:) Transcri 73.3 2.6 0.00019 19.2 5.2 31 11-42 24-54 (61)
119 d1ft9a1 a.4.5.4 (A:134-213) CO 72.8 1.6 0.00011 20.5 3.4 35 7-41 4-50 (80)
120 d2zcwa1 a.4.5.4 (A:118-199) Tr 72.3 2.7 0.0002 19.0 4.7 59 6-64 3-80 (82)
121 d2bv6a1 a.4.5.28 (A:5-140) Tra 72.1 0.85 6.2E-05 22.3 1.9 32 10-41 37-68 (136)
122 d2fbka1 a.4.5.28 (A:8-179) Tra 71.1 0.58 4.2E-05 23.3 0.8 22 20-41 78-99 (172)
123 d1r1ta_ a.4.5.5 (A:) SmtB repr 70.3 1.9 0.00014 19.9 3.4 29 13-42 29-57 (98)
124 d1jhga_ a.4.12.1 (A:) Trp repr 70.1 3 0.00022 18.7 4.4 39 4-42 36-79 (101)
125 d1wh8a_ a.35.1.7 (A:) Homeobox 69.6 3.1 0.00023 18.6 5.7 38 6-43 29-67 (111)
126 d1sfua_ a.4.5.19 (A:) 34L {Yab 69.1 1 7.4E-05 21.8 1.8 36 6-41 9-44 (70)
127 d1a04a1 a.4.6.2 (A:150-216) Ni 68.5 3.3 0.00024 18.5 4.4 24 20-43 20-43 (67)
128 d1nr3a_ d.236.1.1 (A:) DNA-bin 68.5 0.1 7.6E-06 28.2 -3.4 28 18-45 2-29 (122)
129 d1zyba1 a.4.5.4 (A:148-220) Pr 68.0 1.9 0.00014 20.0 3.0 36 6-41 6-47 (73)
130 d2cpga_ a.43.1.3 (A:) Transcri 67.7 2.1 0.00015 19.8 3.1 25 6-30 10-34 (43)
131 d1s7ea2 a.35.1.7 (A:6-85) Hepa 67.7 3.4 0.00025 18.4 5.9 61 6-67 4-66 (80)
132 d1zs4a1 a.35.1.9 (A:4-81) Regu 67.4 1.9 0.00014 20.0 2.8 35 23-63 22-56 (78)
133 d3deua1 a.4.5.28 (A:2-141) Tra 67.2 2.4 0.00017 19.4 3.3 32 10-41 34-66 (140)
134 d1r8da_ a.6.1.3 (A:) Multidrug 67.1 2.4 0.00017 19.3 3.3 56 21-76 2-69 (109)
135 d2p4wa1 a.4.5.64 (A:1-194) Tra 66.2 1.7 0.00013 20.3 2.5 37 4-41 12-48 (194)
136 d2bgca1 a.4.5.4 (A:138-237) Li 66.0 3.7 0.00027 18.2 4.8 62 8-69 5-88 (100)
137 d2gxba1 a.4.5.19 (A:140-198) Z 65.1 3.4 0.00024 18.4 3.8 36 6-41 1-36 (59)
138 d1aoya_ a.4.5.3 (A:) Arginine 65.1 3.8 0.00028 18.0 4.1 39 5-43 6-51 (78)
139 d1ulya_ a.4.5.58 (A:) Hypothet 65.0 2.6 0.00019 19.2 3.1 29 12-41 24-52 (190)
140 d1bl0a1 a.4.1.8 (A:9-62) MarA 65.0 2.6 0.00019 19.1 3.2 37 7-44 6-42 (54)
141 d2ao9a1 a.4.1.17 (A:13-132) Ph 64.5 2.5 0.00019 19.2 3.0 41 3-43 11-58 (120)
142 d1zvpa1 d.58.18.9 (A:2-67) Hyp 62.6 2.5 0.00018 19.3 2.7 36 146-181 12-50 (66)
143 d1s7oa_ a.4.13.3 (A:) Hypothet 59.9 4.7 0.00034 17.5 3.7 28 15-42 26-53 (106)
144 d1yioa1 a.4.6.2 (A:131-200) Re 59.4 4.8 0.00035 17.4 4.5 25 19-43 25-49 (70)
145 d2frha1 a.4.5.28 (A:102-216) P 59.4 3.8 0.00027 18.1 3.2 29 13-41 39-69 (115)
146 d1rp3a2 a.4.13.2 (A:164-234) S 59.1 4.8 0.00035 17.4 4.1 29 15-43 31-59 (71)
147 d1hsja1 a.4.5.28 (A:373-487) S 58.9 2 0.00014 19.9 1.6 24 18-41 45-68 (115)
148 d1r8ea1 a.6.1.3 (A:3-120) Tran 58.6 2.8 0.0002 18.9 2.4 53 22-74 4-69 (118)
149 d1p4xa2 a.4.5.28 (A:126-250) S 58.2 3.2 0.00023 18.6 2.6 24 18-41 46-69 (125)
150 d1rp3a1 a.4.13.1 (A:87-163) Si 57.8 5.1 0.00037 17.2 5.3 37 7-43 10-48 (77)
151 d1l3la1 a.4.6.2 (A:170-234) Qu 57.1 5 0.00037 17.2 3.5 25 19-43 17-41 (65)
152 d1fsea_ a.4.6.2 (A:) Germinati 57.0 5 0.00036 17.3 3.4 26 19-44 17-42 (67)
153 d1d5ya1 a.4.1.8 (A:3-56) Rob t 57.0 2 0.00015 19.8 1.4 33 12-44 8-42 (54)
154 d1ku9a_ a.4.5.36 (A:) DNA-bind 56.3 2.8 0.0002 18.9 2.1 23 19-41 39-61 (151)
155 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 55.2 5.6 0.00041 16.9 6.5 44 2-46 22-73 (80)
156 d1p4wa_ a.4.6.2 (A:) Transcrip 53.2 6 0.00044 16.7 3.6 46 20-66 36-81 (87)
157 d1xsva_ a.4.13.3 (A:) Hypothet 51.0 6.5 0.00048 16.5 3.6 28 15-42 28-55 (106)
158 d2np3a1 a.4.1.9 (A:35-99) Puta 50.5 1.6 0.00011 20.6 0.0 34 10-43 2-38 (65)
159 d1y14a_ a.60.8.2 (A:) RNA poly 50.1 6.8 0.00049 16.4 5.1 61 3-64 108-168 (176)
160 d1p4xa1 a.4.5.28 (A:1-125) Sta 45.2 3.3 0.00024 18.4 1.0 22 20-41 49-70 (125)
161 d3bwga1 a.4.5.6 (A:5-82) Trans 42.7 8.8 0.00064 15.7 4.5 34 8-41 2-42 (78)
162 d1zavu1 a.108.1.1 (U:1-30) Rib 42.3 7.5 0.00055 16.1 2.5 22 4-31 1-22 (30)
163 d1or7a1 a.4.13.2 (A:120-187) S 40.5 9.4 0.00069 15.5 5.4 28 15-42 28-55 (68)
164 d2c35a1 a.60.8.2 (A:14-142) RN 39.7 9.7 0.00071 15.4 4.4 59 5-64 62-120 (129)
165 d1v4ra1 a.4.5.6 (A:1-100) Tran 38.8 10 0.00073 15.3 3.6 37 5-41 10-53 (100)
166 d1dpua_ a.4.5.16 (A:) C-termin 37.7 7.2 0.00052 16.3 1.8 36 6-41 8-44 (69)
167 d1rfza_ a.195.1.1 (A:) YutG ho 36.5 4 0.00029 17.9 0.3 31 1-31 4-34 (164)
168 d2dt5a1 a.4.5.38 (A:4-77) Tran 36.3 11 0.0008 15.1 3.5 29 11-40 13-44 (74)
169 d2esna1 a.4.5.37 (A:3-91) Prob 35.2 11 0.00083 14.9 5.8 44 10-71 11-54 (89)
170 d1b4aa1 a.4.5.3 (A:4-78) Argin 34.9 12 0.00084 14.9 4.5 33 11-43 5-43 (75)
171 d2hs5a1 a.4.5.6 (A:25-93) Puta 33.2 12 0.0009 14.7 5.2 36 6-41 4-45 (69)
172 d2p5ka1 a.4.5.3 (A:2-64) Argin 32.7 13 0.00091 14.7 4.1 34 10-43 6-45 (63)
173 d1ttya_ a.4.13.2 (A:) Sigma70 31.2 13 0.00096 14.5 4.1 46 20-66 37-83 (87)
174 d1ku3a_ a.4.13.2 (A:) Sigma70 31.2 13 0.00097 14.5 4.0 26 18-43 25-50 (61)
175 d1hw1a1 a.4.5.6 (A:5-78) Fatty 30.0 14 0.001 14.4 2.9 32 10-41 9-47 (74)
176 d2cqxa1 a.4.1.1 (A:8-66) LAG1 29.5 14 0.001 14.4 2.7 21 24-44 32-52 (59)
177 d9anta_ a.4.1.1 (A:) Antennape 28.8 15 0.0011 14.3 4.7 44 2-45 2-48 (56)
178 d1s4ka_ a.35.1.6 (A:) Putative 28.4 15 0.0011 14.2 6.3 35 13-47 8-44 (120)
179 d1l0oc_ a.4.13.2 (C:) SigmaF { 28.4 15 0.0011 14.2 4.2 36 6-41 14-51 (57)
180 d2awia1 a.35.1.11 (A:2-66) Prg 27.9 15 0.0011 14.2 6.0 60 9-74 3-62 (65)
181 d1b72a_ a.4.1.1 (A:) Homeobox 26.0 16 0.0012 14.0 4.7 41 3-44 33-77 (88)
182 d2ezla_ a.4.1.2 (A:) Ibeta sub 25.9 16 0.0012 13.9 5.1 50 9-63 38-91 (99)
183 d1zq3p1 a.4.1.1 (P:2-68) Homeo 24.8 17 0.0012 13.8 4.7 42 2-44 6-51 (67)
184 d1ixca1 a.4.5.37 (A:1-89) LysR 24.8 17 0.0012 13.8 5.8 29 11-41 7-35 (89)
185 d1qnta1 a.4.2.1 (A:92-176) O6- 23.3 11 0.00078 15.1 0.6 32 3-34 2-33 (85)
186 d2craa1 a.4.1.1 (A:7-64) Homeo 22.4 19 0.0014 13.5 5.8 42 2-44 6-51 (58)
187 d1s7ea1 a.4.1.1 (A:103-152) He 22.0 18 0.0013 13.7 1.6 21 24-44 28-48 (50)
188 d1b9ma1 a.4.5.8 (A:-1-126) N-t 21.9 19 0.0014 13.5 5.8 29 11-41 24-52 (127)
189 d2cuea1 a.4.1.1 (A:7-74) Paire 21.8 20 0.0014 13.4 4.7 43 2-45 6-52 (68)
190 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 21.3 20 0.0015 13.4 5.8 42 2-44 5-50 (58)
191 d1ftta_ a.4.1.1 (A:) Thyroid t 21.1 20 0.0015 13.4 5.8 42 2-44 7-52 (68)
192 d2pp6a1 b.106.1.2 (A:1-93) Gif 21.1 20 0.0015 13.3 5.1 38 156-196 52-89 (93)
193 d2ns0a1 a.4.5.76 (A:1-85) Hypo 21.1 20 0.0015 13.3 4.2 30 4-33 3-36 (85)
194 d1bw5a_ a.4.1.1 (A:) Insulin g 20.9 20 0.0015 13.3 5.8 42 2-44 8-53 (66)
195 d1jgga_ a.4.1.1 (A:) Even-skip 20.9 20 0.0015 13.3 5.8 42 2-44 4-49 (57)
196 d2nn6a2 d.101.1.1 (A:185-302) 20.6 21 0.0015 13.3 1.7 39 151-191 15-56 (118)
197 d2oa4a1 a.4.12.3 (A:1-93) Unch 20.3 21 0.0015 13.2 3.8 40 21-60 50-89 (93)
No 1
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.80 E-value=3.9e-19 Score=141.05 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=91.7
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCCCEEEEECCCCCCC
Q ss_conf 22024310113452221112544464035643721135454200368559999628332421-48786899936897405
Q gi|254780444|r 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 (223)
Q Consensus 89 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM~P~-i~~Gd~vlVd~~~~~~~ 167 (223)
.+|+++..+||...... ....+.+.++... ..++++|+++|+||||+|+ |++||+|+|+++.++.+
T Consensus 3 ~IPv~g~v~AG~p~~a~------e~~e~~~~~~~~~-------~~~~~~f~lrV~GdSM~~~~i~~gd~viv~~~~~~~~ 69 (126)
T d1jhfa2 3 GLPLVGRVAADEPLLAQ------QHIEGHYQVDPSL-------FKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRN 69 (126)
T ss_dssp SEEEECCCCTTSCTTCG------GGEEEEECBCGGG-------SSSCCCEEEECCSSTTGGGTCCTTCEEEEEECSCCCT
T ss_pred CCCEEEEECCCCCCHHH------CCCCCEEECCHHH-------CCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 89888783698988002------0333248456899-------3888669999948766674147997999713640339
Q ss_pred CCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECH--HHEEEEEEEEEE
Q ss_conf 888999971796899999997798799996858988758547--865999779985
Q gi|254780444|r 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIARILWA 221 (223)
Q Consensus 168 g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~--~~i~iigrVvw~ 221 (223)
|++|++.. +|++++||+++. ++.++|.|+||+|+|+.++. ++++|||||+.+
T Consensus 70 G~ivv~~~-~ge~~vKrl~~~-~~~~~L~s~N~~y~pi~~~~~~~~~~IiG~Vv~v 123 (126)
T d1jhfa2 70 GQVVVARI-DDEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGV 123 (126)
T ss_dssp TSEEEEEE-TTEEEEEEEEEE-TTEEEEECSSTTCCCEEEETTTSCEEEEEEEEEE
T ss_pred CCEEEEEE-CCEEEEEEEEEC-CCEEEEECCCCCCCCEECCCCCCCEEEEEEEEEE
T ss_conf 98999999-999999999982-9999996478679976816888958999999999
No 2
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=99.80 E-value=2.4e-19 Score=142.35 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=78.7
Q ss_pred CCCEEEEEECCCCC------CCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEE
Q ss_conf 68559999628332------421487868999368974058889999717968999999977987999968589887585
Q gi|254780444|r 134 QTQDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 (223)
Q Consensus 134 ~~~~~~l~V~GDSM------~P~i~~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i 207 (223)
..++|+++|+|||| +|.|++||+|+||++.++.+|++|++...++++++||+.+. ++.+.|.|+||+|+++.+
T Consensus 2 s~~~F~l~V~GdSM~~~~~~ep~i~~Gd~viVd~~~~~~~g~ivva~~~~~~~~vKr~~~~-~~~~~L~s~N~~y~~i~~ 80 (101)
T d1f39a_ 2 SASAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD-SGQVFLQPLNPQYPMIPC 80 (101)
T ss_dssp CTTCEEEECCSSTTCCCTTCSSCCCTTCEEEEETTSCCCTTCEEEEECTTSCEEEEEEEEE-TTEEEEECSSTTSCCEEC
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCEEEEEEEEEC-CCEEEEEECCCCCCCCCC
T ss_conf 7678999995875478866689849899999981475577989999988980899999976-998999989989898837
Q ss_pred CHHHEEEEEEEEEE
Q ss_conf 47865999779985
Q gi|254780444|r 208 EMSDIEWIARILWA 221 (223)
Q Consensus 208 ~~~~i~iigrVvw~ 221 (223)
+ ++++|||||||.
T Consensus 81 ~-~~~~IiG~Vv~s 93 (101)
T d1f39a_ 81 N-ESCSVVGKVIAS 93 (101)
T ss_dssp S-TTCEEEEEEEEE
T ss_pred C-CCCEEEEEEEEE
T ss_conf 9-986999999889
No 3
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=99.66 E-value=3.2e-16 Score=122.19 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=75.2
Q ss_pred CCCCEEEEEECCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHH-
Q ss_conf 368559999628332-421487868999368974058889999717968999999977987999968589887585478-
Q gi|254780444|r 133 IQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210 (223)
Q Consensus 133 ~~~~~~~l~V~GDSM-~P~i~~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~- 210 (223)
.+...|+++|+|||| +|.|.+||+++||++.++.+|++|++.. +|+.++||+.. . +.+.|.|+||.|+|+.+..+
T Consensus 16 ~~~~~f~~rV~GdSM~~~gI~~GDlliVd~~~~~~~g~ivva~i-~ge~~vKrl~~-~-~~~~L~~~N~~y~~i~i~~~~ 92 (105)
T d1umua_ 16 HPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAV-DGEFTVKKLQL-R-PTVQLIPMNSAYSPITISSED 92 (105)
T ss_dssp CGGGEEEEECCSSTTGGGTCCTTCEEEEETTSCCCTTCEEEEEE-TTEEEEEEEEC-S-SSCEEECSSTTSCCEECCTTS
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEE-CCEEEEEEEEE-C-CCEEEECCCCCCCCEECCCCC
T ss_conf 98865999991885334760899899998255544575899999-99999999997-8-909998799999987859999
Q ss_pred HEEEEEEEEEE
Q ss_conf 65999779985
Q gi|254780444|r 211 DIEWIARILWA 221 (223)
Q Consensus 211 ~i~iigrVvw~ 221 (223)
+++|+|+|+++
T Consensus 93 ~~~I~GvVv~v 103 (105)
T d1umua_ 93 TLDVFGVVIHV 103 (105)
T ss_dssp CEEEEEEEEEE
T ss_pred CEEEEEEEEEE
T ss_conf 78999999999
No 4
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=98.91 E-value=1.4e-09 Score=79.12 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 899999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~ 77 (223)
++.++++|+++|+++|+||.+||+++|++++++++|++|.. .|+.+.|.++|.++++++++|....+
T Consensus 8 ~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~-----~p~~~~l~~ia~~l~v~~~~l~~~~~ 74 (77)
T d2b5aa1 8 KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDR-----NISLINIHKICAALDIPASTFFRKME 74 (77)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS-----CCBHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 99999999999998099999999897979999999986998-----99999999999996989999854235
No 5
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=98.91 E-value=2.9e-09 Score=77.10 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5899999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~ 77 (223)
-.+.|+.+|+.+|+++|+||.+||+++|++++++++|++|.. .|+.+.+.++|+++++++++|.....
T Consensus 5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~-----~p~~~~l~~ia~~l~v~~~~l~~~~~ 72 (79)
T d1y9qa1 5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGES-----SPTIATLWKIASGLEASFSAFFANDP 72 (79)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCS-----CCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 999999999999998299999999987711648999986998-----99999999999998987999838996
No 6
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=98.90 E-value=9.1e-10 Score=80.37 Aligned_cols=61 Identities=21% Similarity=0.127 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999999999649998899998289987988997515788755779899999873218752100001
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~ 75 (223)
|.++|+.+|+++|+||.+||+++|++++++++|++|... |. +.+.++|++++++++||+.+
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~-----~~-~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-----RP-RFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCS-----SC-TTHHHHHHHTTSCHHHHHHC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-----CH-HHHHHHHHHHCCCHHHHHHC
T ss_conf 999999999984999999999978679499987877999-----99-99999999969989998338
No 7
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=98.89 E-value=1.6e-09 Score=78.72 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999649998899998289987988997515788755779899999873218752100001
Q gi|254780444|r 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 (223)
Q Consensus 8 ~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~ 75 (223)
.|+.+|+++|+++|+||.+||+++|++++++++|++|.. .|+.+.+.++|++++++++||+.+
T Consensus 3 ~ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~-----~p~~~~l~~ia~~l~v~~~~Ll~g 65 (66)
T d2r1jl1 3 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSET-----EPNGENLLALSKALQCSPDYLLKG 65 (66)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSS-----CCBHHHHHHHHHHTTSCHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 999999999998599999999997989999999986998-----999999999999969889998467
No 8
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=98.89 E-value=3.1e-09 Score=76.93 Aligned_cols=60 Identities=22% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999649998899998289987988997515788755779899999873218752100
Q gi|254780444|r 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 (223)
Q Consensus 8 ~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l 72 (223)
+++.+|+++|+++||||.+||+++|++++++++|++|.. .|+.+.+.++|++++++++++
T Consensus 9 ~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~-----~p~~~~l~~ia~~l~v~~~~l 68 (69)
T d1y7ya1 9 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR-----NVSLVNILKLATALDIEPREL 68 (69)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS-----CCBHHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999999998399999998682998989999987999-----999999999999969599997
No 9
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=98.88 E-value=1.7e-09 Score=78.57 Aligned_cols=64 Identities=25% Similarity=0.266 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999996499988999982899879889975157887557798999998732187521000011
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~ 76 (223)
|+++|+++|+++|+||.+||+++|++++++++|++|. ...|+.+++.++|++++++++++....
T Consensus 2 ig~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~----~~~ps~~~l~~ia~~l~v~~~~l~~~~ 65 (68)
T d1b0na2 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNL----QTNPSIQFLEKVSAVLDVSVHTLLDEK 65 (68)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC----CSCCCHHHHHHHHHHHTCCHHHHHCCT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCCHHHHHHHHHHHCCCHHHHCCCC
T ss_conf 7999999999829999999989797999999998599----899999999999999898699983998
No 10
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.82 E-value=8.6e-09 Score=74.05 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999649998899998289987988997515788755779899999873218752100
Q gi|254780444|r 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 (223)
Q Consensus 8 ~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l 72 (223)
+|+++|+.+|+++|+||.+||+++|++.+++++|++|... |+.+.|.++++++++++...
T Consensus 6 ~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~-----p~~~~l~~la~~l~v~l~~~ 65 (78)
T d1x57a1 6 EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAI-----PNNQVLGKIERAIGLKLRGK 65 (78)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSC-----CCHHHHHHHHHHHTBCCSST
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999985997267887188789999999806779-----99999999999909966456
No 11
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=98.82 E-value=8.9e-09 Score=73.95 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 589999999999996499988999982899879889975157887557798999998732187521000011
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~ 76 (223)
..-+|+..|.++|+++||||.+||+++|+++++|++|++|. .+.|+.++|.+++++++++++++....
T Consensus 8 ~k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~----~~~~~~~~L~~ia~~Lg~~i~~~~~~~ 75 (89)
T d2o38a1 8 TKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYK----LEGFSVERLMTLLNALDQDVEIVIRKK 75 (89)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC----CTTCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHCCCCHHHEECCC
T ss_conf 99999999999999959999999999973370899998499----789868999999999099888701578
No 12
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=98.78 E-value=1.1e-08 Score=73.43 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999999999649998899998289987988997515788755779899999873218752100001
Q gi|254780444|r 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 (223)
Q Consensus 7 ~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~ 75 (223)
+++.+.|+++|+++||||.+||+++|++++++++|++|... |+.+.+.++|+++++++.++...
T Consensus 11 ~~l~~~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~-----~s~~~l~~ia~~l~v~~~~~~~~ 74 (87)
T d1lmb3_ 11 RRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINA-----LNAYNAALLAKILKVSVEEFSPS 74 (87)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSC-----CCHHHHHHHHHHHTSCGGGTCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC-----CCHHHHHHHHHHHCCCHHHHCHH
T ss_conf 99999999999993999999998867228889999811478-----75999999999989799998746
No 13
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=98.78 E-value=3.6e-09 Score=76.46 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999999999649998899998289987988997515788755779899999873218752100001
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~ 75 (223)
|+++|+++|+++|+||.+||+++|++++++++|+++. .|+.+.+.++|++++++++||..+
T Consensus 2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~------~~~~~~l~~ia~~l~v~~~~l~~G 62 (63)
T d1r69a_ 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK------TKRPRFLPELASALGVSVDWLLNG 62 (63)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS------CSSCTTHHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC------CCCHHHHHHHHHHHCCCHHHHHHC
T ss_conf 8999999999849969999998373999999987898------949899999999989689998448
No 14
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=98.78 E-value=5e-09 Score=75.55 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=55.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999996499988999982899879889975157887557798999998732187521000011
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~ 76 (223)
.+|+.+|+++|+||.+||+++|++++++++|++|.. .|+.+.+.++|++++++++++....
T Consensus 4 ~ri~~lR~~~g~tq~elA~~~gis~~~is~~e~g~~-----~p~~~~l~~ia~~l~v~~~~lf~~~ 64 (66)
T d1utxa_ 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKY-----NPSLQLALKIAYYLNTPLEDIFQWQ 64 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC-----CCCHHHHHHHHHHTTSCHHHHEEEC
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHHCCCC
T ss_conf 999999998599999998863557989999986998-----9999999999999798799982989
No 15
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=98.77 E-value=1.5e-08 Score=72.52 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999999999996499988999982899879889975157887557798999998732187521000
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~ 73 (223)
..++..+|.++|+++||||.+||+++|++++++++|++|. .+.|+.++|.++|+++|++++...
T Consensus 4 ~~~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~----~~~~s~~~L~~ia~~Lg~~i~~~~ 67 (69)
T d2a6ca1 4 RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGK----IDLFSLESLIDMITSIGLKVEINI 67 (69)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTC----GGGCCHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCC----CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999969999999999874784799997665----201008999999999199707651
No 16
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=98.74 E-value=9.6e-09 Score=73.72 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=56.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~ 77 (223)
++.|+.+|+++|+||.+||+++|+++++|++|++|.. .|+.+.+.++++++|+++++++....
T Consensus 3 Ge~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~-----~~s~~~~~kla~~lgvs~~~~L~lq~ 65 (87)
T d2icta1 3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKA-----ALTPEMAIKLSVVIGSSPQMWLNLQN 65 (87)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSS-----CCCHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCC-----CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7999999998699999999997246999999998501-----79899999999998919999982189
No 17
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=98.63 E-value=3.9e-08 Score=69.77 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 (223)
Q Consensus 7 ~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~ 77 (223)
+.|+++|+++|+ |+|+++||+++|++++++++|++|. .+.|+.++|.+||+++++++++|+....
T Consensus 13 ~~lG~~ir~~R~--~~t~~eLA~~~Gvs~~~ls~iE~G~----~~~ps~~tl~kia~~L~v~~~~Ll~~~~ 77 (82)
T d2ofya1 13 QRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGR----IATPAFFTIAAVARVLDLSLDDVAAVVT 77 (82)
T ss_dssp HHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTC----CSSCBHHHHHHHHHHTTCCHHHHHTTCC
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCC----CCCCCHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 999999999998--0799999989717999999998298----6788899999999998988999985547
No 18
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=98.07 E-value=3.5e-06 Score=57.17 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 999999964999889999828998798899751578875577989999987321875210
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~ 71 (223)
.|+++|++.||||.+||+++|++++|+++|++|... |+...+. ++..+...++.
T Consensus 3 ~ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~G~~~-----P~~~~~~-ll~~l~~~Pe~ 56 (62)
T d2ppxa1 3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSE-----PDQPARA-YLKIIAVDPEG 56 (62)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSC-----CCHHHHH-HHHHHHHCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHH-HHHHHHCCHHH
T ss_conf 889999996999999999969899999988779889-----9999999-99998669999
No 19
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=97.69 E-value=6.6e-05 Score=48.90 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=45.9
Q ss_pred EEEECCCCCCCCCCCCCEEEEECC----------------CCCCCCCEEEEEEEC--CCEEEEEEEEECCCEEEEE
Q ss_conf 999628332421487868999368----------------974058889999717--9689999999779879999
Q gi|254780444|r 139 RHKTQDTSMLPLYRKGDILILNSA----------------IQVNCGDRLLIKPRT--GDIVAKVLISRRGRSIDLM 196 (223)
Q Consensus 139 ~l~V~GDSM~P~i~~Gd~vlVd~~----------------~~~~~g~~v~~~~~~--~~~~iKrl~~~~~~~~~l~ 196 (223)
++.|.+.||+|+|..||.|+|++- .....||++++.... ...+|||+.-.+++.+.+.
T Consensus 7 ~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~pGD~i~~~ 82 (247)
T d1b12a_ 7 PFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYD 82 (247)
T ss_dssp EEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEEE
T ss_pred EEEECCCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8993860260112169889999265676677658500224686447255536888887543102447888768973
No 20
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=97.62 E-value=6.6e-05 Score=48.89 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 999999996499988999982899879889975157
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~ 46 (223)
+.|+.+|++.||||.+||+++||+..|+++|++|..
T Consensus 4 e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE~G~r 39 (67)
T d2auwa1 4 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHK 39 (67)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 999999999599999999995998999999986999
No 21
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=95.74 E-value=0.0099 Score=34.78 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 77558999999999999649998899998289987988997
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
..||.+++.++ .+|++ .|.|.+++|+..|||.+||.+|.
T Consensus 4 ~~lt~~q~~~a-~~l~~-~G~s~~~iA~~~gVSr~TiYry~ 42 (47)
T d1ijwc_ 4 RAINKHEQEQI-SRLLE-KGHPRQQLAIIFGIGVSTLYRYF 42 (47)
T ss_dssp CSSCHHHHHHH-HHHHH-TTCCHHHHHHHHTCCHHHHHHHS
T ss_pred CCCCHHHHHHH-HHHHH-CCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 85999999999-99998-89979999999796999998557
No 22
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.10 E-value=0.026 Score=32.05 Aligned_cols=42 Identities=12% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 899999999999964999889999828998798899751578
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~ 47 (223)
...|.+-|+..+.+++++|++.|+.+|+|++.||+|-+++.+
T Consensus 26 ~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~ 67 (94)
T d1ic8a2 26 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTP 67 (94)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 999999999999986885999999980159999999827998
No 23
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=95.08 E-value=0.056 Score=29.90 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999964999889999828998798899751578875577989999987321875210000
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~ 74 (223)
.+.++..+++-.+.-.+||..+|-.|.|+-.|+++.+- ...+..|-||+++++.++.-+..
T Consensus 7 ae~lk~rreqvkmdhaalas~lgetpetvaawengegg----eltltqlg~ia~~lgtsigaltp 67 (71)
T d2bnma1 7 AELLKDRREQVKMDHAALASLLGETPETVAAWENGEGG----ELTLTQLGRIAHVLGTSIGALTP 67 (71)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCT----TCBHHHHHHHHHHTTSCTGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC----EEEHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999997111999999976890678886358875----05299988899997144123279
No 24
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=94.74 E-value=0.02 Score=32.75 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=40.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999996499988999982899879889975157887557798999998732187521000
Q gi|254780444|r 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 (223)
Q Consensus 13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~ 73 (223)
|.+.++++|+|-++|++..|++++|+.+... ..+|+.|.+ ||+++|+.+..+-
T Consensus 14 I~AaL~krG~sLa~lsr~~gls~stl~naL~------rp~pKgEri--IA~aLg~~P~eIW 66 (74)
T d1nera_ 14 VIAGLKKRKLSLSALSRQFGYAPTTLANALE------RHWPKGEQI--IANALETKPEVIW 66 (74)
T ss_dssp HHHHHTTSSCCHHHHHHHHSCCHHHHHHTTT------SSCHHHHHH--HHHHTTSCHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC------CCCHHHHHH--HHHHHCCCHHHHC
T ss_conf 9999999688799999990998789999983------778589999--9999785988959
No 25
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=94.39 E-value=0.08 Score=28.91 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 9775589999999999996499---98899998289987988997
Q gi|254780444|r 1 MTSFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 1 ~~~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
|..-++++|..+-.++..+.|+ |-.++|+++|++++++.++.
T Consensus 1 Mr~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 45 (74)
T d1v7ba1 1 MRTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHF 45 (74)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf 968999999999999999859563579999988496922385507
No 26
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.17 E-value=0.072 Score=29.20 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 77558999999999999649998899998289987988997515788755779899999873218752100
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l 72 (223)
+..++.++-+.|-....++|||-+++|+.+|+++..+.....|-.. .+.+...++++.++.+-+..
T Consensus 7 ~~~~r~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~-----l~~~~A~~l~~~L~L~~e~~ 72 (86)
T d1dwka1 7 NRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQA-----LPADAARLVGAKLDLDEDSI 72 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSC-----CCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC-----CCHHHHHHHHHHCCCCHHHH
T ss_conf 4426999999999999983998999998959889999999845788-----99999999999749999999
No 27
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.16 E-value=0.057 Score=29.88 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 7755899999999999964999889999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.||.++=.+.|+.+-....++|+++|+..||+.+||+.|.+.
T Consensus 6 k~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn 48 (66)
T d1hlva1 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 3377999999999998087210999999959976479999987
No 28
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.81 E-value=0.027 Score=31.92 Aligned_cols=41 Identities=7% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHH
Q ss_conf 977558999999999999649-99889999828998798899
Q gi|254780444|r 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 1 ~~~~~~~~i~~~i~~l~~~~g-ls~~~lA~~~Gv~~~ti~~~ 41 (223)
|+++..++...-|+.|.+..+ +|..+||+.+|||..||.+.
T Consensus 1 M~~~k~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rd 42 (65)
T d1j5ya1 1 MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQD 42 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 960099999999999998599785999999979899999999
No 29
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=93.74 E-value=0.081 Score=28.89 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 7558999999999999649998899998289987988997515
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
.||-=++..++++|.++ |+|+.++|+++|.+.++|+++.+-.
T Consensus 13 ~L~p~e~A~a~~~l~~~-g~s~~eiA~~~G~s~~~V~~~l~L~ 54 (114)
T d1r71a_ 13 ELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLL 54 (114)
T ss_dssp CCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999999999999880-9989999999777299999999996
No 30
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=93.59 E-value=0.051 Score=30.18 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 55899999999999964999889999828998798899751
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
.|.+-=.++++-..+..|.|.+++|+..||+++||.+|.+.
T Consensus 6 Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~ 46 (89)
T d2jn6a1 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIK 46 (89)
T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999829985999999979898899999999
No 31
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=93.46 E-value=0.063 Score=29.60 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 75589999999999996499---98899998289987988997
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
-+|+++|.++--++..+.|+ |-.++|+++|++++++.++.
T Consensus 2 g~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF 44 (72)
T d1zk8a1 2 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV 44 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 7239999999999999869775669999999597999998988
No 32
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=93.24 E-value=0.11 Score=28.11 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 55899999999999964999889999828998798899751
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
|+--+-..++++|+ +.|+|+.++|+++|.|+++|++.-+-
T Consensus 3 L~piEeA~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrL 42 (93)
T d1vz0a1 3 LSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRL 42 (93)
T ss_dssp CCHHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 98999999999999-84999999999985146999999989
No 33
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=93.08 E-value=0.12 Score=27.73 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
|.|+|.++.-.|..+.|+ |-.++|+++|++++++.++.
T Consensus 2 t~e~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F 42 (69)
T d2np5a1 2 SPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHF 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 49999999999999849140679999988398887998888
No 34
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=92.82 E-value=0.071 Score=29.26 Aligned_cols=40 Identities=13% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCCC--HHHHHHHHHHHHHHCCCCH--HHHHHHHCC-CHHHHHHH
Q ss_conf 7755--8999999999999649998--899998289-98798899
Q gi|254780444|r 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGL-DPTSFNKS 41 (223)
Q Consensus 2 ~~~~--~~~i~~~i~~l~~~~gls~--~~lA~~~Gv-~~~ti~~~ 41 (223)
++|| ..+|+.+|....++.|.+| .++|+.+|+ |++++.++
T Consensus 1 ~~LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~ 45 (71)
T d1jhfa1 1 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH 45 (71)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 987999999999999999982889889999977299999999999
No 35
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=92.63 E-value=0.2 Score=26.28 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 589999999999996499---988999982899879889975
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~~ 43 (223)
|+++|.++-.+|..+.|+ |-.++|+.+|++++++.++..
T Consensus 5 tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~ 46 (73)
T d2fx0a1 5 TMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 46 (73)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999999999999998693517699999987848649998884
No 36
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=92.52 E-value=0.1 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 558999999999999649---998899998289987988997
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
-|+++|.++--++..+.| +|-.++|+++|++..++.++.
T Consensus 4 ~tre~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F 45 (79)
T d2fbqa1 4 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHF 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 899999999999999869350409999999882855787877
No 37
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=92.30 E-value=0.18 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649---998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+++|.++-.++..++| +|-.++|+++|++++++.++.
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F 45 (74)
T d2g7sa1 5 KADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHF 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf 99999999999999859150679999998781841698888
No 38
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=91.95 E-value=0.17 Score=26.86 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 775589999999999996499---98899998289987988997
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
..+|+++|.++--.|..+.|+ |-.++|+++|++++++.++.
T Consensus 2 p~~tr~~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF 45 (68)
T d2g7la1 2 PALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYV 45 (68)
T ss_dssp CCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 80359999999999999849030789999999782876762877
No 39
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=91.70 E-value=0.12 Score=27.69 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=33.2
Q ss_pred CCHHHHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 55899999-9999999649998899998289987988997
Q gi|254780444|r 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~-~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
|++++|.+ +++-+.++-++|-.++|+.+|++++++.++.
T Consensus 1 l~R~~Il~aa~~l~~~~G~~ti~~Ia~~agvs~~~iY~~F 40 (65)
T d2g7ga1 1 LDRERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHA 40 (65)
T ss_dssp CCHHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf 9899999999999978679789999988570613131158
No 40
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=91.63 E-value=0.26 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 5589999999999996499---98899998289987988997
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
-+++.|..+.-.+..+.|+ |-.++|+++|++++++.++.
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F 45 (69)
T d2fq4a1 4 ETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWW 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 999999999999999839240779999999785887999998
No 41
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=91.48 E-value=0.32 Score=25.04 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 5589999999999996499---98899998289987988997
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
-|+++|..+--.+..+.|+ |-.++|+++|++++++.++.
T Consensus 5 ~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F 46 (75)
T d3c07a1 5 QTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYF 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 999999999999999749140779999998793987999898
No 42
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=91.41 E-value=0.29 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649---998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++--++..+.| +|-+++|+++|++.+++.++.
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F 48 (78)
T d2o7ta1 8 RREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNF 48 (78)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999849140679999988399887999988
No 43
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=91.23 E-value=0.075 Score=29.11 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 775589999999999996499---98899998289987988997
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
+..|.+.|..+..+|..+.|+ |-.++|+++|++++++.++.
T Consensus 4 ~~~t~~~I~~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F 47 (71)
T d2iu5a1 4 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYF 47 (71)
T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf 19999999999999999849640779999987571645897776
No 44
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=91.07 E-value=0.2 Score=26.30 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHH
Q ss_conf 775589999999999996499-98899998289987988997
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gl-s~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+-+.|+-+++|-.|.++.|- +.++||+.+|++++|++..-
T Consensus 1 tT~s~EdYLk~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mi 42 (61)
T d2ev0a1 1 TTPSMEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMV 42 (61)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 985299999999999835897509999999589951599999
No 45
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=91.05 E-value=0.35 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 5589999999999996499---98899998289987988997
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
.++++|.++.-++..+.|+ |-.++|+.+|++++++.++.
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F 47 (68)
T d2id3a1 6 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRW 47 (68)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 999999999999999849340779999999786887999998
No 46
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=91.00 E-value=0.32 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++--++..+.|+ |-.++|+.+|++++++.++.
T Consensus 7 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F 47 (77)
T d2gfna1 7 RRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYF 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999859040579999998788877998888
No 47
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=90.87 E-value=0.23 Score=25.98 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++-.++..+.|+ |..++|+.+|++++++.++.
T Consensus 10 ~r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F 50 (79)
T d2oi8a1 10 VRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYF 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHC
T ss_conf 99999999999999869030679999998679977445516
No 48
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.82 E-value=0.18 Score=26.60 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 999889999828998798899751578875577989999987321875210
Q gi|254780444|r 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 (223)
Q Consensus 21 gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~ 71 (223)
..|..++|+++|+|++|+++..++... -+.-..+.+.++++.+|-.++.
T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l~~~~~--vs~~tr~rI~~~a~~lgY~pn~ 50 (59)
T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVVNQASH--VSAKTREKVEAAMAELNYIPNR 50 (59)
T ss_dssp CCCHHHHHHTTTSCHHHHHHHHTTCSS--CCTHHHHHHHHHHHHHTCCCCH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHCCCCCH
T ss_conf 888999998979799999999779986--7999999999999998898699
No 49
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.67 E-value=0.23 Score=25.89 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 998899998289987988997515788-755779899999873218752100
Q gi|254780444|r 22 LTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETICQL 72 (223)
Q Consensus 22 ls~~~lA~~~Gv~~~ti~~~~~~~~~g-~~r~p~~~~l~kia~~~~v~~~~l 72 (223)
+|-.++|+.+|+|.+|+|+..++.... +-..-..+.+.++++.+|-.++..
T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~ 52 (59)
T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (59)
T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9799999997969999999984998767579999999999999988796999
No 50
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=90.66 E-value=0.38 Score=24.51 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++--.+..++|+ |-.++|+.+|++++++.++.
T Consensus 5 rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F 45 (72)
T d1pb6a1 5 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYF 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999859250679999998697867999888
No 51
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=90.64 E-value=0.24 Score=25.76 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHH---HHHHHHHCCCCCCC
Q ss_conf 9998899998289987988997515788755779899---99987321875210
Q gi|254780444|r 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAATNETICQ 71 (223)
Q Consensus 21 gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~---l~kia~~~~v~~~~ 71 (223)
++|-.++|+++|+|.+|+++..++... .+-++ +.++++.+|-.++.
T Consensus 1 NvTi~dvA~~agvS~~TVSr~Ln~~~~-----Vs~~tr~rV~~aa~~lgY~pn~ 49 (57)
T d2hsga1 1 NVTIYDVAREASVSMATVSRVVNGNPN-----VKPSTRKKVLETIERLGYRPNA 49 (57)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTT-----SCHHHHHHHHHHHHHHTCCSCH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCCCCCH
T ss_conf 969999998989599999999689886-----7989999999999998869799
No 52
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=90.63 E-value=0.22 Score=26.10 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+++|.++--++..++|+ |..++|+++|++++++.++.
T Consensus 3 tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F 43 (68)
T d2d6ya1 3 TKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYY 43 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999859250679999988784662898887
No 53
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=90.59 E-value=0.47 Score=23.91 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++--.|..+.|+ |-.++|+++|++++++.++.
T Consensus 2 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F 42 (71)
T d1jt6a1 2 LKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHF 42 (71)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999859140679999998785875998888
No 54
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=90.56 E-value=0.16 Score=26.88 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=31.4
Q ss_pred CCCHHHHHHH-HHHHHHHC---CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 7558999999-99999964---9998899998289987988997
Q gi|254780444|r 3 SFSHKKIWEA-IDRMAERH---NLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 3 ~~~~~~i~~~-i~~l~~~~---gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.+|+++|.++ ++-+.++. ++|-.++|+++|++++++.++.
T Consensus 1 k~tr~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF 44 (68)
T d1z0xa1 1 KLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYF 44 (68)
T ss_dssp CCSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 95899999999999987679231679999998772656899962
No 55
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=90.49 E-value=0.23 Score=25.98 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
+++.|.++-..+..+.|+ |-+++|+++|++++++.++.
T Consensus 4 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 44 (73)
T d1t56a1 4 RELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYF 44 (73)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999759150779999998698888998888
No 56
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.47 E-value=0.27 Score=25.49 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHC------CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999999999964999889999828------99879889975157887557798999998732187521
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~G------v~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~ 70 (223)
.....+..|-..|+||.+.+.++| .|++||++.++-. .+..++.|+-.++..|+.
T Consensus 12 Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~-------LS~kn~~kLkP~L~~WL~ 72 (75)
T d1e3oc2 12 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN-------LSFKNMSKLKPLLEKWLN 72 (75)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC-------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH
T ss_conf 9999998788436558999999998717502588999999724-------579889988999999987
No 57
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=90.25 E-value=0.53 Score=23.60 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649--998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g--ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+++|.++-.+|..+.| .|-.++|+++|++.+++.++.
T Consensus 2 tr~~Il~aA~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F 41 (70)
T d2hkua1 2 TRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYYY 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHCC
T ss_conf 6999999999998761357449999988788853687308
No 58
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=90.20 E-value=0.51 Score=23.70 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 75589999999999996499---98899998289987988997
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
.-|+++|..+-..+..+.|+ |-.++|+++|++++++.++.
T Consensus 4 ~~~r~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F 46 (71)
T d1ui5a1 4 EQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHF 46 (71)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999999999999999859462679999998794876999898
No 59
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=90.13 E-value=0.4 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499--98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl--s~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+++|.++--.|..+.|+ |-.++|+.+|++.+++.++.
T Consensus 13 tr~~Il~aa~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F 52 (88)
T d1t33a1 13 AKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYF 52 (88)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCCC
T ss_conf 9999999999999875401679999988399844310019
No 60
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.08 E-value=0.27 Score=25.50 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=30.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH---HHHHHHHHCCCCCCC
Q ss_conf 9889999828998798899751578875577989---999987321875210
Q gi|254780444|r 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---SIFKILAATNETICQ 71 (223)
Q Consensus 23 s~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~---~l~kia~~~~v~~~~ 71 (223)
|..++|+.+|+|.+|+|+..++... .+.+ .+.++++.+|-.++.
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~~-----vs~~tr~rV~~~a~~lgY~pn~ 48 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTRF-----VAEETRNAVWAAIKELHYSPSA 48 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSC-----CCHHHHHHHHHHHHHHTCCCCH
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCCCCCH
T ss_conf 8999999989599999999779985-----6899999999999998889799
No 61
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.56 E-value=0.35 Score=24.77 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999996499988999982899879889975
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
+.++|=++.+ .|+|+.++|++.+||.+++++|.+
T Consensus 19 LR~Riv~~~~-~G~s~r~aA~rf~VS~s~v~k~l~ 52 (63)
T d1k78a1 19 VRQRIVELAH-QGVRPCDISRQLRVSHGCVSKILG 52 (63)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999-599899999995977999999999
No 62
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=89.55 E-value=0.29 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999996499988999982899879889975
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
+.|.+|. +.|++++++|+.+|++.+|+.+.-+
T Consensus 9 ~~V~~L~-~~G~gat~IAk~lgI~R~SVYR~L~ 40 (43)
T d1gdta1 9 DAVLNMW-QQGLGASHISKTMNIARSTVYKVIN 40 (43)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999-9489899999997987999999986
No 63
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=89.29 E-value=0.33 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..-++.++..-.+|.++||+.+|++++|+++.
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~ 40 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESELAPASITKI 40 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999859948999999988788789999
No 64
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=89.22 E-value=0.36 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649---998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|..+.-+|..+.| +|-.++|+.+|++.+++.++.
T Consensus 3 rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F 43 (72)
T d2g3ba1 3 RRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHF 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999839240779999988596977999888
No 65
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=88.86 E-value=0.35 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 5589999999999996499---98899998289987988997
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
.|+++|.++--.+..+.|+ |-.++|+++|++++++.++.
T Consensus 5 ~tr~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F 46 (75)
T d2hyja1 5 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHF 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 999999999999999759030769999998890989998888
No 66
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.83 E-value=0.24 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999649998899998289987988997
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
...-++.++++..+|.++||+.+|+|++|+++.-
T Consensus 7 ~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv 40 (70)
T d1z6ra1 7 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIV 40 (70)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999499289999999894999999999
No 67
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=88.33 E-value=0.46 Score=24.00 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++--.+..+.|+ |-.++|+++|++++++.++.
T Consensus 12 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 52 (81)
T d1rkta1 12 RQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYF 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999859251779999998694988998888
No 68
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=88.01 E-value=0.54 Score=23.53 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=30.5
Q ss_pred CHHHH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999-999999999649998899998289987988997
Q gi|254780444|r 5 SHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i-~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
+-+++ .+.|...+++.|.+.++.|+.+||+.+|+.+-.
T Consensus 16 ~l~~~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkm 54 (60)
T d1umqa_ 16 SADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 54 (60)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999999966859999999898899999999
No 69
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=87.88 E-value=0.55 Score=23.50 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649-998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g-ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
|.|+-+++|-.|.++.| .+.+++|+.+|++++|++..-
T Consensus 6 s~EdYL~~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mv 44 (63)
T d2isya1 6 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTV 44 (63)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 899999999999855897709999999689944399999
No 70
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=87.86 E-value=0.44 Score=24.12 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649---998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.+++|.++--.+..+.| +|-.++|+.+|++.+++.++.
T Consensus 2 r~~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F 42 (72)
T d1vi0a1 2 KYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYF 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 89999999999999859041559999998794987998888
No 71
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=87.72 E-value=0.18 Score=26.64 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH------HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999999------64999889999828998798899
Q gi|254780444|r 8 KIWEAIDRMAE------RHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 8 ~i~~~i~~l~~------~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+-+.+|.++.. +.++|+++||+.+|++++++++.
T Consensus 2 ~~~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~ 41 (85)
T d3ctaa1 2 QYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRI 41 (85)
T ss_dssp HHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 4999999999826015899988999999988788789999
No 72
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=87.70 E-value=0.57 Score=23.41 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999649998899998289987988997
Q gi|254780444|r 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 8 ~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
++...|=++. +.|+++.++|+..|++.+++++|.
T Consensus 20 dlR~rIv~~~-~~G~s~r~iA~~~~VS~~tV~k~l 53 (123)
T d1pdnc_ 20 NIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKIL 53 (123)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999-804899999999896999999999
No 73
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=87.61 E-value=0.43 Score=24.19 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHC------CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 999999999964999889999828------998798899751578875577989999987321875210
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~G------v~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~ 71 (223)
.....+..|-..|+||.+...++| .|++||.+.++-. .+..++.|+-..+..|+.+
T Consensus 8 Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~-------LS~kn~~klkPiL~~WL~e 69 (72)
T d1au7a2 8 FANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ-------LSFKNACKLKAILSKWLEE 69 (72)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC-------SBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHH
T ss_conf 9999998774268629999999998618655503778888515-------4798899889999999988
No 74
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=87.44 E-value=0.47 Score=23.92 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 58999999999999649---998899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
++++|.++-.+|..+.| +|..++|+.+|++++++.++.
T Consensus 4 rR~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F 44 (75)
T d2id6a1 4 KRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYF 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999839351679999988499888998888
No 75
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=87.07 E-value=0.27 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 589999999999996499---98899998289987988997
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+++|.++--+|..+.|+ |-.++|+.+|++.+++.++.
T Consensus 3 tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F 43 (73)
T d1sgma1 3 SREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFF 43 (73)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHST
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999849241779999998688877999985
No 76
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=87.06 E-value=0.24 Score=25.86 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 5589999999999996499---98899998289987988997
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
.|+++|.++--.+..+.|+ |-.++|+.+|++.+++.++.
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F 48 (76)
T d2fd5a1 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHF 48 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf 999999999999999849130569999998389955004208
No 77
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=86.26 E-value=0.96 Score=21.93 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 89999999999996499---98899998289987988997
Q gi|254780444|r 6 HKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
+++|..+--.+..+.|+ |-.++|+.+|++++++.++.
T Consensus 2 R~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F 41 (70)
T d2gena1 2 KDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHF 41 (70)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999999999999859240879999998795877999898
No 78
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=86.20 E-value=0.61 Score=23.19 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..+...-++|+++||+.+|++++++++.
T Consensus 33 ~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~ 64 (139)
T d2a61a1 33 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGL 64 (139)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999769989999999839881442699
No 79
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=85.98 E-value=0.39 Score=24.42 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999649-99889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHN-LTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~g-ls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..+..|.++.| +|+++||+.+|++++++++.
T Consensus 24 ~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~ 56 (109)
T d2d1ha1 24 VAVLLKMVEIEKPITSEELADIFKLSKTTVENS 56 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999997698988999999988567699999
No 80
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=85.96 E-value=0.56 Score=23.43 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999999649---998899998289987988997
Q gi|254780444|r 7 KKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 7 ~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
++|..+--++..+.| +|-.++|+++|++++++.++.
T Consensus 2 ~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F 40 (62)
T d2vkva1 2 SKVINSALELGNEVGIEGLTTRKLAQKLGVEQPTLYWHV 40 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 998999999999839351789999988098888999888
No 81
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.19 E-value=1.1 Score=21.60 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-HCCCHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf 8999999999999649998899998-289987988997515788755-779899999873218752
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNETI 69 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~-~Gv~~~ti~~~~~~~~~g~~r-~p~~~~l~kia~~~~v~~ 69 (223)
-.+|...|...+++++++|.-||+. +|.+|.+++..-+....-++. .-..+++.++-+.++.+.
T Consensus 12 T~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp~~~~~~sg~e~~~rm~~wL~lPe 77 (88)
T d2csfa1 12 TAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQ 77 (88)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHH
T ss_conf 999999999999994977999999998318077999980899952231778899999999981748
No 82
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=85.10 E-value=0.47 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999999996499988999982899879889
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNK 40 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~ 40 (223)
.-|+.|.+...+|.+++|+.+|++++++.+
T Consensus 9 ~IL~~L~~n~r~s~~~iA~~lgis~~tv~~ 38 (63)
T d2cfxa1 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (63)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999983999999999998968789999
No 83
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=85.04 E-value=0.98 Score=21.85 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHC-----------CCCHHHHHHHHCCCHHHHHHH----HHCC----CCCCCCCCCHHHHHHHHH
Q ss_conf 899999999999964-----------999889999828998798899----7515----788755779899999873
Q gi|254780444|r 6 HKKIWEAIDRMAERH-----------NLTPSGLARKAGLDPTSFNKS----KRFG----IEGRNRWPSTESIFKILA 63 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~-----------gls~~~lA~~~Gv~~~ti~~~----~~~~----~~g~~r~p~~~~l~kia~ 63 (223)
+++|...|-.|.++. .+|+.+||..+|+++.|+++. ++.+ ..++-.-...+.|.++++
T Consensus 3 ~~Rla~~Ll~l~~~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~~~i~I~d~~~L~~~a~ 79 (81)
T d2gaua1 3 RGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTAR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHH
T ss_conf 89999999999998399889977860689999999979989999999999998997896399999838999999985
No 84
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=84.79 E-value=0.51 Score=23.70 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..-|..|.+..-+|.++||+.+|+|.+||.+.
T Consensus 8 ~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~ 39 (63)
T d1biaa1 8 LKLIALLANGEFHSGEQLGETLGMSRAAINKH 39 (63)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999789587999999989399999999
No 85
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=84.68 E-value=0.58 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=23.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999649998899998289987988997
Q gi|254780444|r 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
|+.+++ ..+|.++||+.+|++++|+++.-
T Consensus 5 l~~i~~-~pisr~eLa~~~gls~~TVs~~v 33 (62)
T d2hoea1 5 LKRIMK-SPVSRVELAEELGLTKTTVGEIA 33 (62)
T ss_dssp HHHHHH-SCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999997-89699999999893999999999
No 86
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=84.51 E-value=0.25 Score=25.68 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 55899999999999964999889999828998798899
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
|+++.=..-+..|.++.+++.++||+.+|++++++|+.
T Consensus 28 Ladp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~H 65 (108)
T d1u2wa1 28 IADENRAKITYALCQDEELCVCDIANILGVTIANASHH 65 (108)
T ss_dssp HHSHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 48999999999998689914999998885572579999
No 87
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=84.28 E-value=0.92 Score=22.04 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999996-49998899998289987988997
Q gi|254780444|r 7 KKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 7 ~~i~~~i~~l~~~-~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
++..+-|+.+..+ .++|.+++|+.+|++++|+.++-
T Consensus 5 ~r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll 41 (75)
T d1mkma1 5 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYM 41 (75)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999857999899999999791999999999
No 88
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=83.94 E-value=0.89 Score=22.14 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999964999889999828998798899
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..|...+++.+.++++.|+.+|++.+|+.+-
T Consensus 52 ~~i~~aL~~~~gn~~~aA~~LGisR~tL~~k 82 (89)
T d1etxa_ 52 PLLDMVMQYTRGNATRAALMMGINRGTLRKK 82 (89)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999992996999999989789999999
No 89
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=83.87 E-value=0.84 Score=22.29 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf 89999999999996499---98899998289987988997
Q gi|254780444|r 6 HKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~ 42 (223)
++.|+++--.+..+.|+ |-.++|+++|++++++.++.
T Consensus 2 re~iL~aA~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F 41 (69)
T d2i10a1 2 DQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAF 41 (69)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999999999999879062779999998687862998888
No 90
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=83.12 E-value=0.7 Score=22.79 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHCC-----------CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999999649-----------998899998289987988997
Q gi|254780444|r 7 KKIWEAIDRMAERHN-----------LTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 7 ~~i~~~i~~l~~~~g-----------ls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.+|...|-.|.++.| +|+.+||..+|++..|+++.-
T Consensus 4 ~Rla~~Ll~l~~~~g~~~~~~~i~l~lt~~~lA~~~G~sRetvsr~L 50 (69)
T d1i5za1 4 GRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRIL 50 (69)
T ss_dssp HHHHHHHHHGGGSTTCCCCSSSCEEECCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999980998889745617899999989799799999999
No 91
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.77 E-value=1.3 Score=21.06 Aligned_cols=62 Identities=8% Similarity=0.021 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHH-HCCCHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHCCCC
Q ss_conf 999999999999649998899998-289987988997515788755-77989999987321875
Q gi|254780444|r 7 KKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNET 68 (223)
Q Consensus 7 ~~i~~~i~~l~~~~gls~~~lA~~-~Gv~~~ti~~~~~~~~~g~~r-~p~~~~l~kia~~~~v~ 68 (223)
++|...|...+++++++|.-||+. +|.++.+++..-+.-..-++. .-..++..++-.-++.+
T Consensus 4 ~eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~pkpw~~ls~sgre~f~Rm~~wL~lP 67 (83)
T d2o4aa1 4 SEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLP 67 (83)
T ss_dssp TTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999999497799999999831807799998189994154087779999999998181
No 92
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=82.35 E-value=0.56 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCC-------CCCCCCCCCHHHHHHH
Q ss_conf 9998899998289987988997515-------7887557798999998
Q gi|254780444|r 21 NLTPSGLARKAGLDPTSFNKSKRFG-------IEGRNRWPSTESIFKI 61 (223)
Q Consensus 21 gls~~~lA~~~Gv~~~ti~~~~~~~-------~~g~~r~p~~~~l~ki 61 (223)
.+++.+||+..|||+.||..|.+.+ +.|++....+..+..-
T Consensus 2 ~Vnk~~lA~iFGVS~~TI~~W~~~G~Pv~~~Gg~G~~~~fdt~~v~~W 49 (68)
T d1j9ia_ 2 EVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKW 49 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTTTCCCSSCCCSSSCCEEEHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCEECCCCCCCCEEECHHHHHHH
T ss_conf 468999999969988999999988998422799986214558999999
No 93
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=82.30 E-value=1.1 Score=21.50 Aligned_cols=37 Identities=5% Similarity=-0.062 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 55899999999999964999889999828998798899
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
||..+ +..|..+....|+|+++||+.++++++++++.
T Consensus 39 Lt~~q-~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~ 75 (162)
T d2fxaa1 39 LNINE-HHILWIAYQLNGASISEIAKFGVMHVSTAFNF 75 (162)
T ss_dssp CCHHH-HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred CCHHH-HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 99899-99996521189918999999976994031998
No 94
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=82.02 E-value=1.4 Score=20.77 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCC------------CCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999999649------------99889999828998798899
Q gi|254780444|r 7 KKIWEAIDRMAERHN------------LTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 7 ~~i~~~i~~l~~~~g------------ls~~~lA~~~Gv~~~ti~~~ 41 (223)
.+|...|-.|.+..| +|+.+||..+|+++.|+++.
T Consensus 4 ~Rla~~L~~L~~~~g~~~~~~~~i~~~lt~~elA~~~g~sretvsr~ 50 (80)
T d3e5ua1 4 IRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRV 50 (80)
T ss_dssp HHHHHHHHHHHHHHCEEETTEEECCSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999985997899728863799999999988778899999
No 95
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=80.57 E-value=1.3 Score=21.11 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999964999889999828998798899
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..+..|.+.-++|++++|+.+|++++++++.
T Consensus 24 ~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~ 54 (109)
T d1sfxa_ 24 RIYSLLLERGGMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 9999988238998999999857983559999
No 96
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=80.52 E-value=1.2 Score=21.38 Aligned_cols=32 Identities=9% Similarity=-0.130 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..+.+.-++|+++||+.+|++++++++.
T Consensus 35 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~ 66 (140)
T d2etha1 35 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNV 66 (140)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999869959999999989698799999
No 97
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=80.52 E-value=1.2 Score=21.19 Aligned_cols=40 Identities=8% Similarity=-0.015 Sum_probs=28.6
Q ss_pred HHHHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8999999-999999649998899998289987988997515
Q gi|254780444|r 6 HKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 6 ~~~i~~~-i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
...|... ++..-+-..+|..+||+++|+|++||.|.-+.-
T Consensus 20 e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kkl 60 (83)
T d2o3fa1 20 ERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSL 60 (83)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999829999988319999999798998999999995
No 98
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=80.32 E-value=0.59 Score=23.28 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..+...-|+|+++||+.+|++++++++.
T Consensus 36 ~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~ 67 (137)
T d1z91a1 36 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPM 67 (137)
T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999987589998999999979688889799
No 99
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=80.31 E-value=1.3 Score=21.09 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..|..+-++|+++||+.++++++++++.
T Consensus 37 ~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~ 68 (138)
T d1jgsa_ 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRM 68 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99988687180989999999978788579999
No 100
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=80.04 E-value=0.95 Score=21.94 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999964999889999828998798899
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
.|..+....|+|+++||+.++++++++++.
T Consensus 41 vL~~l~~~~~~t~~~la~~l~~~~~~vsr~ 70 (141)
T d1lnwa_ 41 VLKLIDEQRGLNLQDLGRQMCRDKALITRK 70 (141)
T ss_dssp HHHHHHSSTTCBHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999879989999999978457379999
No 101
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=80.03 E-value=0.82 Score=22.36 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99999996499988999982899879889
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNK 40 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~ 40 (223)
.|.+.+++.+.++++.|+.+|++.+|+.+
T Consensus 55 lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~ 83 (91)
T d1ntca_ 55 LLTTALRHTQGHKQEAARLLGWGAATLTA 83 (91)
T ss_dssp HHHHHHHHTTTCTTHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999999599599999997988999999
No 102
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=80.03 E-value=0.91 Score=22.07 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99999996499988999982899879889
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNK 40 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~ 40 (223)
-|..|.+...+|.++||+++|++.+++..
T Consensus 10 IL~~L~~~~r~s~~eiA~~l~ls~~~v~~ 38 (63)
T d2cg4a1 10 ILEALMGNARTAYAELAKQFGVSPETIHV 38 (63)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999983899999999998939999999
No 103
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=80.02 E-value=1.4 Score=20.86 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999649--99889999828998798899
Q gi|254780444|r 11 EAIDRMAERHN--LTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~g--ls~~~lA~~~Gv~~~ti~~~ 41 (223)
..|..|..+.| +|+++||+.+|++++++++.
T Consensus 33 ~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~ 65 (135)
T d3broa1 33 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVL 65 (135)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999970799999999999989688689999
No 104
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=78.95 E-value=1.6 Score=20.55 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999964-999889999828998798899
Q gi|254780444|r 11 EAIDRMAERH-NLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~-gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..|..|.... ++|+++||+.+|++++++++.
T Consensus 38 ~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~ 69 (145)
T d2hr3a1 38 VVLGAIDRLGGDVTPSELAAAERMRSSNLAAL 69 (145)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999998599979999999979898899999
No 105
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=78.29 E-value=0.94 Score=21.99 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999964999889999828998798899
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..|..+.++-|+|+++||+.++++++++++.
T Consensus 33 ~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~ 63 (144)
T d1lj9a_ 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARA 63 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999998289989999999878247169999
No 106
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.17 E-value=1.9 Score=19.97 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHH
Q ss_conf 5589999999999996499988999982-899879889975
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKR 43 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~-Gv~~~ti~~~~~ 43 (223)
|--++|...|...+++++++|.-||+.+ |.++.|++..-+
T Consensus 9 ldT~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~ 49 (87)
T d1x2la1 9 LDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA 49 (87)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 79999999999999994987999999998308478999984
No 107
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=77.93 E-value=1.3 Score=20.99 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..|...-++++++||+.+|++++++++.
T Consensus 33 ~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~ 64 (136)
T d2fbia1 33 WRVIRILRQQGEMESYQLANQACILRPSMTGV 64 (136)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999769989999999988789889999
No 108
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=77.56 E-value=1.2 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999996499988999982899879889
Q gi|254780444|r 13 IDRMAERHNLTPSGLARKAGLDPTSFNK 40 (223)
Q Consensus 13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~ 40 (223)
|..|.+..-+|.++||+++|++++++.+
T Consensus 9 l~~L~~n~r~s~~~lA~~~gls~~~v~~ 36 (60)
T d1i1ga1 9 LEILEKDARTPFTEIAKKLGISETAVRK 36 (60)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999884999999999998929999999
No 109
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=76.76 E-value=1.7 Score=20.34 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=24.9
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964-999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERH-NLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~-gls~~~lA~~~Gv~~~ti~~~ 41 (223)
|..|-.|.... |+|+++||+.+|++++++++.
T Consensus 31 ~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~ 63 (137)
T d2fbha1 31 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARL 63 (137)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999987699976999999989789899999
No 110
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=76.70 E-value=1.3 Score=20.98 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999999996499988999982899879889
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNK 40 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~ 40 (223)
.-|..|.+...+|..+||+++|++.+++..
T Consensus 7 ~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~ 36 (60)
T d2cyya1 7 KIIKILQNDGKAPLREISKITGLAESTIHE 36 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999982899999999998939999999
No 111
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=76.21 E-value=1.6 Score=20.48 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 999999649998899998289987988997515
Q gi|254780444|r 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
|....++.| |+..|+.+|+.++.|++.-+-.
T Consensus 7 L~dyv~~~G--QaKaA~~LGv~Q~AIsKAira~ 37 (61)
T d1d1la_ 7 LKDYAMRFG--QTKTAKDLGVYQSAINKAIHAG 37 (61)
T ss_dssp HHHHHHHHC--HHHHHHHHTCCTHHHHHHHHTT
T ss_pred HHHHHHHHC--HHHHHHHCCCCHHHHHHHHHCC
T ss_conf 999999977--5989998296488999999638
No 112
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=76.13 E-value=1.2 Score=21.39 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+.-|..|...-.+|.++||+.+|++++++++.
T Consensus 19 ~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~ 50 (100)
T d1ub9a_ 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHH
T ss_conf 99998760479901999999986254323099
No 113
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=75.87 E-value=1.3 Score=21.05 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..+....|+|+++||+.++++++++++.
T Consensus 38 ~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~ 69 (143)
T d1s3ja_ 38 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLM 69 (143)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999779989999999989698899999
No 114
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=74.21 E-value=1.4 Score=20.86 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=34.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCC-------CCCCCCHHHH-----HHHHHHCCCCCCCCC
Q ss_conf 998899998289987988997515788-------7557798999-----998732187521000
Q gi|254780444|r 22 LTPSGLARKAGLDPTSFNKSKRFGIEG-------RNRWPSTESI-----FKILAATNETICQLL 73 (223)
Q Consensus 22 ls~~~lA~~~Gv~~~ti~~~~~~~~~g-------~~r~p~~~~l-----~kia~~~~v~~~~l~ 73 (223)
|+-+++|+++|+++.|+..|++.+--. .-|.-+.+.+ .+.+..+|.++.++.
T Consensus 1 m~Ige~A~~~gvs~~TlR~Ye~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI~ 64 (127)
T d1q06a_ 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESG 64 (127)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9789999998929999999999279888765776761451999999999999998699999999
No 115
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=73.96 E-value=1.2 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 964999889999828998798899
Q gi|254780444|r 18 ERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 18 ~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..| +.+.+|+.+|+++++|++|
T Consensus 8 ~~FG-~~~k~A~algis~~AVsqW 30 (61)
T d1rzsa_ 8 DHFG-TQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp HHHS-SHHHHHHHHTCCHHHHHHC
T ss_pred HHHC-CHHHHHHHHCCCHHHHHHH
T ss_conf 9957-7999999969989999988
No 116
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.93 E-value=2.5 Score=19.25 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHH
Q ss_conf 5589999999999996499988999982-899879889975
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKR 43 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~-Gv~~~ti~~~~~ 43 (223)
|--.+|...|...+++++++|.-||+.+ |.++.+++...+
T Consensus 17 ldT~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~ 57 (101)
T d1wh6a_ 17 VDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS 57 (101)
T ss_dssp CCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 58999999999999994976999999998108178999984
No 117
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=73.72 E-value=2.3 Score=19.41 Aligned_cols=39 Identities=3% Similarity=0.103 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 7558999999999999649998899998289987988997
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.|+++.=+.-+..| .+..++.++||..+|++++++++.-
T Consensus 14 aL~d~~Rl~Il~~L-~~~~~~v~el~~~l~~s~~~vS~HL 52 (94)
T d1r1ua_ 14 ALGDYNRIRIMELL-SVSEASVGHISHQLNLSQSNVSHQL 52 (94)
T ss_dssp HTCSHHHHHHHHHH-HHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHCCHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 83899999999999-7299569999999887877899999
No 118
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=73.30 E-value=2.6 Score=19.15 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999649998899998289987988997
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
+.|...+++.| +.++.|+.+|++.+|+.+-.
T Consensus 24 ~~I~~aL~~~g-n~~~aA~~Lgisr~tL~rKl 54 (61)
T d1g2ha_ 24 QVLKLFYAEYP-STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp HHHHHHHHHSC-SHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999878-99999999798899999999
No 119
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=72.78 E-value=1.6 Score=20.54 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHC------------CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999999964------------999889999828998798899
Q gi|254780444|r 7 KKIWEAIDRMAERH------------NLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 7 ~~i~~~i~~l~~~~------------gls~~~lA~~~Gv~~~ti~~~ 41 (223)
++|...|-.|..+. .+|+.+||..+|+++.|+++.
T Consensus 4 ~Rla~~Ll~l~~~~g~~~~~~~~i~~~~t~~eiA~~lG~sretvsr~ 50 (80)
T d1ft9a1 4 QRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTA 50 (80)
T ss_dssp HHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999985998899717853789999999979889999999
No 120
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=72.33 E-value=2.7 Score=19.01 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHH-----------CCCCHHHHHHHHCCCHHHHHHHH----HCC----CCCCCCCCCHHHHHHHHHH
Q ss_conf 89999999999996-----------49998899998289987988997----515----7887557798999998732
Q gi|254780444|r 6 HKKIWEAIDRMAER-----------HNLTPSGLARKAGLDPTSFNKSK----RFG----IEGRNRWPSTESIFKILAA 64 (223)
Q Consensus 6 ~~~i~~~i~~l~~~-----------~gls~~~lA~~~Gv~~~ti~~~~----~~~----~~g~~r~p~~~~l~kia~~ 64 (223)
.+++...|-.|.+. ..+|+.+||..+|+++.|+++.- +.+ ..++-.-...+.|.++++.
T Consensus 3 ~~Rla~~Ll~l~~~~~~~~~~g~i~i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~~~~~i~I~d~~~L~~~a~~ 80 (82)
T d2zcwa1 3 KNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAES 80 (82)
T ss_dssp HHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHH
T ss_conf 899999999988872887889847605899999999898899999999999989988964999998489999999874
No 121
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=72.09 E-value=0.85 Score=22.27 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999964999889999828998798899
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+..|..+....|+|+++||+.+|++++++++.
T Consensus 37 ~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~ 68 (136)
T d2bv6a1 37 FLVLTILWDESPVNVKKVVTELALDTGTVSPL 68 (136)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999997289979999999979788379999
No 122
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=71.07 E-value=0.58 Score=23.35 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 4999889999828998798899
Q gi|254780444|r 20 HNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 20 ~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
.|+|+++||+.+|++++++++.
T Consensus 78 ~~lt~~eLa~~l~i~~~tvsr~ 99 (172)
T d2fbka1 78 EGLRPTELSALAAISGPSTSNR 99 (172)
T ss_dssp SCBCHHHHHHHCSCCSGGGSSH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9968999999978678579999
No 123
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=70.33 E-value=1.9 Score=19.95 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999649998899998289987988997
Q gi|254780444|r 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
|..| .+..++.++||+.+|++++++++.-
T Consensus 29 l~~L-~~~~~~v~ela~~l~is~stvS~HL 57 (98)
T d1r1ta_ 29 LSLL-ARSELCVGDLAQAIGVSESAVSHQL 57 (98)
T ss_dssp HHHH-TTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHH-HCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999-8199679999999892988999999
No 124
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=70.08 E-value=3 Score=18.69 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=26.0
Q ss_pred CCHHHH---HHHHH--HHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 558999---99999--9999649998899998289987988997
Q gi|254780444|r 4 FSHKKI---WEAID--RMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 4 ~~~~~i---~~~i~--~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
+|.+++ ..+++ +++.+-..|+.++|+.+|+|.+||++--
T Consensus 36 lT~~E~~~la~R~~ia~~L~~G~~s~reI~~~~gvs~aTItR~s 79 (101)
T d1jhga_ 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGS 79 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999999999089679999999698757788999
No 125
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.59 E-value=3.1 Score=18.62 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHH
Q ss_conf 89999999999996499988999982-899879889975
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKR 43 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~-Gv~~~ti~~~~~ 43 (223)
-.+|...|...+++++++|.-||+.+ |.++.+++...+
T Consensus 29 T~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~ 67 (111)
T d1wh8a_ 29 TYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLS 67 (111)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999985832999999998008278999983
No 126
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=69.14 E-value=1 Score=21.75 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 899999999999964999889999828998798899
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
++.+...++.|....+.|..+||+.+|++...|++.
T Consensus 9 ~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~ 44 (70)
T d1sfua_ 9 FSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQ 44 (70)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 999999997458777704999999959889898899
No 127
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=68.54 E-value=3.3 Score=18.48 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 499988999982899879889975
Q gi|254780444|r 20 HNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 20 ~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
.|+|..++|+.+|+|+.|+..+.+
T Consensus 20 ~G~s~~eIA~~l~iS~~TV~~~~~ 43 (67)
T d1a04a1 20 QGLPNKMIARRLDITESTVKVHVK 43 (67)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 679989999997888889999999
No 128
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=68.53 E-value=0.1 Score=28.18 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=23.4
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 9649998899998289987988997515
Q gi|254780444|r 18 ERHNLTPSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 18 ~~~gls~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
+++|++|+++|+.+|.|.+.|+-.++..
T Consensus 2 R~kGltQ~eIA~~LgTSraNIs~IEk~A 29 (122)
T d1nr3a_ 2 RERGWSQKKIARELKTTRQNVSAIERKA 29 (122)
T ss_dssp CCCSCSSCSTHHHHHHCCSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 6256779999999776588999999999
No 129
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=67.98 E-value=1.9 Score=19.99 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 899999999999964------999889999828998798899
Q gi|254780444|r 6 HKKIWEAIDRMAERH------NLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~------gls~~~lA~~~Gv~~~ti~~~ 41 (223)
+++|...|-.+.++. .+|+.+||..+|+++.|+++.
T Consensus 6 ~~Rla~~Ll~~~~~~~~~~~i~lt~~elA~~lg~sr~tvsr~ 47 (73)
T d1zyba1 6 KSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKT 47 (73)
T ss_dssp HHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999845650898675069999998979889999999
No 130
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=67.68 E-value=2.1 Score=19.77 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8999999999999649998899998
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARK 30 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~ 30 (223)
-|++.++++.+++|.|+|.|++-..
T Consensus 10 se~~~~~lek~a~e~g~sksa~~~~ 34 (43)
T d2cpga_ 10 SESVLENLEKMAREMGLSKSAMISV 34 (43)
T ss_dssp EHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 3889989999999808639999999
No 131
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.68 E-value=3.4 Score=18.37 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHCCC
Q ss_conf 89999999999996499988999982-8998798899751578-87557798999998732187
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNE 67 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~-Gv~~~ti~~~~~~~~~-g~~r~p~~~~l~kia~~~~v 67 (223)
-++|...|...+++++++|+-||+.+ |.++.|++..-+.-.. .+.+ +..+...++.+-++.
T Consensus 4 T~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~kPKPW~~l~-~gre~y~RM~~wL~~ 66 (80)
T d1s7ea2 4 TKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMWKWLQE 66 (80)
T ss_dssp SHHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTTSCCTTCCCS-SCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHC-CHHHHHHHHHHHHCC
T ss_conf 999999999999995987999999997438078999883999703213-256999999999838
No 132
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=67.36 E-value=1.9 Score=20.02 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98899998289987988997515788755779899999873
Q gi|254780444|r 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 (223)
Q Consensus 23 s~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~ 63 (223)
-|..+|++.|+..+.|++|+++- .|....+..+++
T Consensus 22 Gq~k~A~amGv~esqiSRwK~~f------~~q~smlLAvLE 56 (78)
T d1zs4a1 22 GTEKTAEAVGVDKSQISRWKRDW------IPKFSMLLAVLE 56 (78)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT------HHHHHHHHHHHT
T ss_pred CCHHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHHH
T ss_conf 20468999399899998998706------889999999999
No 133
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=67.16 E-value=2.4 Score=19.36 Aligned_cols=32 Identities=16% Similarity=0.449 Sum_probs=24.1
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999-64999889999828998798899
Q gi|254780444|r 10 WEAIDRMAE-RHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~-~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
|..|..+.. +.++|+++||+..+++++++++.
T Consensus 34 ~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~ 66 (140)
T d3deua1 34 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRT 66 (140)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999987499956999999978777678899
No 134
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=67.11 E-value=2.4 Score=19.34 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCC-------CCCCCCHHHHH-----HHHHHCCCCCCCCCCCC
Q ss_conf 9998899998289987988997515788-------75577989999-----98732187521000011
Q gi|254780444|r 21 NLTPSGLARKAGLDPTSFNKSKRFGIEG-------RNRWPSTESIF-----KILAATNETICQLLDLP 76 (223)
Q Consensus 21 gls~~~lA~~~Gv~~~ti~~~~~~~~~g-------~~r~p~~~~l~-----kia~~~~v~~~~l~~~~ 76 (223)
.+|-+++|+++|+++.|+..|++.+.-. .-|.-+.+.+. +.+..+|.++.++....
T Consensus 2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI~~~l 69 (109)
T d1r8da_ 2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEML 69 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 62299999998969999999988689587655776504562999999999999998699999999998
No 135
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=66.23 E-value=1.7 Score=20.26 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 55899999999999964999889999828998798899
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
|+++.=..-|+.| .+..+|.++||+.+|++++++++.
T Consensus 12 l~~~~R~~Il~~L-~~~~~~~~ela~~l~~s~~~v~~H 48 (194)
T d2p4wa1 12 LGNETRRRILFLL-TKRPYFVSELSRELGVGQKAVLEH 48 (194)
T ss_dssp HHSHHHHHHHHHH-HHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 5999999999999-808987999999989099899999
No 136
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=66.04 E-value=3.7 Score=18.16 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHC-------------CCCHHHHHHHHCCC-HHHHHHH----HHCC----CCCCCCCCCHHHHHHHHHHC
Q ss_conf 9999999999964-------------99988999982899-8798899----7515----78875577989999987321
Q gi|254780444|r 8 KIWEAIDRMAERH-------------NLTPSGLARKAGLD-PTSFNKS----KRFG----IEGRNRWPSTESIFKILAAT 65 (223)
Q Consensus 8 ~i~~~i~~l~~~~-------------gls~~~lA~~~Gv~-~~ti~~~----~~~~----~~g~~r~p~~~~l~kia~~~ 65 (223)
+|.+.|-+|.+.. .+|+.+||..+|++ ..|+++. ++.+ ..++-.-+..+.|.++|.-+
T Consensus 5 ~va~~Ll~La~~~G~~~~~g~~i~~~~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~~~~i~I~D~~~L~~~A~~~ 84 (100)
T d2bgca1 5 SICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKL 84 (100)
T ss_dssp HHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECHHHHHHHHCCC
T ss_conf 99999999999839989997387056669999998838744889999999998797889759999992899999986436
Q ss_pred CCCC
Q ss_conf 8752
Q gi|254780444|r 66 NETI 69 (223)
Q Consensus 66 ~v~~ 69 (223)
..++
T Consensus 85 de~~ 88 (100)
T d2bgca1 85 DEWF 88 (100)
T ss_dssp HHHH
T ss_pred CHHH
T ss_conf 0566
No 137
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.10 E-value=3.4 Score=18.39 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 899999999999964999889999828998798899
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
.++|..++..|....-.+..+||++.|+...-||+.
T Consensus 1 Eq~vl~~l~~lg~~~~~tA~~LA~kl~vpKk~iNr~ 36 (59)
T d2gxba1 1 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 36 (59)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 917999999628852034999999968869999999
No 138
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=65.09 E-value=3.8 Score=18.05 Aligned_cols=39 Identities=5% Similarity=0.253 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHCCC-CHHHHHHHH---C---CCHHHHHHHHH
Q ss_conf 589999999999996499-988999982---8---99879889975
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNL-TPSGLARKA---G---LDPTSFNKSKR 43 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gl-s~~~lA~~~---G---v~~~ti~~~~~ 43 (223)
..+++.++|.+|.++..+ ||.+|.+.+ | ++++|+|+.-+
T Consensus 6 kq~~~l~~I~~li~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~ 51 (78)
T d1aoya_ 6 KQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLT 51 (78)
T ss_dssp CSTTHHHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8999999999999848867899999999983985010988999999
No 139
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=65.02 E-value=2.6 Score=19.17 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999964999889999828998798899
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
-|+.| .+..+|.++||+.+|++++++++.
T Consensus 24 Il~~L-~~~~~s~~ela~~lg~s~~~v~~h 52 (190)
T d1ulya_ 24 ILKLL-RNKEMTISQLSEILGKTPQTIYHH 52 (190)
T ss_dssp HHHHH-TTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHH-HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999-819987999999989199999999
No 140
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=64.97 E-value=2.6 Score=19.09 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 99999999999964999889999828998798899751
Q gi|254780444|r 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 7 ~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+++...|+.-.. ..+|..+||+.+|+|+.++.+..+.
T Consensus 6 ~~v~~yI~~~~~-~~~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 6 HSILDWIEDNLE-SPLSLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHHTTTT-SCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999986547-9999999999989399999999999
No 141
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=64.48 E-value=2.5 Score=19.17 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=27.5
Q ss_pred CCCHHHHHHH----HHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7558999999----999999649---9988999982899879889975
Q gi|254780444|r 3 SFSHKKIWEA----IDRMAERHN---LTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 3 ~~~~~~i~~~----i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
.|+-+++..| ...++.+-| -||.++|.-+|+++.++.+|+-
T Consensus 11 ~L~~~q~~AA~~l~~Ne~~~~~~~ekktqeqiAeelGisr~tLyrWrt 58 (120)
T d2ao9a1 11 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 58 (120)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 865999999999860300110003341499999995801888988760
No 142
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=62.56 E-value=2.5 Score=19.28 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=21.0
Q ss_pred CCCCCCCCCCEEEEECCC--C-CCCCCEEEEEEECCCEE
Q ss_conf 324214878689993689--7-40588899997179689
Q gi|254780444|r 146 SMLPLYRKGDILILNSAI--Q-VNCGDRLLIKPRTGDIV 181 (223)
Q Consensus 146 SM~P~i~~Gd~vlVd~~~--~-~~~g~~v~~~~~~~~~~ 181 (223)
||.|.+.+|++|++--.. . ...-+.+..+...++++
T Consensus 12 ~m~P~L~~g~yVF~t~~~~~~~~~~l~pia~F~E~EGlT 50 (66)
T d1zvpa1 12 SMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLT 50 (66)
T ss_dssp TCEEEECSSCEEEEEECSCGGGGGGGCCSEEEEETTEEE
T ss_pred HCCCEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCEE
T ss_conf 798667899689999888545655786249999578359
No 143
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=59.91 E-value=4.7 Score=17.45 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=23.4
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999649998899998289987988997
Q gi|254780444|r 15 RMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 15 ~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.|+--.|+|.+++|..+|+|++++....
T Consensus 26 ~L~y~~~ls~~EIA~~lgiS~~aV~~~l 53 (106)
T d1s7oa_ 26 ELYYADDYSLAEIADEFGVSRQAVYDNI 53 (106)
T ss_dssp HHHHHTCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9899919999999999896999999999
No 144
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=59.40 E-value=4.8 Score=17.40 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 6499988999982899879889975
Q gi|254780444|r 19 RHNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 19 ~~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
-.|+|..++|..+|+|+.|+..+.+
T Consensus 25 ~~G~s~~eIA~~l~iS~~TV~~~~~ 49 (70)
T d1yioa1 25 IRGLMNKQIAGELGIAEVTVKVHRH 49 (70)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8289999999897979999999999
No 145
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=59.39 E-value=3.8 Score=18.07 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=21.4
Q ss_pred HHHHHHHC--CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999964--999889999828998798899
Q gi|254780444|r 13 IDRMAERH--NLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 13 i~~l~~~~--gls~~~lA~~~Gv~~~ti~~~ 41 (223)
|..+.... ++|+++||+.++++++++++.
T Consensus 39 L~~l~~~~~~~~t~~~la~~l~~~~~tvs~~ 69 (115)
T d2frha1 39 LTYISENKEKEYYLKDIINHLNYKQPQVVKA 69 (115)
T ss_dssp HHHHHHTCCSEEEHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999808999988999999979788689999
No 146
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=59.14 E-value=4.8 Score=17.37 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.1
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99996499988999982899879889975
Q gi|254780444|r 15 RMAERHNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 15 ~l~~~~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
.|+--.|+|..++|..+|++++++.....
T Consensus 31 ~l~~~~~~s~~eIA~~lgis~~tv~~~~~ 59 (71)
T d1rp3a2 31 QLIFYEELPAKEVAKILETSVSRVSQLKA 59 (71)
T ss_dssp HHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99986848999999997989999999999
No 147
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=58.90 E-value=2 Score=19.90 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 964999889999828998798899
Q gi|254780444|r 18 ERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 18 ~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
++.|+|+++||+.+|++++++++.
T Consensus 45 ~~~~~t~~ela~~l~~~~~~vs~~ 68 (115)
T d1hsja1 45 ESNEISSKEIAKCSEFKPYYLTKA 68 (115)
T ss_dssp SCSEEEHHHHHHSSCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 899948999999978885359999
No 148
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=58.56 E-value=2.8 Score=18.91 Aligned_cols=53 Identities=6% Similarity=0.019 Sum_probs=33.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCC-C-CCCCC------C---HH--HHHHHHHHCCCCCCCCCC
Q ss_conf 99889999828998798899751578-8-75577------9---89--999987321875210000
Q gi|254780444|r 22 LTPSGLARKAGLDPTSFNKSKRFGIE-G-RNRWP------S---TE--SIFKILAATNETICQLLD 74 (223)
Q Consensus 22 ls~~~lA~~~Gv~~~ti~~~~~~~~~-g-~~r~p------~---~~--~l~kia~~~~v~~~~l~~ 74 (223)
+|-+++|+.+||++.||..|++.+-- + ..|.. + .. ...+.+..+|.++..+-.
T Consensus 4 ytI~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g~sl~eIk~ 69 (118)
T d1r8ea1 4 YSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKK 69 (118)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 019999999896999999999858855345369999403548899999999999996999999999
No 149
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=58.22 E-value=3.2 Score=18.56 Aligned_cols=24 Identities=4% Similarity=-0.038 Sum_probs=20.4
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 964999889999828998798899
Q gi|254780444|r 18 ERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 18 ~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
++.|+++++||+..|++++++++.
T Consensus 46 ~~~~~~~~~ia~~l~~~~~~vs~~ 69 (125)
T d1p4xa2 46 NKNIVLLKDLIETIHHKYPQTVRA 69 (125)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 378836999999978984249999
No 150
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=57.79 E-value=5.1 Score=17.22 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999996499--988999982899879889975
Q gi|254780444|r 7 KKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 7 ~~i~~~i~~l~~~~gl--s~~~lA~~~Gv~~~ti~~~~~ 43 (223)
.+|..++.+|.++.|= |..++|..+|++...+..+..
T Consensus 10 ~ki~~a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~ 48 (77)
T d1rp3a1 10 RRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLD 48 (77)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999988697999999997949999999999
No 151
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=57.10 E-value=5 Score=17.25 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=21.9
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 6499988999982899879889975
Q gi|254780444|r 19 RHNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 19 ~~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
-.|+|..++|+.+|+|..|+..+.+
T Consensus 17 ~~G~s~~eIA~~l~iS~~TV~~~~~ 41 (65)
T d1l3la1 17 AVGKTMEEIADVEGVKYNSVRVKLR 41 (65)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9369888999997888999999999
No 152
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=57.03 E-value=5 Score=17.30 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=22.4
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 64999889999828998798899751
Q gi|254780444|r 19 RHNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 19 ~~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
-.|+|..++|+..|++..|+..+.+.
T Consensus 17 ~~G~s~~eIA~~L~is~~TV~~~~~~ 42 (67)
T d1fsea_ 17 VQDKTTKEIASELFISEKTVRNHISN 42 (67)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 83698999999988888899999999
No 153
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=56.95 E-value=2 Score=19.84 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 99999996--4999889999828998798899751
Q gi|254780444|r 12 AIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 12 ~i~~l~~~--~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
.++-+.+. ..+|-.+||+.+|+|+.++++..+.
T Consensus 8 i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~ 42 (54)
T d1d5ya1 8 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (54)
T ss_dssp HHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999874489999999999989299999999999
No 154
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=56.29 E-value=2.8 Score=18.92 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.1
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 64999889999828998798899
Q gi|254780444|r 19 RHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 19 ~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..++|+++||+.+|++++++++.
T Consensus 39 ~~plt~~ela~~l~vsk~~vs~~ 61 (151)
T d1ku9a_ 39 DKPLTISDIMEELKISKGNVSMS 61 (151)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 98928999999867770249999
No 155
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=55.17 E-value=5.6 Score=16.95 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCC-----C---HHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 775589999999999996499-----9---88999982899879889975157
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNL-----T---PSGLARKAGLDPTSFNKSKRFGI 46 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gl-----s---~~~lA~~~Gv~~~ti~~~~~~~~ 46 (223)
+.+|.+++ ++|+..-++.++ + ..+||+.+||++..|..|.....
T Consensus 22 t~ft~~Q~-~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R 73 (80)
T d1wh7a_ 22 TKFTAEQK-EKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNK 73 (80)
T ss_dssp CCCCHHHH-HHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTS
T ss_pred CCCCHHHH-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCC
T ss_conf 56899999-99999999840225696999999999997889889510030376
No 156
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=53.25 E-value=6 Score=16.75 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 49998899998289987988997515788755779899999873218
Q gi|254780444|r 20 HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 (223)
Q Consensus 20 ~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~ 66 (223)
.|++..++|+.+++|+.|+....+..-. |-.-.+...+...|...|
T Consensus 36 ~G~s~~eIA~~l~iS~~TV~~~~~~i~~-Kl~~~~~~~lv~~a~~~g 81 (87)
T d1p4wa_ 36 EGFLVTEIAKKLNRSIKTISSQKKSAMM-KLGVDNDIALLNYLSSVS 81 (87)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCC
T ss_conf 2899999987869799999999999999-849999999999999968
No 157
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=51.03 E-value=6.5 Score=16.52 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=23.7
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999649998899998289987988997
Q gi|254780444|r 15 RMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 15 ~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.|+--.|+|.+++|...|+|.+++...-
T Consensus 28 ~L~~~e~ls~~EIA~~lgiS~~aV~~~l 55 (106)
T d1xsva_ 28 ELFYLEDYSLSEIADTFNVSRQAVYDNI 55 (106)
T ss_dssp HHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999908759999999895999999999
No 158
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=50.53 E-value=1.6 Score=20.56 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999649---9988999982899879889975
Q gi|254780444|r 10 WEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 10 ~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
+++-.++..++| +|-.++|+.+|++++++.++..
T Consensus 2 l~aA~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~ 38 (65)
T d2np3a1 2 LTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYG 38 (65)
T ss_dssp HHHHHHHC---------------------------CC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 9999999998790407799999987868879998887
No 159
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.09 E-value=6.8 Score=16.43 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 75589999999999996499988999982899879889975157887557798999998732
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~ 64 (223)
.++.++-.+++..|+++.||++-++|..+.+.|.++--.+--...-+.+ .+.+.|.+|++.
T Consensus 108 k~k~~es~~~vrelL~~~~L~~fE~a~L~NLcPet~eEAkaLiPSL~~k-~~de~Lq~IL~~ 168 (176)
T d1y14a_ 108 RFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNK-ISDDELERILKE 168 (176)
T ss_dssp SCCSHHHHHHHHHHHHTTTCCHHHHHHHHHSCCSSHHHHHHHSGGGTTT-SCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_conf 5798899999999998659978999996526889999999983620246-888999999999
No 160
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=45.15 E-value=3.3 Score=18.42 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 4999889999828998798899
Q gi|254780444|r 20 HNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 20 ~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
.++|+++||+..+++++++++.
T Consensus 49 ~~~t~~eia~~~~~~~~~vs~~ 70 (125)
T d1p4xa1 49 NTLPFKKIVSDLCYKQSDLVQH 70 (125)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHH
T ss_conf 9867999999968882439999
No 161
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=42.69 E-value=8.8 Score=15.70 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCC------C-CHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999999649------9-9889999828998798899
Q gi|254780444|r 8 KIWEAIDRMAERHN------L-TPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 8 ~i~~~i~~l~~~~g------l-s~~~lA~~~Gv~~~ti~~~ 41 (223)
+|.+.|...+.... | |..+||+..|+|.+|+.+.
T Consensus 2 qi~~~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~A 42 (78)
T d3bwga1 2 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKS 42 (78)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 79999999998499999399937999999988798999999
No 162
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=42.33 E-value=7.5 Score=16.13 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5589999999999996499988999982
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKA 31 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~ 31 (223)
+|-++|.+||+. ||.++||..+
T Consensus 1 m~~eeiv~aiek------ltvaelaelv 22 (30)
T d1zavu1 1 MTIDEIIEAIEK------LTVSELAELV 22 (30)
T ss_dssp CCHHHHHHHHHH------SBHHHHHHHH
T ss_pred CCHHHHHHHHHH------HHHHHHHHHH
T ss_conf 979999999999------6199999999
No 163
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=40.55 E-value=9.4 Score=15.49 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=23.2
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999649998899998289987988997
Q gi|254780444|r 15 RMAERHNLTPSGLARKAGLDPTSFNKSK 42 (223)
Q Consensus 15 ~l~~~~gls~~~lA~~~Gv~~~ti~~~~ 42 (223)
.|+--.|+|..++|+..|++.+|+...-
T Consensus 28 ~l~~~~~~s~~eIA~~lgis~~tv~~~l 55 (68)
T d1or7a1 28 TLRELDGLSYEEIAAIMDCPVGTVRSRI 55 (68)
T ss_dssp HHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999909899999999894999999999
No 164
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.74 E-value=9.7 Score=15.41 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 589999999999996499988999982899879889975157887557798999998732
Q gi|254780444|r 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~ 64 (223)
+.++....+..++++.+|++.+.+..+.+-|++.--.+--..+-+.| .+-+.+.+|++.
T Consensus 62 ~~~es~~~~~~ll~~~~L~~~E~~~i~Nl~P~~~~El~~li~~l~~r-~see~l~~iLd~ 120 (129)
T d2c35a1 62 KNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR-FEDEELQQILDD 120 (129)
T ss_dssp CSHHHHHHHHHHHHTSSCCHHHHHHHHHHCCSSHHHHHHHCGGGTTT-SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_conf 98999999999861457899999997178989999999998876057-999999999999
No 165
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=38.78 E-value=10 Score=15.31 Aligned_cols=37 Identities=5% Similarity=0.186 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHCC------C-CHHHHHHHHCCCHHHHHHH
Q ss_conf 58999999999999649------9-9889999828998798899
Q gi|254780444|r 5 SHKKIWEAIDRMAERHN------L-TPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 5 ~~~~i~~~i~~l~~~~g------l-s~~~lA~~~Gv~~~ti~~~ 41 (223)
..++|.+.|...+..-. | |..+||+..|+|.+|+.+.
T Consensus 10 ~y~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~A 53 (100)
T d1v4ra1 10 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRA 53 (100)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999998499999398836999999988798999999
No 166
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.75 E-value=7.2 Score=16.25 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHH
Q ss_conf 89999999999996499988999982-8998798899
Q gi|254780444|r 6 HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKS 41 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gls~~~lA~~~-Gv~~~ti~~~ 41 (223)
+.+|...|+.-..+.|++..+|+.++ |++...|...
T Consensus 8 q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~a 44 (69)
T d1dpua_ 8 QNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQA 44 (69)
T ss_dssp HHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999983888568389999988169999999999
No 167
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.52 E-value=4 Score=17.91 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9775589999999999996499988999982
Q gi|254780444|r 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKA 31 (223)
Q Consensus 1 ~~~~~~~~i~~~i~~l~~~~gls~~~lA~~~ 31 (223)
|+..+.+++-++..++++++|+|..++|+.+
T Consensus 4 m~~~~~~~l~~~~~~~L~erGVt~~dIa~~v 34 (164)
T d1rfza_ 4 MSEFIMNNLEQTARRWLEERGVTVEKIAELV 34 (164)
T ss_dssp HHHHHHTSCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 7784689999999999998698899999999
No 168
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=36.27 E-value=11 Score=15.06 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHHHHHHHCC---CCHHHHHHHHCCCHHHHHH
Q ss_conf 99999999649---9988999982899879889
Q gi|254780444|r 11 EAIDRMAERHN---LTPSGLARKAGLDPTSFNK 40 (223)
Q Consensus 11 ~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~ 40 (223)
..++.|.++ | +|-.+||+.+|++++.|.+
T Consensus 13 r~L~~l~~~-g~~~vSS~~La~~~gi~~~qVRK 44 (74)
T d2dt5a1 13 RILEELEAQ-GVHRTSSEQLGGLAQVTAFQVRK 44 (74)
T ss_dssp HHHHHHHHT-TCCEECHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHC-CCEEECHHHHHHHHCCCHHHHHH
T ss_conf 999999987-99159699999997969999998
No 169
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.16 E-value=11 Score=14.95 Aligned_cols=44 Identities=7% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99999999964999889999828998798899751578875577989999987321875210
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~ 71 (223)
...+..+.++ | |-+.-|+.+|++++++++. |.++-+.+|..+-.
T Consensus 11 L~~f~~v~~~-g-s~t~AA~~l~isq~avs~~----------------l~~lE~~~g~~Lf~ 54 (89)
T d2esna1 11 LLVFDALYRH-R-NVGTAASELAISASAFSHA----------------LGRLRQGLDDELFL 54 (89)
T ss_dssp HHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHH----------------HHHHHHHHTSCCEE
T ss_pred HHHHHHHHHH-C-CHHHHHHHHCCCCCHHHHH----------------HHHHHHCCCCEEEE
T ss_conf 9999999980-9-9999999877998475599----------------99998657730078
No 170
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.93 E-value=12 Score=14.93 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHC-----CCHHHHHHHHH
Q ss_conf 999999996499-9889999828-----99879889975
Q gi|254780444|r 11 EAIDRMAERHNL-TPSGLARKAG-----LDPTSFNKSKR 43 (223)
Q Consensus 11 ~~i~~l~~~~gl-s~~~lA~~~G-----v~~~ti~~~~~ 43 (223)
+.|..|.++..+ ||.+|++.+. ++++|+|+.-+
T Consensus 5 ~~I~~li~~~~i~tQ~eL~~~L~~~Gi~vTQaTlSRDL~ 43 (75)
T d1b4aa1 5 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIK 43 (75)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_conf 999999986897789999999998598630899997999
No 171
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=33.15 E-value=12 Score=14.74 Aligned_cols=36 Identities=0% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHCCC------CHHHHHHHHCCCHHHHHHH
Q ss_conf 89999999999996499------9889999828998798899
Q gi|254780444|r 6 HKKIWEAIDRMAERHNL------TPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gl------s~~~lA~~~Gv~~~ti~~~ 41 (223)
.++|.+.|...+....+ +..+||+..|+|.+++.+.
T Consensus 4 ~~qi~~~l~~~I~~g~~~~G~~l~~~~La~~~~vSr~tvr~A 45 (69)
T d2hs5a1 4 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREA 45 (69)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999829999929669999999989798999999
No 172
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=32.72 E-value=13 Score=14.70 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHC-----CCHHHHHHHHH
Q ss_conf 9999999996499-9889999828-----99879889975
Q gi|254780444|r 10 WEAIDRMAERHNL-TPSGLARKAG-----LDPTSFNKSKR 43 (223)
Q Consensus 10 ~~~i~~l~~~~gl-s~~~lA~~~G-----v~~~ti~~~~~ 43 (223)
.++|..|.++..+ ||.+|...+- ++++|+|+--+
T Consensus 6 q~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRDL~ 45 (63)
T d2p5ka1 6 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 45 (63)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_conf 9999999984897889999999998698752899887899
No 173
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=31.22 E-value=13 Score=14.54 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHCC
Q ss_conf 4999889999828998798899751578875577-9899999873218
Q gi|254780444|r 20 HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATN 66 (223)
Q Consensus 20 ~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p-~~~~l~kia~~~~ 66 (223)
...|..++|+..|+|...+.+.++..-. +.|.+ ..+.|..+++.++
T Consensus 37 ~~~tl~eI~~~lgiSrERVRQie~~al~-kLr~~~~~~~L~~~l~~~~ 83 (87)
T d1ttya_ 37 KPKTLEEVGQYFNVTRERIRQIEVKALR-KLRHPSRSKYLKSLLSLMD 83 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH-HHBTTBSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHC
T ss_conf 9688999999959889999999999999-9867377899999998631
No 174
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=31.20 E-value=13 Score=14.53 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=22.0
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 96499988999982899879889975
Q gi|254780444|r 18 ERHNLTPSGLARKAGLDPTSFNKSKR 43 (223)
Q Consensus 18 ~~~gls~~~lA~~~Gv~~~ti~~~~~ 43 (223)
....+|..++|+..|++...+.+.++
T Consensus 25 ~~~~~tl~eIa~~lgiS~erVrqi~~ 50 (61)
T d1ku3a_ 25 DGREHTLEEVGAYFGVTRERIRQIEN 50 (61)
T ss_dssp TSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99977899988997988999999999
No 175
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.96 E-value=14 Score=14.40 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=21.9
Q ss_pred HHHHHHHHHH------CCC-CHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999996------499-9889999828998798899
Q gi|254780444|r 10 WEAIDRMAER------HNL-TPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 10 ~~~i~~l~~~------~gl-s~~~lA~~~Gv~~~ti~~~ 41 (223)
-+.|...... .-| |..+||+..|+|.+|+.+.
T Consensus 9 ~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~A 47 (74)
T d1hw1a1 9 EEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREV 47 (74)
T ss_dssp HHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999998499999499834999999989798999999
No 176
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.49 E-value=14 Score=14.35 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 889999828998798899751
Q gi|254780444|r 24 PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 24 ~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
..+||+.+|++...|..|.+.
T Consensus 32 ~~~LA~~lgls~~qV~~WFqN 52 (59)
T d2cqxa1 32 LKGLSKQLDWSVRKIQCWFRH 52 (59)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999978199999999996
No 177
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=28.77 E-value=15 Score=14.27 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 7755899999999999964999---8899998289987988997515
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHNLT---PSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~gls---~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
+.+|.+++..==....+..-.| ..+||+.+|+++..|.-|....
T Consensus 2 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNr 48 (56)
T d9anta_ 2 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 48 (56)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCC
T ss_conf 96899999999999975799999999999999399866700214110
No 178
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=28.41 E-value=15 Score=14.23 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCHHHHHHHHC--CCHHHHHHHHHCCCC
Q ss_conf 99999964999889999828--998798899751578
Q gi|254780444|r 13 IDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIE 47 (223)
Q Consensus 13 i~~l~~~~gls~~~lA~~~G--v~~~ti~~~~~~~~~ 47 (223)
|++||+-.-++-.+-|.-.| ++..+.++|++|...
T Consensus 8 LQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~ 44 (120)
T d1s4ka_ 8 LQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIP 44 (120)
T ss_dssp HHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
T ss_conf 9999999997599999999657668999998748989
No 179
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.37 E-value=15 Score=14.23 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHHH
Q ss_conf 89999999999996499--9889999828998798899
Q gi|254780444|r 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 6 ~~~i~~~i~~l~~~~gl--s~~~lA~~~Gv~~~ti~~~ 41 (223)
..+|..+.+.|..+.|- |..++|..+|++..-+...
T Consensus 14 ~~ki~~~~~~l~q~lgRePT~~EiA~~l~~~~e~V~~~ 51 (57)
T d1l0oc_ 14 GNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLA 51 (57)
T ss_dssp HHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999987299989999999979399999999
No 180
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=27.89 E-value=15 Score=14.17 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999964999889999828998798899751578875577989999987321875210000
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~ 74 (223)
|++.++..+++.+.-|-+|..-. ++.+. |.+-.++. |..+.+.|.|+.+-+|+.+-+++.
T Consensus 3 ig~~lkqir~elnyhqidlysgi-msksi---yikveads--rpisveel~kfserlginffeil~ 62 (65)
T d2awia1 3 IGSVLKQIRQELNYHQIDLYSGI-MSKSV---YIKVEADS--RPISVEELSKFSERLGVNFFEILN 62 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT-SCHHH---HHHHHTTC--SCCBHHHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCCE---EEEEECCC--CCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 00699999998445675887512-20126---99984488--864499999899983763999987
No 181
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.01 E-value=16 Score=13.96 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 75589999999999996-4999---889999828998798899751
Q gi|254780444|r 3 SFSHKKIWEAIDRMAER-HNLT---PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~-~gls---~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
.+|.+++ +.|+++-.+ .-.| ..+||..+|++...|..|..+
T Consensus 33 ~ft~~Ql-~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqN 77 (88)
T d1b72a_ 33 NFTTRQL-TELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQN 77 (88)
T ss_dssp CCCHHHH-HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEEECCHH
T ss_conf 8899999-99999999678875278999999829997784243575
No 182
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=25.91 E-value=16 Score=13.94 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCHH----HHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999996499988----99998289987988997515788755779899999873
Q gi|254780444|r 9 IWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~----~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~ 63 (223)
+..++.+| .+.|+|.. ..|...|+++.|+.+|..... | .+..+-|..+++
T Consensus 38 ~l~~V~~L-~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~~V~-g---~~r~DWLpaLl~ 91 (99)
T d2ezla_ 38 AVQAADEM-LNQGISTKTAFATVAGHYQVSASTLRDKYYQVQ-K---FAKPDWAAALVD 91 (99)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHHHHSSSCHHHHHHHHHHHH-T---SCSTTHHHHTTS
T ss_pred HHHHHHHH-HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC-C---CCHHHHHHHHCC
T ss_conf 99999999-986970899999999995988999999999978-9---988888998756
No 183
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.84 E-value=17 Score=13.82 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 775589999999999996-4999---889999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAER-HNLT---PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~-~gls---~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.+|.+++ ..|+..-++ .-.| ..+||..+|+++..|.-|..+
T Consensus 6 t~ft~~Ql-~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqN 51 (67)
T d1zq3p1 6 TTFTSSQI-AELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 51 (67)
T ss_dssp CCCCHHHH-HHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 76999999-99999999877877899999998709981331056630
No 184
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=24.76 E-value=17 Score=13.81 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999964999889999828998798899
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..+.++.+. | |-+.-|+.+|++++++++-
T Consensus 7 ~~f~~v~e~-g-s~~~AA~~L~isq~avs~~ 35 (89)
T d1ixca1 7 KYFIAVAEA-G-NMAAAAKRLHVSQPPITRQ 35 (89)
T ss_dssp HHHHHHHHH-S-SHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHH-C-CHHHHHHHHCCCHHHHHHH
T ss_conf 999999980-9-9999999858992788999
No 185
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.28 E-value=11 Score=15.14 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 75589999999999996499988999982899
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLD 34 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~ 34 (223)
+|.++.||++|...=.-.=.|.+++|+++|..
T Consensus 2 ~F~~~~vw~~l~~IP~G~v~TYg~iA~~~g~p 33 (85)
T d1qnta1 2 SFTRQVLWKLLKVVKFGEVISYQQLAALAGNP 33 (85)
T ss_dssp CHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf 35899999999269999836399999773776
No 186
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.41 E-value=19 Score=13.52 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCC---HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 77558999999999999-64999---889999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAE-RHNLT---PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~-~~gls---~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.+|.+++. .|++.=+ ..-.| ..+||..+|+++..|.-|..+
T Consensus 6 t~ft~~Q~~-~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 51 (58)
T d2craa1 6 IPYSKGQLR-ELEREYAANKFITKDKRRKISAATSLSERQITIWFQN 51 (58)
T ss_dssp CCSCHHHHH-HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 789999999-9999996669999899999999829997781132401
No 187
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.00 E-value=18 Score=13.66 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 889999828998798899751
Q gi|254780444|r 24 PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 24 ~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
..+||+.+|++...|..|...
T Consensus 28 ~~~LA~~l~l~~~~V~~WFqN 48 (50)
T d1s7ea1 28 QITISQQLGLELSTVSNFFMN 48 (50)
T ss_dssp HHHHHTTSCSSSHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHCCCC
T ss_conf 999999979098892210780
No 188
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=21.91 E-value=19 Score=13.45 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999964999889999828998798899
Q gi|254780444|r 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKS 41 (223)
Q Consensus 11 ~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~ 41 (223)
..+.+.. +.| |-+..|+.+|++++++++.
T Consensus 24 ~~~~ai~-~~g-s~~~AA~~l~~sq~avs~~ 52 (127)
T d1b9ma1 24 SLLKHIA-LSG-SISQGAKDAGISYKSAWDA 52 (127)
T ss_dssp HHHHHHH-HHS-SHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-HHC-CHHHHHHHHCCCHHHHHHH
T ss_conf 9999999-959-9589998815876299999
No 189
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.75 E-value=20 Score=13.43 Aligned_cols=43 Identities=28% Similarity=0.287 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHHCC-CC---HHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 77558999999999999649-99---8899998289987988997515
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAERHN-LT---PSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~~g-ls---~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
+.+|.+++ ..|++.-++.- .+ ..+||..+|+++..|..|..+.
T Consensus 6 t~ft~~Ql-~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNr 52 (68)
T d2cuea1 6 TSFTQEQI-EALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 52 (68)
T ss_dssp CCSCHHHH-HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCH
T ss_conf 86899999-999999987689987899999999396933542327130
No 190
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.29 E-value=20 Score=13.37 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 775589999999999996-4999---889999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAER-HNLT---PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~-~gls---~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.+|.+++ +.|+++=++ .-.| ..+||..+|++...|.-|..+
T Consensus 5 t~ft~~Ql-~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqN 50 (58)
T d1ig7a_ 5 TPFTTAQL-LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp CCCCHHHH-HHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCC
T ss_conf 88999999-99999999878888999999999929994061000712
No 191
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.14 E-value=20 Score=13.35 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCC---HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 77558999999999999-64999---889999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAE-RHNLT---PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~-~~gls---~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.+|.+++. .|++.-+ ..-.| ..+||..+|++...|..|...
T Consensus 7 t~ft~~Ql~-~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqN 52 (68)
T d1ftta_ 7 VLFSQAQVY-ELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 52 (68)
T ss_dssp SSCCHHHHH-HHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 989999999-9999998877777899999999849992524252522
No 192
>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}
Probab=21.09 E-value=20 Score=13.35 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=25.5
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEE
Q ss_conf 89993689740588899997179689999999779879999
Q gi|254780444|r 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 (223)
Q Consensus 156 ~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~ 196 (223)
+++...+-++..||.| ...+.+++++|.++- +|.++|.
T Consensus 52 LvvFSs~ykPrr~D~V--v~~G~~~~VTr~~~~-ngk~~i~ 89 (93)
T d2pp6a1 52 VVVFSGNVIPRRGDRV--VLRGSEFTVTRIRRF-NGKPQLT 89 (93)
T ss_dssp EEECCSSCCCCTTCEE--EETTEEEEEEEEEEE-TTEEEEE
T ss_pred EEEECCCCCCCCCCEE--EECCCEEEEEEEEEE-CCCEEEE
T ss_conf 9997588435899867--864868999989987-8938999
No 193
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=21.07 E-value=20 Score=13.34 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHCC----CCHHHHHHHHCC
Q ss_conf 558999999999999649----998899998289
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHN----LTPSGLARKAGL 33 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~g----ls~~~lA~~~Gv 33 (223)
.+..+|-.+|-+|+.++| +.||+.||+++-
T Consensus 3 ~~d~~le~~Il~Ll~~R~~~~ticPsEvARal~~ 36 (85)
T d2ns0a1 3 VSDRELEECIRALLDARADSASICPSDVARAVAP 36 (85)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCCBCHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf 5589999999999986499897498999988684
No 194
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.94 E-value=20 Score=13.33 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHH-CCCCH---HHHHHHHCCCHHHHHHHHHC
Q ss_conf 775589999999999996-49998---89999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAER-HNLTP---SGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~~-~gls~---~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.+|.+++ +.|++.=.. .-.|. .+||+.+|+++..|..|..+
T Consensus 8 t~~t~~Q~-~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqN 53 (66)
T d1bw5a_ 8 TVLNEKQL-HTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 53 (66)
T ss_dssp CCCSHHHH-HHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 69699999-99999999878999999999999909397882253076
No 195
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.92 E-value=20 Score=13.32 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCC---HHHHHHHHCCCHHHHHHHHHC
Q ss_conf 77558999999999999-64999---889999828998798899751
Q gi|254780444|r 2 TSFSHKKIWEAIDRMAE-RHNLT---PSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 2 ~~~~~~~i~~~i~~l~~-~~gls---~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
+.+|.+++. .|+..=+ ..-.+ ..+||..+|++...|.-|..+
T Consensus 4 t~fT~~Ql~-~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqN 49 (57)
T d1jgga_ 4 TAFTRDQLG-RLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQN 49 (57)
T ss_dssp CCCCHHHHH-HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHH
T ss_conf 789999999-9999998779999999999999959986680100413
No 196
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.63 E-value=21 Score=13.28 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCCCEEEEECCCCC---CCCCEEEEEEECCCEEEEEEEEECCC
Q ss_conf 487868999368974---05888999971796899999997798
Q gi|254780444|r 151 YRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGR 191 (223)
Q Consensus 151 i~~Gd~vlVd~~~~~---~~g~~v~~~~~~~~~~iKrl~~~~~~ 191 (223)
|..|+.+++||+..- ..+...++...++++ --++..+++
T Consensus 15 ~~~g~~~lvDPt~~EE~~~~~~ltv~~n~~gei--~~l~k~Gg~ 56 (118)
T d2nn6a2 15 FQQGTYLLVDPNEREERVMDGLLVIAMNKHREI--CTIQSSGGI 56 (118)
T ss_dssp CTTTSSEEESCCHHHHHHCSCEEEEEEETTTEE--EEEEEESCC
T ss_pred EECCCEEEECCCHHHHHCCCCCEEEEEECCCCE--EEEEECCCC
T ss_conf 935996997889899807787289999089729--999964994
No 197
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=20.34 E-value=21 Score=13.24 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9998899998289987988997515788755779899999
Q gi|254780444|r 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 (223)
Q Consensus 21 gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~k 60 (223)
-+|+++++++-|+++.-+..|.+.....-......-.|.+
T Consensus 50 l~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~aLr~t~~q~ 89 (93)
T d2oa4a1 50 LITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKK 89 (93)
T ss_dssp TCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5779999988399999999999999998699999998999
Done!