BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780444|ref|YP_003064857.1| bacteriophage repressor
protein C1 [Candidatus Liberibacter asiaticus str. psy62]
(223 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040121|gb|ACT56917.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 223
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK
Sbjct: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV
Sbjct: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI
Sbjct: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ
Sbjct: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
>gi|315122107|ref|YP_004062596.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495509|gb|ADR52108.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 216
Score = 357 bits (916), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 182/223 (81%), Positives = 195/223 (87%), Gaps = 7/223 (3%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MT FSH+KIWEAID+MA+RHNLTPSGLARKAGLDPTSFNKSKRFG+EGRNRWPSTESI K
Sbjct: 1 MTKFSHEKIWEAIDQMAKRHNLTPSGLARKAGLDPTSFNKSKRFGVEGRNRWPSTESISK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
IL ATNETICQ + F + + EKKEKEIPLL FPPS S GFFDSG FP GNKWNTVGV
Sbjct: 61 ILEATNETICQFFGILFLEEKNIEKKEKEIPLLDFPPSESSGFFDSGGFPAGNKWNTVGV 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
PEIRSPHNGIYAIQ QDTSMLPLYRKGDILILN+AIQVNCGDR+LIKP GDI
Sbjct: 121 PEIRSPHNGIYAIQ-------IQDTSMLPLYRKGDILILNAAIQVNCGDRVLIKPHEGDI 173
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AKVLIS+RGRSIDLMSLNCCYPVDT++ SDIEWIA+ILWASQ
Sbjct: 174 EAKVLISQRGRSIDLMSLNCCYPVDTIDASDIEWIAKILWASQ 216
>gi|239834343|ref|ZP_04682671.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
gi|239822406|gb|EEQ93975.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
Length = 227
Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 144/228 (63%), Gaps = 14/228 (6%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MT FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K
Sbjct: 9 MTMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAK 68
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKE-----KEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
++ AT T + L + RT + E + IPLL +G+GG+FD FP G W
Sbjct: 69 VMEATGSTFDEFTRLIGGETRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGW 128
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P S G+YA++ SMLPLYR GD LI+ + GDR++++
Sbjct: 129 DIVEFPA--STGEGVYALE-------VSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRT 179
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ G+++AK+L + R+I+L SLN +P E DIEW+ARILWASQ
Sbjct: 180 KDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESRDIEWVARILWASQ 227
>gi|92116178|ref|YP_575907.1| putative phage repressor [Nitrobacter hamburgensis X14]
gi|91799072|gb|ABE61447.1| putative phage repressor [Nitrobacter hamburgensis X14]
Length = 210
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLARKAGLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MAMLTHAQIWTALDRLAERSGLSPSGLARKAGLDPTTFNKSKRITGDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAAT+ I + R T+ +PLL F +G+GG+FD G FP G W+ VG+
Sbjct: 61 ALAATDTAIDTFVQFIEDTARATQA----VPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GD+++++ + GDR+++K R G++
Sbjct: 117 PSVHDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGTSIRRGDRVVVKTRDGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + I+L SLN + T+ SD+EWIARI+WASQ
Sbjct: 168 MVKELKRRTAKMIELQSLNPNHVNRTLAASDVEWIARIVWASQ 210
>gi|75674664|ref|YP_317085.1| peptidase S24 [Nitrobacter winogradskyi Nb-255]
gi|74419534|gb|ABA03733.1| peptidase S24 [Nitrobacter winogradskyi Nb-255]
Length = 210
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 143/226 (63%), Gaps = 19/226 (8%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLAR+AGLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60
Query: 61 ILAATN---ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
LAAT +T Q ++ TE+ K +PLL F +G+GG+FD G FP G W+
Sbjct: 61 ALAATGTAIDTFVQFIE-------DTERAAKAVPLLGFAEAGAGGYFDDGGFPVGKGWDE 113
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
VG+P + H YA++ SM P YR GD+++++ + GDR+++K R
Sbjct: 114 VGLPCVNDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRD 164
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++ K L R R+I+L SLN + T+ S++EWIARI+WASQ
Sbjct: 165 GEVMVKELKRRTARTIELQSLNPSHANRTLPASEVEWIARIVWASQ 210
>gi|15887830|ref|NP_353511.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str.
C58]
gi|15155410|gb|AAK86296.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str.
C58]
Length = 216
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 147/222 (66%), Gaps = 9/222 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+ IW AID +AERH LTPS LA++AGLDPTSFNKSKRFG +GR RWPSTES+ K+L
Sbjct: 2 LSHETIWSAIDTLAERHQLTPSALAKRAGLDPTSFNKSKRFGPDGRKRWPSTESVSKVLE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
AT ++ Q F +T + + IPLL F +GSGGFFD G FP G W+ V P
Sbjct: 62 ATGASVDQFFGYAFGRAQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEFP 121
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
G+YA++ Q SM+PLYR GDILI+ V GDR+++K R G+++
Sbjct: 122 SSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAPVRRGDRVVLKSRDGEVM 174
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AKVL + ++I+L+SLN +P + +M+D+EWIARI+WASQ
Sbjct: 175 AKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216
>gi|85713691|ref|ZP_01044681.1| peptidase S24 [Nitrobacter sp. Nb-311A]
gi|85699595|gb|EAQ37462.1| peptidase S24 [Nitrobacter sp. Nb-311A]
Length = 210
Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 139/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLAR+AGLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAAT+ I + R + +PLL F +G+GG+FD G FP G W+ VG+
Sbjct: 61 ALAATDTAIDTFVQFIEDSARAAQA----VPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GD+++++ + GDR+++K R G++
Sbjct: 117 PAVNDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R ++I+L SLN + T+ SD+EWIARI+WASQ
Sbjct: 168 MVKELKRRTAKTIELQSLNPSHANRTLPASDVEWIARIVWASQ 210
>gi|222084796|ref|YP_002543325.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
gi|221722244|gb|ACM25400.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
Length = 221
Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 150/227 (66%), Gaps = 14/227 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AID++AER+ LTPSGLAR+AGLDPTSFNKSKR G +GR RWPSTESI K+L
Sbjct: 2 LSHEQIWSAIDKLAERYALTPSGLARRAGLDPTSFNKSKRLGQDGRLRWPSTESIAKVLG 61
Query: 64 ATNETICQLLDL--PFSDG-----RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT ++ Q L + P G + IPLL F +GSGGFFD G FP G W+
Sbjct: 62 ATGASMEQFLGILRPVERGDGNADHASSPPASSIPLLGFAQAGSGGFFDDGGFPAGQGWD 121
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ Q SMLPLYR GD+LI+ Q+ DR+++K R
Sbjct: 122 MVEFPAAPGQKGGVYALE-------VQGESMLPLYRDGDVLIVEPGAQIRRSDRVVVKTR 174
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AKVL+ + +SI+L+SLN +P + +++D+EWIARI+WASQ
Sbjct: 175 EGEVMAKVLLRQSAKSIELLSLNPEHPNRSFDLADVEWIARIIWASQ 221
>gi|15964281|ref|NP_384634.1| putative transcription regulator protein [Sinorhizobium meliloti
1021]
gi|307307018|ref|ZP_07586757.1| putative phage repressor [Sinorhizobium meliloti BL225C]
gi|307320672|ref|ZP_07600085.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|15073458|emb|CAC45100.1| Transcriptional regulator [Sinorhizobium meliloti 1021]
gi|306893707|gb|EFN24480.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|306901958|gb|EFN32557.1| putative phage repressor [Sinorhizobium meliloti BL225C]
Length = 218
Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 149/224 (66%), Gaps = 11/224 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI KIL
Sbjct: 2 LSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRQSTDGRDRWPSTESIAKILH 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
AT ++ Q L L + +E+++ IPL+ F +G+GGFFD G FP G W+T+
Sbjct: 62 ATGASVDQFLALMEPNAAGSEREDASAAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDTIE 121
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P G YA++ Q SMLPLYR GD+LI++ + QV DR+++K R G+
Sbjct: 122 FPTPERRQGGTYALE-------VQGDSMLPLYRDGDVLIVDPSAQVRRNDRVVVKTRGGE 174
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AKVL + R I+L+SLN +P EM+D+EWIARI+WASQ
Sbjct: 175 VMAKVLARQTPRGIELVSLNPDHPNRNFEMNDVEWIARIIWASQ 218
>gi|325291874|ref|YP_004277738.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3]
gi|325059727|gb|ADY63418.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3]
Length = 216
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/222 (49%), Positives = 147/222 (66%), Gaps = 9/222 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+ IW AID +A+RH LTPS LA++AGLD TSFNKSKRFG +GR RWPSTES+ K+L
Sbjct: 2 LSHETIWSAIDTLAKRHQLTPSALAKRAGLDSTSFNKSKRFGPDGRKRWPSTESVSKVLE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
AT ++ Q F +T + + IPLL F +GSGGFFD G FP G W+ V P
Sbjct: 62 ATGASVDQFFGYAFGRTQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEFP 121
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
G+YA++ Q SM+PLYR GDILI+ QV GDR+++K R G+++
Sbjct: 122 SSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAQVRRGDRVVLKSRDGEVM 174
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AKVL + ++I+L+SLN +P + +M+D+EWIARI+WASQ
Sbjct: 175 AKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216
>gi|153011349|ref|YP_001372563.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
gi|151563237|gb|ABS16734.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
Length = 217
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 140/225 (62%), Gaps = 14/225 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAKVME 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKE-----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
AT T + L RT + E + IPLL +G+GG+FD FP G W+ V
Sbjct: 62 ATGSTFDEFTRLIRGGNRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGWDIV 121
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
P G+YA++ SMLPLYR GD LI+ + GDR++++ + G
Sbjct: 122 EFPA--GSGEGVYALE-------VSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRTKDG 172
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AK+L + R+I+L SLN +P E DIEW+ARILWASQ
Sbjct: 173 EVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWVARILWASQ 217
>gi|115522745|ref|YP_779656.1| putative phage repressor [Rhodopseudomonas palustris BisA53]
gi|115516692|gb|ABJ04676.1| putative phage repressor [Rhodopseudomonas palustris BisA53]
Length = 208
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 140/220 (63%), Gaps = 13/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K LA
Sbjct: 2 LTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKALA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
ATN I + L R + +PLL F +G+GG+FD G FP G W+ VG+P++
Sbjct: 62 ATNTAIDSFVRLIGDRARPVQ----SVPLLGFAQAGAGGYFDDGGFPVGKGWDEVGLPQV 117
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H YA++ SM P YR GD+++++ V GDR+++K G+++ K
Sbjct: 118 NDEH--AYALE-------ISGDSMKPAYRAGDVIVVSPGTPVRRGDRVVVKTNNGEVMVK 168
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R ++++L SLN +P T+ +D+EWIARI+WASQ
Sbjct: 169 ELKRRTSKTLELASLNPSHPDRTLAPADVEWIARIVWASQ 208
>gi|90422277|ref|YP_530647.1| putative phage repressor [Rhodopseudomonas palustris BisB18]
gi|90104291|gb|ABD86328.1| putative phage repressor [Rhodopseudomonas palustris BisB18]
Length = 208
Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 142/220 (64%), Gaps = 13/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+DR+AER L+PSGLA+++GLDPT+FNKSKR +GR RWPSTES+ K LA
Sbjct: 2 LTHDQIWTALDRLAERAGLSPSGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAKALA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
ATN I + L DG + + +PLL +GSGG+FD G FP G W+ VG+P +
Sbjct: 62 ATNTAIDAFVQL-IGDG---PRAVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPSV 117
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H YA++ SM P YR GD+++++ + GDR+++K R G+++ K
Sbjct: 118 NDEH--AYALE-------ISGDSMKPAYRAGDVIVVSPGSPIRRGDRVVVKTRDGEVMVK 168
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R ++++L+SLN +P T+ +++EWIARI+WASQ
Sbjct: 169 ELKRRTAKTLELLSLNPSHPDRTLAPAEVEWIARIVWASQ 208
>gi|190890233|ref|YP_001976775.1| phage-related transcriptional regulator protein [Rhizobium etli
CIAT 652]
gi|190695512|gb|ACE89597.1| putative phage-related transcriptional regulator protein [Rhizobium
etli CIAT 652]
Length = 228
Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/234 (51%), Positives = 158/234 (67%), Gaps = 21/234 (8%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDLPFSDG----RTTEKKEK----------EIPLLYFPPSGSGGFFDSGVF 109
AT ++ Q L L G RT E+ ++ IPLL F +G+GGFFD G F
Sbjct: 62 ATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPQGGAIPLLGFAQAGAGGFFDDGGF 121
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV D
Sbjct: 122 PAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRND 174
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 175 RVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228
>gi|218516275|ref|ZP_03513115.1| putative phage-related transcriptional regulator protein [Rhizobium
etli 8C-3]
Length = 228
Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/234 (51%), Positives = 158/234 (67%), Gaps = 21/234 (8%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDLPFSDG----RTTEKKEK----------EIPLLYFPPSGSGGFFDSGVF 109
AT ++ Q L L G RT E+ ++ IPLL F +G+GGFFD G F
Sbjct: 62 ATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPEGGAIPLLGFAQAGAGGFFDDGGF 121
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV D
Sbjct: 122 PAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRND 174
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 175 RVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228
>gi|327190883|gb|EGE57941.1| putative phage-related transcriptional regulator protein [Rhizobium
etli CNPAF512]
Length = 228
Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/234 (51%), Positives = 158/234 (67%), Gaps = 21/234 (8%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDLPFSDG----RTTEKKEK----------EIPLLYFPPSGSGGFFDSGVF 109
AT ++ Q L L G RT E+ ++ IPLL F +G+GGFFD G F
Sbjct: 62 ATGASMEQFLALLPPGGTAAERTGERAQQPDSRFQPQGGAIPLLGFAQAGAGGFFDDGGF 121
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV D
Sbjct: 122 PAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRND 174
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 175 RVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228
>gi|316932334|ref|YP_004107316.1| putative phage repressor [Rhodopseudomonas palustris DX-1]
gi|315600048|gb|ADU42583.1| putative phage repressor [Rhodopseudomonas palustris DX-1]
Length = 210
Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L ATN I + L R + +PLL +GSGG+FD G FP G W +G+
Sbjct: 61 ALQATNTAIDTFVQLIHDRPRVVQ----SVPLLGLAQAGSGGYFDDGGFPVGKGWEEIGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P I H YA+Q SM P YR GDI++++ + V+ GDR+++K G++
Sbjct: 117 PSISDEH--AYALQ-------ISGDSMKPAYRHGDIVVVSPSAAVHRGDRVVVKTTKGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + I+L SLN +P T+ S++EWI RI+WASQ
Sbjct: 168 MVKELKRRTAKVIELASLNPSHPDRTLAPSEVEWIGRIVWASQ 210
>gi|39933872|ref|NP_946148.1| S24 family peptidase [Rhodopseudomonas palustris CGA009]
gi|192289291|ref|YP_001989896.1| phage repressor [Rhodopseudomonas palustris TIE-1]
gi|39647719|emb|CAE26239.1| Peptidase family S24 [Rhodopseudomonas palustris CGA009]
gi|192283040|gb|ACE99420.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
Length = 210
Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 138/223 (61%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L ATN I + L R + +PLL +GSGG+FD G FP G W+ VG+
Sbjct: 61 ALQATNTAIDTFVQLIHDRPRVVQ----SVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P I H YA++ SM P YR GDI++++ + V+ GDR+++K G++
Sbjct: 117 PSITDEH--AYALE-------ISGDSMKPAYRSGDIVVVSPSATVHRGDRVVVKTTKGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + ++L SLN +P T+ S+IEWI RI+WASQ
Sbjct: 168 MVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ 210
>gi|116250339|ref|YP_766177.1| phage-related transcriptional regulator [Rhizobium leguminosarum
bv. viciae 3841]
gi|115254987|emb|CAK06061.1| putative phage-related transcriptional regulator [Rhizobium
leguminosarum bv. viciae 3841]
Length = 225
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/231 (49%), Positives = 154/231 (66%), Gaps = 18/231 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE-----------IPLLYFPPSGSGGFFDSGVFPTG 112
AT ++ Q L D +E++ ++ IPLL F +G+GGFFD G FP G
Sbjct: 62 ATGASMEQFLAFMRPDAGPSEQQARQQENAFQPQGGSIPLLGFAQAGAGGFFDDGGFPAG 121
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR++
Sbjct: 122 QGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVV 174
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++ G+++AKVL+ + RSI+L+SLN +P T+E+SD++WIARI+WASQ
Sbjct: 175 VRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225
>gi|13474687|ref|NP_106256.1| repressor protein CI [Mesorhizobium loti MAFF303099]
gi|14025442|dbj|BAB52042.1| repressor protein CI [Mesorhizobium loti MAFF303099]
Length = 212
Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 139/220 (63%), Gaps = 9/220 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR +GR RWPSTES+ KI+
Sbjct: 2 LSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKIIE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + L T + +PLL F +G+GGFFD FP G W+ V +P
Sbjct: 62 ATGASLDEFTGLIEGRMSTAPAHRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLVELPAQ 121
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ + YA+Q Q SMLPLYR GD+LI+ GDR+++K +G+++AK
Sbjct: 122 STESS--YALQ-------VQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSGEVMAK 172
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VL + +SI L+SLN +P + M ++EW+ARI+WASQ
Sbjct: 173 VLDRQTVKSIALVSLNPDHPDRDIPMREVEWVARIVWASQ 212
>gi|218671565|ref|ZP_03521235.1| putative phage-related transcriptional regulator protein [Rhizobium
etli GR56]
Length = 223
Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 155/229 (67%), Gaps = 16/229 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDL--PFSDGRTTEKKEK-------EIPLLYFPPSGSGGFFDSGVFPTGNK 114
AT ++ Q L P ++ E+ IPLL F +G+GGFFD G FP G
Sbjct: 62 ATGASMEQFLAFMRPGANSSAELPGERAKPPHGGAIPLLGFAQAGAGGFFDDGGFPAGQG 121
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR++++
Sbjct: 122 WDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVVR 174
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 175 TREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 223
>gi|299134039|ref|ZP_07027232.1| putative phage repressor [Afipia sp. 1NLS2]
gi|298590786|gb|EFI50988.1| putative phage repressor [Afipia sp. 1NLS2]
Length = 207
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 139/220 (63%), Gaps = 14/220 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+DR+A R L+PSGLA++AGLDPT+FNKSKR +GR RWPSTES+ K LA
Sbjct: 2 LTHDQIWTALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTSDGRERWPSTESVAKALA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + S R+ ++PLL F +GSGG+FD G FP G W+ VG+P +
Sbjct: 62 ATGISVDTFVHFIESSSRSV-----QVPLLGFAEAGSGGYFDDGGFPVGKGWDEVGLPSV 116
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H YA++ SM P YR GD+++++ + + GDR+++K + G+++ K
Sbjct: 117 NDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPSAPIRRGDRVVVKTKDGEVMVK 167
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R + I+L SLN + T+ S+IEWIARILWASQ
Sbjct: 168 ELRRRTQKVIELQSLNPAHSDRTLPTSEIEWIARILWASQ 207
>gi|260461922|ref|ZP_05810167.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
gi|259032169|gb|EEW33435.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
Length = 216
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 142/226 (62%), Gaps = 17/226 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR +GR RWPSTES+ KI+
Sbjct: 2 LSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKIIE 61
Query: 64 ATNETICQLLDLPFSDGRTT------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT ++ + L +GR + + + +PLL F +G+GGFFD FP G W+
Sbjct: 62 ATGASLDEFTGLI--EGRAGLVHDARDGRRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDL 119
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
V +P + + YA+Q Q SMLPLYR GD+LI+ GDR+++K
Sbjct: 120 VELPAQSTESS--YALQ-------VQGDSMLPLYRNGDVLIVEPGAATRKGDRVVVKTTA 170
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AKVL + +SI L+SLN +P + M ++EW+ARI+WASQ
Sbjct: 171 GEVMAKVLERQTVKSISLVSLNPDHPDRDISMREVEWVARIVWASQ 216
>gi|86356189|ref|YP_468081.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
gi|86280291|gb|ABC89354.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
Length = 223
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 154/229 (67%), Gaps = 16/229 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SHK+IWEAIDR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHKQIWEAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDL--PFSDGRTTEKKEK-------EIPLLYFPPSGSGGFFDSGVFPTGNK 114
AT ++ Q L P S E+ IPLL F +G+GGFFD G FP G+
Sbjct: 62 ATGASMEQFLAFMQPASSSSGERIGERAGPSPGGAIPLLGFAQAGAGGFFDDGGFPAGHG 121
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR++++
Sbjct: 122 WDVVEFPPKPSQRSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVVR 174
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
TG+++AKVL+ + RSI+LMSLN +P T++++D++WIARI+WASQ
Sbjct: 175 TCTGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLADVDWIARIIWASQ 223
>gi|319785581|ref|YP_004145057.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317171469|gb|ADV15007.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 216
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 142/226 (62%), Gaps = 17/226 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH ++W AID +AER++L+ SGLA++AGLD T+FNKSKR +GR RWPSTES+ KI+
Sbjct: 2 LSHDRVWAAIDALAERYSLSASGLAKRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKIME 61
Query: 64 ATNETICQLLDLPFSDGR------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT ++ + L +GR + + +PLL F +G+GGFFD FP G W+
Sbjct: 62 ATGASLDEFTGL--IEGRAGASHAASVARRSSVPLLGFAQAGAGGFFDDAGFPAGQGWDL 119
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ +P + + YA+Q Q SMLPLYR GD+LI+ GDR+++K +
Sbjct: 120 IELPTQSTESS--YALQ-------VQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTS 170
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AKVL + RSI L+SLN +P + M D+EW+ARI+WASQ
Sbjct: 171 GEVMAKVLERQTVRSIALVSLNPDHPDRDIPMRDVEWVARIVWASQ 216
>gi|227820746|ref|YP_002824716.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234]
gi|227339745|gb|ACP23963.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234]
Length = 217
Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI K+L
Sbjct: 2 LSHDSIWRAIDALAERHQLSPSGLARRAGLDPTSFNKSKRQSPDGRDRWPSTESISKVLE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKK---EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
AT TI Q + L S + + IPL+ F +G+GGFFD G FP G W+ V
Sbjct: 62 ATGATIDQFMALLQSGSGPSSRTGLPAAGIPLIGFAQAGAGGFFDDGGFPVGQGWDEVDF 121
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P +YA++ Q SMLPLYR GD+LI++ V GDR+++K G++
Sbjct: 122 PVAAQSKASVYALE-------VQGDSMLPLYRDGDVLIVDPGASVRRGDRVVLKSCEGEV 174
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AK+L + R ++L+SLN +P + EM D+EWIARI+WASQ
Sbjct: 175 MAKILARQTSRGVELLSLNPDHPNRSFEMKDVEWIARIVWASQ 217
>gi|241202972|ref|YP_002974068.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856862|gb|ACS54529.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 225
Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 151/231 (65%), Gaps = 18/231 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE-----------IPLLYFPPSGSGGFFDSGVFPTG 112
AT ++ Q + D +++ + IPLL F +G+GGFFD G FP G
Sbjct: 62 ATGASMEQFMAFMRPDAGLSKQPAGQQENAFPPQGGSIPLLGFAQAGAGGFFDDGGFPAG 121
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
W+ V P S G+YA++ Q SM+PLYR GD+LI+ QV DR++
Sbjct: 122 QGWDVVEFPAAPSQKAGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVV 174
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++ G+++AKVL+ + RSI+L+SLN +P T+E+SD++WIARI+WASQ
Sbjct: 175 VRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225
>gi|222147460|ref|YP_002548417.1| bacteriophage repressor protein [Agrobacterium vitis S4]
gi|221734450|gb|ACM35413.1| bacteriophage repressor protein [Agrobacterium vitis S4]
Length = 224
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 146/232 (62%), Gaps = 21/232 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+ IW AIDR+AE+++LTPSGLARKAGLDPTSFNKSKR G +GR RWPSTESI K+L
Sbjct: 2 LSHETIWNAIDRLAEQYHLTPSGLARKAGLDPTSFNKSKRVGPDGRMRWPSTESIAKVLE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP------------SGSGGFFDSGVFPT 111
AT I Q + L +D + +P FPP +GSGGFFD G FP
Sbjct: 62 ATGARIDQFVTLISNDNHQVNAVHETLPDGNFPPQIGTIPLLGLAQAGSGGFFDDGGFPA 121
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G W+ V +P P G+YA++ Q SM PLYR GDILI+ V GDR+
Sbjct: 122 GQGWDLVDLPTSAKP--GVYALE-------IQGDSMKPLYRDGDILIVEPGAPVRRGDRV 172
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++K G+++AKVL + R++DL+S+N +P ++M D+EWIARI+W SQ
Sbjct: 173 VVKTCDGEVMAKVLGRQTARTVDLISINPDHPNRVLDMQDVEWIARIIWVSQ 224
>gi|158422012|ref|YP_001523304.1| S24 family peptidase [Azorhizobium caulinodans ORS 571]
gi|158328901|dbj|BAF86386.1| peptidase family S24 protein [Azorhizobium caulinodans ORS 571]
Length = 222
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 144/230 (62%), Gaps = 19/230 (8%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW AIDR+AE + L+ SGLA++AGLD T+FN+SKR +GR RWPSTES+ KIL+
Sbjct: 2 LTHGQIWTAIDRLAEANGLSASGLAKRAGLDSTAFNRSKRITSDGRPRWPSTESVSKILS 61
Query: 64 ATNETICQLLDLPFSD-----GRTTE-----KKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
ATN ++ L L + G + E + ++ IP + +G GGFFD FP G+
Sbjct: 62 ATNTSMRAFLALLEGEDIGPSGFSEEPAPPFRPQRAIPHIGLAQAGDGGFFDDAGFPVGS 121
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
W+ + PE+ H YA++ SMLPLYR GD+++++ A V GDR+++
Sbjct: 122 GWDEILFPEVEDEH--AYALE-------ISGDSMLPLYRPGDLVVVSPAASVRKGDRVVV 172
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K R G+++AK L+ R R+++L SLN Y T+ +D+ WIARI+WASQ
Sbjct: 173 KTRDGEVLAKELVRRTARTVELRSLNPEYEGRTLAATDVLWIARIIWASQ 222
>gi|298290079|ref|YP_003692018.1| phage repressor [Starkeya novella DSM 506]
gi|296926590|gb|ADH87399.1| putative phage repressor [Starkeya novella DSM 506]
Length = 206
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 135/220 (61%), Gaps = 15/220 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW AID++AERH L+ S LA++AGLDPT+FN+SKR +GR RWPSTESI KILA
Sbjct: 2 LTHAQIWRAIDQLAERHGLSASALAKRAGLDPTTFNRSKREQPDGRARWPSTESIAKILA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + L R + IPL+ F +G GG+FD FP G W+ + P +
Sbjct: 62 ATGASLDDFMALIGGGTR------RAIPLIGFAQAGRGGYFDDAGFPVGGAWDEIEFPNV 115
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H YA++ SMLPLYR GD+++++ A GDR+++K R G+++AK
Sbjct: 116 GDEH--AYALE-------IAGDSMLPLYRDGDVVVVSPAAATRRGDRVIVKTREGEVMAK 166
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R ++++L SLN + + +I WIAR+LWASQ
Sbjct: 167 ELKRRTAKTVELRSLNPEHADRVFQEGEIAWIARVLWASQ 206
>gi|209547798|ref|YP_002279715.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533554|gb|ACI53489.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 225
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 150/231 (64%), Gaps = 18/231 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH +IW AIDR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 2 LSHDQIWGAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVLD 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE-----------IPLLYFPPSGSGGFFDSGVFPTG 112
AT ++ Q L D +++ + IPLL F +G+GGFFD G FP G
Sbjct: 62 ATGASVEQFLAFLQPDAGFSKRPAGQSDGAFPPQGSSIPLLGFAQAGAGGFFDDGGFPAG 121
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
W+ V P + + +YA++ Q SM+PLYR GD+LI+ QV DR++
Sbjct: 122 QGWDVVEFPAAPAQKSAVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVV 174
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++ G+++AKVL+ + RSI+LMSLN +P T+E+SD++WIARI+WASQ
Sbjct: 175 VRTCEGEVMAKVLLRQSPRSIELMSLNPEHPNRTLELSDVDWIARIIWASQ 225
>gi|323135593|ref|ZP_08070676.1| putative phage repressor [Methylocystis sp. ATCC 49242]
gi|322398684|gb|EFY01203.1| putative phage repressor [Methylocystis sp. ATCC 49242]
Length = 213
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 134/220 (60%), Gaps = 11/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR GR RWPSTESI K+L
Sbjct: 5 LSHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRETASGRQRWPSTESIAKVLQ 64
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + + L ++ K + PL+ +G+GGFFD F G W+ + V
Sbjct: 65 ATGASLDEFMALVSANSSACRKHTR--PLIGLAQAGAGGFFDDAGFAIGAGWDEIDVLAD 122
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H+ YA++ SM PLYR GD++I++ A V GDR+++K G+I+AK
Sbjct: 123 ADEHS--YALE-------ISGDSMFPLYRDGDVVIVSPAAPVRRGDRVVVKTTDGEIMAK 173
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L + R+++L S+N YP + ++ WIARILWASQ
Sbjct: 174 ELKRQTARTVELRSINPAYPDRVIPREEVSWIARILWASQ 213
>gi|150395367|ref|YP_001325834.1| putative phage repressor [Sinorhizobium medicae WSM419]
gi|150026882|gb|ABR58999.1| putative phage repressor [Sinorhizobium medicae WSM419]
Length = 215
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 147/221 (66%), Gaps = 8/221 (3%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI KIL
Sbjct: 2 LSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRRSADGRDRWPSTESISKILQ 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT T+ Q + L + +EK+ IPL+ F +G+GGFFD G FP G W+++ P
Sbjct: 62 ATGATVDQFMALMQPNAAGSEKESAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDSIEFPT 121
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
G YA++ Q SMLPLYR GDILI++ + QV DR++++ R G+++A
Sbjct: 122 AERRQTGAYALE-------VQGDSMLPLYRDGDILIVDPSAQVRRNDRVVVRTREGEVMA 174
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
KVL + R I+L+SLN +P EM ++EWIARI+WASQ
Sbjct: 175 KVLARQTPRGIELVSLNPDHPNRNFEMKEVEWIARIIWASQ 215
>gi|254712567|ref|ZP_05174378.1| Peptidase family S24 [Brucella ceti M644/93/1]
gi|254715639|ref|ZP_05177450.1| Peptidase family S24 [Brucella ceti M13/05/1]
gi|261217388|ref|ZP_05931669.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320261|ref|ZP_05959458.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922477|gb|EEX89045.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292951|gb|EEX96447.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 218
Score = 184 bits (467), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 141/227 (62%), Gaps = 17/227 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVME 61
Query: 64 ATNET-------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T I + LP G T+ IPLL +G+GG+FD FPTG W+
Sbjct: 62 ATGATFDEFTRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPTGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|265999054|ref|ZP_05464836.2| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
gi|263092030|gb|EEZ16327.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
Length = 223
Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64
Query: 62 LAATNETICQLL-------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ AT T + + LP G T+ IPLL +G+GG+FD FP G
Sbjct: 65 MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQG 123
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 124 WDIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVR 174
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 175 TRDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223
>gi|260564858|ref|ZP_05835343.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M]
gi|260152501|gb|EEW87594.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M]
Length = 223
Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64
Query: 62 LAATNETICQLL-------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ AT T + + LP G T+ IPLL +G+GG+FD FP G
Sbjct: 65 MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAKAGAGGYFDDAGFPAGQG 123
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 124 WDIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVR 174
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 175 TRDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223
>gi|288957020|ref|YP_003447361.1| hypothetical protein AZL_001790 [Azospirillum sp. B510]
gi|288909328|dbj|BAI70817.1| hypothetical protein AZL_001790 [Azospirillum sp. B510]
Length = 210
Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 140/220 (63%), Gaps = 11/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H IW AIDR+A +H L+ SGLAR+AGLDPT+FNKSKR +G+ RWPSTESI K+L
Sbjct: 2 LKHTDIWRAIDRLAAQHGLSASGLARRAGLDPTTFNKSKRTTNDGKLRWPSTESISKVLD 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + + L DG T ++ +P++ + +GS G+FD FP G+ W+ + P +
Sbjct: 62 ATGASLSEFVSL-VGDGAGTGPLQR-VPVIGYAQAGSAGYFDDAGFPAGSGWDELLFPSL 119
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
PH YA++ SM P+YR GD +I++ A Q+ DR++++ + G+++AK
Sbjct: 120 GDPH--AYALE-------ISGDSMEPVYRDGDTIIVSPAAQIRRNDRVVVRTKGGEVMAK 170
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
LI I+L+S+N +P ++ ++D+ W+ARI+WASQ
Sbjct: 171 QLIRETATKIELLSINRAHPDRSIPLADVAWMARIIWASQ 210
>gi|225629264|ref|ZP_03787297.1| Repressor protein C [Brucella ceti str. Cudo]
gi|237816924|ref|ZP_04595916.1| Repressor protein C [Brucella abortus str. 2308 A]
gi|225615760|gb|EEH12809.1| Repressor protein C [Brucella ceti str. Cudo]
gi|237787737|gb|EEP61953.1| Repressor protein C [Brucella abortus str. 2308 A]
Length = 234
Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 16 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 75
Query: 62 LAATNET-------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ AT T I + LP G T+ IPLL +G+GG+FD FP G
Sbjct: 76 MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQG 134
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 135 WDIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVR 185
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 186 TRDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 234
>gi|154250891|ref|YP_001411715.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
gi|154154841|gb|ABS62058.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
Length = 214
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH ++W AID +A RH LT SGLA+ AGLDPT+FNKSKR GR RWP+TES+ +IL
Sbjct: 5 LSHNRLWAAIDALAGRHGLTASGLAKAAGLDPTTFNKSKRVTAAGRPRWPNTESLARILD 64
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ L L +DG ++ +PL+ +G GGFFD FP G+ W V P+
Sbjct: 65 ATGSSLEDFLVL-VADGEVAFTPQRHVPLIGLAQAGRGGFFDDAGFPVGSGWEEVAFPDF 123
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ H YA++ SM P YR GDI++++ ++ GDR+++K +++AK
Sbjct: 124 KDEH--AYALE-------VSGDSMEPFYRAGDIIVVSPGAEIRRGDRVVVKTAGDEVMAK 174
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VL + IDL SLN Y +++ +I W+ARI+WASQ
Sbjct: 175 VLARKTATRIDLQSLNPAYEDRSLKPEEIVWMARIIWASQ 214
>gi|189022624|ref|YP_001932365.1| Peptidase family S24 [Brucella abortus S19]
gi|260544608|ref|ZP_05820429.1| peptidase family S24 [Brucella abortus NCTC 8038]
gi|261756989|ref|ZP_06000698.1| peptidase family S24 [Brucella sp. F5/99]
gi|306839063|ref|ZP_07471883.1| Peptidase family S24 [Brucella sp. NF 2653]
gi|306841676|ref|ZP_07474363.1| Peptidase family S24 [Brucella sp. BO2]
gi|189021198|gb|ACD73919.1| Peptidase family S24 [Brucella abortus S19]
gi|260097879|gb|EEW81753.1| peptidase family S24 [Brucella abortus NCTC 8038]
gi|261736973|gb|EEY24969.1| peptidase family S24 [Brucella sp. F5/99]
gi|306288206|gb|EFM59590.1| Peptidase family S24 [Brucella sp. BO2]
gi|306405886|gb|EFM62145.1| Peptidase family S24 [Brucella sp. NF 2653]
Length = 223
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64
Query: 62 LAATNET-------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ AT T I + LP G T+ IPLL +G+GG+FD FP G
Sbjct: 65 MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQG 123
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 124 WDIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVR 174
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 175 TRDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223
>gi|225686559|ref|YP_002734531.1| Repressor protein C [Brucella melitensis ATCC 23457]
gi|256111295|ref|ZP_05452321.1| DNA-binding protein RDGA [Brucella melitensis bv. 3 str. Ether]
gi|265992801|ref|ZP_06105358.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|225642664|gb|ACO02577.1| Repressor protein C [Brucella melitensis ATCC 23457]
gi|262763671|gb|EEZ09703.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|326410945|gb|ADZ68009.1| Repressor protein C [Brucella melitensis M28]
gi|326554236|gb|ADZ88875.1| Repressor protein C [Brucella melitensis M5-90]
Length = 218
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 140/227 (61%), Gaps = 17/227 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVME 61
Query: 64 ATNETICQLL-------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + + LP G T+ IPLL +G+GG+FD FP G W+
Sbjct: 62 ATGATFDEFIRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|17988843|ref|NP_541476.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. 16M]
gi|256043668|ref|ZP_05446593.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. Rev.1]
gi|265990088|ref|ZP_06102645.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|17984666|gb|AAL53740.1| DNA-binding protein rdga [Brucella melitensis bv. 1 str. 16M]
gi|263000757|gb|EEZ13447.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 218
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 140/227 (61%), Gaps = 17/227 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVME 61
Query: 64 ATNETICQLL-------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + + LP G T+ IPLL +G+GG+FD FP G W+
Sbjct: 62 ATGATFDEFIRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAKAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|23500526|ref|NP_699966.1| S24 family peptidase [Brucella suis 1330]
gi|62317372|ref|YP_223225.1| S24 family peptidase [Brucella abortus bv. 1 str. 9-941]
gi|83269348|ref|YP_418639.1| S24 family peptidase [Brucella melitensis biovar Abortus 2308]
gi|148558376|ref|YP_001257738.1| S24 family peptidase [Brucella ovis ATCC 25840]
gi|161620851|ref|YP_001594737.1| repressor protein C [Brucella canis ATCC 23365]
gi|163844918|ref|YP_001622573.1| hypothetical protein BSUIS_B0784 [Brucella suis ATCC 23445]
gi|254695818|ref|ZP_05157646.1| Peptidase family S24 [Brucella abortus bv. 3 str. Tulya]
gi|254698652|ref|ZP_05160480.1| Peptidase family S24 [Brucella abortus bv. 2 str. 86/8/59]
gi|254700006|ref|ZP_05161834.1| Peptidase family S24 [Brucella suis bv. 5 str. 513]
gi|254703127|ref|ZP_05164955.1| Peptidase family S24 [Brucella suis bv. 3 str. 686]
gi|254705728|ref|ZP_05167556.1| Peptidase family S24 [Brucella pinnipedialis M163/99/10]
gi|254720098|ref|ZP_05181909.1| Peptidase family S24 [Brucella sp. 83/13]
gi|254732099|ref|ZP_05190677.1| Peptidase family S24 [Brucella abortus bv. 4 str. 292]
gi|256015557|ref|YP_003105566.1| peptidase, S24 family [Brucella microti CCM 4915]
gi|256157535|ref|ZP_05455453.1| Peptidase family S24 [Brucella ceti M490/95/1]
gi|256253490|ref|ZP_05459026.1| Peptidase family S24 [Brucella ceti B1/94]
gi|256256056|ref|ZP_05461592.1| Peptidase family S24 [Brucella abortus bv. 9 str. C68]
gi|260167569|ref|ZP_05754380.1| Peptidase family S24 [Brucella sp. F5/99]
gi|260759885|ref|ZP_05872233.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260763123|ref|ZP_05875455.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882275|ref|ZP_05893889.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261216238|ref|ZP_05930519.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|261220617|ref|ZP_05934898.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313149|ref|ZP_05952346.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261750489|ref|ZP_05994198.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261753747|ref|ZP_05997456.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|265985104|ref|ZP_06097839.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265996036|ref|ZP_06108593.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|297249410|ref|ZP_06933111.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196]
gi|306846010|ref|ZP_07478577.1| Peptidase family S24 [Brucella sp. BO1]
gi|23464158|gb|AAN33971.1| peptidase, S24 family [Brucella suis 1330]
gi|62197565|gb|AAX75864.1| peptidase, S24 family [Brucella abortus bv. 1 str. 9-941]
gi|82939622|emb|CAJ12611.1| Peptidase family S24:Peptidase S24, C-terminal [Brucella melitensis
biovar Abortus 2308]
gi|148369661|gb|ABQ62533.1| peptidase, S24 family [Brucella ovis ATCC 25840]
gi|161337662|gb|ABX63966.1| Repressor protein C [Brucella canis ATCC 23365]
gi|163675641|gb|ABY39751.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|255998217|gb|ACU49904.1| peptidase, S24 family [Brucella microti CCM 4915]
gi|260670203|gb|EEX57143.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673544|gb|EEX60365.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260871803|gb|EEX78872.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917845|gb|EEX84706.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260919201|gb|EEX85854.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261302175|gb|EEY05672.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261740242|gb|EEY28168.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261743500|gb|EEY31426.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262550333|gb|EEZ06494.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264663696|gb|EEZ33957.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|297173279|gb|EFH32643.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196]
gi|306273645|gb|EFM55490.1| Peptidase family S24 [Brucella sp. BO1]
Length = 218
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 140/227 (61%), Gaps = 17/227 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVME 61
Query: 64 ATNET-------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T I + LP G T+ IPLL +G+GG+FD FP G W+
Sbjct: 62 ATGATFDEFTRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|254690871|ref|ZP_05154125.1| Peptidase family S24 [Brucella abortus bv. 6 str. 870]
gi|260756453|ref|ZP_05868801.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260676561|gb|EEX63382.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
Length = 218
Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 140/227 (61%), Gaps = 17/227 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVME 61
Query: 64 ATNET-------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T I + LP G T+ IPLL +G+GG+FD FP G W+
Sbjct: 62 ATGATFDEFTRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SL+ +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLDPEHPNRIFESKDIEWIARILWASQ 218
>gi|256059031|ref|ZP_05449240.1| Peptidase family S24 [Brucella neotomae 5K33]
gi|261322976|ref|ZP_05962173.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261298956|gb|EEY02453.1| conserved hypothetical protein [Brucella neotomae 5K33]
Length = 218
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 140/227 (61%), Gaps = 17/227 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH+ +W AID +AER++L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 2 FSHESVWAAIDALAERYSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVME 61
Query: 64 ATNET-------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T I + LP G T+ IPLL +G+GG+FD FP G W+
Sbjct: 62 ATGATFDEFTRLIAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|209883821|ref|YP_002287678.1| peptidase S24 [Oligotropha carboxidovorans OM5]
gi|209872017|gb|ACI91813.1| peptidase S24 [Oligotropha carboxidovorans OM5]
Length = 207
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 137/220 (62%), Gaps = 14/220 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+DR+A R L+PSGLA++AGLDPT+FNKSKR +GR RWPSTES+ K LA
Sbjct: 2 MTHDQIWAALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTNDGRERWPSTESVAKALA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ S RT ++PLL F +GSGG+FD G FP G WN VG+P +
Sbjct: 62 ATGVSVDTFAHFIESSSRTV-----QVPLLGFAEAGSGGYFDDGGFPVGEGWNEVGLPSV 116
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H YA++ SM P YR GD+++++ + GDR+++K + G+++ K
Sbjct: 117 NDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGAPIRRGDRVVVKTKDGEVMVK 167
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R + I+L SLN +P T ++I+WIARI+WASQ
Sbjct: 168 ELRRRTQKVIELQSLNPAHPDRTFPTAEIDWIARIVWASQ 207
>gi|154245416|ref|YP_001416374.1| putative phage repressor [Xanthobacter autotrophicus Py2]
gi|154159501|gb|ABS66717.1| putative phage repressor [Xanthobacter autotrophicus Py2]
Length = 225
Score = 178 bits (451), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 136/233 (58%), Gaps = 22/233 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H ++W AID++AE+H L+ SGLAR++GLDPT+FN+SKR +GR RWPSTESI K L+
Sbjct: 2 LTHGQVWRAIDQLAEQHGLSTSGLARRSGLDPTTFNRSKRITTDGRLRWPSTESIAKALS 61
Query: 64 ATNETICQLLDLPF--------SDGRTTEKKE-----KEIPLLYFPPSGSGGFFDSGVFP 110
AT + + + G E + IP + F +GSGGFFD FP
Sbjct: 62 ATGTSAELFFAMMVPADERHGGAHGFAEESQPLTGPIHAIPQIGFAQAGSGGFFDDAGFP 121
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G W+ + PE+ H YA++ SM P+YR GDI++++ V GDR
Sbjct: 122 VGTGWDEIAFPEVEDQH--AYALE-------IAGDSMQPVYRNGDIVVVSPGTPVRRGDR 172
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++K R G+++AK L+ + R ++L SLN + + + +EW+ARI+WASQ
Sbjct: 173 VVVKTREGEVLAKELVRKTTRHVELRSLNPAHEDRQIPLDQLEWMARIIWASQ 225
>gi|239787365|emb|CAX83841.1| Predicted transcriptional regulator [uncultured bacterium]
Length = 210
Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 138/221 (62%), Gaps = 17/221 (7%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
H IW AIDR+A +H LT SGLARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L AT
Sbjct: 4 HADIWHAIDRLAFKHGLTASGLARKAGLDPTTFNKSKRTSPEGKLRWPSTESVAKVLTAT 63
Query: 66 NETICQ---LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
+I + ++D P G + IPL+ +GS G+FD +PTG W+ + PE
Sbjct: 64 GASIAEFVTMIDNPDETGAV-----QRIPLIGLAQAGSDGYFDDAGYPTGAGWDEIPFPE 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + YA++ T D SM PLYR+GDI+I++ A Q+ DR+++K G+++
Sbjct: 119 MGD--SKAYALEI------TGD-SMEPLYREGDIVIVSPAAQIRRADRVIVKTNDGEVMV 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L+ R + +DL SLN +P ++ + ++ I R++WASQ
Sbjct: 170 KQLLRRTAKFVDLQSLNDQHPNRSLPIEEVALIHRVVWASQ 210
>gi|163761294|ref|ZP_02168369.1| putative phage-related transcriptional regulator [Hoeflea
phototrophica DFL-43]
gi|162281451|gb|EDQ31747.1| putative phage-related transcriptional regulator [Hoeflea
phototrophica DFL-43]
Length = 226
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 16/229 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW A+D +AERH LT SGLAR+AGLDPT+FNKSKR G +GR+RWPSTES+ K+L
Sbjct: 5 LSHERIWSALDALAERHGLTASGLARRAGLDPTAFNKSKRRGADGRDRWPSTESLAKVLD 64
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE---------IPLLYFPPSGSGGFFDSGVFPTGNK 114
AT ++ + L R E IPLL F +GSGGFFD G FP G
Sbjct: 65 ATGSSLNDFMSLVVGGQRNDASAIPEGAFPPQAGSIPLLGFAQAGSGGFFDDGGFPAGQG 124
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P S G+YA++ Q SMLPLYR GDILI+ QV GDR++++
Sbjct: 125 WDVVDFPAQPSERPGVYALE-------VQGDSMLPLYRDGDILIVEPGAQVRRGDRVVVR 177
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AKVL RS++L+SLN +P + E+S+I+W+ARI+WASQ
Sbjct: 178 SGEGEVMAKVLNRLSPRSVELISLNPDHPNRSFELSEIDWMARIIWASQ 226
>gi|296446773|ref|ZP_06888712.1| putative phage repressor [Methylosinus trichosporium OB3b]
gi|296255776|gb|EFH02864.1| putative phage repressor [Methylosinus trichosporium OB3b]
Length = 213
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR +G RWPSTESI K+L
Sbjct: 5 LTHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRQTADGHLRWPSTESIAKVLQ 64
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT + + + L S G + + PL+ +G GGFFD F G W + V
Sbjct: 65 ATGAGLDEFMTLVSSKGARPSRSAR--PLIGLAQAGVGGFFDDAGFAIGAGWEEIDVLAD 122
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H+ YA++ SM PLYR GDI+I++ + V GDR+++K G+I+AK
Sbjct: 123 TDEHS--YALE-------ISGDSMAPLYRDGDIVIVSPSAPVRRGDRVVVKTIAGEILAK 173
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L + ++++L SLN +P + ++ W+ARILWASQ
Sbjct: 174 ELKRQTAKTVELKSLNPAFPDRVLPKEEVSWMARILWASQ 213
>gi|86751722|ref|YP_488218.1| putative phage repressor [Rhodopseudomonas palustris HaA2]
gi|86574750|gb|ABD09307.1| putative phage repressor [Rhodopseudomonas palustris HaA2]
Length = 210
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 139/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAATN I + L R + +PLL +G+GGFFD G FP G W+ +G+
Sbjct: 61 ALAATNTAIDTFVQLITDRPRVVQ----SVPLLGLAQAGAGGFFDDGGFPAGKGWDEIGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P I H YA++ SM P YR GDI++++ + GDR+++K +G++
Sbjct: 117 PSINDEH--AYALE-------ISGESMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTSGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + ++L SLN +P T+ +D+EWIARI+WASQ
Sbjct: 168 MVKELKRRTTKIVELASLNPSHPDRTLAPADVEWIARIVWASQ 210
>gi|188581313|ref|YP_001924758.1| phage repressor [Methylobacterium populi BJ001]
gi|179344811|gb|ACB80223.1| putative phage repressor [Methylobacterium populi BJ001]
Length = 210
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 13/221 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L+
Sbjct: 2 LSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVLS 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPE 122
AT ++ L L G+ + + +PL+ +GSG F PTG W+ + P+
Sbjct: 62 ATGASLDDFLHL-VDSGQASAR--TMVPLIGLTQAGSGRLFTEEGIPTGGPGWDEIEFPD 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H +A++ Q SMLPLYR GD+LI+ + GDR++ + G++VA
Sbjct: 119 LGGDH--AFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVVA 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R R+I+L SLN + V ++++ W+AR++W Q
Sbjct: 170 KELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210
>gi|163851531|ref|YP_001639574.1| peptidase S24/S26 domain-containing protein [Methylobacterium
extorquens PA1]
gi|163663136|gb|ABY30503.1| peptidase S24 and S26 domain protein [Methylobacterium extorquens
PA1]
Length = 210
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 133/221 (60%), Gaps = 13/221 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+LA
Sbjct: 2 LSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVLA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPE 122
AT ++ L L S T +PL+ +GSG F+ PTG W+ + P+
Sbjct: 62 ATGASLDDFLHLVDSGQGPTRTM---VPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFPD 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + +A++ Q SMLPLYR GD+LI+ + GDR++ + G+++A
Sbjct: 119 LGG--DRAFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVLA 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R R+I+L SLN + V ++D+ W+AR++W Q
Sbjct: 170 KELRRRTARTIELASLNPDHEDRAVPLADVAWMARVMWVRQ 210
>gi|144899439|emb|CAM76303.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
MSR-1]
Length = 212
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H IW A+D +A + LT S LAR+AGLDPT+FNKSKR EG+ RWPSTES+ K+L
Sbjct: 2 LTHADIWAALDSLARDNGLTASALARRAGLDPTTFNKSKRITREGKLRWPSTESVAKVLD 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ QLL+ K IPL+ +G G+FD +P G W+ + PE+
Sbjct: 62 ATGSSLGQLLNYIDDSLPAPVVKGATIPLIGSAQAGDRGYFDDAGYPCGGGWDEIPFPEV 121
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ YA++ SM PLYR GDI+I++ A V GDR+++K G+++ K
Sbjct: 122 G--DSNAYALE-------VSGDSMEPLYRDGDIVIVSPAASVRRGDRVVVKTLEGEVMVK 172
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
LI + + I+L SLN +P ++ ++ W+ARILWASQ
Sbjct: 173 QLIRQTAKRIELASLNPAHPGRSLAAEEVSWLARILWASQ 212
>gi|254561298|ref|YP_003068393.1| LexA/Signal peptidase [Methylobacterium extorquens DM4]
gi|254268576|emb|CAX24533.1| putative LexA/Signal peptidase [Methylobacterium extorquens DM4]
Length = 210
Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 13/221 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+LA
Sbjct: 2 LSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVLA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPE 122
AT ++ L L S T +PL+ +GSG F+ PTG W+ + P+
Sbjct: 62 ATGASLDDFLHLVDSGQAPTRTM---VPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFPD 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + +A++ Q SMLPLYR GD+LI+ + GDR++ + G+++A
Sbjct: 119 LGG--DRAFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVLA 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R R+I+L SLN + V ++++ W+AR++W Q
Sbjct: 170 KELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210
>gi|218530341|ref|YP_002421157.1| phage repressor [Methylobacterium chloromethanicum CM4]
gi|240138699|ref|YP_002963171.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1]
gi|218522644|gb|ACK83229.1| putative phage repressor [Methylobacterium chloromethanicum CM4]
gi|240008668|gb|ACS39894.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1]
Length = 210
Score = 171 bits (432), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 13/221 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+LA
Sbjct: 2 LSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVLA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPE 122
AT ++ L L S T +PL+ +GSG F+ PTG W+ + P+
Sbjct: 62 ATGASLDDFLHLVDSGQGPTRTM---VPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFPD 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + +A++ Q SMLPLYR GD+LI+ + GDR++ + G+++A
Sbjct: 119 LGG--DRAFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVLA 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R R+I+L SLN + V ++++ W+AR++W Q
Sbjct: 170 KELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210
>gi|110632380|ref|YP_672588.1| putative phage repressor [Mesorhizobium sp. BNC1]
gi|110283364|gb|ABG61423.1| putative phage repressor [Chelativorans sp. BNC1]
Length = 214
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 11/222 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+K+W AID +A RH+L+ SGLARKAGLD T+FN+SKR +GR RWPSTES+ KI+
Sbjct: 2 LSHEKVWAAIDALAARHSLSASGLARKAGLDSTAFNRSKRHSPDGRPRWPSTESLAKIMD 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
AT T+ + L + +K I PL+ F +G+GG+F FP G W V +P
Sbjct: 62 ATGVTLGEFTALIEEMAESGRRKPGRISVPLIGFAQAGAGGYFTDAGFPVGQGWEQVELP 121
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
S YA++ Q SMLPLYR GD+L++ + V GDR++++ G+++
Sbjct: 122 GQVS--EAAYALE-------VQGDSMLPLYRNGDVLVVEPSAPVRRGDRVVVRTLDGEVM 172
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AK+L+ + R ++L+SLN +P + +++WIARI+WASQ
Sbjct: 173 AKILLRQTSRQMELLSLNPDHPNRVLGHEEVDWIARIVWASQ 214
>gi|209966574|ref|YP_002299489.1| peptidase family S24, putative [Rhodospirillum centenum SW]
gi|209960040|gb|ACJ00677.1| peptidase family S24, putative [Rhodospirillum centenum SW]
Length = 214
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 11/220 (5%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
H +IW AIDR+A RH L+ SGLA++ GLDPT+FN+SKR +G+ RWPSTES+ K+L AT
Sbjct: 4 HAEIWRAIDRLAARHGLSASGLAKRGGLDPTTFNRSKRVTHDGKLRWPSTESLAKVLEAT 63
Query: 66 NETICQLLDLPFSD--GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
N T L+ L G+ + +P++ + +GS GFFD +P GN W+ + P +
Sbjct: 64 NSTFADLVALAGDGPVGQAAPVHVQRVPVIGYAQAGSDGFFDDAGYPVGNGWDELEFPHL 123
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
P+ YA++ SM PLYR GD++I++ V GDR++++ R G+++AK
Sbjct: 124 GDPN--AYALE-------ISGDSMEPLYRDGDVIIVSPGASVRRGDRVVVRTREGEVMAK 174
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L ++L SLN +P T+ M+++ W+ARILWASQ
Sbjct: 175 QLARLTANRLELQSLNKAHPDRTLAMTEVAWMARILWASQ 214
>gi|23015760|ref|ZP_00055528.1| COG2932: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 211
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H IW AID +A H LT S LARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L
Sbjct: 2 LKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRVTREGKPRWPSTESVAKVLE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT T+ + D + IPL+ F +G G+FD +P G W+ + PEI
Sbjct: 62 ATGATMTAFVGY-IEDTAQARQTANTIPLIGFAQAGDCGYFDDAGYPVGGSWDEIPFPEI 120
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
PH YA++ SM PLYR GD++I++ A V GDR++++ G+++ K
Sbjct: 121 GDPHA--YALE-------VSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVMVK 171
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L+ + + I+L S+N +P ++ ++ WIARILW+SQ
Sbjct: 172 QLVRQTAKRIELASINPAHPGRSLATEEVAWIARILWSSQ 211
>gi|170746983|ref|YP_001753243.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831]
gi|170653505|gb|ACB22560.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831]
Length = 210
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 21/225 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTES+ K+LA
Sbjct: 2 LSHEQIWNAIDRLAERHGYSASGLARRAGLDATSFNRSKRVGADGRKRWPSTESVSKVLA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTV 118
AT ++ + L R E +E +PL+ +G+G F PTG W +
Sbjct: 62 ATGSSLDEFL-------RLIEAREIPARTMVPLIGLTQAGAGRLFTDEGMPTGGAGWEEI 114
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
P++ +A++ Q SMLPL+R GD+LI++ V GDR++++ G
Sbjct: 115 EFPDLGEER--AFALE-------IQGDSMLPLFRDGDVLIVSPTASVRKGDRVVVRLHGG 165
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AK L R R+++L SLN + + + ++ W+AR++W Q
Sbjct: 166 EVLAKELRRRTARTVELASLNPEHEDRVLNLGEVAWMARVMWVRQ 210
>gi|328544878|ref|YP_004304987.1| peptidase S24-like domain protein [polymorphum gilvum SL003B-26A1]
gi|326414620|gb|ADZ71683.1| Peptidase S24-like domain protein [Polymorphum gilvum SL003B-26A1]
Length = 215
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 12/223 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+++W AID +A R L+PSGLAR+AGLDPT+FN SKR +GR RWPSTES+ K+L
Sbjct: 2 LSHERVWAAIDALATRKGLSPSGLARRAGLDPTTFNPSKRIAGDGRPRWPSTESLAKVLE 61
Query: 64 ATNETICQLLDL--PF-SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
AT + + + L P +D +P G+FD P G W+ +
Sbjct: 62 ATGAPLAEFVALAAPLETDSAPPATSPMTVPFAGLDRVACEGYFDPTGNPIGRNWDEIPF 121
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P++R +YA++ ++LP+YR GDIL++ + V GDR+++K ++G++
Sbjct: 122 PDLRG--EILYALE-------VSGNALLPVYRDGDILVVAPDVPVRRGDRVIVKVKSGEV 172
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ ++L R R+++L SL V E+ IEWIARI+WASQ
Sbjct: 173 IIRLLHRRTARTVELHSLAPSGTVHQCELDSIEWIARIVWASQ 215
>gi|83313328|ref|YP_423592.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82948169|dbj|BAE53033.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 223
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H IW AID +A H LT S LARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L
Sbjct: 14 LKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRITREGKPRWPSTESVAKVLE 73
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + D + IPL+ F +G G+FD +P G W+ + PEI
Sbjct: 74 ATGASMTAFVAY-IEDLAQPHNQASTIPLVGFAQAGDRGYFDDAGYPVGGSWDEIPFPEI 132
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
PH YA++ SM PLYR GD++I++ A V GDR++++ G+++ K
Sbjct: 133 GDPH--AYALE-------VSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVMVK 183
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L+ + R I+L S+N +P ++ ++ W+ARILW+SQ
Sbjct: 184 QLLRQTARRIELGSINPAHPGRSLATEEVAWMARILWSSQ 223
>gi|91975266|ref|YP_567925.1| putative phage repressor [Rhodopseudomonas palustris BisB5]
gi|91681722|gb|ABE38024.1| peptidase S24, S26A and S26B [Rhodopseudomonas palustris BisB5]
Length = 210
Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+ SGLA+++GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MHMLTHDQIWTALDRLAERAGLSASGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAATN I + L R + +PLL +G+GGFFD G FP G W VG+
Sbjct: 61 ALAATNTAIDTFVQLITDRPRVVQ----SVPLLGLAQAGAGGFFDDGGFPAGKGWEEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GDI++++ + GDR+++K G++
Sbjct: 117 PSVNDEH--AYALE-------ISGDSMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTGGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + ++L SLN + T+ +D+EWIARI+WASQ
Sbjct: 168 MVKELKRRTTKIVELASLNPSHADRTLAPADVEWIARIVWASQ 210
>gi|114704909|ref|ZP_01437817.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi
HTCC2506]
gi|114539694|gb|EAU42814.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi
HTCC2506]
Length = 216
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 141/224 (62%), Gaps = 13/224 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH +IW AID +A+R+ LTPSGLARKAGLDPT+FNKSKR +GR RWPSTES+ KI
Sbjct: 2 FSHDEIWSAIDALAKRNGLTPSGLARKAGLDPTTFNKSKRQSTDGRPRWPSTESLSKIFE 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
A N + L D ++ K + +PLL +G GGFFD FP G+ W+ +
Sbjct: 62 AVNSSFGDFAQLVSGDDAESDSKVRSKPVSVPLLGLAEAGGGGFFDDAGFPAGHGWDEIT 121
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
+P+ + +YA++ SM PLYR+GD ++++ V GDR+++K R G+
Sbjct: 122 LPDGK--DEPMYALE-------VSGRSMEPLYREGDRIVVSPTASVRRGDRVVVKTREGE 172
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AK+L + R+I+L SLN +P+ + +I+W+ARI+WA+Q
Sbjct: 173 VMAKILQRQTARTIELSSLNPDFPLRQFAVEEIDWLARIVWATQ 216
>gi|114799918|ref|YP_759340.1| S24 family peptidase [Hyphomonas neptunium ATCC 15444]
gi|114740092|gb|ABI78217.1| peptidase, S24 family [Hyphomonas neptunium ATCC 15444]
Length = 205
Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 119/220 (54%), Gaps = 15/220 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
HK IW +D +A H LT S LA++AGLDPTSFN SKR +GR RWPSTES+ ++L
Sbjct: 1 MQHKDIWRGLDLLAAHHGLTASALAKRAGLDPTSFNPSKREAADGRPRWPSTESLARVLD 60
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
A L ++ PL+ F +G GFFD FP G W V P +
Sbjct: 61 AVGAGFDDFAAL------VEGRRGGSAPLIGFAQAGQDGFFDDAGFPVGAGWEEVRFPGL 114
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ +YA++ SM P YR GD +I+ +V GDR++ K G+++AK
Sbjct: 115 GA--ETVYALE-------ISGDSMEPAYRAGDRIIVAPGAEVKPGDRVVAKTVAGEVMAK 165
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VL + R I+L SLN YP + S++ W+ARILWASQ
Sbjct: 166 VLARKNTRLIELASLNPAYPAREFKPSEVAWLARILWASQ 205
>gi|315499624|ref|YP_004088427.1| phage repressor [Asticcacaulis excentricus CB 48]
gi|315417636|gb|ADU14276.1| putative phage repressor [Asticcacaulis excentricus CB 48]
Length = 209
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 132/226 (58%), Gaps = 23/226 (10%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--RNRWPSTESIFK 60
S SH +IW AIDR+A +PSGLAR AGLDPT+FNKSKR E R RWPSTES+ K
Sbjct: 2 SLSHAQIWNAIDRLARNLGTSPSGLARLAGLDPTAFNKSKRQSTEDPPRPRWPSTESLAK 61
Query: 61 ILAATNETICQLLDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
+L AT ++ L TE + K +PL+ F +G+ G FD FP G W+ +
Sbjct: 62 VLDATGQSFPDFAAL-------TEPRPVPKGVPLIGFAQAGNDGLFDDAGFPVGQGWDEI 114
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRT 177
G+P G+YA++ SMLPLYR GD +I++ Q + GDR+++K
Sbjct: 115 GLPA----GEGLYALE-------ISGDSMLPLYRDGDRIIVDPLRQNLRRGDRVVVKTSE 163
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK L+ + ++L SLN + +E S + W+ARI+WASQ
Sbjct: 164 GEVMAKELVRLTEKQVELRSLNPDFSNRVLERSQVTWLARIVWASQ 209
>gi|254292703|ref|YP_003058726.1| phage repressor [Hirschia baltica ATCC 49814]
gi|254041234|gb|ACT58029.1| putative phage repressor [Hirschia baltica ATCC 49814]
Length = 206
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 125/219 (57%), Gaps = 16/219 (7%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAA 64
H IW ID +A RH L+ S LAR AGLD T+FNKSKR +G + RWPSTES+ K LAA
Sbjct: 3 HSDIWNGIDALAARHGLSVSALARAAGLDATAFNKSKRASADGSKPRWPSTESLSKALAA 62
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
+ D+ + GR + + IPL+ +G GGFFD FP G W+ + P++
Sbjct: 63 VGTGWEEFADM--AQGR----QGRTIPLIGLAQAGDGGFFDDAGFPVGASWDDIHFPDMG 116
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
+YA++ SM P++R+GD +I+ + V GDR++ K + G+++AK
Sbjct: 117 D--ETVYALEISGD-------SMEPVFREGDRIIVAPGMDVRRGDRVVAKTKEGEVLAKF 167
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L ++L+S N YP SDIEWIARILWASQ
Sbjct: 168 LGHLSASRVELISANPAYPPREFAASDIEWIARILWASQ 206
>gi|83859576|ref|ZP_00953096.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633]
gi|83851935|gb|EAP89789.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633]
Length = 210
Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 15/224 (6%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIF 59
M +H +IW IDR+A R LTPSGLAR+AGLDPT+FN SKR +G + RWPSTES+
Sbjct: 1 MPMLTHAQIWSGIDRLAHRAGLTPSGLARRAGLDPTTFNPSKRTSADGAKPRWPSTESLA 60
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
K L AT + L G T + +PLL F +G G+FD FPTG W +
Sbjct: 61 KALEATRVSFDDFAALAM--GHTAGRS---VPLLGFAQAGDHGYFDDAGFPTGEGWEDIR 115
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P G YA++ SM P+YR GD ++++ GDR+++K R+G+
Sbjct: 116 FPGDEG--EGAYALEISGE-------SMSPVYRHGDRIVVSPDAPPRRGDRVVVKTRSGE 166
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AK L S++L+SLN Y + D+ W+ARI+WASQ
Sbjct: 167 VMAKELGRVTAESVELISLNPSYDNRILSTRDLVWMARIVWASQ 210
>gi|90418702|ref|ZP_01226613.1| putative transcription regulator [Aurantimonas manganoxydans
SI85-9A1]
gi|90336782|gb|EAS50487.1| putative transcription regulator [Aurantimonas manganoxydans
SI85-9A1]
Length = 215
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 142/225 (63%), Gaps = 16/225 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSH +IW AID +A RH ++PSGLAR+AGLDPT+FNKSKR +GR RWPSTESI K++A
Sbjct: 2 FSHDRIWLAIDALATRHRMSPSGLARRAGLDPTTFNKSKRNASDGRPRWPSTESIAKVIA 61
Query: 64 ATNETICQLLDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
AT +I + L G T + +PLL F +G GGFFD FP G W+ +
Sbjct: 62 ATGTSIEEFAAL--MRGETPGVPRSPSPAMSVPLLGFAEAGGGGFFDDSGFPAGQGWDEI 119
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+P + +YA++ SM+PLYR GDILI++ A V GDR++++ R G
Sbjct: 120 ALPS--TGDETVYALE-------VSGQSMMPLYRDGDILIVSPAAAVRRGDRVVVRTREG 170
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AK+L + R+I+L S N +P +M ++EW+ARILWASQ
Sbjct: 171 EVMAKILQRQTSRTIELASTNPDFPDRQFQMDEVEWMARILWASQ 215
>gi|302383458|ref|YP_003819281.1| phage repressor [Brevundimonas subvibrioides ATCC 15264]
gi|302194086|gb|ADL01658.1| putative phage repressor [Brevundimonas subvibrioides ATCC 15264]
Length = 211
Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 17/224 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFK 60
S SH ++W A+D +A R L+ S LARKAGLD T+FN SKRF G+ R RWPSTES+
Sbjct: 2 SLSHDRLWTALDTLARRQGLSSSALARKAGLDATAFNPSKRFGPGVPPRPRWPSTESLNL 61
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
IL AT ++ + L + PLL +G+ GFFD PTG+ W +
Sbjct: 62 ILEATGTSLAEFAAL----ADDAPARIATAPLLGMAQAGADGFFDDAGLPTGDGWEQTDL 117
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGD 179
P SP ++++ SM+PLYR+GD +L+ V GDR++ + R+G+
Sbjct: 118 P---SPKESLFSLL-------ISGDSMVPLYREGDRVLVDRERTDVRKGDRVVARTRSGE 167
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AK + + R++ L S+N YP + +D++W+ARILW SQ
Sbjct: 168 TLAKQIEALTARTVTLASINPAYPPRVLARADVDWMARILWVSQ 211
>gi|170741440|ref|YP_001770095.1| peptidase S24/S26 domain-containing protein [Methylobacterium sp.
4-46]
gi|168195714|gb|ACA17661.1| peptidase S24 and S26 domain protein [Methylobacterium sp. 4-46]
Length = 209
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 118/217 (54%), Gaps = 12/217 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH +IW AID +A+RH LTPSGLA++AGLDPTSFN+SKR +GR RWPSTES+ KILA
Sbjct: 2 LSHDRIWSAIDHLAQRHRLTPSGLAKRAGLDPTSFNRSKRVAPDGRRRWPSTESLAKILA 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT T+ + + L +PL+ G PTG+ W+ + P++
Sbjct: 62 ATGATLDEFVQLVSP---RAAAGAAVVPLIGSAALAVAGRIGPDGRPTGSAWDELDFPDL 118
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ +Q D R PLY GD+L++ + + GDR+L+ RTG +V
Sbjct: 119 GTQDCFAIEVQGNDLR---------PLYHDGDVLVVCATAPMRRGDRILVSLRTGALVGA 169
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
VL R R DL + ++ ++I W+ARI+W
Sbjct: 170 VLRRRTARVADLAPVMPGEAARSIATAEIAWMARIMW 206
>gi|326403286|ref|YP_004283367.1| putative peptidase S24 [Acidiphilium multivorum AIU301]
gi|325050147|dbj|BAJ80485.1| putative peptidase S24 [Acidiphilium multivorum AIU301]
Length = 223
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 121/232 (52%), Gaps = 21/232 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H+ IW AID +A + L+ S LAR AGLDPTSFN SKR +GR RWPSTESI KIL+
Sbjct: 1 MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60
Query: 64 ATNETICQLLDL-------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
A++ I L P R + +PL +G GGFFD G PTG W+
Sbjct: 61 ASSIGIEAFAALVGGRSTTPAGTSRPRRPAVRTVPLASLAQAGQGGFFDEGGNPTGGGWD 120
Query: 117 TVGVPE-----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ +P PH IQ SM P+YR GDI++++ A V GDR+
Sbjct: 121 RIALPVGDAGIAGDPHAFALTIQGD---------SMDPVYRDGDIIVVSPASPVRTGDRV 171
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+I+ G+++A+ L+ R +DL N YP +I + RI+WASQ
Sbjct: 172 VIRTAGGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223
>gi|295687529|ref|YP_003591222.1| putative phage repressor [Caulobacter segnis ATCC 21756]
gi|295429432|gb|ADG08604.1| putative phage repressor [Caulobacter segnis ATCC 21756]
Length = 214
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 13/225 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESI 58
M + SH +IW AID +A+R ++TPS +AR AGLDPTSFN+SKR E GR RWPSTES+
Sbjct: 1 MATLSHGEIWRAIDALADRFDMTPSAMARMAGLDPTSFNRSKRGSTEADGRARWPSTESL 60
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
K+L AT + L ++ PL+ +G GFFD+ P G+ W+ V
Sbjct: 61 AKLLEATGVNFSEFAALTEQSPGAGAGGKRGAPLIGLAQAGQEGFFDAAGMPVGSGWDEV 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
P++ G++A++ ++ P+YR GD L+++ ++ GDR++ + G
Sbjct: 121 AAPDL---GQGLFALE-------VSGETLAPVYRDGDRLLVSPTVEPRKGDRVVARTHAG 170
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++ + L R+I+L++L + ++ WIARI+WASQ
Sbjct: 171 EVLVRELGRVTARTIELLALGRESD-RLLSRDEVAWIARIVWASQ 214
>gi|254504422|ref|ZP_05116573.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11]
gi|222440493|gb|EEE47172.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11]
Length = 221
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 123/220 (55%), Gaps = 9/220 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+K+W AID +A + +TPSGLA++AGLDPT+FN+SKRF +GR RWPSTES+ KIL
Sbjct: 11 LSHEKVWAAIDALASYNEMTPSGLAKRAGLDPTTFNRSKRFAGDGRPRWPSTESLAKILE 70
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT E++ + +P+ F FD+ PTG W T+ P
Sbjct: 71 ATGESLKSFAGRVEAPELRPSTTLSALPVAGFSNVHEENAFDTTGRPTGEHWETIVFPTD 130
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ I+A++ ++LPLYRKGD++++ + V GDR+++KP G +
Sbjct: 131 HT--QNIFALE-------VSGDALLPLYRKGDLIVVAPSAAVRRGDRIVLKPSEGGLAVY 181
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L+ R +++ + ++ + S IEW ARI+WASQ
Sbjct: 182 TLLKRTPKTLQVQTIGDNPENAALLHSAIEWTARIIWASQ 221
>gi|254420759|ref|ZP_05034483.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
gi|196186936|gb|EDX81912.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
Length = 211
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 17/223 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFKI 61
SH K+W+A+D +A R L+PSGLAR+AGLD TSFN SKRFG R RWPSTES+ +
Sbjct: 3 LSHAKLWKAVDALARREGLSPSGLARRAGLDATSFNPSKRFGAGDPPRPRWPSTESMTLM 62
Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L AT ++ + L +PLL +G GFFD P G+ W+ +P
Sbjct: 63 LQATGVSLAEFAAL----ADDAPPTSTTVPLLGLARAGLDGFFDDAGLPVGDGWDQTELP 118
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDI 180
+ + + + SM PLYR+GD +I++ V GDR++ + +G++
Sbjct: 119 RVNATTFSL----------RISGDSMAPLYREGDRVIVDRGDPAVRRGDRVVARLTSGEV 168
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VAK L R+ L S+N YP V +IEW+ARILW SQ
Sbjct: 169 VAKELTGLTARAATLSSINPDYPPRIVPRREIEWMARILWVSQ 211
>gi|27376249|ref|NP_767778.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
gi|27349389|dbj|BAC46403.1| bll1138 [Bradyrhizobium japonicum USDA 110]
Length = 217
Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 123/220 (55%), Gaps = 13/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+DR+A R L+PSGLA++AGLDPT+FN+SKR +GR RWPSTESI K LA
Sbjct: 11 LTHDQIWVALDRLAARAGLSPSGLAKRAGLDPTTFNRSKRVTSDGRERWPSTESIAKALA 70
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
A +I L SD + +PLL +G+ G FD P+G W + +P
Sbjct: 71 AAGASIDVFAGL-ISD---ETGNSRSVPLLGLAQAGASGAFDESGLPSGKGWTELALP-- 124
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
A +Q + ++ P YR GD+++++ + GDR+++ + G++
Sbjct: 125 -------TAEDSQTFALEIAGDALAPTYRNGDVILVSPGTPIRKGDRVVVTTKAGEVTVA 177
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R +++DL+ L+ T+ ++ W+ARI+WASQ
Sbjct: 178 TLKRRTAKALDLLPLDASQAERTIAAGELAWVARIVWASQ 217
>gi|148259746|ref|YP_001233873.1| putative phage repressor [Acidiphilium cryptum JF-5]
gi|146401427|gb|ABQ29954.1| putative phage repressor [Acidiphilium cryptum JF-5]
Length = 223
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 120/232 (51%), Gaps = 21/232 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H+ IW AID +A + L+ S LAR AGLDPTSFN SKR +GR RWPSTESI KIL+
Sbjct: 1 MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60
Query: 64 ATNETICQLLDL-------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
A++ I L P R + +PL +G GFFD G PTG W+
Sbjct: 61 ASSIGIEAFAALVGGRSTTPAGTSRPRRPAMRTVPLASLAQAGQDGFFDEGGNPTGGGWD 120
Query: 117 TVGVPE-----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ +P PH IQ SM P+YR GDI++++ A V GDR+
Sbjct: 121 RIALPVGDAGIAGDPHAFALTIQGD---------SMDPVYRDGDIIVVSPASPVRTGDRV 171
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+I+ G+++A+ L+ R +DL N YP +I + RI+WASQ
Sbjct: 172 VIRTAGGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223
>gi|304394055|ref|ZP_07375978.1| dna-binding protein rdga [Ahrensia sp. R2A130]
gi|303293495|gb|EFL87872.1| dna-binding protein rdga [Ahrensia sp. R2A130]
Length = 232
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 133/241 (55%), Gaps = 31/241 (12%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
FSHK++W AID +A+ ++++ S LAR AGLD T+FNKSKR G +GR RWPSTES+ KI+
Sbjct: 2 FSHKQVWAAIDALAQDNDMSVSKLARTAGLDATTFNKSKRIGADGRQRWPSTESLSKIMD 61
Query: 64 ATNETICQLLDLPFSDGRTT---------------------EKKEKEIPLLYFPPSGSGG 102
AT I + DG+ + IPLL +GSGG
Sbjct: 62 ATKTDIDGFM-ATMRDGQASFAAGFAGMSETGGTYVPDAPGHPVPVSIPLLGLAQAGSGG 120
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
FFD PTG W V P+ S +YA++ SM PLYR GD ++++
Sbjct: 121 FFDDAGLPTGEGWEAVEFPQ--SDREPLYALEIAGD-------SMEPLYRDGDRIVVSPT 171
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
V GDR++++ G+I+AK L + ++++L S N + T ++++++W+ARI+W S
Sbjct: 172 ASVRRGDRVVVRTSDGEIMAKTLARQTAKTVELDSENPEHQKRTFDLTEVDWVARIMWVS 231
Query: 223 Q 223
Q
Sbjct: 232 Q 232
>gi|16124337|ref|NP_418901.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15]
gi|221233019|ref|YP_002515455.1| LexA-like transcriptional repressor [Caulobacter crescentus NA1000]
gi|13421181|gb|AAK22069.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15]
gi|220962191|gb|ACL93547.1| LexA-related transcriptional repressor [Caulobacter crescentus
NA1000]
Length = 213
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 24/230 (10%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIF 59
M + SH +IW AID +AER ++TPS +AR AGLDPTSFN+SKR E G RWPSTES+
Sbjct: 1 MATLSHGEIWRAIDALAERFDMTPSAMARMAGLDPTSFNRSKRGSAETGHARWPSTESLS 60
Query: 60 KILAATNETICQLLDLPFSDGRTTEKK------EKEIPLLYFPPSGSGGFFDSGVFPTGN 113
K+L AT + L TE+ + PL+ +G GFFD P G
Sbjct: 61 KLLEATGVNFSEFAAL-------TERSPVRAPGRRGAPLIDLAQAGKDGFFDEAGMPVGA 113
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
W+ P++ G++A++ T D + P+YR GD L+++ ++ GDR++
Sbjct: 114 GWDEAPAPDL---GEGLFALEV------TGD-DLAPVYRDGDRLLVSPTLEPRKGDRVVT 163
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ G+++ + L RSI+L++L+ + ++ WIARI+W SQ
Sbjct: 164 RTHGGEVLVRELGRVTARSIELLALDRVSGERLLSRDEVAWIARIVWVSQ 213
>gi|296532329|ref|ZP_06895067.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957]
gi|296267353|gb|EFH13240.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957]
Length = 216
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 131/223 (58%), Gaps = 14/223 (6%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
H IW A+D +A H L+PSGLARKAGLDPT+FN SKR G +GR RWPSTES+ KILAAT
Sbjct: 3 HDDIWRAVDALAAEHGLSPSGLARKAGLDPTAFNPSKRLGTDGRARWPSTESVAKILAAT 62
Query: 66 NETICQLLDLPFSDGRTTEKKEKE-----IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+ L + + IPL+ +G G+F G +P G W+ +
Sbjct: 63 GTDMESFAALVTGAAAALNRSPRSMPGRRIPLIGLAQAGGDGYFGDGGYPVGAGWDEIST 122
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
PE+ P+ YA++ SM P++R GDI+I++ V GDR++++ G++
Sbjct: 123 PELSDPN--AYALE-------ISGDSMEPVFRDGDIIIVSPNAPVRRGDRVVVRTLKGEV 173
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AK L+ + R I+L SLN +P + ++++I WI RILWASQ
Sbjct: 174 MAKELLRQSARRIELASLNPAHPGYSFDLAEIAWIHRILWASQ 216
>gi|167644106|ref|YP_001681769.1| putative phage repressor [Caulobacter sp. K31]
gi|167346536|gb|ABZ69271.1| putative phage repressor [Caulobacter sp. K31]
Length = 219
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 16/227 (7%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M+ SH +IW AID +A+R +++PS +A+ AGLDPTSFN+SKR + R RWPSTES+ K
Sbjct: 5 MSPLSHTEIWTAIDALAKRFDMSPSAMAKMAGLDPTSFNRSKRGDGDARPRWPSTESLAK 64
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+L AT + L R + +PL+ F +G+ G FD P G W+ +
Sbjct: 65 VLEATGVGFSEFAAL---TERVRPLNPRVVPLIGFAQAGAEGVFDETGAPIGAGWDEIDF 121
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + G+YA++ T D ++ P++R GD ++++ + GDR++++ G++
Sbjct: 122 PGLG--DEGVYALEI------TGD-ALAPVFRDGDRILVSPSAPPRRGDRVVVRTAGGEL 172
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVD----TVEMSDIEWIARILWASQ 223
+ K L RS++L LN D T+++ ++ WIARILWASQ
Sbjct: 173 LVKELARVTARSVELAPLNRLDGRDGGDRTLDLGEVVWIARILWASQ 219
>gi|307941488|ref|ZP_07656843.1| peptidase family S24 [Roseibium sp. TrichSKD4]
gi|307775096|gb|EFO34302.1| peptidase family S24 [Roseibium sp. TrichSKD4]
Length = 218
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 15/226 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SHK+IW AID +A R+ L+PSGLAR+AGLDPT+FN SKRFG +GR RWPSTES+ KIL
Sbjct: 2 LSHKQIWAAIDTLAARNGLSPSGLARRAGLDPTTFNPSKRFGGDGRPRWPSTESLSKILQ 61
Query: 64 ATNETICQLLDLPFSDGRTTEKKE------KEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT E++ L+++ T + + +P+ F + FD P+ W++
Sbjct: 62 ATGESLETLMEVLLGLAPTGPRAAPLAQDGRMVPIAGFSDANQQAAFDPTGRPSSPMWDS 121
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ P+ + + I + D + P YR GDILI+ + GDR+L++ +
Sbjct: 122 LLFPDPKEKNLFALEINSDD---------LTPYYRSGDILIVAPVQAIRRGDRVLVRQTS 172
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G + ++ + + D +L + +E + I+W+AR++W SQ
Sbjct: 173 GALQLFLMDRQNPSAFDFHALTPPHETVHLERTKIDWVARVMWVSQ 218
>gi|118589338|ref|ZP_01546744.1| repressor protein CI [Stappia aggregata IAM 12614]
gi|118438038|gb|EAV44673.1| repressor protein CI [Stappia aggregata IAM 12614]
Length = 227
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T SH+K+W AID +A ++ LTPSGLAR+AGLDPT+FN SKR +GR RWPSTES+ K+
Sbjct: 17 TVLSHEKVWAAIDALASQNGLTPSGLARRAGLDPTAFNPSKRVAGDGRPRWPSTESLAKV 76
Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
LAAT E + ++ + +P+ + FD+ P+G W P
Sbjct: 77 LAATGEALNTFAARVETEDAPSGSVPALVPVAALEAASDRNAFDAAGRPSGATWQQFSFP 136
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ +A+Q + + PLYR GDI+++ + GDRL +K +G +
Sbjct: 137 Q----PGASFALQVSNEDFQ-------PLYRNGDIVVVAPDAPLRTGDRLALKLTSGRLS 185
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L G + + ++ S IEW ARI+WASQ
Sbjct: 186 LYTLQEAGGEELSVRTIGENSHSLRFRHSAIEWTARIIWASQ 227
>gi|220924406|ref|YP_002499708.1| peptidase S24/S26 domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219949013|gb|ACL59405.1| peptidase S24/S26 domain-containing protein [Methylobacterium
nodulans ORS 2060]
Length = 209
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 109/219 (49%), Gaps = 16/219 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH++IW AID +A+RH LTPSGLAR+AGLD TSFN+SKR +GR RWPSTES+ KIL
Sbjct: 2 LSHERIWLAIDHLAQRHGLTPSGLARRAGLDATSFNRSKRIAPDGRKRWPSTESLAKILT 61
Query: 64 ATNETICQLLDL--PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
AT ++ L L P L +G P G W + P
Sbjct: 62 ATGASLDDFLQLVEPRPAPPPAILPLIGSAAL-----AAGRRIGPDGRPAGAGWEEMEFP 116
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ + +AI+ Q +LPLY GD+L++ + GDR L+ +
Sbjct: 117 DLGA--QSCFAIE-------VQGEGLLPLYHDGDVLVVCATAPARRGDRTLVCLDGEGLF 167
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
A L R R+ + PV TV + I W+AR++W
Sbjct: 168 AADLRRRTVRTTEFAGRTPGEPVRTVPTARIAWMARVMW 206
>gi|114569067|ref|YP_755747.1| putative phage repressor [Maricaulis maris MCS10]
gi|114339529|gb|ABI64809.1| putative phage repressor [Maricaulis maris MCS10]
Length = 208
Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 17/222 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKIL 62
+H IW IDR+A +PSGLAR+AGLD T+FN SKR +G + RWPSTESI K L
Sbjct: 2 LTHDDIWRGIDRLARHAQTSPSGLARRAGLDSTTFNPSKRISADGTKPRWPSTESIAKAL 61
Query: 63 AATNETICQLLDLP-FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
AA + LD F+ + + + +P FD+ +P G W+ + P
Sbjct: 62 AAAH------LDFDDFAGLISGQPRTGALPSRALADGEEQDPFDATGYPAGPDWDAIPFP 115
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ +P +A+ QDT MLP+YR GD L+++ GDR++++ R G
Sbjct: 116 GL-APGEA-FALTVQDTH-------MLPVYRPGDRLVVSHEAPTRVGDRVVVQRRDGSRS 166
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
A L + +++ L L+ P T+ ++ + W+ARI+W SQ
Sbjct: 167 AWTLSEKTVQALRLAPLDPLQPALTLPLTQVAWLARIVWVSQ 208
>gi|254471620|ref|ZP_05085021.1| dna-binding protein rdga [Pseudovibrio sp. JE062]
gi|211958822|gb|EEA94021.1| dna-binding protein rdga [Pseudovibrio sp. JE062]
Length = 214
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 113/234 (48%), Gaps = 39/234 (16%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
H+ +W A+D+MA+RH LTPSGLAR+AGLDPTSFN SKRF +GR RWPSTES+ K+L T
Sbjct: 4 HENLWAALDKMAKRHQLTPSGLARRAGLDPTSFNPSKRFAADGRPRWPSTESLAKVLEVT 63
Query: 66 NETICQLLDL-------------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
T L F T + +E+ L F DS +FP+
Sbjct: 64 QMTFVDFAGLLQDKTEISGTHFRSFPAYLCTSDELREVDLEDLSGFQLDKFCDSFIFPS- 122
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
S +A++ S P YR+G ILI++ + D +L
Sbjct: 123 ------------SQSEKFFALE-------VSSNSFEPYYREGQILIVSPESSLRRNDHVL 163
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT---VEMSDIEWIARILWASQ 223
I +TGD+ L + I+ P DT V+++D+ W ARILW SQ
Sbjct: 164 IATKTGDLHCGPLQRQTNERIEFRRHT---PDDTPRVVQVADLVWTARILWVSQ 214
>gi|114328547|ref|YP_745704.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1]
gi|114316721|gb|ABI62781.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1]
Length = 221
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 112/231 (48%), Gaps = 21/231 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H+ IW AID +A L+ SGLAR+AGLD T+FN SKR +GR RWPSTESI KIL
Sbjct: 1 MKHEDIWRAIDTLAAIKGLSTSGLARRAGLDATTFNLSKRQMPDGRQRWPSTESISKILV 60
Query: 64 ATNETICQLLDLP------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT E++ L +D + IPL P D + GN
Sbjct: 61 ATGESLGAFTSLVNGAETLSADSGQNTHYGRRIPLFSLPE-----LRDLPIKGEGN---- 111
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+P R + + + DTS+ PL+R+G ILI++ + GDR++++
Sbjct: 112 -ALPSARDETSLPDVADREAYGIEIHDTSLAPLFREGTILIVSPNAPLRRGDRVIVRLAA 170
Query: 178 GD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
D V R R +D+ SLN ++ ++ + WI RI+WASQ
Sbjct: 171 HDGEPSETVFGHFHRRSARWMDISSLNGDKAERSISLTSLVWIHRIVWASQ 221
>gi|330992988|ref|ZP_08316928.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1]
gi|329759941|gb|EGG76445.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1]
Length = 223
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH IW AIDR+A LTPSGLAR AGLD T+FN SKR GR RWP TES+ + L+
Sbjct: 2 ISHDDIWRAIDRLAAERGLTPSGLARAAGLDSTTFNPSKRITPSGRPRWPGTESLARTLS 61
Query: 64 ATN---ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
AT E +LL T + + F FD P G +W
Sbjct: 62 ATGISFEGFSRLLSGHHDPETTNRAHHSHLKIAPFSQLAHPELFDETGLPEGERWEKWEF 121
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
+ H+ YA+ H DT M P++RKG L+++ + DR+L+ G
Sbjct: 122 HGMADHHS--YAV------HVDCDT-MEPIFRKGGTLVVSPTAAIRVHDRVLLHTPQGTA 172
Query: 181 VAKVLISR 188
++ R
Sbjct: 173 CCGMVTER 180
>gi|162145992|ref|YP_001600450.1| hypothetical protein GDI_0160 [Gluconacetobacter diazotrophicus PAl
5]
gi|209544371|ref|YP_002276600.1| hypothetical protein Gdia_2230 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161784566|emb|CAP54103.1| conseved protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209532048|gb|ACI51985.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 217
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 95/192 (49%), Gaps = 20/192 (10%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
H +W+A+D +A LTPSGLAR AGLD TSFN SKR GR RWP TES+ ++L AT
Sbjct: 4 HDDLWQALDNLAAERGLTPSGLARAAGLDSTSFNPSKRVTPAGRPRWPGTESLARVLDAT 63
Query: 66 N---ETICQLL---DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
E+ +L+ LP + + + L + GG FD+ P G W +
Sbjct: 64 GLTLESFGRLMAGQALPRASRAAGRSRLRLSALSHLE---QGGMFDAAGLPVGRHWESWD 120
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
VP + +YA+ DT P++R G L+++SA + DR+++
Sbjct: 121 VPGLGDAE--LYAVMV--------DTDAFEPVFRAGAFLVVSSAAAIRRQDRVILHRADA 170
Query: 179 DIVAKVLISRRG 190
+ A VL R G
Sbjct: 171 TLCAVVLDPRPG 182
>gi|296114602|ref|ZP_06833255.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC
23769]
gi|295978958|gb|EFG85683.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC
23769]
Length = 221
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH+ IW A+D +A +TPSGLAR AGLD T+FN SKR GR RWP TES+ + L+
Sbjct: 2 ISHEDIWRALDLLATERGMTPSGLARAAGLDSTTFNPSKRMTSSGRPRWPGTESLARTLS 61
Query: 64 ATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT ++ L G R + ++ F G FD P+G++W T
Sbjct: 62 ATGISLEGFGRLMTGHGDRLGGTHHAHLMIVPFSELGQAELFDESGLPSGDRWETWDFHG 121
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ H+ YA+ +M P++R G +L+++ + DR+L+
Sbjct: 122 LADHHS--YAVL-------VDSDNMEPIFRAGTVLVVSPTAAIRQHDRVLLH 164
>gi|294853434|ref|ZP_06794106.1| peptidase family S24 [Brucella sp. NVSL 07-0026]
gi|294819089|gb|EFG36089.1| peptidase family S24 [Brucella sp. NVSL 07-0026]
Length = 160
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 86/155 (55%), Gaps = 10/155 (6%)
Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
I + LP G T+ IPLL +G+GG+FD FP G W+ V P
Sbjct: 16 IAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTG--E 72
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
G+YA++ SMLPLYR GD LI+ V GDR++++ R G+++AK+L +
Sbjct: 73 GVYALEVSGE-------SMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQ 125
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 126 TPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 160
>gi|261318541|ref|ZP_05957738.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|265986342|ref|ZP_06098899.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|261297764|gb|EEY01261.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|264658539|gb|EEZ28800.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
Length = 170
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 86/155 (55%), Gaps = 10/155 (6%)
Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
I + LP G T+ IPLL +G+GG+FD FP G W+ V P
Sbjct: 26 IAGVDSLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTG--E 82
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
G+YA++ SMLPLYR GD LI+ V GDR++++ R G+++AK+L +
Sbjct: 83 GVYALEVSGE-------SMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQ 135
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 136 TPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 170
>gi|254710961|ref|ZP_05172772.1| Peptidase family S24 [Brucella pinnipedialis B2/94]
gi|256029343|ref|ZP_05442957.1| Peptidase family S24 [Brucella pinnipedialis M292/94/1]
Length = 142
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
LP G T+ IPLL +G+GG+FD FP G W+ V P G+YA++
Sbjct: 4 LPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTG--EGVYALE 60
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+I+
Sbjct: 61 VSGE-------SMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIE 113
Query: 195 LMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L SLN +P E DIEWIARILWASQ
Sbjct: 114 LHSLNPEHPNRIFESKDIEWIARILWASQ 142
>gi|260567943|ref|ZP_05838412.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260154608|gb|EEW89689.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
Length = 132
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
IPLL +G+GG+FD FP G W+ V P G+YA++ SMLP
Sbjct: 8 IPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTG--EGVYALEVSGE-------SMLP 58
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
LYR GD LI+ V GDR++++ R G+++AK+L + R+I+L SLN +P E
Sbjct: 59 LYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHSLNPEHPNRIFES 118
Query: 210 SDIEWIARILWASQ 223
DIEWIARILWASQ
Sbjct: 119 KDIEWIARILWASQ 132
>gi|329115279|ref|ZP_08244034.1| Phage Repressor [Acetobacter pomorum DM001]
gi|326695722|gb|EGE47408.1| Phage Repressor [Acetobacter pomorum DM001]
Length = 214
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
++IW A+D +A+ LTPSGLAR AGLD T+FN S+R G RWP+ S+ + L
Sbjct: 5 ERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGHGVWRWPALPSLLRALDVLR 64
Query: 67 ETICQ----LLDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
++ Q L DG T + +PL + GG D P G W
Sbjct: 65 VSLAQFEAHLWGYEQPDGAKTPAPCFMRSLPLSWL---DQGGVLDRAGLPAGGLWEQ--- 118
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT-SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
+++ + DT M P+ R G L++ A+ DR+++
Sbjct: 119 ------EETFFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALHPRGADRVVLIRAGQA 172
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
V +L + R+I + PV W+ RI+
Sbjct: 173 PVVGILQEKPVRAIQPFGRSALQPVPAAAAG--VWLHRIV 210
>gi|258541731|ref|YP_003187164.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256632809|dbj|BAH98784.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256635866|dbj|BAI01835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
gi|256638921|dbj|BAI04883.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
gi|256641975|dbj|BAI07930.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
gi|256645030|dbj|BAI10978.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
gi|256648085|dbj|BAI14026.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
gi|256651138|dbj|BAI17072.1| transcriptional regulator [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654129|dbj|BAI20056.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
Length = 214
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 23/221 (10%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
++IW A+D +A+ LTPSGLAR AGLD T+FN S+R +G RWP+ S+ + L
Sbjct: 5 ERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGQGVWRWPALPSLLRALDVLR 64
Query: 67 ETICQL------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
++ Q + P + +PL + G D P G W
Sbjct: 65 VSLAQFEGHIWGYEQPDGVEAPAPCFMRSLPLSWL---KQEGVLDRAGLPAGGLWEQ--- 118
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT-SMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTG 178
+++ + DT M P+ R G L++ A+ DR +LI+P
Sbjct: 119 ------EETFFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALYPRGADRVVLIRPGQA 172
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+V +L + +I + PV + + W+ RI+
Sbjct: 173 PVVG-ILQEKPVLAIQPFGRSALQPVP--QAAAGVWLHRIV 210
>gi|218460494|ref|ZP_03500585.1| putative phage-related transcriptional regulator protein
[Rhizobium etli Kim 5]
Length = 36
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF 38
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSF
Sbjct: 2 LSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSF 36
>gi|329889506|ref|ZP_08267849.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC
11568]
gi|328844807|gb|EGF94371.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC
11568]
Length = 152
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
+ IPLL +G GFFD P W+ +P + + ++++ SM
Sbjct: 26 RAIPLLGLARAGDEGFFDDAGLPMAEGWDQTELPAHK---DSLFSL-------TIDGDSM 75
Query: 148 LPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
P+YR GD +I++ A +V GDR++++ G+ +AK + + GR + L S+N Y
Sbjct: 76 EPVYRPGDRVIVDLDATEVRRGDRVVVRTAEGETLAKEIAALNGREVVLASVNPHYEPRI 135
Query: 207 VEMSDIEWIARILWASQ 223
+ I W+ARILW SQ
Sbjct: 136 LPRGQIRWMARILWVSQ 152
>gi|296160137|ref|ZP_06842956.1| putative phage repressor [Burkholderia sp. Ch1-1]
gi|295889611|gb|EFG69410.1| putative phage repressor [Burkholderia sp. Ch1-1]
Length = 222
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+PF G K IP+L G GF+ +P G+ + P GI +
Sbjct: 84 IPFPPG-------KRIPVLGMAQLGDNGFWAEVEYPVGHGEGYLDFPSRDRDAYGIRCV- 135
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SMLP + G+ +++ V GD +L+K + G ++ K+L+ +R
Sbjct: 136 ---------GDSMLPRIKDGEFVVIEPNHPVENGDEVLVKAKDGRVMIKILLYQRAGRTH 186
Query: 195 LMSLNCCYPVDTVEMSDIE---WIARILWAS 222
LMS+N + +E IE ++A I+ +S
Sbjct: 187 LMSVNTEHAPLAIETEKIERLHYVAAIVKSS 217
>gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1]
gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13]
gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40]
gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1]
Length = 228
Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 26 GLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKI----------LAATNETICQLLD 74
GL+++A + R G E R PS + I KI L A + Q L
Sbjct: 16 GLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVSFVDLVAFTDDNAQPLV 75
Query: 75 LPFSDGR---TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
+ D T + KE +P++ G+ G+FD+ FP G+ G I S Y
Sbjct: 76 VKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPGHGD---GYLNIHSDDPDAY 132
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ K SMLP + G+ +++ GD ++++ G + K I R
Sbjct: 133 GL-------KVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAGRTMIKEYIYLRDG 185
Query: 192 SIDLMSLNCCYP---VDTVEMSDIEWIARILWASQ 223
S+N +P + E+ +I + IL +S+
Sbjct: 186 MYRFDSVNAEHPPIHIAENEILEIHLVGGILKSSR 220
>gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 228
Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 26 GLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKI----------LAATNETICQLLD 74
GL+++A + R G E R PS + I KI L A + Q L
Sbjct: 16 GLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVSFVDLVAFTDDNAQPLV 75
Query: 75 LPFSDGR---TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
+ D T + KE +P++ G+ G+FD+ FP G+ G I S Y
Sbjct: 76 VKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPGHGD---GYLNIHSDDPDAY 132
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ K SMLP + G+ +++ GD ++++ G + K I R
Sbjct: 133 GL-------KVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAGRTMIKEYIYLRDG 185
Query: 192 SIDLMSLNCCYP---VDTVEMSDIEWIARILWASQ 223
S+N +P + E+ +I + IL +S+
Sbjct: 186 MYRFDSVNAEHPPIHIAENEILEIHLVGGILKSSR 220
>gi|299529267|ref|ZP_07042709.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44]
gi|298722745|gb|EFI63660.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44]
Length = 120
Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ + SM P YR G+ +++ +I+ G +++K G + K L RG I L+S+N
Sbjct: 32 RIKGDSMHPRYRAGEFVVVTPSIEAQPGRDVVVKLHDGKCLLKELNWIRGDEIQLLSINN 91
Query: 201 CYPVDTVEMSDIEWIARI 218
Y T+ D+E + R+
Sbjct: 92 GYAPMTISKEDVECVCRV 109
>gi|238762739|ref|ZP_04623708.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638]
gi|238699044|gb|EEP91792.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638]
Length = 240
Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 22/216 (10%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ + +H ++ S LA+ +G+ S+ ++R+ + G + P E + KI N +
Sbjct: 27 LNSLMSKHEISVSSLAKLSGV---SYEMARRYTL-GTAK-PRDEKMLKIADHLNVSPA-F 80
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
LD GR TE K + L S G + + FP + I P + IY
Sbjct: 81 LDYGTMTGRDTEADSKVVKLRQLEVFASAGHGYINNEFPAV-------ISSIEIPEDKIY 133
Query: 132 AI---QTQDTRH--KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ ++ D H SM+P D+L +++ I GD + + K L
Sbjct: 134 ELFGRKSLDGIHLMNVDGDSMMPTLHPRDLLFIDTKIDHFNGDGVYVFNFEDSTFVKRLQ 193
Query: 187 SRRGRSIDLMSLNCCYP---VDTVEMSDIEWIARIL 219
+GR + ++S N YP ++ EM+++ + +++
Sbjct: 194 KVKGRRLSVLSDNDKYPPFFIEANEMNELYFFGKLI 229
>gi|317054052|ref|YP_004118077.1| putative phage repressor [Pantoea sp. At-9b]
gi|316952047|gb|ADU71521.1| putative phage repressor [Pantoea sp. At-9b]
Length = 230
Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 35/226 (15%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+D + + NL+ + LAR AG+ P + N + G G+ +S KI AAT + +
Sbjct: 15 LDELLKAANLSKADLARIAGVSPQAVNNWFKRGEIGK------DSAIKISAATGLDLSWV 68
Query: 73 L---DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV----GVPEIRS 125
L D +S E E+ G +GV P K + V G+ ++
Sbjct: 69 LGESDQMYSTPHQKPASEVEVV----------GNIMNGVIPV--KGDAVLGMDGLIDMME 116
Query: 126 PHNG---IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
H G IY+ + + + SM P + G+ +++ +V+ GD + I+ G +
Sbjct: 117 FHAGWLRIYSDDREAYGVRVRGDSMWPRIQSGEFVVIEPNTKVHPGDEVFIRTSDGHNMI 176
Query: 183 KVLISRRGRSIDLMSLNCCY-----PVDTVEMSDIEWIARILWASQ 223
K+L R S+N + PV+ V+ I +++ I+ A++
Sbjct: 177 KILNYNRAGDYQFTSINNDHKPFTLPVNQVD--KIHFVSGIIKATR 220
>gi|186476666|ref|YP_001858136.1| putative phage repressor [Burkholderia phymatum STM815]
gi|184193125|gb|ACC71090.1| putative phage repressor [Burkholderia phymatum STM815]
Length = 331
Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ ++L +N GD +L+K + G ++ K + I L+S N +
Sbjct: 246 SMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRVMVKEFVYEAQGKIFLLSTNEAHGKI 305
Query: 206 TVEMSDIEWIARILWASQ 223
+VE ++IE + + W ++
Sbjct: 306 SVERANIEHMHYVGWIAK 323
>gi|212499706|ref|YP_002308514.1| cI [Bacteriophage APSE-2]
gi|211731675|gb|ACJ10163.1| cI [Bacteriophage APSE-2]
Length = 232
Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ Q SM+P + G+ +++ + GD +L++ G ++ K + +R + L+S+N
Sbjct: 143 RCQGESMMPRIQHGEFVVMEPNHKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINS 202
Query: 201 CYPVDTVEMSDIEWIARI 218
+P + S IE I +
Sbjct: 203 NHPPIRLAASTIEKIIYV 220
>gi|284007338|emb|CBA72703.1| phage transcriptional regulator [Arsenophonus nasoniae]
Length = 232
Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ Q SM+P + G+ +++ + GD +L++ G ++ K + +R I L+S+N
Sbjct: 143 RCQGESMMPRIQHGEFVVMEPNYKYKPGDEVLVQDDNGQVMVKTFLYQRDDVIHLLSINA 202
Query: 201 CYP 203
+P
Sbjct: 203 DHP 205
>gi|85374557|ref|YP_458619.1| putative transcriptional regulator, repressor [Erythrobacter
litoralis HTCC2594]
gi|84787640|gb|ABC63822.1| putative transcriptional regulator, repressor [Erythrobacter
litoralis HTCC2594]
Length = 220
Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 142 TQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLN 199
+ SM PL R GD IL+ S + G ++ R G+ + +SR G+ I L+S N
Sbjct: 138 VEGDSMEPLLRDGDEILVDRSPGPLRDGIHVV---RLGETLMVKRLSRSGQGRISLLSQN 194
Query: 200 CCYPVDTVEMSDIEWIARILWAS 222
YP + + D+E I R++W S
Sbjct: 195 LAYPPLDMALEDVEVIGRVVWKS 217
>gi|171911475|ref|ZP_02926945.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136]
Length = 261
Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 127 HNGIYAIQTQDTRH---KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK---PRTGDI 180
H + A T D++ + + SM P Y +GDIL ++ GD +L K GD+
Sbjct: 155 HESVIAFGTTDSKAFATRLRGDSMEPKYSEGDILYVSPNATPKNGDIVLAKVDEAHGGDV 214
Query: 181 VAKVLISRR-GRSIDLMSLNCCYP 203
+ K+ SR G++I L S N YP
Sbjct: 215 MCKLYSSRDGGKNIVLSSYNAAYP 238
>gi|255606333|ref|XP_002538548.1| conserved hypothetical protein [Ricinus communis]
gi|223511638|gb|EEF23835.1| conserved hypothetical protein [Ricinus communis]
Length = 331
Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
K + SM P + G+ ++L + GD +LIK + G ++ K + I L+S N
Sbjct: 241 KCKGDSMKPRIKDGEYVVLEPNQPIAPGDEVLIKAKDGRVMVKEFVYEAQGKIYLLSTNE 300
Query: 201 CYPVDTVEMSDIEWIARILWASQ 223
+ +VE ++IE + + W ++
Sbjct: 301 AHGKISVERANIEHMHYVGWIAK 323
>gi|114567914|ref|YP_755068.1| transcription termination factor Rho [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338849|gb|ABI69697.1| transcription termination factor Rho [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 425
Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + +++ RMA HNL PSG G+DP S +K KRF RN
Sbjct: 250 EHKKDVVILMDSVTRMARAHNLVVPPSGRTLSGGIDPASLDKPKRFFGAARN 301
>gi|253999361|ref|YP_003051424.1| putative phage repressor [Methylovorus sp. SIP3-4]
gi|253986040|gb|ACT50897.1| putative phage repressor [Methylovorus sp. SIP3-4]
Length = 226
Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ + SM P Y G+ ++ D +LIK TG+++ K LISRRG I L S N
Sbjct: 138 RVEGNSMFPKYAHGEYALVEPNTVPEIEDDVLIKLSTGEVMLKRLISRRG-GIHLSSYNE 196
Query: 201 CYPVDTVEMSDIEWIARI 218
D + S+I W+ +
Sbjct: 197 SGTYD-FQDSEIVWMYYV 213
>gi|296282441|ref|ZP_06860439.1| putative transcriptional regulator, repressor [Citromicrobium
bathyomarinum JL354]
Length = 231
Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLISRRGRSIDLMSLNC 200
+ SM PL R GD ++++ + ++ R GD ++ K L S I L+S N
Sbjct: 149 VEGDSMEPLLRHGDEILIDRGSRFERDGVHVV--RMGDTLMVKRLASAGAGRIALLSQNL 206
Query: 201 CYPVDTVEMSDIEWIARILWAS 222
YP V + +IE + R++W S
Sbjct: 207 AYPPVEVGLDEIEVLGRVVWKS 228
>gi|238898738|ref|YP_002924420.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466498|gb|ACQ68272.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 260
Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ Q SM+P + G+ +++ + GD +L++ G ++ K + +R + L+S+N
Sbjct: 171 RCQGESMMPRIQHGEFVVMEPNHKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINS 230
Query: 201 CYPVDTVEMSDIEWIARI 218
+P + S IE I +
Sbjct: 231 NHPPIRLAASTIEKIIYV 248
>gi|218463233|ref|ZP_03503324.1| putative phage-related transcriptional regulator protein [Rhizobium
etli Kim 5]
Length = 30
Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 196 MSLNCCYPVDTVEMSDIEWIARILWASQ 223
MSLN + T+++SD+EWIARI+WASQ
Sbjct: 3 MSLNPEHANRTLDLSDVEWIARIIWASQ 30
>gi|9633604|ref|NP_050962.1| P1 [Acyrthosiphon pisum bacteriophage APSE-1]
gi|6118052|gb|AAF04000.1|AF157835_57 P1 [Endosymbiont phage APSE-1]
Length = 260
Score = 39.3 bits (90), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ Q SM+P + G+ +++ + GD +L++ G ++ K + +R + L+S+N
Sbjct: 171 RCQGESMMPRIQHGEFVVMEPNYKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINS 230
Query: 201 CYPVDTVEMSDIEWIARI 218
+P + + IE I +
Sbjct: 231 NHPPIRLAVPTIEKIIYV 248
>gi|26989752|ref|NP_745177.1| transcriptional repressor pyocin R2_PP [Pseudomonas putida KT2440]
gi|24984646|gb|AAN68641.1|AE016494_1 pyocin R2_PP, transcriptional repressor, CI/C2 family [Pseudomonas
putida KT2440]
Length = 243
Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 151 YRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYP-VDTVE 208
Y G I+ ++ ++ N GDR++ + PRT ++ KVL+S GR L +N YP +D E
Sbjct: 170 YPTGCIIFVDPEVEANTGDRVIARVPRTNEVTFKVLVSDAGRQF-LRPINPQYPIIDITE 228
Query: 209 MSDI 212
+ I
Sbjct: 229 ETHI 232
>gi|260845233|ref|YP_003223011.1| putative phage repressor [Escherichia coli O103:H2 str. 12009]
gi|257760380|dbj|BAI31877.1| predicted phage repressor [Escherichia coli O103:H2 str. 12009]
gi|309702933|emb|CBJ02264.1| putative phage protein [Escherichia coli ETEC H10407]
Length = 224
Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM+P ++G+ +I+ GD +L+ R G+++ K + R LMS+N +P
Sbjct: 141 SMMPRIKEGEFVIVEPNHDYTPGDEVLVVTREGEVMVKTFLFERDGLFHLMSVNEDHPPV 200
Query: 206 TVEMSDIEWIARI 218
V +IE I +
Sbjct: 201 RVPRENIEKIHYV 213
>gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2]
Length = 183
Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M+S ++I AI R R +L+ S +AR+AG+ KS G+E PS E+++
Sbjct: 1 MSSQPREQIAAAIKRERLRADLSLSEVARRAGI-----GKSTMSGLEAGTGNPSVETMWA 55
Query: 61 ILAATNETICQLLDLP 76
+ AA + + +LLD P
Sbjct: 56 LAAALDIPLARLLDPP 71
>gi|218555126|ref|YP_002388039.1| putative repressor CI from bacteriophage origin [Escherichia coli
IAI1]
gi|218361894|emb|CAQ99494.1| putative repressor CI from bacteriophage origin [Escherichia coli
IAI1]
Length = 224
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM+P ++G+ +I+ GD +L+ R G+++ K + R LMS+N +P
Sbjct: 141 SMMPRIKEGEFVIVEPNHDYTPGDEVLVVTRDGEVMVKTFLFERDGLFHLMSVNEDHPPV 200
Query: 206 TVEMSDIEWIARI 218
V +IE I +
Sbjct: 201 RVPRENIEKIHYV 213
>gi|297618452|ref|YP_003703611.1| transcription termination factor Rho [Syntrophothermus lipocalidus
DSM 12680]
gi|297146289|gb|ADI03046.1| transcription termination factor Rho [Syntrophothermus lipocalidus
DSM 12680]
Length = 418
Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRF 44
+ +++ R+A HNL PSG GLDP S NK KRF
Sbjct: 258 LLDSLTRLARAHNLVIPPSGRTLSGGLDPASLNKPKRF 295
>gi|160898658|ref|YP_001564240.1| putative phage repressor [Delftia acidovorans SPH-1]
gi|160364242|gb|ABX35855.1| putative phage repressor [Delftia acidovorans SPH-1]
Length = 236
Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEIRSPHNGIY 131
D P G +K K IP++ G GF++ S + G+ G E S Y
Sbjct: 92 DAPAFAGYPKHQKSK-IPVVGTAKMGDDGFYEEFSAIPGAGD-----GYVEHYSDDKSAY 145
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ + + SM P R G +I+ + G+ +LIK G + K + RR
Sbjct: 146 CL-------RVKGMSMFPAIRDGWYVIVEPNSNPSEGEYVLIKKSDGRRMVKEFLFRRSG 198
Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARI 218
SI+LMS+N + T+EM +I+ I I
Sbjct: 199 SIELMSVNGGARL-TLEMHEIQDIQPI 224
>gi|83591218|ref|YP_431227.1| transcription termination factor Rho [Moorella thermoacetica ATCC
39073]
gi|83574132|gb|ABC20684.1| transcription termination factor Rho [Moorella thermoacetica ATCC
39073]
Length = 429
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A HNL PSG G+DPT+ K KRF RN
Sbjct: 260 EHKKDVVVLLDSITRLARAHNLVVPPSGRTLSGGVDPTALYKPKRFFGAARN 311
>gi|87119745|ref|ZP_01075642.1| ATP-dependent Clp protease ATP-binding subunit [Marinomonas sp.
MED121]
gi|86165221|gb|EAQ66489.1| ATP-dependent Clp protease ATP-binding subunit [Marinomonas sp.
MED121]
Length = 872
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 67 ETICQLLDLPFSDG-------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWN 116
ET L D F G T K+E +I +L P+G GF + GV N ++
Sbjct: 619 ETAMALADQVFGGGDNLTVINMTEFKEEHKISMLLGSPAGYVGFGEGGVLTEAIRRNPYS 678
Query: 117 TVGVPEIRSPHNGIYAI--QTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNCG--DR 170
+ + E+ H G++ + Q D H +D+ + K I+I+ N+A Q C D
Sbjct: 679 VLLLDEMEKAHPGVHDLFYQIFDKGH-IKDSEGRNVDFKNTIIIMTSNAADQAICDICDE 737
Query: 171 LLIKPRTGDIVAKVLISRRG----RSIDLMSLNCCYPVDTVEMSDIEWIA 216
+P T D+V ++ +G + ++ YP++T E++ I I+
Sbjct: 738 QEERPSTTDLVEQIRPDLQGFFKPAFLGRATIVPYYPLNTEELTKIAEIS 787
>gi|85058275|ref|YP_453977.1| hypothetical protein SG0297 [Sodalis glossinidius str. 'morsitans']
gi|84778795|dbj|BAE73572.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
Length = 232
Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
++P+L G GG++D + G V P + +A+ K Q SM+
Sbjct: 101 KVPMLGTAQLGGGGYWDLQEYAVGQGDGYVLWP---TKDKDAFAL-------KCQGDSMM 150
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP---VD 205
P + G+ +++ GD +L++ G+++ K+ + ++ ++L+S+N + +D
Sbjct: 151 PRIQHGEFVVVEPNRGYKPGDEVLVQDEQGEVMIKIFLFQKDGIVNLLSVNSKHAPTRLD 210
Query: 206 TVEMSDIEWIARILWAS 222
+ + ++A I+ S
Sbjct: 211 AHTIKKMFYVAGIVKDS 227
>gi|110633546|ref|YP_673754.1| putative phage repressor [Mesorhizobium sp. BNC1]
gi|110284530|gb|ABG62589.1| putative phage repressor [Chelativorans sp. BNC1]
Length = 230
Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
+ I E ID LT S A+ AGL ++ +R G+ + LA
Sbjct: 3 RDILERIDERLAEVGLTESRAAKMAGLSDSAIRDMRRAVKSGKEDAGVSTRTLAKLAPVL 62
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG--VFPTGNKWNTVGVPEIR 124
+T + L +G + + +P++ G+ +G V P + G+ ++
Sbjct: 63 QTSAEWLLTGGPEG----IRSRTVPIM--------GYLGAGAEVEPEYEQVPPEGLDQVD 110
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDI 180
P +++ + K + SMLP+Y+ G ++I+ S + G+ ++ G
Sbjct: 111 VP----FSVPDEMIAFKVRGDSMLPVYKDGAVIIVYSEQKKPLHSFYGEEAAVRTSDGRR 166
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
K ++ +++L+S N P++ V + EWI I
Sbjct: 167 FIKTIMRGPDDTVNLLSHNAS-PIEGVRL---EWIGEIF 201
>gi|34556743|ref|NP_906558.1| hypothetical protein WS0307 [Wolinella succinogenes DSM 1740]
gi|34482457|emb|CAE09458.1| hypothetical protein WS0307 [Wolinella succinogenes]
Length = 218
Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 146 SMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
SM P GD++ ++ Q++ G +I+ G I K L R +D++S N YP
Sbjct: 138 SMEPTLEDGDLIFIHRQKRQISKGGIFVIQTPHG-IFVKRLQERLDGGVDILSDNSLYPT 196
Query: 205 DTVEMSDIEWIARILWA 221
T+E IE I R++ A
Sbjct: 197 QTLERDGIEVIGRVVGA 213
>gi|229051002|ref|ZP_04194551.1| Transcription termination factor Rho [Bacillus cereus AH676]
gi|228722379|gb|EEL73775.1| Transcription termination factor Rho [Bacillus cereus AH676]
Length = 292
Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 118 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 173
>gi|147679170|ref|YP_001213385.1| transcription termination factor Rho [Pelotomaculum
thermopropionicum SI]
gi|146275267|dbj|BAF61016.1| transcription termination factor [Pelotomaculum thermopropionicum
SI]
Length = 434
Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
+ ++I R+A HNL PSG G+DP + +K KRF RN S+ + A
Sbjct: 258 LLDSITRLARAHNLVVPPSGRTLSGGVDPAALHKPKRFFGAARN-LEEGGSLTILATALI 316
Query: 67 ETICQLLDLPFSDGRTTEKKE 87
ET ++ D+ F + + T E
Sbjct: 317 ETGSRMDDVIFEEFKGTGNME 337
>gi|254724688|ref|ZP_05186471.1| transcription termination factor Rho [Bacillus anthracis str.
A1055]
Length = 375
Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|253577370|ref|ZP_04854687.1| transcription termination factor Rho [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843270|gb|EES71301.1| transcription termination factor Rho [Paenibacillus sp. oral taxon
786 str. D14]
Length = 454
Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 252 EHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGSARN 303
>gi|295707232|ref|YP_003600307.1| transcription termination factor Rho [Bacillus megaterium DSM 319]
gi|294804891|gb|ADF41957.1| transcription termination factor Rho [Bacillus megaterium DSM 319]
Length = 424
Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|134301005|ref|YP_001114501.1| transcription termination factor Rho [Desulfotomaculum reducens
MI-1]
gi|134053705|gb|ABO51676.1| transcription termination factor Rho [Desulfotomaculum reducens
MI-1]
Length = 450
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
+ ++I R+A HNL PSG G+DP + +K KRF RN S+ + A
Sbjct: 266 LLDSITRLARAHNLVIPPSGRTLSGGVDPAALHKPKRFFGAARN-MEEGGSLTILATALI 324
Query: 67 ETICQLLDLPFSDGRTT 83
ET ++ D+ F + + T
Sbjct: 325 ETGSRMDDVIFEEFKGT 341
>gi|228968461|ref|ZP_04129450.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228791241|gb|EEM38854.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 419
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|229087824|ref|ZP_04219939.1| Transcription termination factor Rho [Bacillus cereus Rock3-44]
gi|228695485|gb|EEL48355.1| Transcription termination factor Rho [Bacillus cereus Rock3-44]
Length = 423
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|228988559|ref|ZP_04148646.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229158893|ref|ZP_04286950.1| Transcription termination factor Rho [Bacillus cereus ATCC 4342]
gi|228624504|gb|EEK81274.1| Transcription termination factor Rho [Bacillus cereus ATCC 4342]
gi|228771176|gb|EEM19655.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 423
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|294501884|ref|YP_003565584.1| transcription termination factor Rho [Bacillus megaterium QM B1551]
gi|51704740|gb|AAU09403.1| putative transcription termination factor Rho [Bacillus megaterium]
gi|294351821|gb|ADE72150.1| transcription termination factor Rho [Bacillus megaterium QM B1551]
Length = 424
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|47569757|ref|ZP_00240429.1| transcription termination factor Rho [Bacillus cereus G9241]
gi|47553553|gb|EAL11932.1| transcription termination factor Rho [Bacillus cereus G9241]
Length = 404
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|49480416|ref|YP_039325.1| transcription termination factor Rho [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52140230|ref|YP_086601.1| transcription termination factor Rho [Bacillus cereus E33L]
gi|118480366|ref|YP_897517.1| transcription termination factor Rho [Bacillus thuringiensis str.
Al Hakam]
gi|196036945|ref|ZP_03104325.1| transcription termination factor Rho [Bacillus cereus W]
gi|196041031|ref|ZP_03108328.1| transcription termination factor Rho [Bacillus cereus NVH0597-99]
gi|218906510|ref|YP_002454344.1| transcription termination factor Rho [Bacillus cereus AH820]
gi|225867313|ref|YP_002752691.1| transcription termination factor Rho [Bacillus cereus 03BB102]
gi|228917941|ref|ZP_04081477.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228930341|ref|ZP_04093345.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228936617|ref|ZP_04099411.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228949053|ref|ZP_04111325.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229094444|ref|ZP_04225516.1| Transcription termination factor Rho [Bacillus cereus Rock3-42]
gi|229124836|ref|ZP_04254014.1| Transcription termination factor Rho [Bacillus cereus 95/8201]
gi|229187557|ref|ZP_04314697.1| Transcription termination factor Rho [Bacillus cereus BGSC 6E1]
gi|300117846|ref|ZP_07055613.1| transcription termination factor Rho [Bacillus cereus SJ1]
gi|301056800|ref|YP_003795011.1| transcription termination factor Rho [Bacillus anthracis CI]
gi|49331972|gb|AAT62618.1| transcription termination factor Rho [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51973699|gb|AAU15249.1| transcription termination factor Rho [Bacillus cereus E33L]
gi|118419591|gb|ABK88010.1| transcription termination factor Rho [Bacillus thuringiensis str.
Al Hakam]
gi|195990447|gb|EDX54435.1| transcription termination factor Rho [Bacillus cereus W]
gi|196028199|gb|EDX66809.1| transcription termination factor Rho [Bacillus cereus NVH0597-99]
gi|218536658|gb|ACK89056.1| transcription termination factor Rho [Bacillus cereus AH820]
gi|225788441|gb|ACO28658.1| transcription termination factor Rho [Bacillus cereus 03BB102]
gi|228595924|gb|EEK53604.1| Transcription termination factor Rho [Bacillus cereus BGSC 6E1]
gi|228658627|gb|EEL14289.1| Transcription termination factor Rho [Bacillus cereus 95/8201]
gi|228688981|gb|EEL42808.1| Transcription termination factor Rho [Bacillus cereus Rock3-42]
gi|228810626|gb|EEM56975.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823052|gb|EEM68890.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228829327|gb|EEM74960.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228841738|gb|EEM86849.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|298724710|gb|EFI65385.1| transcription termination factor Rho [Bacillus cereus SJ1]
gi|300378969|gb|ADK07873.1| transcription termination factor Rho [Bacillus cereus biovar
anthracis str. CI]
Length = 423
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|42784505|ref|NP_981752.1| transcription termination factor Rho [Bacillus cereus ATCC 10987]
gi|217962821|ref|YP_002341399.1| transcription termination factor Rho [Bacillus cereus AH187]
gi|222098803|ref|YP_002532861.1| transcription termination factor rho [Bacillus cereus Q1]
gi|229033965|ref|ZP_04188918.1| Transcription termination factor Rho [Bacillus cereus AH1271]
gi|229076546|ref|ZP_04209506.1| Transcription termination factor Rho [Bacillus cereus Rock4-18]
gi|229099765|ref|ZP_04230690.1| Transcription termination factor Rho [Bacillus cereus Rock3-29]
gi|229105924|ref|ZP_04236548.1| Transcription termination factor Rho [Bacillus cereus Rock3-28]
gi|229118827|ref|ZP_04248176.1| Transcription termination factor Rho [Bacillus cereus Rock1-3]
gi|229142075|ref|ZP_04270600.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST26]
gi|229176008|ref|ZP_04303503.1| Transcription termination factor Rho [Bacillus cereus MM3]
gi|229199457|ref|ZP_04326120.1| Transcription termination factor Rho [Bacillus cereus m1293]
gi|42740437|gb|AAS44360.1| transcription termination factor Rho [Bacillus cereus ATCC 10987]
gi|217063665|gb|ACJ77915.1| transcription termination factor Rho [Bacillus cereus AH187]
gi|221242862|gb|ACM15572.1| transcription termination factor Rho [Bacillus cereus Q1]
gi|228584033|gb|EEK42188.1| Transcription termination factor Rho [Bacillus cereus m1293]
gi|228607440|gb|EEK64767.1| Transcription termination factor Rho [Bacillus cereus MM3]
gi|228641364|gb|EEK97670.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST26]
gi|228664628|gb|EEL20121.1| Transcription termination factor Rho [Bacillus cereus Rock1-3]
gi|228677498|gb|EEL31751.1| Transcription termination factor Rho [Bacillus cereus Rock3-28]
gi|228683654|gb|EEL37607.1| Transcription termination factor Rho [Bacillus cereus Rock3-29]
gi|228706579|gb|EEL58792.1| Transcription termination factor Rho [Bacillus cereus Rock4-18]
gi|228728340|gb|EEL79363.1| Transcription termination factor Rho [Bacillus cereus AH1271]
gi|324329281|gb|ADY24541.1| transcription termination factor Rho [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 423
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|30023363|ref|NP_834994.1| transcription termination factor Rho [Bacillus cereus ATCC 14579]
gi|75764015|ref|ZP_00743630.1| Transcription termination factor rho [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|206970466|ref|ZP_03231419.1| transcription termination factor Rho [Bacillus cereus AH1134]
gi|218232465|ref|YP_002370109.1| transcription termination factor Rho [Bacillus cereus B4264]
gi|218900458|ref|YP_002448869.1| transcription termination factor Rho [Bacillus cereus G9842]
gi|228903807|ref|ZP_04067923.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
4222]
gi|228911171|ref|ZP_04074977.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
200]
gi|228924068|ref|ZP_04087344.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228942479|ref|ZP_04105016.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228955580|ref|ZP_04117581.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228961596|ref|ZP_04123205.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228975411|ref|ZP_04135967.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228982048|ref|ZP_04142341.1| Transcription termination factor Rho [Bacillus thuringiensis Bt407]
gi|229072799|ref|ZP_04205998.1| Transcription termination factor Rho [Bacillus cereus F65185]
gi|229082546|ref|ZP_04215009.1| Transcription termination factor Rho [Bacillus cereus Rock4-2]
gi|229112745|ref|ZP_04242278.1| Transcription termination factor Rho [Bacillus cereus Rock1-15]
gi|229130581|ref|ZP_04259537.1| Transcription termination factor Rho [Bacillus cereus BDRD-Cer4]
gi|229147872|ref|ZP_04276213.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST24]
gi|229153495|ref|ZP_04281673.1| Transcription termination factor Rho [Bacillus cereus m1550]
gi|229181581|ref|ZP_04308906.1| Transcription termination factor Rho [Bacillus cereus 172560W]
gi|229193584|ref|ZP_04320528.1| Transcription termination factor Rho [Bacillus cereus ATCC 10876]
gi|296505756|ref|YP_003667456.1| transcription termination factor Rho [Bacillus thuringiensis
BMB171]
gi|29898924|gb|AAP12195.1| Transcription termination factor rho [Bacillus cereus ATCC 14579]
gi|74488496|gb|EAO52097.1| Transcription termination factor rho [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|206735043|gb|EDZ52212.1| transcription termination factor Rho [Bacillus cereus AH1134]
gi|218160422|gb|ACK60414.1| transcription termination factor Rho [Bacillus cereus B4264]
gi|218543153|gb|ACK95547.1| transcription termination factor Rho [Bacillus cereus G9842]
gi|228589889|gb|EEK47764.1| Transcription termination factor Rho [Bacillus cereus ATCC 10876]
gi|228601777|gb|EEK59273.1| Transcription termination factor Rho [Bacillus cereus 172560W]
gi|228630099|gb|EEK86750.1| Transcription termination factor Rho [Bacillus cereus m1550]
gi|228635522|gb|EEK92011.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST24]
gi|228652920|gb|EEL08802.1| Transcription termination factor Rho [Bacillus cereus BDRD-Cer4]
gi|228670726|gb|EEL26037.1| Transcription termination factor Rho [Bacillus cereus Rock1-15]
gi|228700978|gb|EEL53501.1| Transcription termination factor Rho [Bacillus cereus Rock4-2]
gi|228710290|gb|EEL62265.1| Transcription termination factor Rho [Bacillus cereus F65185]
gi|228777712|gb|EEM25986.1| Transcription termination factor Rho [Bacillus thuringiensis Bt407]
gi|228784393|gb|EEM32416.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228798078|gb|EEM45082.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228804083|gb|EEM50701.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228817221|gb|EEM63309.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228835558|gb|EEM80923.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228848534|gb|EEM93382.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
200]
gi|228855834|gb|EEN00378.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
4222]
gi|296326808|gb|ADH09736.1| transcription termination factor Rho [Bacillus thuringiensis
BMB171]
gi|326943130|gb|AEA19026.1| transcription termination factor Rho [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 423
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|229020551|ref|ZP_04177295.1| Transcription termination factor Rho [Bacillus cereus AH1273]
gi|229026771|ref|ZP_04183103.1| Transcription termination factor Rho [Bacillus cereus AH1272]
gi|228734494|gb|EEL85156.1| Transcription termination factor Rho [Bacillus cereus AH1272]
gi|228740746|gb|EEL91000.1| Transcription termination factor Rho [Bacillus cereus AH1273]
Length = 423
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|229164280|ref|ZP_04292213.1| Transcription termination factor Rho [Bacillus cereus R309803]
gi|228619220|gb|EEK76113.1| Transcription termination factor Rho [Bacillus cereus R309803]
Length = 423
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|152977518|ref|YP_001377035.1| transcription termination factor Rho [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026270|gb|ABS24040.1| transcription termination factor Rho [Bacillus cytotoxicus NVH
391-98]
Length = 423
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|154687823|ref|YP_001422984.1| transcription termination factor Rho [Bacillus amyloliquefaciens
FZB42]
gi|308175436|ref|YP_003922141.1| transcription termination factor Rho [Bacillus amyloliquefaciens
DSM 7]
gi|154353674|gb|ABS75753.1| Rho [Bacillus amyloliquefaciens FZB42]
gi|307608300|emb|CBI44671.1| transcription termination factor Rho [Bacillus amyloliquefaciens
DSM 7]
gi|328555416|gb|AEB25908.1| transcription termination factor Rho [Bacillus amyloliquefaciens
TA208]
gi|328913786|gb|AEB65382.1| transcription termination factor Rho [Bacillus amyloliquefaciens
LL3]
Length = 428
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|30265355|ref|NP_847732.1| transcription termination factor Rho [Bacillus anthracis str. Ames]
gi|49188167|ref|YP_031420.1| transcription termination factor Rho [Bacillus anthracis str.
Sterne]
gi|50196969|ref|YP_052656.1| transcription termination factor Rho [Bacillus anthracis str. 'Ames
Ancestor']
gi|165871258|ref|ZP_02215907.1| transcription termination factor Rho [Bacillus anthracis str.
A0488]
gi|167636685|ref|ZP_02394973.1| transcription termination factor Rho [Bacillus anthracis str.
A0442]
gi|167640450|ref|ZP_02398714.1| transcription termination factor Rho [Bacillus anthracis str.
A0193]
gi|170688189|ref|ZP_02879400.1| transcription termination factor Rho [Bacillus anthracis str.
A0465]
gi|170709367|ref|ZP_02899780.1| transcription termination factor Rho [Bacillus anthracis str.
A0389]
gi|177651843|ref|ZP_02934426.1| transcription termination factor Rho [Bacillus anthracis str.
A0174]
gi|190569097|ref|ZP_03021996.1| transcription termination factor Rho [Bacillus anthracis
Tsiankovskii-I]
gi|227818095|ref|YP_002818104.1| transcription termination factor Rho [Bacillus anthracis str. CDC
684]
gi|229602998|ref|YP_002869547.1| transcription termination factor Rho [Bacillus anthracis str.
A0248]
gi|254687226|ref|ZP_05151084.1| transcription termination factor Rho [Bacillus anthracis str.
CNEVA-9066]
gi|254735261|ref|ZP_05192970.1| transcription termination factor Rho [Bacillus anthracis str.
Western North America USA6153]
gi|254744464|ref|ZP_05202144.1| transcription termination factor Rho [Bacillus anthracis str.
Kruger B]
gi|254755802|ref|ZP_05207834.1| transcription termination factor Rho [Bacillus anthracis str.
Vollum]
gi|254762142|ref|ZP_05213988.1| transcription termination factor Rho [Bacillus anthracis str.
Australia 94]
gi|30260033|gb|AAP29218.1| transcription termination factor Rho [Bacillus anthracis str. Ames]
gi|49182094|gb|AAT57470.1| transcription termination factor Rho [Bacillus anthracis str.
Sterne]
gi|50083031|gb|AAT70164.1| transcription termination factor Rho [Bacillus anthracis str. 'Ames
Ancestor']
gi|164712925|gb|EDR18453.1| transcription termination factor Rho [Bacillus anthracis str.
A0488]
gi|167511670|gb|EDR87052.1| transcription termination factor Rho [Bacillus anthracis str.
A0193]
gi|167527885|gb|EDR90707.1| transcription termination factor Rho [Bacillus anthracis str.
A0442]
gi|170125715|gb|EDS94629.1| transcription termination factor Rho [Bacillus anthracis str.
A0389]
gi|170667882|gb|EDT18634.1| transcription termination factor Rho [Bacillus anthracis str.
A0465]
gi|172082547|gb|EDT67611.1| transcription termination factor Rho [Bacillus anthracis str.
A0174]
gi|190559765|gb|EDV13751.1| transcription termination factor Rho [Bacillus anthracis
Tsiankovskii-I]
gi|227003371|gb|ACP13114.1| transcription termination factor Rho [Bacillus anthracis str. CDC
684]
gi|229267406|gb|ACQ49043.1| transcription termination factor Rho [Bacillus anthracis str.
A0248]
Length = 423
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|853769|emb|CAA89877.1| transcriptional terminator Rho [Bacillus subtilis subsp. subtilis
str. 168]
Length = 427
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKKYVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|228994051|ref|ZP_04153952.1| Transcription termination factor Rho [Bacillus pseudomycoides DSM
12442]
gi|229000119|ref|ZP_04159689.1| Transcription termination factor Rho [Bacillus mycoides Rock3-17]
gi|229007639|ref|ZP_04165233.1| Transcription termination factor Rho [Bacillus mycoides Rock1-4]
gi|228753650|gb|EEM03094.1| Transcription termination factor Rho [Bacillus mycoides Rock1-4]
gi|228759656|gb|EEM08632.1| Transcription termination factor Rho [Bacillus mycoides Rock3-17]
gi|228765699|gb|EEM14352.1| Transcription termination factor Rho [Bacillus pseudomycoides DSM
12442]
Length = 423
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|196233812|ref|ZP_03132651.1| putative phage repressor [Chthoniobacter flavus Ellin428]
gi|196222174|gb|EDY16705.1| putative phage repressor [Chthoniobacter flavus Ellin428]
Length = 311
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLN 199
K + SM P GDI ++ S I+ G +L++ GD+ K +R G R + L S+N
Sbjct: 225 KIEGDSMYPEINPGDIAVVRSDIEPRPGQVVLVRTLDGDVWCKRYSTRDGNRFVVLSSIN 284
Query: 200 CCYPVDTVEMSDIEWI 215
Y + I WI
Sbjct: 285 DTYRPFEISAESIAWI 300
>gi|221311669|ref|ZP_03593516.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315997|ref|ZP_03597802.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320908|ref|ZP_03602202.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325192|ref|ZP_03606486.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767787|ref|NP_391589.2| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. 168]
gi|296331347|ref|ZP_06873819.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676333|ref|YP_003868005.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii str. W23]
gi|321313258|ref|YP_004205545.1| transcription termination factor Rho [Bacillus subtilis BSn5]
gi|254763405|sp|Q03222|RHO_BACSU RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|143434|gb|AAA02900.1| Rho Factor [Bacillus subtilis]
gi|225185415|emb|CAB15725.2| transcriptional terminator Rho [Bacillus subtilis subsp. subtilis
str. 168]
gi|291486292|dbj|BAI87367.1| transcription termination factor Rho [Bacillus subtilis subsp.
natto BEST195]
gi|296151462|gb|EFG92339.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414577|gb|ADM39696.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii str. W23]
gi|320019532|gb|ADV94518.1| transcription termination factor Rho [Bacillus subtilis BSn5]
Length = 427
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|311070227|ref|YP_003975150.1| transcription termination factor Rho [Bacillus atrophaeus 1942]
gi|310870744|gb|ADP34219.1| transcription termination factor Rho [Bacillus atrophaeus 1942]
Length = 427
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|56965637|ref|YP_177371.1| transcription termination factor Rho [Bacillus clausii KSM-K16]
gi|56911883|dbj|BAD66410.1| transcriptional termination factor Rho [Bacillus clausii KSM-K16]
Length = 422
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|323702613|ref|ZP_08114275.1| transcription termination factor Rho [Desulfotomaculum nigrificans
DSM 574]
gi|323532432|gb|EGB22309.1| transcription termination factor Rho [Desulfotomaculum nigrificans
DSM 574]
Length = 446
Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
+ ++I R+A HNL PSG G+DP + +K KRF RN S+ + A
Sbjct: 265 LLDSITRLARAHNLVIPPSGRTLSGGVDPAALHKPKRFFGAARN-MEEGGSLTILATALI 323
Query: 67 ETICQLLDLPFSDGRTT 83
ET ++ D+ F + + T
Sbjct: 324 ETGSRMDDVIFEEFKGT 340
>gi|310639617|ref|YP_003944375.1| transcription termination factor rho [Paenibacillus polymyxa SC2]
gi|309244567|gb|ADO54134.1| transcription termination factor Rho [Paenibacillus polymyxa SC2]
Length = 445
Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 253 HKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 303
>gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM
17244]
gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM
17244]
Length = 197
Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
E + + + H +T LA LD +S K + GI PS +++ KI A N +I
Sbjct: 4 EKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGI-----IPSVDTLQKISALFNVSID 58
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
LL+ PF D E ++ +G G + +G+ + + +N
Sbjct: 59 YLLNAPFGDINNVMNVE----IIGTVVAGRDGI---------ATYEFLGISQAININN-- 103
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAKVLISR 188
+ + K + SM P +GD+ ++ ++ GD ++I G ++ KV +
Sbjct: 104 ---KDEYKYLKVRGDSMAPQILEGDLALVRLQPDIDSGDLAVVIIGGEEG-VIKKV--QK 157
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWI 215
SI L+S N Y D+E +
Sbjct: 158 TDNSISLISFNPMYDTRVFIGKDMEQL 184
>gi|308066970|ref|YP_003868575.1| transcription termination factor rho [Paenibacillus polymyxa E681]
gi|305856249|gb|ADM68037.1| Transcription termination factor rho [Paenibacillus polymyxa E681]
Length = 445
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 253 HKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 303
>gi|261404004|ref|YP_003240245.1| transcription termination factor Rho [Paenibacillus sp. Y412MC10]
gi|261280467|gb|ACX62438.1| transcription termination factor Rho [Paenibacillus sp. Y412MC10]
Length = 442
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 253 HKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 303
>gi|194016545|ref|ZP_03055159.1| transcription termination factor Rho [Bacillus pumilus ATCC 7061]
gi|194012018|gb|EDW21586.1| transcription termination factor Rho [Bacillus pumilus ATCC 7061]
Length = 427
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|171910721|ref|ZP_02926191.1| hypothetical protein VspiD_06095 [Verrucomicrobium spinosum DSM
4136]
Length = 407
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRT----GDIVAKVLISRRGRSIDLMSLNCC 201
+M P Y +G I I+ + GD +L + R G I+ V + G S+ L S +
Sbjct: 323 AMAPHYPEGCIAIICPGLPSRNGDLVLARLRDERGGGTILRLVHFIQDGESLVLTSTHAA 382
Query: 202 YPVDTVEMSDIEWIARI 218
YP TV+ D+ W+A +
Sbjct: 383 YPPLTVQKEDLLWLAPV 399
>gi|329930193|ref|ZP_08283806.1| transcription termination factor Rho [Paenibacillus sp. HGF5]
gi|328935215|gb|EGG31696.1| transcription termination factor Rho [Paenibacillus sp. HGF5]
Length = 442
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 253 HKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 303
>gi|15616343|ref|NP_244648.1| transcription termination factor Rho [Bacillus halodurans C-125]
gi|10176406|dbj|BAB07500.1| transcriptional terminator [Bacillus halodurans C-125]
Length = 423
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|251794176|ref|YP_003008907.1| transcription termination factor Rho [Paenibacillus sp. JDR-2]
gi|247541802|gb|ACS98820.1| transcription termination factor Rho [Paenibacillus sp. JDR-2]
Length = 449
Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 254 HKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|226315070|ref|YP_002774966.1| transcription termination factor [Brevibacillus brevis NBRC 100599]
gi|226098020|dbj|BAH46462.1| transcription termination factor [Brevibacillus brevis NBRC 100599]
Length = 426
Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 EHKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 301
>gi|315644455|ref|ZP_07897588.1| transcription termination factor Rho [Paenibacillus vortex V453]
gi|315280205|gb|EFU43498.1| transcription termination factor Rho [Paenibacillus vortex V453]
Length = 445
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 253 HKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 303
>gi|166240889|ref|ZP_02240761.1| transcription termination factor Rho [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 290
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 201 HKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPGAFHRPKRFFGSARN 251
>gi|317130778|ref|YP_004097060.1| transcription termination factor Rho [Bacillus cellulosilyticus DSM
2522]
gi|315475726|gb|ADU32329.1| transcription termination factor Rho [Bacillus cellulosilyticus DSM
2522]
Length = 453
Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP SF++ KRF RN
Sbjct: 290 LMDSITRLARAYNLVIPPSGRTLSGGIDPASFHRPKRFFGAARN 333
>gi|289662784|ref|ZP_06484365.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 184
Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
+ R+ +RH LT + LAR+ GL P+ N+ IE RN+ P T +I + L AT
Sbjct: 16 LQRLRQRHGLTQAELARRLGLSPSYLNQ-----IE-RNQRPLTLAIQQRLKAT 62
>gi|304393973|ref|ZP_07375897.1| XRE family transcriptional regulator [Ahrensia sp. R2A130]
gi|303293948|gb|EFL88324.1| XRE family transcriptional regulator [Ahrensia sp. R2A130]
Length = 271
Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 146 SMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P+Y I+ + + V R ++K G I+ K L RRG + +L +L+
Sbjct: 191 SMFPVYEDRAIIYYSDNVTDPSVMLNKRCVVKLANGRILVKKL--RRGTTDELWNLDSFN 248
Query: 203 PV-DTVEMSDIEWIARILWASQ 223
P T+E +EW+A+I W +
Sbjct: 249 PAFPTMEDQIVEWVAKIDWVKE 270
>gi|258513423|ref|YP_003189645.1| transcription termination factor Rho [Desulfotomaculum acetoxidans
DSM 771]
gi|257777128|gb|ACV61022.1| transcription termination factor Rho [Desulfotomaculum acetoxidans
DSM 771]
Length = 436
Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
HKK + ++I R+A HNL PSG G+DP + +K KRF R + S+
Sbjct: 250 EHKKDVVILMDSITRLARAHNLIVPPSGRTLSGGVDPAALHKPKRFFGAAR-KLEEGGSL 308
Query: 59 FKILAATNETICQLLDLPFSDGRTT 83
+ A ET ++ D+ F + + T
Sbjct: 309 TILATALVETGSRMDDVIFEEFKGT 333
>gi|229542472|ref|ZP_04431532.1| transcription termination factor Rho [Bacillus coagulans 36D1]
gi|229326892|gb|EEN92567.1| transcription termination factor Rho [Bacillus coagulans 36D1]
Length = 426
Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|260583442|ref|ZP_05851190.1| transcription termination factor Rho [Granulicatella elegans ATCC
700633]
gi|260158068|gb|EEW93136.1| transcription termination factor Rho [Granulicatella elegans ATCC
700633]
Length = 426
Score = 35.8 bits (81), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NLT PSG G+DP +F + KRF RN
Sbjct: 271 LLDSITRLARAYNLTIPPSGRTLSGGIDPAAFYRPKRFFGSARN 314
>gi|289679295|ref|ZP_06500185.1| transcriptional repressor pyocin R2_PP [Pseudomonas syringae pv.
syringae FF5]
Length = 244
Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 151 YRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
Y G I+ ++ I+ N GDR++ + PRT ++ KVL+ GR L +N YP+
Sbjct: 171 YPAGCIIFVDPDIEANPGDRVIARVPRTDEMTFKVLVEDAGRQF-LRPINPQYPI 224
>gi|149184889|ref|ZP_01863206.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21]
gi|148831000|gb|EDL49434.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21]
Length = 211
Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRL-----LIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
SM P GD ++++++ Q G RL +++ +V +V + GR I + S N
Sbjct: 129 SMEPTLSDGDEVLVDASDQ---GSRLRDGIYVLRADDALVVKRVTLKPGGRKITISSDNS 185
Query: 201 CYPV-DTVEMSDIEWIARILW 220
YP D V+ S+I+ + R++W
Sbjct: 186 AYPSWDDVDRSEIQVVGRVIW 206
>gi|52082242|ref|YP_081033.1| transcription termination factor Rho [Bacillus licheniformis ATCC
14580]
gi|52787634|ref|YP_093463.1| transcription termination factor Rho [Bacillus licheniformis ATCC
14580]
gi|319648116|ref|ZP_08002333.1| transcription termination factor rho [Bacillus sp. BT1B_CT2]
gi|52005453|gb|AAU25395.1| transcriptional terminator Rho [Bacillus licheniformis ATCC 14580]
gi|52350136|gb|AAU42770.1| Rho [Bacillus licheniformis ATCC 14580]
gi|317389751|gb|EFV70561.1| transcription termination factor rho [Bacillus sp. BT1B_CT2]
Length = 427
Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPGAFHRPKRFFGAARN 305
>gi|297585445|ref|YP_003701225.1| transcription termination factor Rho [Bacillus selenitireducens
MLS10]
gi|297143902|gb|ADI00660.1| transcription termination factor Rho [Bacillus selenitireducens
MLS10]
Length = 427
Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP SF++ KRF RN
Sbjct: 261 LMDSITRLARAYNLVVPPSGRTLSGGIDPASFHRPKRFFGAARN 304
>gi|295400665|ref|ZP_06810642.1| transcription termination factor Rho [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112645|ref|YP_003990961.1| transcription termination factor Rho [Geobacillus sp. Y4.1MC1]
gi|294977246|gb|EFG52847.1| transcription termination factor Rho [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217746|gb|ADP76350.1| transcription termination factor Rho [Geobacillus sp. Y4.1MC1]
Length = 424
Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|56421917|ref|YP_149235.1| transcription termination factor Rho [Geobacillus kaustophilus
HTA426]
gi|56381759|dbj|BAD77667.1| transcriptional terminator [Geobacillus kaustophilus HTA426]
Length = 424
Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|261420787|ref|YP_003254469.1| transcription termination factor Rho [Geobacillus sp. Y412MC61]
gi|297531582|ref|YP_003672857.1| transcription termination factor Rho [Geobacillus sp. C56-T3]
gi|319768457|ref|YP_004133958.1| transcription termination factor Rho [Geobacillus sp. Y412MC52]
gi|261377244|gb|ACX79987.1| transcription termination factor Rho [Geobacillus sp. Y412MC61]
gi|297254834|gb|ADI28280.1| transcription termination factor Rho [Geobacillus sp. C56-T3]
gi|317113323|gb|ADU95815.1| transcription termination factor Rho [Geobacillus sp. Y412MC52]
Length = 424
Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|138896958|ref|YP_001127411.1| transcription termination factor Rho [Geobacillus
thermodenitrificans NG80-2]
gi|196249776|ref|ZP_03148472.1| transcription termination factor Rho [Geobacillus sp. G11MC16]
gi|134268471|gb|ABO68666.1| Rho Factor [Geobacillus thermodenitrificans NG80-2]
gi|196210652|gb|EDY05415.1| transcription termination factor Rho [Geobacillus sp. G11MC16]
Length = 424
Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|212640543|ref|YP_002317063.1| transcription termination factor Rho [Anoxybacillus flavithermus
WK1]
gi|212562023|gb|ACJ35078.1| Transcriptional terminator Rho [Anoxybacillus flavithermus WK1]
Length = 428
Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 252 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 307
>gi|229014501|ref|ZP_04171619.1| Transcription termination factor Rho [Bacillus mycoides DSM 2048]
gi|228746851|gb|EEL96736.1| Transcription termination factor Rho [Bacillus mycoides DSM 2048]
Length = 421
Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 247 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 302
>gi|239828611|ref|YP_002951235.1| transcription termination factor Rho [Geobacillus sp. WCH70]
gi|239808904|gb|ACS25969.1| transcription termination factor Rho [Geobacillus sp. WCH70]
Length = 424
Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|163943020|ref|YP_001647904.1| transcription termination factor Rho [Bacillus weihenstephanensis
KBAB4]
gi|229064982|ref|ZP_04200280.1| Transcription termination factor Rho [Bacillus cereus AH603]
gi|229136151|ref|ZP_04264904.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST196]
gi|229170041|ref|ZP_04297732.1| Transcription termination factor Rho [Bacillus cereus AH621]
gi|163865217|gb|ABY46276.1| transcription termination factor Rho [Bacillus weihenstephanensis
KBAB4]
gi|228613388|gb|EEK70522.1| Transcription termination factor Rho [Bacillus cereus AH621]
gi|228647310|gb|EEL03392.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST196]
gi|228716283|gb|EEL67995.1| Transcription termination factor Rho [Bacillus cereus AH603]
Length = 423
Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|205375308|ref|ZP_03228098.1| transcription termination factor Rho [Bacillus coahuilensis m4-4]
Length = 424
Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|23100456|ref|NP_693923.1| transcription termination factor Rho [Oceanobacillus iheyensis
HTE831]
gi|22778689|dbj|BAC14957.1| transcriptional termination factor rho [Oceanobacillus iheyensis
HTE831]
Length = 426
Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 252 MRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 307
>gi|322382237|ref|ZP_08056150.1| transcription termination factor Rho-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321153818|gb|EFX46186.1| transcription termination factor Rho-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 419
Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 243 EHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPGAFHRPKRFFGSARN 294
>gi|323490899|ref|ZP_08096094.1| transcription termination factor Rho [Planococcus donghaensis
MPA1U2]
gi|323395379|gb|EGA88230.1| transcription termination factor Rho [Planococcus donghaensis
MPA1U2]
Length = 427
Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|89095596|ref|ZP_01168490.1| transcription termination factor Rho [Bacillus sp. NRRL B-14911]
gi|89089342|gb|EAR68449.1| transcription termination factor Rho [Bacillus sp. NRRL B-14911]
Length = 424
Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|288554413|ref|YP_003426348.1| transcription termination factor Rho [Bacillus pseudofirmus OF4]
gi|288545573|gb|ADC49456.1| transcription termination factor Rho [Bacillus pseudofirmus OF4]
Length = 424
Score = 35.4 bits (80), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M H+K + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 250 MRLVEHRKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|319650901|ref|ZP_08005037.1| transcription termination factor Rho [Bacillus sp. 2_A_57_CT2]
gi|317397394|gb|EFV78096.1| transcription termination factor Rho [Bacillus sp. 2_A_57_CT2]
Length = 421
Score = 35.4 bits (80), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 249 MRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|166032750|ref|ZP_02235579.1| hypothetical protein DORFOR_02465 [Dorea formicigenerans ATCC
27755]
gi|166027107|gb|EDR45864.1| hypothetical protein DORFOR_02465 [Dorea formicigenerans ATCC
27755]
Length = 450
Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NLT PSG GLDP + + KRF RN
Sbjct: 284 HKKDVMILLDSITRLARAYNLTVSPSGRTLSGGLDPAALHMPKRFFGAARN 334
>gi|3860233|gb|AAC73004.1| Sir2 homolog [Trypanosoma brucei]
Length = 351
Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
G+P+ RSPH G+YA ++ + +D LPL R+ + N
Sbjct: 43 AAGIPDFRSPHTGLYAKLSRYNLNSPEDAFSLPLLRQQPSVFYN 86
>gi|261329219|emb|CBH12198.1| NAD-dependent SIR2 [Trypanosoma brucei gambiense DAL972]
Length = 352
Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
G+P+ RSPH G+YA ++ + +D LPL R+
Sbjct: 43 AAGIPDFRSPHTGLYAKLSRYNLNSPEDAFSLPLLRQ 79
>gi|299537963|ref|ZP_07051249.1| transcription termination factor Rho [Lysinibacillus fusiformis
ZC1]
gi|298726545|gb|EFI67134.1| transcription termination factor Rho [Lysinibacillus fusiformis
ZC1]
Length = 427
Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 254 EHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 305
>gi|332971808|gb|EGK10756.1| transcription termination factor Rho [Desmospora sp. 8437]
Length = 420
Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HK+ + ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 253 HKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 303
>gi|317121000|ref|YP_004101003.1| transcription termination factor Rho [Thermaerobacter marianensis
DSM 12885]
gi|315590980|gb|ADU50276.1| transcription termination factor Rho [Thermaerobacter marianensis
DSM 12885]
Length = 865
Score = 35.4 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 11 EAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+++ R+ HNL PSG GLDP +F K KRF RN
Sbjct: 709 DSLTRLTRAHNLVTPPSGRTLSGGLDPAAFYKPKRFFGAARN 750
>gi|313903654|ref|ZP_07837044.1| transcription termination factor Rho [Thermaerobacter subterraneus
DSM 13965]
gi|313466207|gb|EFR61731.1| transcription termination factor Rho [Thermaerobacter subterraneus
DSM 13965]
Length = 672
Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 11 EAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+++ R+ HNL PSG GLDP +F K KRF RN
Sbjct: 516 DSLTRLTRAHNLVTPPSGRTLSGGLDPAAFYKPKRFFGAARN 557
>gi|212712325|ref|ZP_03320453.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM
30120]
gi|212685071|gb|EEB44599.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM
30120]
Length = 224
Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP-- 203
SM+P ++G+ +I+ GD +L+ T + + K + R I L S+N +P
Sbjct: 138 SMIPRIKEGEFVIIEPNHTYRPGDEVLLVTSTEETMVKTYLYERDGYIHLSSINDAHPPI 197
Query: 204 -VDTVEMSDIEWIARI----LWASQ 223
V+ +++ I ++A I LW +
Sbjct: 198 KVEQIKVDKIHYVAGIAKPSLWYEK 222
>gi|72390998|ref|XP_845793.1| silent information regulator 2 [Trypanosoma brucei TREU927]
gi|62176420|gb|AAX70528.1| silent information regulator 2 [Trypanosoma brucei]
gi|70802329|gb|AAZ12234.1| silent information regulator 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 351
Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
G+P+ RSPH G+YA ++ + +D LPL R+ + N
Sbjct: 43 AAGIPDFRSPHTGLYAKLSRYNLNSPEDAFSLPLLRQQPSVFYN 86
>gi|327441451|dbj|BAK17816.1| transcription termination factor [Solibacillus silvestris StLB046]
Length = 427
Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 305
>gi|304407310|ref|ZP_07388963.1| transcription termination factor Rho [Paenibacillus curdlanolyticus
YK9]
gi|304343751|gb|EFM09592.1| transcription termination factor Rho [Paenibacillus curdlanolyticus
YK9]
Length = 456
Score = 35.0 bits (79), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 261 LLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGSARN 304
>gi|315304808|ref|ZP_07874967.1| transcription termination factor Rho [Listeria ivanovii FSL F6-596]
gi|313626823|gb|EFR95797.1| transcription termination factor Rho [Listeria ivanovii FSL F6-596]
Length = 423
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|313622337|gb|EFR92824.1| transcription termination factor Rho [Listeria innocua FSL J1-023]
Length = 423
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|289435818|ref|YP_003465690.1| hypothetical protein lse_2457 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172062|emb|CBH28608.1| rho [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 423
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|16801757|ref|NP_472025.1| transcription termination factor Rho [Listeria innocua Clip11262]
gi|16415232|emb|CAC97922.1| rho [Listeria innocua Clip11262]
Length = 423
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|313631901|gb|EFR99050.1| transcription termination factor Rho [Listeria seeligeri FSL
N1-067]
Length = 423
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|313636259|gb|EFS02077.1| transcription termination factor Rho [Listeria seeligeri FSL
S4-171]
Length = 423
Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|254825314|ref|ZP_05230315.1| transcription termination factor Rho [Listeria monocytogenes FSL
J1-194]
gi|254828127|ref|ZP_05232814.1| transcription termination factor Rho [Listeria monocytogenes FSL
N3-165]
gi|254831026|ref|ZP_05235681.1| transcription termination factor Rho [Listeria monocytogenes
10403S]
gi|254853921|ref|ZP_05243269.1| transcription termination factor Rho [Listeria monocytogenes FSL
R2-503]
gi|255520817|ref|ZP_05388054.1| transcription termination factor Rho [Listeria monocytogenes FSL
J1-175]
gi|284802989|ref|YP_003414854.1| transcription termination factor Rho [Listeria monocytogenes
08-5578]
gi|284996130|ref|YP_003417898.1| transcription termination factor Rho [Listeria monocytogenes
08-5923]
gi|15054717|gb|AAK82680.1| transcription termination factor Rho [Listeria monocytogenes]
gi|258600512|gb|EEW13837.1| transcription termination factor Rho [Listeria monocytogenes FSL
N3-165]
gi|258607308|gb|EEW19916.1| transcription termination factor Rho [Listeria monocytogenes FSL
R2-503]
gi|284058551|gb|ADB69492.1| transcription termination factor Rho [Listeria monocytogenes
08-5578]
gi|284061597|gb|ADB72536.1| transcription termination factor Rho [Listeria monocytogenes
08-5923]
gi|293594560|gb|EFG02321.1| transcription termination factor Rho [Listeria monocytogenes FSL
J1-194]
Length = 423
Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|16804589|ref|NP_466074.1| transcription termination factor Rho [Listeria monocytogenes EGD-e]
gi|47097667|ref|ZP_00235183.1| transcription termination factor Rho [Listeria monocytogenes str.
1/2a F6854]
gi|224500705|ref|ZP_03669054.1| transcription termination factor Rho [Listeria monocytogenes
Finland 1988]
gi|224503209|ref|ZP_03671516.1| transcription termination factor Rho [Listeria monocytogenes FSL
R2-561]
gi|254900310|ref|ZP_05260234.1| transcription termination factor Rho [Listeria monocytogenes J0161]
gi|254913451|ref|ZP_05263463.1| rho [Listeria monocytogenes J2818]
gi|254937832|ref|ZP_05269529.1| transcription termination factor Rho [Listeria monocytogenes F6900]
gi|255025427|ref|ZP_05297413.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-003]
gi|16412039|emb|CAD00629.1| rho [Listeria monocytogenes EGD-e]
gi|47013959|gb|EAL04976.1| transcription termination factor Rho [Listeria monocytogenes str.
1/2a F6854]
gi|258610436|gb|EEW23044.1| transcription termination factor Rho [Listeria monocytogenes F6900]
gi|293591458|gb|EFF99792.1| rho [Listeria monocytogenes J2818]
Length = 423
Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|315283722|ref|ZP_07871821.1| transcription termination factor Rho [Listeria marthii FSL S4-120]
gi|313612637|gb|EFR86680.1| transcription termination factor Rho [Listeria marthii FSL S4-120]
Length = 423
Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|311033348|ref|ZP_07711438.1| transcription termination factor Rho [Bacillus sp. m3-13]
Length = 423
Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 261 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 304
>gi|116873917|ref|YP_850698.1| transcription termination factor Rho [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116742795|emb|CAK21919.1| transcription termination factor [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 423
Score = 35.0 bits (79), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|299821835|ref|ZP_07053723.1| transcription termination factor Rho [Listeria grayi DSM 20601]
gi|299817500|gb|EFI84736.1| transcription termination factor Rho [Listeria grayi DSM 20601]
Length = 431
Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 270 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 313
>gi|167759402|ref|ZP_02431529.1| hypothetical protein CLOSCI_01749 [Clostridium scindens ATCC 35704]
gi|167662959|gb|EDS07089.1| hypothetical protein CLOSCI_01749 [Clostridium scindens ATCC 35704]
Length = 447
Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NLT PSG GLDP + + KRF RN
Sbjct: 280 EHKKDVMILLDSITRLARAYNLTVPPSGRTLSGGLDPAALHMPKRFFGAARN 331
>gi|46908722|ref|YP_015111.1| transcription termination factor Rho [Listeria monocytogenes
serotype 4b str. F2365]
gi|226225098|ref|YP_002759205.1| transcription terminator factor rho [Listeria monocytogenes
Clip81459]
gi|46881994|gb|AAT05288.1| transcription termination factor Rho [Listeria monocytogenes
serotype 4b str. F2365]
gi|225877560|emb|CAS06274.1| Putative transcription terminator factor rho [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|328465153|gb|EGF36421.1| transcription termination factor Rho [Listeria monocytogenes 1816]
Length = 423
Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|217963346|ref|YP_002349024.1| transcription termination factor Rho [Listeria monocytogenes HCC23]
gi|290892713|ref|ZP_06555705.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-071]
gi|217332616|gb|ACK38410.1| transcription termination factor Rho [Listeria monocytogenes HCC23]
gi|290557773|gb|EFD91295.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-071]
gi|307572077|emb|CAR85256.1| rho [Listeria monocytogenes L99]
gi|313606709|gb|EFR83438.1| transcription termination factor Rho [Listeria monocytogenes FSL
F2-208]
Length = 423
Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|254932208|ref|ZP_05265567.1| transcription termination factor Rho [Listeria monocytogenes
HPB2262]
gi|9247160|gb|AAD09997.2| transcription termination factor Rho [Listeria monocytogenes]
gi|293583763|gb|EFF95795.1| transcription termination factor Rho [Listeria monocytogenes
HPB2262]
gi|328471065|gb|EGF41972.1| transcription termination factor Rho [Listeria monocytogenes 220]
gi|332312980|gb|EGJ26075.1| Transcription termination factor Rho [Listeria monocytogenes str.
Scott A]
Length = 423
Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|47093877|ref|ZP_00231619.1| transcription termination factor Rho [Listeria monocytogenes str.
4b H7858]
gi|47017751|gb|EAL08542.1| transcription termination factor Rho [Listeria monocytogenes str.
4b H7858]
Length = 423
Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|188492331|ref|ZP_02999601.1| bacteriophage CI repressor protein [Escherichia coli 53638]
gi|188487530|gb|EDU62633.1| bacteriophage CI repressor protein [Escherichia coli 53638]
Length = 129
Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
E +D ++++H+L+ S LAR AG+ +S N K+ G S +S KI ATN ++
Sbjct: 14 ERLDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGT------ISKDSAAKIAEATNVSLS 67
Query: 71 QLLDLPFSDGRTT-EKKEKEIPLLY--FPP 97
LL R T + EK + +Y PP
Sbjct: 68 WLLTGKEDSNRETLDDDEKALLDVYRNLPP 97
>gi|255028931|ref|ZP_05300882.1| transcription termination factor Rho [Listeria monocytogenes LO28]
Length = 370
Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 209 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 252
>gi|225568384|ref|ZP_03777409.1| hypothetical protein CLOHYLEM_04461 [Clostridium hylemonae DSM
15053]
gi|225162612|gb|EEG75231.1| hypothetical protein CLOHYLEM_04461 [Clostridium hylemonae DSM
15053]
Length = 207
Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 6 HKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
HKK + ++I R+A +NLT PSG GLDP + + KRF RN
Sbjct: 41 HKKDVMILLDSITRLARAYNLTVPPSGRTLSGGLDPAALHMPKRFFGAARN 91
>gi|254992825|ref|ZP_05275015.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-064]
Length = 449
Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 262 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 305
>gi|229917068|ref|YP_002885714.1| transcription termination factor Rho [Exiguobacterium sp. AT1b]
gi|229468497|gb|ACQ70269.1| transcription termination factor Rho [Exiguobacterium sp. AT1b]
Length = 445
Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 1 MTSFSHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
M HKK + ++I R+ +NL+ PSG G+DP +F+K K+F RN
Sbjct: 265 MRLVEHKKDVVILLDSITRLTRAYNLSVPPSGRTLSGGIDPAAFHKPKKFFGAARN 320
>gi|85375768|ref|YP_459830.1| prophage MuMc02, S24 family peptidase [Erythrobacter litoralis
HTCC2594]
gi|84788851|gb|ABC65033.1| prophage MuMc02, peptidase, family S24 [Erythrobacter litoralis
HTCC2594]
Length = 211
Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRL-----LIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
SM P GD ++++++ + G RL +++ +V +V + GR I + S N
Sbjct: 129 SMEPTLSDGDEVLVDAS---DEGSRLRDGIYVLRADDALVVKRVTLKPGGRKITISSDNA 185
Query: 201 CYPV-DTVEMSDIEWIARILW 220
YP D V+ S+I+ + R++W
Sbjct: 186 AYPSWDDVDRSEIQVVGRVIW 206
>gi|291520816|emb|CBK79109.1| transcription termination factor Rho [Coprococcus catus GD/7]
Length = 593
Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 5 SHKK----IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
HKK + ++I R+A +NLT PSG GLDP + + K+F RN S+
Sbjct: 426 EHKKDVVILLDSITRLARAYNLTVPPSGRTLSGGLDPAALHMPKKFFGAARNMREGG-SL 484
Query: 59 FKILAATNETICQLLDLPFSDGRTT 83
+ A ET ++ D+ F + + T
Sbjct: 485 TVLATALVETGSKMDDVVFEEFKGT 509
>gi|332160963|ref|YP_004297540.1| putative repressor CI from bacteriophage origin [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325665193|gb|ADZ41837.1| Putative repressor CI from bacteriophage origin [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862119|emb|CBX72283.1| hypothetical protein YEW_AK02200 [Yersinia enterocolitica W22703]
Length = 225
Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 62 LAATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
++ + T C L+D + G E ++IP++ G+GGF++ +P G+
Sbjct: 63 VSVIDLTECNLMDGTAKTVIDVGGDPHEMHFRDIPVVGNAQLGNGGFWNDMEYPIGSGDG 122
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
+ P S YA+ K SM+P ++G+ +I+ GD +L+
Sbjct: 123 FIRWP---SYDPDAYAL-------KCVGDSMMPRIKEGEFVIIEPGHNYIPGDEVLVVTD 172
Query: 177 TGDIVAKVLISRRGRSIDLMSLN 199
+++ K + R I L+ +N
Sbjct: 173 KDEVMVKTFLFERDGYIHLLPVN 195
>gi|65317308|ref|ZP_00390267.1| COG1158: Transcription termination factor [Bacillus anthracis
str. A2012]
Length = 167
Score = 34.7 bits (78), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 5 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 48
>gi|168702920|ref|ZP_02735197.1| hypothetical protein GobsU_25546 [Gemmata obscuriglobus UQM 2246]
Length = 248
Score = 34.7 bits (78), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK-----KEKEIPLLYFPPSGSGGFF 104
N+ STE + LAA + + L LPF T + + +++P+L F GGF
Sbjct: 128 NKQESTE---RWLAA--QRLPDRLPLPFDYDLLTYRGHETVQGRDVPVLVFRSRTDGGFA 182
Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
VFP + +N VPE+ S H + Q +R
Sbjct: 183 VVYVFPHDSGFNLKNVPEVSSSHARAQVLVKQGSR 217
>gi|300764949|ref|ZP_07074937.1| hypothetical protein LMHG_11601 [Listeria monocytogenes FSL N1-017]
gi|300514249|gb|EFK41308.1| hypothetical protein LMHG_11601 [Listeria monocytogenes FSL N1-017]
Length = 238
Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 IWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRN 50
+ ++I R+A +NL PSG G+DP +F++ KRF RN
Sbjct: 77 LMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARN 120
Searching..................................................done
Results from round 2
>gi|75674664|ref|YP_317085.1| peptidase S24 [Nitrobacter winogradskyi Nb-255]
gi|74419534|gb|ABA03733.1| peptidase S24 [Nitrobacter winogradskyi Nb-255]
Length = 210
Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats.
Identities = 101/223 (45%), Positives = 140/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLAR+AGLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAAT I + TE+ K +PLL F +G+GG+FD G FP G W+ VG+
Sbjct: 61 ALAATGTAIDTFVQFIED----TERAAKAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GD+++++ + GDR+++K R G++
Sbjct: 117 PCVNDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R R+I+L SLN + T+ S++EWIARI+WASQ
Sbjct: 168 MVKELKRRTARTIELQSLNPSHANRTLPASEVEWIARIVWASQ 210
>gi|239834343|ref|ZP_04682671.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
gi|239822406|gb|EEQ93975.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
Length = 227
Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats.
Identities = 104/228 (45%), Positives = 144/228 (63%), Gaps = 14/228 (6%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MT FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K
Sbjct: 9 MTMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAK 68
Query: 61 ILAATNETICQLLDLPFSDGRTTE-----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
++ AT T + L + RT + + + IPLL +G+GG+FD FP G W
Sbjct: 69 VMEATGSTFDEFTRLIGGETRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGW 128
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P S G+YA++ SMLPLYR GD LI+ + GDR++++
Sbjct: 129 DIVEFPA--STGEGVYALE-------VSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRT 179
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ G+++AK+L + R+I+L SLN +P E DIEW+ARILWASQ
Sbjct: 180 KDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESRDIEWVARILWASQ 227
>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040121|gb|ACT56917.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 223
Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats.
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK
Sbjct: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV
Sbjct: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI
Sbjct: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ
Sbjct: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
>gi|153011349|ref|YP_001372563.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
gi|151563237|gb|ABS16734.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
Length = 217
Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats.
Identities = 101/226 (44%), Positives = 140/226 (61%), Gaps = 14/226 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTE-----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT T + L RT + + + IPLL +G+GG+FD FP G W+
Sbjct: 61 EATGSTFDEFTRLIRGGNRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGWDI 120
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
V P G+YA++ SMLPLYR GD LI+ + GDR++++ +
Sbjct: 121 VEFPA--GSGEGVYALE-------VSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRTKD 171
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEW+ARILWASQ
Sbjct: 172 GEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWVARILWASQ 217
>gi|85713691|ref|ZP_01044681.1| peptidase S24 [Nitrobacter sp. Nb-311A]
gi|85699595|gb|EAQ37462.1| peptidase S24 [Nitrobacter sp. Nb-311A]
Length = 210
Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats.
Identities = 99/223 (44%), Positives = 139/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLAR+AGLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAAT+ I + R + +PLL F +G+GG+FD G FP G W+ VG+
Sbjct: 61 ALAATDTAIDTFVQFIEDSARAAQA----VPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GD+++++ + GDR+++K R G++
Sbjct: 117 PAVNDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R ++I+L SLN + T+ SD+EWIARI+WASQ
Sbjct: 168 MVKELKRRTAKTIELQSLNPSHANRTLPASDVEWIARIVWASQ 210
>gi|92116178|ref|YP_575907.1| putative phage repressor [Nitrobacter hamburgensis X14]
gi|91799072|gb|ABE61447.1| putative phage repressor [Nitrobacter hamburgensis X14]
Length = 210
Score = 333 bits (855), Expect = 8e-90, Method: Composition-based stats.
Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLARKAGLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MAMLTHAQIWTALDRLAERSGLSPSGLARKAGLDPTTFNKSKRITGDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAAT+ I + R T+ +PLL F +G+GG+FD G FP G W+ VG+
Sbjct: 61 ALAATDTAIDTFVQFIEDTARATQA----VPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GD+++++ + GDR+++K R G++
Sbjct: 117 PSVHDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGTSIRRGDRVVVKTRDGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + I+L SLN + T+ SD+EWIARI+WASQ
Sbjct: 168 MVKELKRRTAKMIELQSLNPNHVNRTLAASDVEWIARIVWASQ 210
>gi|316932334|ref|YP_004107316.1| putative phage repressor [Rhodopseudomonas palustris DX-1]
gi|315600048|gb|ADU42583.1| putative phage repressor [Rhodopseudomonas palustris DX-1]
Length = 210
Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats.
Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L ATN I + L + + +PLL +GSGG+FD G FP G W +G+
Sbjct: 61 ALQATNTAIDTFVQLIHDR----PRVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWEEIGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P I H YA+Q SM P YR GDI++++ + V+ GDR+++K G++
Sbjct: 117 PSISDEH--AYALQ-------ISGDSMKPAYRHGDIVVVSPSAAVHRGDRVVVKTTKGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + I+L SLN +P T+ S++EWI RI+WASQ
Sbjct: 168 MVKELKRRTAKVIELASLNPSHPDRTLAPSEVEWIGRIVWASQ 210
>gi|299134039|ref|ZP_07027232.1| putative phage repressor [Afipia sp. 1NLS2]
gi|298590786|gb|EFI50988.1| putative phage repressor [Afipia sp. 1NLS2]
Length = 207
Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 14/221 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H +IW A+DR+A R L+PSGLA++AGLDPT+FNKSKR +GR RWPSTES+ K L
Sbjct: 1 MLTHDQIWTALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTSDGRERWPSTESVAKAL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AAT ++ + S R+ + +PLL F +GSGG+FD G FP G W+ VG+P
Sbjct: 61 AATGISVDTFVHFIESSSRSVQ-----VPLLGFAEAGSGGYFDDGGFPVGKGWDEVGLPS 115
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H YA++ SM P YR GD+++++ + + GDR+++K + G+++
Sbjct: 116 VNDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPSAPIRRGDRVVVKTKDGEVMV 166
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R + I+L SLN + T+ S+IEWIARILWASQ
Sbjct: 167 KELRRRTQKVIELQSLNPAHSDRTLPTSEIEWIARILWASQ 207
>gi|39933872|ref|NP_946148.1| S24 family peptidase [Rhodopseudomonas palustris CGA009]
gi|192289291|ref|YP_001989896.1| phage repressor [Rhodopseudomonas palustris TIE-1]
gi|39647719|emb|CAE26239.1| Peptidase family S24 [Rhodopseudomonas palustris CGA009]
gi|192283040|gb|ACE99420.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
Length = 210
Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats.
Identities = 99/223 (44%), Positives = 138/223 (61%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L ATN I + L + + +PLL +GSGG+FD G FP G W+ VG+
Sbjct: 61 ALQATNTAIDTFVQLIHDR----PRVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P I H YA++ SM P YR GDI++++ + V+ GDR+++K G++
Sbjct: 117 PSITDEH--AYALE-------ISGDSMKPAYRSGDIVVVSPSATVHRGDRVVVKTTKGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + ++L SLN +P T+ S+IEWI RI+WASQ
Sbjct: 168 MVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ 210
>gi|90422277|ref|YP_530647.1| putative phage repressor [Rhodopseudomonas palustris BisB18]
gi|90104291|gb|ABD86328.1| putative phage repressor [Rhodopseudomonas palustris BisB18]
Length = 208
Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats.
Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 13/221 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H +IW A+DR+AER L+PSGLA+++GLDPT+FNKSKR +GR RWPSTES+ K L
Sbjct: 1 MLTHDQIWTALDRLAERAGLSPSGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAKAL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AATN I + L + + +PLL +GSGG+FD G FP G W+ VG+P
Sbjct: 61 AATNTAIDAFVQLI----GDGPRAVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPS 116
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H YA++ SM P YR GD+++++ + GDR+++K R G+++
Sbjct: 117 VNDEH--AYALE-------ISGDSMKPAYRAGDVIVVSPGSPIRRGDRVVVKTRDGEVMV 167
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R ++++L+SLN +P T+ +++EWIARI+WASQ
Sbjct: 168 KELKRRTAKTLELLSLNPSHPDRTLAPAEVEWIARIVWASQ 208
>gi|13474687|ref|NP_106256.1| repressor protein CI [Mesorhizobium loti MAFF303099]
gi|14025442|dbj|BAB52042.1| repressor protein CI [Mesorhizobium loti MAFF303099]
Length = 212
Score = 330 bits (847), Expect = 7e-89, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 9/221 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR +GR RWPSTES+ KI+
Sbjct: 1 MLSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKII 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT ++ + L T + +PLL F +G+GGFFD FP G W+ V +P
Sbjct: 61 EATGASLDEFTGLIEGRMSTAPAHRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLVELPA 120
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + YA+Q Q SMLPLYR GD+LI+ GDR+++K +G+++A
Sbjct: 121 QSTESS--YALQ-------VQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSGEVMA 171
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
KVL + +SI L+SLN +P + M ++EW+ARI+WASQ
Sbjct: 172 KVLDRQTVKSIALVSLNPDHPDRDIPMREVEWVARIVWASQ 212
>gi|115522745|ref|YP_779656.1| putative phage repressor [Rhodopseudomonas palustris BisA53]
gi|115516692|gb|ABJ04676.1| putative phage repressor [Rhodopseudomonas palustris BisA53]
Length = 208
Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 13/221 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K L
Sbjct: 1 MLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKAL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AATN I + L R + +PLL F +G+GG+FD G FP G W+ VG+P+
Sbjct: 61 AATNTAIDSFVRLIGDRARPVQ----SVPLLGFAQAGAGGYFDDGGFPVGKGWDEVGLPQ 116
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H YA++ SM P YR GD+++++ V GDR+++K G+++
Sbjct: 117 VNDEH--AYALE-------ISGDSMKPAYRAGDVIVVSPGTPVRRGDRVVVKTNNGEVMV 167
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R ++++L SLN +P T+ +D+EWIARI+WASQ
Sbjct: 168 KELKRRTSKTLELASLNPSHPDRTLAPADVEWIARIVWASQ 208
>gi|298290079|ref|YP_003692018.1| phage repressor [Starkeya novella DSM 506]
gi|296926590|gb|ADH87399.1| putative phage repressor [Starkeya novella DSM 506]
Length = 206
Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 15/221 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H +IW AID++AERH L+ S LA++AGLDPT+FN+SKR +GR RWPSTESI KIL
Sbjct: 1 MLTHAQIWRAIDQLAERHGLSASALAKRAGLDPTTFNRSKREQPDGRARWPSTESIAKIL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AAT ++ + L R + IPL+ F +G GG+FD FP G W+ + P
Sbjct: 61 AATGASLDDFMALIGGGTR------RAIPLIGFAQAGRGGYFDDAGFPVGGAWDEIEFPN 114
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H YA++ SMLPLYR GD+++++ A GDR+++K R G+++A
Sbjct: 115 VGDEH--AYALE-------IAGDSMLPLYRDGDVVVVSPAAATRRGDRVIVKTREGEVMA 165
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R ++++L SLN + + +I WIAR+LWASQ
Sbjct: 166 KELKRRTAKTVELRSLNPEHADRVFQEGEIAWIARVLWASQ 206
>gi|323135593|ref|ZP_08070676.1| putative phage repressor [Methylocystis sp. ATCC 49242]
gi|322398684|gb|EFY01203.1| putative phage repressor [Methylocystis sp. ATCC 49242]
Length = 213
Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats.
Identities = 95/220 (43%), Positives = 134/220 (60%), Gaps = 11/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
SH +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR GR RWPSTESI K+L
Sbjct: 5 LSHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRETASGRQRWPSTESIAKVLQ 64
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ + + L ++ K + PL+ +G+GGFFD F G W+ + V
Sbjct: 65 ATGASLDEFMALVSANSSACRKHTR--PLIGLAQAGAGGFFDDAGFAIGAGWDEIDVLAD 122
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H+ YA++ SM PLYR GD++I++ A V GDR+++K G+I+AK
Sbjct: 123 ADEHS--YALE-------ISGDSMFPLYRDGDVVIVSPAAPVRRGDRVVVKTTDGEIMAK 173
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L + R+++L S+N YP + ++ WIARILWASQ
Sbjct: 174 ELKRQTARTVELRSINPAYPDRVIPREEVSWIARILWASQ 213
>gi|288957020|ref|YP_003447361.1| hypothetical protein AZL_001790 [Azospirillum sp. B510]
gi|288909328|dbj|BAI70817.1| hypothetical protein AZL_001790 [Azospirillum sp. B510]
Length = 210
Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
H IW AIDR+A +H L+ SGLAR+AGLDPT+FNKSKR +G+ RWPSTESI K+L
Sbjct: 1 MLKHTDIWRAIDRLAAQHGLSASGLARRAGLDPTTFNKSKRTTNDGKLRWPSTESISKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT ++ + + L T + +P++ + +GS G+FD FP G+ W+ + P
Sbjct: 61 DATGASLSEFVSLVGDGAGTGP--LQRVPVIGYAQAGSAGYFDDAGFPAGSGWDELLFPS 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ PH YA++ SM P+YR GD +I++ A Q+ DR++++ + G+++A
Sbjct: 119 LGDPH--AYALE-------ISGDSMEPVYRDGDTIIVSPAAQIRRNDRVVVRTKGGEVMA 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K LI I+L+S+N +P ++ ++D+ W+ARI+WASQ
Sbjct: 170 KQLIRETATKIELLSINRAHPDRSIPLADVAWMARIIWASQ 210
>gi|260461922|ref|ZP_05810167.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
gi|259032169|gb|EEW33435.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
Length = 216
Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 13/225 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR +GR RWPSTES+ KI+
Sbjct: 1 MLSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKII 60
Query: 63 AATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
AT ++ + L + + + +PLL F +G+GGFFD FP G W+ V
Sbjct: 61 EATGASLDEFTGLIEGRAGLVHDARDGRRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLV 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+P + + YA+Q Q SMLPLYR GD+LI+ GDR+++K G
Sbjct: 121 ELPAQSTESS--YALQ-------VQGDSMLPLYRNGDVLIVEPGAATRKGDRVVVKTTAG 171
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AKVL + +SI L+SLN +P + M ++EW+ARI+WASQ
Sbjct: 172 EVMAKVLERQTVKSISLVSLNPDHPDRDISMREVEWVARIVWASQ 216
>gi|319785581|ref|YP_004145057.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317171469|gb|ADV15007.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 216
Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 13/225 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH ++W AID +AER++L+ SGLA++AGLD T+FNKSKR +GR RWPSTES+ KI+
Sbjct: 1 MLSHDRVWAAIDALAERYSLSASGLAKRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKIM 60
Query: 63 AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
AT ++ + L + + +PLL F +G+GGFFD FP G W+ +
Sbjct: 61 EATGASLDEFTGLIEGRAGASHAASVARRSSVPLLGFAQAGAGGFFDDAGFPAGQGWDLI 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+P + + YA+Q Q SMLPLYR GD+LI+ GDR+++K +G
Sbjct: 121 ELPTQSTESS--YALQ-------VQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSG 171
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AKVL + RSI L+SLN +P + M D+EW+ARI+WASQ
Sbjct: 172 EVMAKVLERQTVRSIALVSLNPDHPDRDIPMRDVEWVARIVWASQ 216
>gi|144899439|emb|CAM76303.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
MSR-1]
Length = 212
Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 9/221 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H IW A+D +A + LT S LAR+AGLDPT+FNKSKR EG+ RWPSTES+ K+L
Sbjct: 1 MLTHADIWAALDSLARDNGLTASALARRAGLDPTTFNKSKRITREGKLRWPSTESVAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT ++ QLL+ K IPL+ +G G+FD +P G W+ + PE
Sbjct: 61 DATGSSLGQLLNYIDDSLPAPVVKGATIPLIGSAQAGDRGYFDDAGYPCGGGWDEIPFPE 120
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + YA++ SM PLYR GDI+I++ A V GDR+++K G+++
Sbjct: 121 VGD--SNAYALE-------VSGDSMEPLYRDGDIVIVSPAASVRRGDRVVVKTLEGEVMV 171
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K LI + + I+L SLN +P ++ ++ W+ARILWASQ
Sbjct: 172 KQLIRQTAKRIELASLNPAHPGRSLAAEEVSWLARILWASQ 212
>gi|154250891|ref|YP_001411715.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
gi|154154841|gb|ABS62058.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
Length = 214
Score = 321 bits (822), Expect = 6e-86, Method: Composition-based stats.
Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 10/221 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH ++W AID +A RH LT SGLA+ AGLDPT+FNKSKR GR RWP+TES+ +IL
Sbjct: 4 KLSHNRLWAAIDALAGRHGLTASGLAKAAGLDPTTFNKSKRVTAAGRPRWPNTESLARIL 63
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT ++ L L +DG ++ +PL+ +G GGFFD FP G+ W V P+
Sbjct: 64 DATGSSLEDFLVLV-ADGEVAFTPQRHVPLIGLAQAGRGGFFDDAGFPVGSGWEEVAFPD 122
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H YA++ SM P YR GDI++++ ++ GDR+++K +++A
Sbjct: 123 FKDEH--AYALE-------VSGDSMEPFYRAGDIIVVSPGAEIRRGDRVVVKTAGDEVMA 173
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
KVL + IDL SLN Y +++ +I W+ARI+WASQ
Sbjct: 174 KVLARKTATRIDLQSLNPAYEDRSLKPEEIVWMARIIWASQ 214
>gi|296446773|ref|ZP_06888712.1| putative phage repressor [Methylosinus trichosporium OB3b]
gi|296255776|gb|EFH02864.1| putative phage repressor [Methylosinus trichosporium OB3b]
Length = 213
Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats.
Identities = 92/220 (41%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR +G RWPSTESI K+L
Sbjct: 5 LTHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRQTADGHLRWPSTESIAKVLQ 64
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT + + + L S G + + PL+ +G GGFFD F G W + V
Sbjct: 65 ATGAGLDEFMTLVSSKGARPSRSAR--PLIGLAQAGVGGFFDDAGFAIGAGWEEIDVLAD 122
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H+ YA++ SM PLYR GDI+I++ + V GDR+++K G+I+AK
Sbjct: 123 TDEHS--YALE-------ISGDSMAPLYRDGDIVIVSPSAPVRRGDRVVVKTIAGEILAK 173
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L + ++++L SLN +P + ++ W+ARILWASQ
Sbjct: 174 ELKRQTAKTVELKSLNPAFPDRVLPKEEVSWMARILWASQ 213
>gi|154245416|ref|YP_001416374.1| putative phage repressor [Xanthobacter autotrophicus Py2]
gi|154159501|gb|ABS66717.1| putative phage repressor [Xanthobacter autotrophicus Py2]
Length = 225
Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 22/234 (9%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H ++W AID++AE+H L+ SGLAR++GLDPT+FN+SKR +GR RWPSTESI K L
Sbjct: 1 MLTHGQVWRAIDQLAEQHGLSTSGLARRSGLDPTTFNRSKRITTDGRLRWPSTESIAKAL 60
Query: 63 AATNETICQLLDLPFS-------------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
+AT + + + + IP + F +GSGGFFD F
Sbjct: 61 SATGTSAELFFAMMVPADERHGGAHGFAEESQPLTGPIHAIPQIGFAQAGSGGFFDDAGF 120
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P G W+ + PE+ H YA++ SM P+YR GDI++++ V GD
Sbjct: 121 PVGTGWDEIAFPEVEDQH--AYALE-------IAGDSMQPVYRNGDIVVVSPGTPVRRGD 171
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R+++K R G+++AK L+ + R ++L SLN + + + +EW+ARI+WASQ
Sbjct: 172 RVVVKTREGEVLAKELVRKTTRHVELRSLNPAHEDRQIPLDQLEWMARIIWASQ 225
>gi|209883821|ref|YP_002287678.1| peptidase S24 [Oligotropha carboxidovorans OM5]
gi|209872017|gb|ACI91813.1| peptidase S24 [Oligotropha carboxidovorans OM5]
Length = 207
Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 14/221 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H +IW A+DR+A R L+PSGLA++AGLDPT+FNKSKR +GR RWPSTES+ K L
Sbjct: 1 MMTHDQIWAALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTNDGRERWPSTESVAKAL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AAT ++ S RT + +PLL F +GSGG+FD G FP G WN VG+P
Sbjct: 61 AATGVSVDTFAHFIESSSRTVQ-----VPLLGFAEAGSGGYFDDGGFPVGEGWNEVGLPS 115
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H YA++ SM P YR GD+++++ + GDR+++K + G+++
Sbjct: 116 VNDEH--AYALE-------ISGDSMKPAYRDGDVIVVSPGAPIRRGDRVVVKTKDGEVMV 166
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L R + I+L SLN +P T ++I+WIARI+WASQ
Sbjct: 167 KELRRRTQKVIELQSLNPAHPDRTFPTAEIDWIARIVWASQ 207
>gi|239787365|emb|CAX83841.1| Predicted transcriptional regulator [uncultured bacterium]
Length = 210
Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats.
Identities = 91/221 (41%), Positives = 135/221 (61%), Gaps = 11/221 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
H IW AIDR+A +H LT SGLARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L
Sbjct: 1 MLRHADIWHAIDRLAFKHGLTASGLARKAGLDPTTFNKSKRTSPEGKLRWPSTESVAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT +I + + + + T + IPL+ +GS G+FD +PTG W+ + PE
Sbjct: 61 TATGASIAEFVTMIDNPDETGA--VQRIPLIGLAQAGSDGYFDDAGYPTGAGWDEIPFPE 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + YA++ SM PLYR+GDI+I++ A Q+ DR+++K G+++
Sbjct: 119 MGD--SKAYALE-------ITGDSMEPLYREGDIVIVSPAAQIRRADRVIVKTNDGEVMV 169
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L+ R + +DL SLN +P ++ + ++ I R++WASQ
Sbjct: 170 KQLLRRTAKFVDLQSLNDQHPNRSLPIEEVALIHRVVWASQ 210
>gi|315122107|ref|YP_004062596.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495509|gb|ADR52108.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 216
Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats.
Identities = 182/223 (81%), Positives = 195/223 (87%), Gaps = 7/223 (3%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MT FSH+KIWEAID+MA+RHNLTPSGLARKAGLDPTSFNKSKRFG+EGRNRWPSTESI K
Sbjct: 1 MTKFSHEKIWEAIDQMAKRHNLTPSGLARKAGLDPTSFNKSKRFGVEGRNRWPSTESISK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
IL ATNETICQ + F + + EKKEKEIPLL FPPS S GFFDSG FP GNKWNTVGV
Sbjct: 61 ILEATNETICQFFGILFLEEKNIEKKEKEIPLLDFPPSESSGFFDSGGFPAGNKWNTVGV 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
PEIRSPHNGIYAIQ QDTSMLPLYRKGDILILN+AIQVNCGDR+LIKP GDI
Sbjct: 121 PEIRSPHNGIYAIQ-------IQDTSMLPLYRKGDILILNAAIQVNCGDRVLIKPHEGDI 173
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AKVLIS+RGRSIDLMSLNCCYPVDT++ SDIEWIA+ILWASQ
Sbjct: 174 EAKVLISQRGRSIDLMSLNCCYPVDTIDASDIEWIAKILWASQ 216
>gi|227820746|ref|YP_002824716.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234]
gi|227339745|gb|ACP23963.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234]
Length = 217
Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats.
Identities = 109/224 (48%), Positives = 143/224 (63%), Gaps = 10/224 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI K+L
Sbjct: 1 MLSHDSIWRAIDALAERHQLSPSGLARRAGLDPTSFNKSKRQSPDGRDRWPSTESISKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
AT TI Q + L S + + IPL+ F +G+GGFFD G FP G W+ V
Sbjct: 61 EATGATIDQFMALLQSGSGPSSRTGLPAAGIPLIGFAQAGAGGFFDDGGFPVGQGWDEVD 120
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P +YA++ Q SMLPLYR GD+LI++ V GDR+++K G+
Sbjct: 121 FPVAAQSKASVYALE-------VQGDSMLPLYRDGDVLIVDPGASVRRGDRVVLKSCEGE 173
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AK+L + R ++L+SLN +P + EM D+EWIARI+WASQ
Sbjct: 174 VMAKILARQTSRGVELLSLNPDHPNRSFEMKDVEWIARIVWASQ 217
>gi|15887830|ref|NP_353511.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str.
C58]
gi|15155410|gb|AAK86296.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str.
C58]
Length = 216
Score = 318 bits (814), Expect = 5e-85, Method: Composition-based stats.
Identities = 111/223 (49%), Positives = 146/223 (65%), Gaps = 9/223 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH+ IW AID +AERH LTPS LA++AGLDPTSFNKSKRFG +GR RWPSTES+ K+L
Sbjct: 1 MLSHETIWSAIDTLAERHQLTPSALAKRAGLDPTSFNKSKRFGPDGRKRWPSTESVSKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
AT ++ Q F +T + IPLL F +GSGGFFD G FP G W+ V
Sbjct: 61 EATGASVDQFFGYAFGRAQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEF 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P G+YA++ Q SM+PLYR GDILI+ V GDR+++K R G++
Sbjct: 121 PSSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAPVRRGDRVVLKSRDGEV 173
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AKVL + ++I+L+SLN +P + +M+D+EWIARI+WASQ
Sbjct: 174 MAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216
>gi|158422012|ref|YP_001523304.1| S24 family peptidase [Azorhizobium caulinodans ORS 571]
gi|158328901|dbj|BAF86386.1| peptidase family S24 protein [Azorhizobium caulinodans ORS 571]
Length = 222
Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats.
Identities = 96/231 (41%), Positives = 141/231 (61%), Gaps = 19/231 (8%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+H +IW AIDR+AE + L+ SGLA++AGLD T+FN+SKR +GR RWPSTES+ KIL
Sbjct: 1 MLTHGQIWTAIDRLAEANGLSASGLAKRAGLDSTAFNRSKRITSDGRPRWPSTESVSKIL 60
Query: 63 AATNETICQLLDLPFSD----------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
+ATN ++ L L + + ++ IP + +G GGFFD FP G
Sbjct: 61 SATNTSMRAFLALLEGEDIGPSGFSEEPAPPFRPQRAIPHIGLAQAGDGGFFDDAGFPVG 120
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
+ W+ + PE+ H YA++ SMLPLYR GD+++++ A V GDR++
Sbjct: 121 SGWDEILFPEVEDEH--AYALE-------ISGDSMLPLYRPGDLVVVSPAASVRKGDRVV 171
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+K R G+++AK L+ R R+++L SLN Y T+ +D+ WIARI+WASQ
Sbjct: 172 VKTRDGEVLAKELVRRTARTVELRSLNPEYEGRTLAATDVLWIARIIWASQ 222
>gi|222147460|ref|YP_002548417.1| bacteriophage repressor protein [Agrobacterium vitis S4]
gi|221734450|gb|ACM35413.1| bacteriophage repressor protein [Agrobacterium vitis S4]
Length = 224
Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats.
Identities = 112/233 (48%), Positives = 145/233 (62%), Gaps = 21/233 (9%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH+ IW AIDR+AE+++LTPSGLARKAGLDPTSFNKSKR G +GR RWPSTESI K+L
Sbjct: 1 MLSHETIWNAIDRLAEQYHLTPSGLARKAGLDPTSFNKSKRVGPDGRMRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTT------------EKKEKEIPLLYFPPSGSGGFFDSGVFP 110
AT I Q + L +D + IPLL +GSGGFFD G FP
Sbjct: 61 EATGARIDQFVTLISNDNHQVNAVHETLPDGNFPPQIGTIPLLGLAQAGSGGFFDDGGFP 120
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G W+ V +P P G+YA++ Q SM PLYR GDILI+ V GDR
Sbjct: 121 AGQGWDLVDLPTSAKP--GVYALE-------IQGDSMKPLYRDGDILIVEPGAPVRRGDR 171
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++K G+++AKVL + R++DL+S+N +P ++M D+EWIARI+W SQ
Sbjct: 172 VVVKTCDGEVMAKVLGRQTARTVDLISINPDHPNRVLDMQDVEWIARIIWVSQ 224
>gi|325291874|ref|YP_004277738.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3]
gi|325059727|gb|ADY63418.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3]
Length = 216
Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats.
Identities = 110/223 (49%), Positives = 146/223 (65%), Gaps = 9/223 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH+ IW AID +A+RH LTPS LA++AGLD TSFNKSKRFG +GR RWPSTES+ K+L
Sbjct: 1 MLSHETIWSAIDTLAKRHQLTPSALAKRAGLDSTSFNKSKRFGPDGRKRWPSTESVSKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
AT ++ Q F +T + IPLL F +GSGGFFD G FP G W+ V
Sbjct: 61 EATGASVDQFFGYAFGRTQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEF 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P G+YA++ Q SM+PLYR GDILI+ QV GDR+++K R G++
Sbjct: 121 PSSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAQVRRGDRVVLKSRDGEV 173
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AKVL + ++I+L+SLN +P + +M+D+EWIARI+WASQ
Sbjct: 174 MAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216
>gi|15964281|ref|NP_384634.1| putative transcription regulator protein [Sinorhizobium meliloti
1021]
gi|307307018|ref|ZP_07586757.1| putative phage repressor [Sinorhizobium meliloti BL225C]
gi|307320672|ref|ZP_07600085.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|15073458|emb|CAC45100.1| Transcriptional regulator [Sinorhizobium meliloti 1021]
gi|306893707|gb|EFN24480.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|306901958|gb|EFN32557.1| putative phage repressor [Sinorhizobium meliloti BL225C]
Length = 218
Score = 314 bits (806), Expect = 4e-84, Method: Composition-based stats.
Identities = 113/225 (50%), Positives = 149/225 (66%), Gaps = 11/225 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI KIL
Sbjct: 1 MLSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRQSTDGRDRWPSTESIAKIL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
AT ++ Q L L + +E+++ IPL+ F +G+GGFFD G FP G W+T+
Sbjct: 61 HATGASVDQFLALMEPNAAGSEREDASAAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDTI 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
P G YA++ Q SMLPLYR GD+LI++ + QV DR+++K R G
Sbjct: 121 EFPTPERRQGGTYALE-------VQGDSMLPLYRDGDVLIVDPSAQVRRNDRVVVKTRGG 173
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AKVL + R I+L+SLN +P EM+D+EWIARI+WASQ
Sbjct: 174 EVMAKVLARQTPRGIELVSLNPDHPNRNFEMNDVEWIARIIWASQ 218
>gi|222084796|ref|YP_002543325.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
gi|221722244|gb|ACM25400.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
Length = 221
Score = 314 bits (806), Expect = 4e-84, Method: Composition-based stats.
Identities = 111/228 (48%), Positives = 149/228 (65%), Gaps = 14/228 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AID++AER+ LTPSGLAR+AGLDPTSFNKSKR G +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWSAIDKLAERYALTPSGLARRAGLDPTSFNKSKRLGQDGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGR-------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
AT ++ Q L + R + IPLL F +GSGGFFD G FP G W
Sbjct: 61 GATGASMEQFLGILRPVERGDGNADHASSPPASSIPLLGFAQAGSGGFFDDGGFPAGQGW 120
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P G+YA++ Q SMLPLYR GD+LI+ Q+ DR+++K
Sbjct: 121 DMVEFPAAPGQKGGVYALE-------VQGESMLPLYRDGDVLIVEPGAQIRRSDRVVVKT 173
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AKVL+ + +SI+L+SLN +P + +++D+EWIARI+WASQ
Sbjct: 174 REGEVMAKVLLRQSAKSIELLSLNPEHPNRSFDLADVEWIARIIWASQ 221
>gi|83859576|ref|ZP_00953096.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633]
gi|83851935|gb|EAP89789.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633]
Length = 210
Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats.
Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 15/224 (6%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIF 59
M +H +IW IDR+A R LTPSGLAR+AGLDPT+FN SKR +G + RWPSTES+
Sbjct: 1 MPMLTHAQIWSGIDRLAHRAGLTPSGLARRAGLDPTTFNPSKRTSADGAKPRWPSTESLA 60
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
K L AT + L + +PLL F +G G+FD FPTG W +
Sbjct: 61 KALEATRVSFDDFAALAMGHTA-----GRSVPLLGFAQAGDHGYFDDAGFPTGEGWEDIR 115
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P G YA++ SM P+YR GD ++++ GDR+++K R+G+
Sbjct: 116 FP--GDEGEGAYALE-------ISGESMSPVYRHGDRIVVSPDAPPRRGDRVVVKTRSGE 166
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AK L S++L+SLN Y + D+ W+ARI+WASQ
Sbjct: 167 VMAKELGRVTAESVELISLNPSYDNRILSTRDLVWMARIVWASQ 210
>gi|188581313|ref|YP_001924758.1| phage repressor [Methylobacterium populi BJ001]
gi|179344811|gb|ACB80223.1| putative phage repressor [Methylobacterium populi BJ001]
Length = 210
Score = 311 bits (796), Expect = 7e-83, Method: Composition-based stats.
Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 13/222 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
+AT ++ L L S + +PL+ +GSG F PTG W+ + P
Sbjct: 61 SATGASLDDFLHLVDSGQASART---MVPLIGLTQAGSGRLFTEEGIPTGGPGWDEIEFP 117
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ H +A++ Q SMLPLYR GD+LI+ + GDR++ + G++V
Sbjct: 118 DLGGDH--AFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVV 168
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AK L R R+I+L SLN + V ++++ W+AR++W Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210
>gi|218530341|ref|YP_002421157.1| phage repressor [Methylobacterium chloromethanicum CM4]
gi|240138699|ref|YP_002963171.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1]
gi|218522644|gb|ACK83229.1| putative phage repressor [Methylobacterium chloromethanicum CM4]
gi|240008668|gb|ACS39894.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1]
Length = 210
Score = 310 bits (795), Expect = 8e-83, Method: Composition-based stats.
Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 13/222 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
AAT ++ L L S T +PL+ +GSG F+ PTG W+ + P
Sbjct: 61 AATGASLDDFLHLVDSGQGPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ +A++ Q SMLPLYR GD+LI+ + GDR++ + G+++
Sbjct: 118 DLGGDR--AFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVL 168
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AK L R R+I+L SLN + V ++++ W+AR++W Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210
>gi|163851531|ref|YP_001639574.1| peptidase S24/S26 domain-containing protein [Methylobacterium
extorquens PA1]
gi|163663136|gb|ABY30503.1| peptidase S24 and S26 domain protein [Methylobacterium extorquens
PA1]
Length = 210
Score = 310 bits (794), Expect = 9e-83, Method: Composition-based stats.
Identities = 93/222 (41%), Positives = 132/222 (59%), Gaps = 13/222 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
AAT ++ L L S T +PL+ +GSG F+ PTG W+ + P
Sbjct: 61 AATGASLDDFLHLVDSGQGPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ +A++ Q SMLPLYR GD+LI+ + GDR++ + G+++
Sbjct: 118 DLGGDR--AFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVL 168
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AK L R R+I+L SLN + V ++D+ W+AR++W Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLADVAWMARVMWVRQ 210
>gi|254561298|ref|YP_003068393.1| LexA/Signal peptidase [Methylobacterium extorquens DM4]
gi|254268576|emb|CAX24533.1| putative LexA/Signal peptidase [Methylobacterium extorquens DM4]
Length = 210
Score = 310 bits (794), Expect = 9e-83, Method: Composition-based stats.
Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 13/222 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
AAT ++ L L S T +PL+ +GSG F+ PTG W+ + P
Sbjct: 61 AATGASLDDFLHLVDSGQAPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ +A++ Q SMLPLYR GD+LI+ + GDR++ + G+++
Sbjct: 118 DLGGDR--AFALE-------VQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVL 168
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AK L R R+I+L SLN + V ++++ W+AR++W Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210
>gi|170746983|ref|YP_001753243.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831]
gi|170653505|gb|ACB22560.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831]
Length = 210
Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats.
Identities = 86/222 (38%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTES+ K+L
Sbjct: 1 MLSHEQIWNAIDRLAERHGYSASGLARRAGLDATSFNRSKRVGADGRKRWPSTESVSKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
AAT ++ + L L + +PL+ +G+G F PTG W + P
Sbjct: 61 AATGSSLDEFLRLIEAREIPART---MVPLIGLTQAGAGRLFTDEGMPTGGAGWEEIEFP 117
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ +A++ Q SMLPL+R GD+LI++ V GDR++++ G+++
Sbjct: 118 DLG--EERAFALE-------IQGDSMLPLFRDGDVLIVSPTASVRKGDRVVVRLHGGEVL 168
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AK L R R+++L SLN + + + ++ W+AR++W Q
Sbjct: 169 AKELRRRTARTVELASLNPEHEDRVLNLGEVAWMARVMWVRQ 210
>gi|86751722|ref|YP_488218.1| putative phage repressor [Rhodopseudomonas palustris HaA2]
gi|86574750|gb|ABD09307.1| putative phage repressor [Rhodopseudomonas palustris HaA2]
Length = 210
Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats.
Identities = 98/223 (43%), Positives = 139/223 (62%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAATN I + L + + +PLL +G+GGFFD G FP G W+ +G+
Sbjct: 61 ALAATNTAIDTFVQLITDR----PRVVQSVPLLGLAQAGAGGFFDDGGFPAGKGWDEIGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P I H YA++ SM P YR GDI++++ + GDR+++K +G++
Sbjct: 117 PSINDEH--AYALE-------ISGESMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTSGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + ++L SLN +P T+ +D+EWIARI+WASQ
Sbjct: 168 MVKELKRRTTKIVELASLNPSHPDRTLAPADVEWIARIVWASQ 210
>gi|23015760|ref|ZP_00055528.1| COG2932: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 211
Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats.
Identities = 91/221 (41%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
H IW AID +A H LT S LARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L
Sbjct: 1 MLKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRVTREGKPRWPSTESVAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT T+ + D + IPL+ F +G G+FD +P G W+ + PE
Sbjct: 61 EATGATMTAFVGYIE-DTAQARQTANTIPLIGFAQAGDCGYFDDAGYPVGGSWDEIPFPE 119
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
I PH YA++ SM PLYR GD++I++ A V GDR++++ G+++
Sbjct: 120 IGDPH--AYALE-------VSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVMV 170
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L+ + + I+L S+N +P ++ ++ WIARILW+SQ
Sbjct: 171 KQLVRQTAKRIELASINPAHPGRSLATEEVAWIARILWSSQ 211
>gi|225629264|ref|ZP_03787297.1| Repressor protein C [Brucella ceti str. Cudo]
gi|237816924|ref|ZP_04595916.1| Repressor protein C [Brucella abortus str. 2308 A]
gi|225615760|gb|EEH12809.1| Repressor protein C [Brucella ceti str. Cudo]
gi|237787737|gb|EEP61953.1| Repressor protein C [Brucella abortus str. 2308 A]
Length = 234
Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats.
Identities = 103/228 (45%), Positives = 136/228 (59%), Gaps = 15/228 (6%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 16 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 75
Query: 62 LAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+ AT T + L IPLL +G+GG+FD FP G W
Sbjct: 76 MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 135
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 136 DIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 186
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 187 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 234
>gi|265999054|ref|ZP_05464836.2| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
gi|263092030|gb|EEZ16327.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
Length = 223
Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats.
Identities = 103/228 (45%), Positives = 137/228 (60%), Gaps = 15/228 (6%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64
Query: 62 LAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+ AT T + + L IPLL +G+GG+FD FP G W
Sbjct: 65 MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 124
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 125 DIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223
>gi|189022624|ref|YP_001932365.1| Peptidase family S24 [Brucella abortus S19]
gi|260544608|ref|ZP_05820429.1| peptidase family S24 [Brucella abortus NCTC 8038]
gi|261756989|ref|ZP_06000698.1| peptidase family S24 [Brucella sp. F5/99]
gi|306839063|ref|ZP_07471883.1| Peptidase family S24 [Brucella sp. NF 2653]
gi|306841676|ref|ZP_07474363.1| Peptidase family S24 [Brucella sp. BO2]
gi|189021198|gb|ACD73919.1| Peptidase family S24 [Brucella abortus S19]
gi|260097879|gb|EEW81753.1| peptidase family S24 [Brucella abortus NCTC 8038]
gi|261736973|gb|EEY24969.1| peptidase family S24 [Brucella sp. F5/99]
gi|306288206|gb|EFM59590.1| Peptidase family S24 [Brucella sp. BO2]
gi|306405886|gb|EFM62145.1| Peptidase family S24 [Brucella sp. NF 2653]
Length = 223
Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats.
Identities = 103/228 (45%), Positives = 136/228 (59%), Gaps = 15/228 (6%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64
Query: 62 LAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+ AT T + L IPLL +G+GG+FD FP G W
Sbjct: 65 MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 124
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 125 DIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223
>gi|254712567|ref|ZP_05174378.1| Peptidase family S24 [Brucella ceti M644/93/1]
gi|254715639|ref|ZP_05177450.1| Peptidase family S24 [Brucella ceti M13/05/1]
gi|261217388|ref|ZP_05931669.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320261|ref|ZP_05959458.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922477|gb|EEX89045.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292951|gb|EEX96447.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 218
Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats.
Identities = 103/227 (45%), Positives = 136/227 (59%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + L IPLL +G+GG+FD FPTG W+
Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPTGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|225686559|ref|YP_002734531.1| Repressor protein C [Brucella melitensis ATCC 23457]
gi|256111295|ref|ZP_05452321.1| DNA-binding protein RDGA [Brucella melitensis bv. 3 str. Ether]
gi|265992801|ref|ZP_06105358.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|225642664|gb|ACO02577.1| Repressor protein C [Brucella melitensis ATCC 23457]
gi|262763671|gb|EEZ09703.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|326410945|gb|ADZ68009.1| Repressor protein C [Brucella melitensis M28]
gi|326554236|gb|ADZ88875.1| Repressor protein C [Brucella melitensis M5-90]
Length = 218
Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats.
Identities = 102/227 (44%), Positives = 136/227 (59%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + + L IPLL +G+GG+FD FP G W+
Sbjct: 61 EATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|260564858|ref|ZP_05835343.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M]
gi|260152501|gb|EEW87594.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M]
Length = 223
Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats.
Identities = 103/228 (45%), Positives = 137/228 (60%), Gaps = 15/228 (6%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+
Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64
Query: 62 LAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+ AT T + + L IPLL +G+GG+FD FP G W
Sbjct: 65 MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAKAGAGGYFDDAGFPAGQGW 124
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 125 DIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223
>gi|23500526|ref|NP_699966.1| S24 family peptidase [Brucella suis 1330]
gi|62317372|ref|YP_223225.1| S24 family peptidase [Brucella abortus bv. 1 str. 9-941]
gi|83269348|ref|YP_418639.1| S24 family peptidase [Brucella melitensis biovar Abortus 2308]
gi|148558376|ref|YP_001257738.1| S24 family peptidase [Brucella ovis ATCC 25840]
gi|161620851|ref|YP_001594737.1| repressor protein C [Brucella canis ATCC 23365]
gi|163844918|ref|YP_001622573.1| hypothetical protein BSUIS_B0784 [Brucella suis ATCC 23445]
gi|254695818|ref|ZP_05157646.1| Peptidase family S24 [Brucella abortus bv. 3 str. Tulya]
gi|254698652|ref|ZP_05160480.1| Peptidase family S24 [Brucella abortus bv. 2 str. 86/8/59]
gi|254700006|ref|ZP_05161834.1| Peptidase family S24 [Brucella suis bv. 5 str. 513]
gi|254703127|ref|ZP_05164955.1| Peptidase family S24 [Brucella suis bv. 3 str. 686]
gi|254705728|ref|ZP_05167556.1| Peptidase family S24 [Brucella pinnipedialis M163/99/10]
gi|254720098|ref|ZP_05181909.1| Peptidase family S24 [Brucella sp. 83/13]
gi|254732099|ref|ZP_05190677.1| Peptidase family S24 [Brucella abortus bv. 4 str. 292]
gi|256015557|ref|YP_003105566.1| peptidase, S24 family [Brucella microti CCM 4915]
gi|256157535|ref|ZP_05455453.1| Peptidase family S24 [Brucella ceti M490/95/1]
gi|256253490|ref|ZP_05459026.1| Peptidase family S24 [Brucella ceti B1/94]
gi|256256056|ref|ZP_05461592.1| Peptidase family S24 [Brucella abortus bv. 9 str. C68]
gi|260167569|ref|ZP_05754380.1| Peptidase family S24 [Brucella sp. F5/99]
gi|260759885|ref|ZP_05872233.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260763123|ref|ZP_05875455.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882275|ref|ZP_05893889.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261216238|ref|ZP_05930519.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|261220617|ref|ZP_05934898.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313149|ref|ZP_05952346.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261750489|ref|ZP_05994198.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261753747|ref|ZP_05997456.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|265985104|ref|ZP_06097839.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265996036|ref|ZP_06108593.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|297249410|ref|ZP_06933111.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196]
gi|306846010|ref|ZP_07478577.1| Peptidase family S24 [Brucella sp. BO1]
gi|23464158|gb|AAN33971.1| peptidase, S24 family [Brucella suis 1330]
gi|62197565|gb|AAX75864.1| peptidase, S24 family [Brucella abortus bv. 1 str. 9-941]
gi|82939622|emb|CAJ12611.1| Peptidase family S24:Peptidase S24, C-terminal [Brucella melitensis
biovar Abortus 2308]
gi|148369661|gb|ABQ62533.1| peptidase, S24 family [Brucella ovis ATCC 25840]
gi|161337662|gb|ABX63966.1| Repressor protein C [Brucella canis ATCC 23365]
gi|163675641|gb|ABY39751.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|255998217|gb|ACU49904.1| peptidase, S24 family [Brucella microti CCM 4915]
gi|260670203|gb|EEX57143.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673544|gb|EEX60365.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260871803|gb|EEX78872.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917845|gb|EEX84706.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260919201|gb|EEX85854.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261302175|gb|EEY05672.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261740242|gb|EEY28168.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261743500|gb|EEY31426.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262550333|gb|EEZ06494.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264663696|gb|EEZ33957.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|297173279|gb|EFH32643.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196]
gi|306273645|gb|EFM55490.1| Peptidase family S24 [Brucella sp. BO1]
Length = 218
Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats.
Identities = 102/227 (44%), Positives = 135/227 (59%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + L IPLL +G+GG+FD FP G W+
Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|17988843|ref|NP_541476.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. 16M]
gi|256043668|ref|ZP_05446593.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. Rev.1]
gi|265990088|ref|ZP_06102645.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|17984666|gb|AAL53740.1| DNA-binding protein rdga [Brucella melitensis bv. 1 str. 16M]
gi|263000757|gb|EEZ13447.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 218
Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats.
Identities = 102/227 (44%), Positives = 136/227 (59%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + + L IPLL +G+GG+FD FP G W+
Sbjct: 61 EATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAKAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|110632380|ref|YP_672588.1| putative phage repressor [Mesorhizobium sp. BNC1]
gi|110283364|gb|ABG61423.1| putative phage repressor [Chelativorans sp. BNC1]
Length = 214
Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats.
Identities = 94/223 (42%), Positives = 138/223 (61%), Gaps = 11/223 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH+K+W AID +A RH+L+ SGLARKAGLD T+FN+SKR +GR RWPSTES+ KI+
Sbjct: 1 MLSHEKVWAAIDALAARHSLSASGLARKAGLDSTAFNRSKRHSPDGRPRWPSTESLAKIM 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
AT T+ + L + +K I PL+ F +G+GG+F FP G W V +
Sbjct: 61 DATGVTLGEFTALIEEMAESGRRKPGRISVPLIGFAQAGAGGYFTDAGFPVGQGWEQVEL 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P S YA++ Q SMLPLYR GD+L++ + V GDR++++ G++
Sbjct: 121 PGQVS--EAAYALE-------VQGDSMLPLYRNGDVLVVEPSAPVRRGDRVVVRTLDGEV 171
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AK+L+ + R ++L+SLN +P + +++WIARI+WASQ
Sbjct: 172 MAKILLRQTSRQMELLSLNPDHPNRVLGHEEVDWIARIVWASQ 214
>gi|91975266|ref|YP_567925.1| putative phage repressor [Rhodopseudomonas palustris BisB5]
gi|91681722|gb|ABE38024.1| peptidase S24, S26A and S26B [Rhodopseudomonas palustris BisB5]
Length = 210
Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats.
Identities = 95/223 (42%), Positives = 135/223 (60%), Gaps = 13/223 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M +H +IW A+DR+AER L+ SGLA+++GLDPT+FNKSKR +GR RWPSTES+ K
Sbjct: 1 MHMLTHDQIWTALDRLAERAGLSASGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAK 60
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LAATN I + L + + +PLL +G+GGFFD G FP G W VG+
Sbjct: 61 ALAATNTAIDTFVQLITDR----PRVVQSVPLLGLAQAGAGGFFDDGGFPAGKGWEEVGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + H YA++ SM P YR GDI++++ + GDR+++K G++
Sbjct: 117 PSVNDEH--AYALE-------ISGDSMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTGGEV 167
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L R + ++L SLN + T+ +D+EWIARI+WASQ
Sbjct: 168 MVKELKRRTTKIVELASLNPSHADRTLAPADVEWIARIVWASQ 210
>gi|83313328|ref|YP_423592.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82948169|dbj|BAE53033.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 223
Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats.
Identities = 90/223 (40%), Positives = 130/223 (58%), Gaps = 10/223 (4%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
+ H IW AID +A H LT S LARKAGLDPT+FNKSKR EG+ RWPSTES+ K
Sbjct: 11 LPMLKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRITREGKPRWPSTESVAK 70
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+L AT ++ + D + IPL+ F +G G+FD +P G W+ +
Sbjct: 71 VLEATGASMTAFVAYIE-DLAQPHNQASTIPLVGFAQAGDRGYFDDAGYPVGGSWDEIPF 129
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
PEI PH YA++ SM PLYR GD++I++ A V GDR++++ G++
Sbjct: 130 PEIGDPH--AYALE-------VSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEV 180
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ K L+ + R I+L S+N +P ++ ++ W+ARILW+SQ
Sbjct: 181 MVKQLLRQTARRIELGSINPAHPGRSLATEEVAWMARILWSSQ 223
>gi|256059031|ref|ZP_05449240.1| Peptidase family S24 [Brucella neotomae 5K33]
gi|261322976|ref|ZP_05962173.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261298956|gb|EEY02453.1| conserved hypothetical protein [Brucella neotomae 5K33]
Length = 218
Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats.
Identities = 101/227 (44%), Positives = 135/227 (59%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AER++L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERYSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + L IPLL +G+GG+FD FP G W+
Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218
>gi|254690871|ref|ZP_05154125.1| Peptidase family S24 [Brucella abortus bv. 6 str. 870]
gi|260756453|ref|ZP_05868801.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260676561|gb|EEX63382.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
Length = 218
Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats.
Identities = 101/227 (44%), Positives = 135/227 (59%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++
Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60
Query: 63 AATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT T + L IPLL +G+GG+FD FP G W+
Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 121 IVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SL+ +P E DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLDPEHPNRIFESKDIEWIARILWASQ 218
>gi|328544878|ref|YP_004304987.1| peptidase S24-like domain protein [polymorphum gilvum SL003B-26A1]
gi|326414620|gb|ADZ71683.1| Peptidase S24-like domain protein [Polymorphum gilvum SL003B-26A1]
Length = 215
Score = 298 bits (762), Expect = 5e-79, Method: Composition-based stats.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 12/224 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH+++W AID +A R L+PSGLAR+AGLDPT+FN SKR +GR RWPSTES+ K+L
Sbjct: 1 MLSHERVWAAIDALATRKGLSPSGLARRAGLDPTTFNPSKRIAGDGRPRWPSTESLAKVL 60
Query: 63 AATNETICQLLDLPFS---DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
AT + + + L D +P G+FD P G W+ +
Sbjct: 61 EATGAPLAEFVALAAPLETDSAPPATSPMTVPFAGLDRVACEGYFDPTGNPIGRNWDEIP 120
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P++R +YA++ ++LP+YR GDIL++ + V GDR+++K ++G+
Sbjct: 121 FPDLRG--EILYALE-------VSGNALLPVYRDGDILVVAPDVPVRRGDRVIVKVKSGE 171
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++ ++L R R+++L SL V E+ IEWIARI+WASQ
Sbjct: 172 VIIRLLHRRTARTVELHSLAPSGTVHQCELDSIEWIARIVWASQ 215
>gi|114799918|ref|YP_759340.1| S24 family peptidase [Hyphomonas neptunium ATCC 15444]
gi|114740092|gb|ABI78217.1| peptidase, S24 family [Hyphomonas neptunium ATCC 15444]
Length = 205
Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats.
Identities = 88/220 (40%), Positives = 119/220 (54%), Gaps = 15/220 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
HK IW +D +A H LT S LA++AGLDPTSFN SKR +GR RWPSTES+ ++L
Sbjct: 1 MQHKDIWRGLDLLAAHHGLTASALAKRAGLDPTSFNPSKREAADGRPRWPSTESLARVLD 60
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
A L ++ PL+ F +G GFFD FP G W V P +
Sbjct: 61 AVGAGFDDFAALVEG------RRGGSAPLIGFAQAGQDGFFDDAGFPVGAGWEEVRFPGL 114
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ +YA++ SM P YR GD +I+ +V GDR++ K G+++AK
Sbjct: 115 GA--ETVYALE-------ISGDSMEPAYRAGDRIIVAPGAEVKPGDRVVAKTVAGEVMAK 165
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
VL + R I+L SLN YP + S++ W+ARILWASQ
Sbjct: 166 VLARKNTRLIELASLNPAYPAREFKPSEVAWLARILWASQ 205
>gi|315499624|ref|YP_004088427.1| phage repressor [Asticcacaulis excentricus CB 48]
gi|315417636|gb|ADU14276.1| putative phage repressor [Asticcacaulis excentricus CB 48]
Length = 209
Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats.
Identities = 92/224 (41%), Positives = 129/224 (57%), Gaps = 19/224 (8%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFK 60
S SH +IW AIDR+A +PSGLAR AGLDPT+FNKSKR E R RWPSTES+ K
Sbjct: 2 SLSHAQIWNAIDRLARNLGTSPSGLARLAGLDPTAFNKSKRQSTEDPPRPRWPSTESLAK 61
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+L AT ++ L K +PL+ F +G+ G FD FP G W+ +G+
Sbjct: 62 VLDATGQSFPDFAALTEP-----RPVPKGVPLIGFAQAGNDGLFDDAGFPVGQGWDEIGL 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGD 179
P G+YA++ SMLPLYR GD +I++ Q + GDR+++K G+
Sbjct: 117 PA----GEGLYALE-------ISGDSMLPLYRDGDRIIVDPLRQNLRRGDRVVVKTSEGE 165
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AK L+ + ++L SLN + +E S + W+ARI+WASQ
Sbjct: 166 VMAKELVRLTEKQVELRSLNPDFSNRVLERSQVTWLARIVWASQ 209
>gi|209966574|ref|YP_002299489.1| peptidase family S24, putative [Rhodospirillum centenum SW]
gi|209960040|gb|ACJ00677.1| peptidase family S24, putative [Rhodospirillum centenum SW]
Length = 214
Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats.
Identities = 91/223 (40%), Positives = 136/223 (60%), Gaps = 11/223 (4%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
H +IW AIDR+A RH L+ SGLA++ GLDPT+FN+SKR +G+ RWPSTES+ K+L
Sbjct: 1 MIKHAEIWRAIDRLAARHGLSASGLAKRGGLDPTTFNRSKRVTHDGKLRWPSTESLAKVL 60
Query: 63 AATNETICQLLDLPF--SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
ATN T L+ L G+ + +P++ + +GS GFFD +P GN W+ +
Sbjct: 61 EATNSTFADLVALAGDGPVGQAAPVHVQRVPVIGYAQAGSDGFFDDAGYPVGNGWDELEF 120
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + P+ YA++ SM PLYR GD++I++ V GDR++++ R G++
Sbjct: 121 PHLGDPN--AYALE-------ISGDSMEPLYRDGDVIIVSPGASVRRGDRVVVRTREGEV 171
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AK L ++L SLN +P T+ M+++ W+ARILWASQ
Sbjct: 172 MAKQLARLTANRLELQSLNKAHPDRTLAMTEVAWMARILWASQ 214
>gi|116250339|ref|YP_766177.1| phage-related transcriptional regulator [Rhizobium leguminosarum
bv. viciae 3841]
gi|115254987|emb|CAK06061.1| putative phage-related transcriptional regulator [Rhizobium
leguminosarum bv. viciae 3841]
Length = 225
Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats.
Identities = 114/232 (49%), Positives = 153/232 (65%), Gaps = 18/232 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEK-----------EIPLLYFPPSGSGGFFDSGVFPT 111
AT ++ Q L D +E++ + IPLL F +G+GGFFD G FP
Sbjct: 61 DATGASMEQFLAFMRPDAGPSEQQARQQENAFQPQGGSIPLLGFAQAGAGGFFDDGGFPA 120
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR+
Sbjct: 121 GQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++ G+++AKVL+ + RSI+L+SLN +P T+E+SD++WIARI+WASQ
Sbjct: 174 VVRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225
>gi|241202972|ref|YP_002974068.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856862|gb|ACS54529.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 225
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 112/232 (48%), Positives = 149/232 (64%), Gaps = 18/232 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTT-----------EKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
AT ++ Q + D + + IPLL F +G+GGFFD G FP
Sbjct: 61 DATGASMEQFMAFMRPDAGLSKQPAGQQENAFPPQGGSIPLLGFAQAGAGGFFDDGGFPA 120
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G W+ V P S G+YA++ Q SM+PLYR GD+LI+ QV DR+
Sbjct: 121 GQGWDVVEFPAAPSQKAGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++ G+++AKVL+ + RSI+L+SLN +P T+E+SD++WIARI+WASQ
Sbjct: 174 VVRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225
>gi|218671565|ref|ZP_03521235.1| putative phage-related transcriptional regulator protein [Rhizobium
etli GR56]
Length = 223
Score = 291 bits (744), Expect = 6e-77, Method: Composition-based stats.
Identities = 116/230 (50%), Positives = 151/230 (65%), Gaps = 16/230 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDG---------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
AT ++ Q L R IPLL F +G+GGFFD G FP G
Sbjct: 61 DATGASMEQFLAFMRPGANSSAELPGERAKPPHGGAIPLLGFAQAGAGGFFDDGGFPAGQ 120
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR+++
Sbjct: 121 GWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVV 173
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 174 RTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 223
>gi|209547798|ref|YP_002279715.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533554|gb|ACI53489.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 225
Score = 291 bits (744), Expect = 7e-77, Method: Composition-based stats.
Identities = 112/232 (48%), Positives = 148/232 (63%), Gaps = 18/232 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH +IW AIDR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHDQIWGAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTT-----------EKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
AT ++ Q L D + + IPLL F +G+GGFFD G FP
Sbjct: 61 DATGASVEQFLAFLQPDAGFSKRPAGQSDGAFPPQGSSIPLLGFAQAGAGGFFDDGGFPA 120
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G W+ V P + + +YA++ Q SM+PLYR GD+LI+ QV DR+
Sbjct: 121 GQGWDVVEFPAAPAQKSAVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++ G+++AKVL+ + RSI+LMSLN +P T+E+SD++WIARI+WASQ
Sbjct: 174 VVRTCEGEVMAKVLLRQSPRSIELMSLNPEHPNRTLELSDVDWIARIIWASQ 225
>gi|86356189|ref|YP_468081.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
gi|86280291|gb|ABC89354.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
Length = 223
Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats.
Identities = 115/230 (50%), Positives = 151/230 (65%), Gaps = 16/230 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SHK+IWEAIDR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHKQIWEAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFS---------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
AT ++ Q L R IPLL F +G+GGFFD G FP G+
Sbjct: 61 DATGASMEQFLAFMQPASSSSGERIGERAGPSPGGAIPLLGFAQAGAGGFFDDGGFPAGH 120
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR+++
Sbjct: 121 GWDVVEFPPKPSQRSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVV 173
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ TG+++AKVL+ + RSI+LMSLN +P T++++D++WIARI+WASQ
Sbjct: 174 RTCTGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLADVDWIARIIWASQ 223
>gi|167644106|ref|YP_001681769.1| putative phage repressor [Caulobacter sp. K31]
gi|167346536|gb|ABZ69271.1| putative phage repressor [Caulobacter sp. K31]
Length = 219
Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 16/227 (7%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M+ SH +IW AID +A+R +++PS +A+ AGLDPTSFN+SKR + R RWPSTES+ K
Sbjct: 5 MSPLSHTEIWTAIDALAKRFDMSPSAMAKMAGLDPTSFNRSKRGDGDARPRWPSTESLAK 64
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+L AT + L R + +PL+ F +G+ G FD P G W+ +
Sbjct: 65 VLEATGVGFSEFAAL---TERVRPLNPRVVPLIGFAQAGAEGVFDETGAPIGAGWDEIDF 121
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P + G+YA++ ++ P++R GD ++++ + GDR++++ G++
Sbjct: 122 PGLGD--EGVYALE-------ITGDALAPVFRDGDRILVSPSAPPRRGDRVVVRTAGGEL 172
Query: 181 VAKVLISRRGRSIDLMSLN----CCYPVDTVEMSDIEWIARILWASQ 223
+ K L RS++L LN T+++ ++ WIARILWASQ
Sbjct: 173 LVKELARVTARSVELAPLNRLDGRDGGDRTLDLGEVVWIARILWASQ 219
>gi|114704909|ref|ZP_01437817.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi
HTCC2506]
gi|114539694|gb|EAU42814.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi
HTCC2506]
Length = 216
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 96/225 (42%), Positives = 141/225 (62%), Gaps = 13/225 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH +IW AID +A+R+ LTPSGLARKAGLDPT+FNKSKR +GR RWPSTES+ KI
Sbjct: 1 MFSHDEIWSAIDALAKRNGLTPSGLARKAGLDPTTFNKSKRQSTDGRPRWPSTESLSKIF 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
A N + L D ++ K + +PLL +G GGFFD FP G+ W+ +
Sbjct: 61 EAVNSSFGDFAQLVSGDDAESDSKVRSKPVSVPLLGLAEAGGGGFFDDAGFPAGHGWDEI 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+P+ + +YA++ SM PLYR+GD ++++ V GDR+++K R G
Sbjct: 121 TLPDGKD--EPMYALE-------VSGRSMEPLYREGDRIVVSPTASVRRGDRVVVKTREG 171
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AK+L + R+I+L SLN +P+ + +I+W+ARI+WA+Q
Sbjct: 172 EVMAKILQRQTARTIELSSLNPDFPLRQFAVEEIDWLARIVWATQ 216
>gi|150395367|ref|YP_001325834.1| putative phage repressor [Sinorhizobium medicae WSM419]
gi|150026882|gb|ABR58999.1| putative phage repressor [Sinorhizobium medicae WSM419]
Length = 215
Score = 288 bits (738), Expect = 3e-76, Method: Composition-based stats.
Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 8/222 (3%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI KIL
Sbjct: 1 MLSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRRSADGRDRWPSTESISKIL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
AT T+ Q + L + +EK+ IPL+ F +G+GGFFD G FP G W+++ P
Sbjct: 61 QATGATVDQFMALMQPNAAGSEKESAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDSIEFP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
G YA++ Q SMLPLYR GDILI++ + QV DR++++ R G+++
Sbjct: 121 TAERRQTGAYALE-------VQGDSMLPLYRDGDILIVDPSAQVRRNDRVVVRTREGEVM 173
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
AKVL + R I+L+SLN +P EM ++EWIARI+WASQ
Sbjct: 174 AKVLARQTPRGIELVSLNPDHPNRNFEMKEVEWIARIIWASQ 215
>gi|327190883|gb|EGE57941.1| putative phage-related transcriptional regulator protein [Rhizobium
etli CNPAF512]
Length = 228
Score = 287 bits (735), Expect = 6e-76, Method: Composition-based stats.
Identities = 118/235 (50%), Positives = 154/235 (65%), Gaps = 21/235 (8%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTE--------------KKEKEIPLLYFPPSGSGGFFDSGV 108
AT ++ Q L L G E + IPLL F +G+GGFFD G
Sbjct: 61 DATGASMEQFLALLPPGGTAAERTGERAQQPDSRFQPQGGAIPLLGFAQAGAGGFFDDGG 120
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
FP G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV
Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
DR++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228
>gi|190890233|ref|YP_001976775.1| phage-related transcriptional regulator protein [Rhizobium etli
CIAT 652]
gi|190695512|gb|ACE89597.1| putative phage-related transcriptional regulator protein [Rhizobium
etli CIAT 652]
Length = 228
Score = 287 bits (735), Expect = 6e-76, Method: Composition-based stats.
Identities = 118/235 (50%), Positives = 154/235 (65%), Gaps = 21/235 (8%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTE--------------KKEKEIPLLYFPPSGSGGFFDSGV 108
AT ++ Q L L G E + IPLL F +G+GGFFD G
Sbjct: 61 DATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPQGGAIPLLGFAQAGAGGFFDDGG 120
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
FP G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV
Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
DR++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228
>gi|254292703|ref|YP_003058726.1| phage repressor [Hirschia baltica ATCC 49814]
gi|254041234|gb|ACT58029.1| putative phage repressor [Hirschia baltica ATCC 49814]
Length = 206
Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats.
Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 16/221 (7%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKIL 62
H IW ID +A RH L+ S LAR AGLD T+FNKSKR +G + RWPSTES+ K L
Sbjct: 1 MRHSDIWNGIDALAARHGLSVSALARAAGLDATAFNKSKRASADGSKPRWPSTESLSKAL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AA + D+ ++ + IPL+ +G GGFFD FP G W+ + P+
Sbjct: 61 AAVGTGWEEFADMAQG------RQGRTIPLIGLAQAGDGGFFDDAGFPVGASWDDIHFPD 114
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ +YA++ SM P++R+GD +I+ + V GDR++ K + G+++A
Sbjct: 115 MGD--ETVYALE-------ISGDSMEPVFREGDRIIVAPGMDVRRGDRVVAKTKEGEVLA 165
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
K L ++L+S N YP SDIEWIARILWASQ
Sbjct: 166 KFLGHLSASRVELISANPAYPPREFAASDIEWIARILWASQ 206
>gi|218516275|ref|ZP_03513115.1| putative phage-related transcriptional regulator protein [Rhizobium
etli 8C-3]
Length = 228
Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats.
Identities = 118/235 (50%), Positives = 154/235 (65%), Gaps = 21/235 (8%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L
Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60
Query: 63 AATNETICQLLDLPFSDGRTTE--------------KKEKEIPLLYFPPSGSGGFFDSGV 108
AT ++ Q L L G E + IPLL F +G+GGFFD G
Sbjct: 61 DATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPEGGAIPLLGFAQAGAGGFFDDGG 120
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
FP G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV
Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
DR++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ
Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228
>gi|163761294|ref|ZP_02168369.1| putative phage-related transcriptional regulator [Hoeflea
phototrophica DFL-43]
gi|162281451|gb|EDQ31747.1| putative phage-related transcriptional regulator [Hoeflea
phototrophica DFL-43]
Length = 226
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 16/231 (6%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
SH++IW A+D +AERH LT SGLAR+AGLDPT+FNKSKR G +GR+RWPSTES+ K+
Sbjct: 3 PMLSHERIWSALDALAERHGLTASGLARRAGLDPTAFNKSKRRGADGRDRWPSTESLAKV 62
Query: 62 LAATNETICQLLDLPFS---------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
L AT ++ + L + IPLL F +GSGGFFD G FP G
Sbjct: 63 LDATGSSLNDFMSLVVGGQRNDASAIPEGAFPPQAGSIPLLGFAQAGSGGFFDDGGFPAG 122
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
W+ V P S G+YA++ Q SMLPLYR GDILI+ QV GDR++
Sbjct: 123 QGWDVVDFPAQPSERPGVYALE-------VQGDSMLPLYRDGDILIVEPGAQVRRGDRVV 175
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++ G+++AKVL RS++L+SLN +P + E+S+I+W+ARI+WASQ
Sbjct: 176 VRSGEGEVMAKVLNRLSPRSVELISLNPDHPNRSFELSEIDWMARIIWASQ 226
>gi|326403286|ref|YP_004283367.1| putative peptidase S24 [Acidiphilium multivorum AIU301]
gi|325050147|dbj|BAJ80485.1| putative peptidase S24 [Acidiphilium multivorum AIU301]
Length = 223
Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats.
Identities = 88/227 (38%), Positives = 120/227 (52%), Gaps = 11/227 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H+ IW AID +A + L+ S LAR AGLDPTSFN SKR +GR RWPSTESI KIL+
Sbjct: 1 MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60
Query: 64 ATNETICQLLDL-------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
A++ I L P R + +PL +G GGFFD G PTG W+
Sbjct: 61 ASSIGIEAFAALVGGRSTTPAGTSRPRRPAVRTVPLASLAQAGQGGFFDEGGNPTGGGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
+ +P + A Q SM P+YR GDI++++ A V GDR++I+
Sbjct: 121 RIALPV----GDAGIAGDPHAFALTIQGDSMDPVYRDGDIIVVSPASPVRTGDRVVIRTA 176
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++A+ L+ R +DL N YP +I + RI+WASQ
Sbjct: 177 GGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223
>gi|148259746|ref|YP_001233873.1| putative phage repressor [Acidiphilium cryptum JF-5]
gi|146401427|gb|ABQ29954.1| putative phage repressor [Acidiphilium cryptum JF-5]
Length = 223
Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 87/227 (38%), Positives = 119/227 (52%), Gaps = 11/227 (4%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H+ IW AID +A + L+ S LAR AGLDPTSFN SKR +GR RWPSTESI KIL+
Sbjct: 1 MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60
Query: 64 ATNETICQLLDL-------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
A++ I L P R + +PL +G GFFD G PTG W+
Sbjct: 61 ASSIGIEAFAALVGGRSTTPAGTSRPRRPAMRTVPLASLAQAGQDGFFDEGGNPTGGGWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
+ +P + A Q SM P+YR GDI++++ A V GDR++I+
Sbjct: 121 RIALPV----GDAGIAGDPHAFALTIQGDSMDPVYRDGDIIVVSPASPVRTGDRVVIRTA 176
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++A+ L+ R +DL N YP +I + RI+WASQ
Sbjct: 177 GGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223
>gi|254504422|ref|ZP_05116573.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11]
gi|222440493|gb|EEE47172.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11]
Length = 221
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 9/222 (4%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
SH+K+W AID +A + +TPSGLA++AGLDPT+FN+SKRF +GR RWPSTES+ KI
Sbjct: 9 PMLSHEKVWAAIDALASYNEMTPSGLAKRAGLDPTTFNRSKRFAGDGRPRWPSTESLAKI 68
Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L AT E++ + +P+ F FD+ PTG W T+ P
Sbjct: 69 LEATGESLKSFAGRVEAPELRPSTTLSALPVAGFSNVHEENAFDTTGRPTGEHWETIVFP 128
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
I+A++ ++LPLYRKGD++++ + V GDR+++KP G +
Sbjct: 129 T--DHTQNIFALE-------VSGDALLPLYRKGDLIVVAPSAAVRRGDRIVLKPSEGGLA 179
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L+ R +++ + ++ + S IEW ARI+WASQ
Sbjct: 180 VYTLLKRTPKTLQVQTIGDNPENAALLHSAIEWTARIIWASQ 221
>gi|295687529|ref|YP_003591222.1| putative phage repressor [Caulobacter segnis ATCC 21756]
gi|295429432|gb|ADG08604.1| putative phage repressor [Caulobacter segnis ATCC 21756]
Length = 214
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 13/225 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESI 58
M + SH +IW AID +A+R ++TPS +AR AGLDPTSFN+SKR +GR RWPSTES+
Sbjct: 1 MATLSHGEIWRAIDALADRFDMTPSAMARMAGLDPTSFNRSKRGSTEADGRARWPSTESL 60
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
K+L AT + L ++ PL+ +G GFFD+ P G+ W+ V
Sbjct: 61 AKLLEATGVNFSEFAALTEQSPGAGAGGKRGAPLIGLAQAGQEGFFDAAGMPVGSGWDEV 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
P++ G++A++ ++ P+YR GD L+++ ++ GDR++ + G
Sbjct: 121 AAPDLG---QGLFALE-------VSGETLAPVYRDGDRLLVSPTVEPRKGDRVVARTHAG 170
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++ + L R+I+L++L + ++ WIARI+WASQ
Sbjct: 171 EVLVRELGRVTARTIELLALGRES-DRLLSRDEVAWIARIVWASQ 214
>gi|304394055|ref|ZP_07375978.1| dna-binding protein rdga [Ahrensia sp. R2A130]
gi|303293495|gb|EFL87872.1| dna-binding protein rdga [Ahrensia sp. R2A130]
Length = 232
Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats.
Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 29/241 (12%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSHK++W AID +A+ ++++ S LAR AGLD T+FNKSKR G +GR RWPSTES+ KI+
Sbjct: 1 MFSHKQVWAAIDALAQDNDMSVSKLARTAGLDATTFNKSKRIGADGRQRWPSTESLSKIM 60
Query: 63 AATNETICQLLDLPFS--------------------DGRTTEKKEKEIPLLYFPPSGSGG 102
AT I + IPLL +GSGG
Sbjct: 61 DATKTDIDGFMATMRDGQASFAAGFAGMSETGGTYVPDAPGHPVPVSIPLLGLAQAGSGG 120
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
FFD PTG W V P+ S +YA++ SM PLYR GD ++++
Sbjct: 121 FFDDAGLPTGEGWEAVEFPQ--SDREPLYALE-------IAGDSMEPLYRDGDRIVVSPT 171
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
V GDR++++ G+I+AK L + ++++L S N + T ++++++W+ARI+W S
Sbjct: 172 ASVRRGDRVVVRTSDGEIMAKTLARQTAKTVELDSENPEHQKRTFDLTEVDWVARIMWVS 231
Query: 223 Q 223
Q
Sbjct: 232 Q 232
>gi|307941488|ref|ZP_07656843.1| peptidase family S24 [Roseibium sp. TrichSKD4]
gi|307775096|gb|EFO34302.1| peptidase family S24 [Roseibium sp. TrichSKD4]
Length = 218
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 15/227 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SHK+IW AID +A R+ L+PSGLAR+AGLDPT+FN SKRFG +GR RWPSTES+ KIL
Sbjct: 1 MLSHKQIWAAIDTLAARNGLSPSGLARRAGLDPTTFNPSKRFGGDGRPRWPSTESLSKIL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKE------KEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
AT E++ L+++ T + + +P+ F + FD P+ W+
Sbjct: 61 QATGESLETLMEVLLGLAPTGPRAAPLAQDGRMVPIAGFSDANQQAAFDPTGRPSSPMWD 120
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
++ P+ + + ++A++ + P YR GDILI+ + GDR+L++
Sbjct: 121 SLLFPDPKEKN--LFALE-------INSDDLTPYYRSGDILIVAPVQAIRRGDRVLVRQT 171
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+G + ++ + + D +L + +E + I+W+AR++W SQ
Sbjct: 172 SGALQLFLMDRQNPSAFDFHALTPPHETVHLERTKIDWVARVMWVSQ 218
>gi|16124337|ref|NP_418901.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15]
gi|221233019|ref|YP_002515455.1| LexA-like transcriptional repressor [Caulobacter crescentus NA1000]
gi|13421181|gb|AAK22069.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15]
gi|220962191|gb|ACL93547.1| LexA-related transcriptional repressor [Caulobacter crescentus
NA1000]
Length = 213
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 12/224 (5%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIF 59
M + SH +IW AID +AER ++TPS +AR AGLDPTSFN+SKR E G RWPSTES+
Sbjct: 1 MATLSHGEIWRAIDALAERFDMTPSAMARMAGLDPTSFNRSKRGSAETGHARWPSTESLS 60
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
K+L AT + L + + PL+ +G GFFD P G W+
Sbjct: 61 KLLEATGVNFSEFAALTERSPVRAPGR-RGAPLIDLAQAGKDGFFDEAGMPVGAGWDEAP 119
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P++ G++A++ + P+YR GD L+++ ++ GDR++ + G+
Sbjct: 120 APDLG---EGLFALE-------VTGDDLAPVYRDGDRLLVSPTLEPRKGDRVVTRTHGGE 169
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++ + L RSI+L++L+ + ++ WIARI+W SQ
Sbjct: 170 VLVRELGRVTARSIELLALDRVSGERLLSRDEVAWIARIVWVSQ 213
>gi|27376249|ref|NP_767778.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
gi|27349389|dbj|BAC46403.1| bll1138 [Bradyrhizobium japonicum USDA 110]
Length = 217
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 13/220 (5%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
+H +IW A+DR+A R L+PSGLA++AGLDPT+FN+SKR +GR RWPSTESI K LA
Sbjct: 11 LTHDQIWVALDRLAARAGLSPSGLAKRAGLDPTTFNRSKRVTSDGRERWPSTESIAKALA 70
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
A +I L + + + +PLL +G+ G FD P+G W + +P
Sbjct: 71 AAGASIDVFAGLISDETGNS----RSVPLLGLAQAGASGAFDESGLPSGKGWTELALPTA 126
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ +A++ ++ P YR GD+++++ + GDR+++ + G++
Sbjct: 127 ED--SQTFALE-------IAGDALAPTYRNGDVILVSPGTPIRKGDRVVVTTKAGEVTVA 177
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L R +++DL+ L+ T+ ++ W+ARI+WASQ
Sbjct: 178 TLKRRTAKALDLLPLDASQAERTIAAGELAWVARIVWASQ 217
>gi|170741440|ref|YP_001770095.1| peptidase S24/S26 domain-containing protein [Methylobacterium sp.
4-46]
gi|168195714|gb|ACA17661.1| peptidase S24 and S26 domain protein [Methylobacterium sp. 4-46]
Length = 209
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 12/219 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH +IW AID +A+RH LTPSGLA++AGLDPTSFN+SKR +GR RWPSTES+ KIL
Sbjct: 1 MLSHDRIWSAIDHLAQRHRLTPSGLAKRAGLDPTSFNRSKRVAPDGRRRWPSTESLAKIL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AAT T+ + + L +PL+ G PTG+ W+ + P+
Sbjct: 61 AATGATLDEFVQLVSPRAAAG---AAVVPLIGSAALAVAGRIGPDGRPTGSAWDELDFPD 117
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + +AI+ Q + PLY GD+L++ + + GDR+L+ RTG +V
Sbjct: 118 LGTQD--CFAIE-------VQGNDLRPLYHDGDVLVVCATAPMRRGDRILVSLRTGALVG 168
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
VL R R DL + ++ ++I W+ARI+W
Sbjct: 169 AVLRRRTARVADLAPVMPGEAARSIATAEIAWMARIMWV 207
>gi|254420759|ref|ZP_05034483.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
gi|196186936|gb|EDX81912.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
Length = 211
Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 87/224 (38%), Positives = 119/224 (53%), Gaps = 17/224 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFK 60
SH K+W+A+D +A R L+PSGLAR+AGLD TSFN SKRFG R RWPSTES+
Sbjct: 2 PLSHAKLWKAVDALARREGLSPSGLARRAGLDATSFNPSKRFGAGDPPRPRWPSTESMTL 61
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+L AT ++ + L +PLL +G GFFD P G+ W+ +
Sbjct: 62 MLQATGVSLAEFAALADD----APPTSTTVPLLGLARAGLDGFFDDAGLPVGDGWDQTEL 117
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGD 179
P + + SM PLYR+GD +I++ V GDR++ + +G+
Sbjct: 118 PR----------VNATTFSLRISGDSMAPLYREGDRVIVDRGDPAVRRGDRVVARLTSGE 167
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+VAK L R+ L S+N YP V +IEW+ARILW SQ
Sbjct: 168 VVAKELTGLTARAATLSSINPDYPPRIVPRREIEWMARILWVSQ 211
>gi|90418702|ref|ZP_01226613.1| putative transcription regulator [Aurantimonas manganoxydans
SI85-9A1]
gi|90336782|gb|EAS50487.1| putative transcription regulator [Aurantimonas manganoxydans
SI85-9A1]
Length = 215
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 100/224 (44%), Positives = 140/224 (62%), Gaps = 12/224 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
FSH +IW AID +A RH ++PSGLAR+AGLDPT+FNKSKR +GR RWPSTESI K++
Sbjct: 1 MFSHDRIWLAIDALATRHRMSPSGLARRAGLDPTTFNKSKRNASDGRPRWPSTESIAKVI 60
Query: 63 AATNETICQLLDLPFSDGR---TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
AAT +I + L + + +PLL F +G GGFFD FP G W+ +
Sbjct: 61 AATGTSIEEFAALMRGETPGVPRSPSPAMSVPLLGFAEAGGGGFFDDSGFPAGQGWDEIA 120
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
+P +YA++ SM+PLYR GDILI++ A V GDR++++ R G+
Sbjct: 121 LPSTGD--ETVYALE-------VSGQSMMPLYRDGDILIVSPAAAVRRGDRVVVRTREGE 171
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
++AK+L + R+I+L S N +P +M ++EW+ARILWASQ
Sbjct: 172 VMAKILQRQTSRTIELASTNPDFPDRQFQMDEVEWMARILWASQ 215
>gi|302383458|ref|YP_003819281.1| phage repressor [Brevundimonas subvibrioides ATCC 15264]
gi|302194086|gb|ADL01658.1| putative phage repressor [Brevundimonas subvibrioides ATCC 15264]
Length = 211
Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 17/224 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFK 60
S SH ++W A+D +A R L+ S LARKAGLD T+FN SKRFG R RWPSTES+
Sbjct: 2 SLSHDRLWTALDTLARRQGLSSSALARKAGLDATAFNPSKRFGPGVPPRPRWPSTESLNL 61
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
IL AT ++ + L + PLL +G+ GFFD PTG+ W +
Sbjct: 62 ILEATGTSLAEFAALADD----APARIATAPLLGMAQAGADGFFDDAGLPTGDGWEQTDL 117
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGD 179
P SP ++++ SM+PLYR+GD ++++ V GDR++ + R+G+
Sbjct: 118 P---SPKESLFSL-------LISGDSMVPLYREGDRVLVDRERTDVRKGDRVVARTRSGE 167
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+AK + + R++ L S+N YP + +D++W+ARILW SQ
Sbjct: 168 TLAKQIEALTARTVTLASINPAYPPRVLARADVDWMARILWVSQ 211
>gi|296532329|ref|ZP_06895067.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957]
gi|296267353|gb|EFH13240.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957]
Length = 216
Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 91/225 (40%), Positives = 130/225 (57%), Gaps = 14/225 (6%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H IW A+D +A H L+PSGLARKAGLDPT+FN SKR G +GR RWPSTES+ KILA
Sbjct: 1 MRHDDIWRAVDALAAEHGLSPSGLARKAGLDPTAFNPSKRLGTDGRARWPSTESVAKILA 60
Query: 64 ATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
AT + L + IPL+ +G G+F G +P G W+ +
Sbjct: 61 ATGTDMESFAALVTGAAAALNRSPRSMPGRRIPLIGLAQAGGDGYFGDGGYPVGAGWDEI 120
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
PE+ P+ YA++ SM P++R GDI+I++ V GDR++++ G
Sbjct: 121 STPELSDPN--AYALE-------ISGDSMEPVFRDGDIIIVSPNAPVRRGDRVVVRTLKG 171
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+++AK L+ + R I+L SLN +P + ++++I WI RILWASQ
Sbjct: 172 EVMAKELLRQSARRIELASLNPAHPGYSFDLAEIAWIHRILWASQ 216
>gi|220924406|ref|YP_002499708.1| peptidase S24/S26 domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219949013|gb|ACL59405.1| peptidase S24/S26 domain-containing protein [Methylobacterium
nodulans ORS 2060]
Length = 209
Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 12/219 (5%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH++IW AID +A+RH LTPSGLAR+AGLD TSFN+SKR +GR RWPSTES+ KIL
Sbjct: 1 MLSHERIWLAIDHLAQRHGLTPSGLARRAGLDATSFNRSKRIAPDGRKRWPSTESLAKIL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT ++ L L + +G P G W + P+
Sbjct: 61 TATGASLDDFLQLVEPRPAPPPAILPL---IGSAALAAGRRIGPDGRPAGAGWEEMEFPD 117
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + +AI+ Q +LPLY GD+L++ + GDR L+ + A
Sbjct: 118 LGAQ--SCFAIE-------VQGEGLLPLYHDGDVLVVCATAPARRGDRTLVCLDGEGLFA 168
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
L R R+ + PV TV + I W+AR++W
Sbjct: 169 ADLRRRTVRTTEFAGRTPGEPVRTVPTARIAWMARVMWV 207
>gi|254471620|ref|ZP_05085021.1| dna-binding protein rdga [Pseudovibrio sp. JE062]
gi|211958822|gb|EEA94021.1| dna-binding protein rdga [Pseudovibrio sp. JE062]
Length = 214
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 80/234 (34%), Positives = 110/234 (47%), Gaps = 33/234 (14%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
H+ +W A+D+MA+RH LTPSGLAR+AGLDPTSFN SKRF +GR RWPSTES+ K+L
Sbjct: 1 MLDHENLWAALDKMAKRHQLTPSGLARRAGLDPTSFNPSKRFAADGRPRWPSTESLAKVL 60
Query: 63 AATNETICQLLDLP-------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
T T L F T + +E+ L F DS +F
Sbjct: 61 EVTQMTFVDFAGLLQDKTEISGTHFRSFPAYLCTSDELREVDLEDLSGFQLDKFCDSFIF 120
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P+ S +A++ S P YR+G ILI++ + D
Sbjct: 121 PS-------------SQSEKFFALE-------VSSNSFEPYYREGQILIVSPESSLRRND 160
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+LI +TGD+ L + I+ V+++D+ W ARILW SQ
Sbjct: 161 HVLIATKTGDLHCGPLQRQTNERIEFRRHTPDDTPRVVQVADLVWTARILWVSQ 214
>gi|118589338|ref|ZP_01546744.1| repressor protein CI [Stappia aggregata IAM 12614]
gi|118438038|gb|EAV44673.1| repressor protein CI [Stappia aggregata IAM 12614]
Length = 227
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
T SH+K+W AID +A ++ LTPSGLAR+AGLDPT+FN SKR +GR RWPSTES+ K+
Sbjct: 17 TVLSHEKVWAAIDALASQNGLTPSGLARRAGLDPTAFNPSKRVAGDGRPRWPSTESLAKV 76
Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
LAAT E + ++ + +P+ + FD+ P+G W P
Sbjct: 77 LAATGEALNTFAARVETEDAPSGSVPALVPVAALEAASDRNAFDAAGRPSGATWQQFSFP 136
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + +A+Q + PLYR GDI+++ + GDRL +K +G +
Sbjct: 137 QPGAS----FALQ-------VSNEDFQPLYRNGDIVVVAPDAPLRTGDRLALKLTSGRLS 185
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
L G + + ++ S IEW ARI+WASQ
Sbjct: 186 LYTLQEAGGEELSVRTIGENSHSLRFRHSAIEWTARIIWASQ 227
>gi|114569067|ref|YP_755747.1| putative phage repressor [Maricaulis maris MCS10]
gi|114339529|gb|ABI64809.1| putative phage repressor [Maricaulis maris MCS10]
Length = 208
Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 15/222 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKI 61
+H IW IDR+A +PSGLAR+AGLD T+FN SKR +G + RWPSTESI K
Sbjct: 1 MLTHDDIWRGIDRLARHAQTSPSGLARRAGLDSTTFNPSKRISADGTKPRWPSTESIAKA 60
Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
LAA + L RT +P FD+ +P G W+ + P
Sbjct: 61 LAAAHLDFDDFAGLISGQPRTG-----ALPSRALADGEEQDPFDATGYPAGPDWDAIPFP 115
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + QDT MLP+YR GD L+++ GDR++++ R G
Sbjct: 116 GLA---------PGEAFALTVQDTHMLPVYRPGDRLVVSHEAPTRVGDRVVVQRRDGSRS 166
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
A L + +++ L L+ P T+ ++ + W+ARI+W SQ
Sbjct: 167 AWTLSEKTVQALRLAPLDPLQPALTLPLTQVAWLARIVWVSQ 208
>gi|114328547|ref|YP_745704.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1]
gi|114316721|gb|ABI62781.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1]
Length = 221
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 21/231 (9%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
H+ IW AID +A L+ SGLAR+AGLD T+FN SKR +GR RWPSTESI KIL
Sbjct: 1 MKHEDIWRAIDTLAAIKGLSTSGLARRAGLDATTFNLSKRQMPDGRQRWPSTESISKILV 60
Query: 64 ATNETICQLLDLP------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT E++ L +D + IPL P D + GN
Sbjct: 61 ATGESLGAFTSLVNGAETLSADSGQNTHYGRRIPLFSLPE-----LRDLPIKGEGN---- 111
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+P R + + + DTS+ PL+R+G ILI++ + GDR++++
Sbjct: 112 -ALPSARDETSLPDVADREAYGIEIHDTSLAPLFREGTILIVSPNAPLRRGDRVIVRLAA 170
Query: 178 G-----DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ V R R +D+ SLN ++ ++ + WI RI+WASQ
Sbjct: 171 HDGEPSETVFGHFHRRSARWMDISSLNGDKAERSISLTSLVWIHRIVWASQ 221
>gi|330992988|ref|ZP_08316928.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1]
gi|329759941|gb|EGG76445.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1]
Length = 223
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 83/189 (43%), Gaps = 12/189 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH IW AIDR+A LTPSGLAR AGLD T+FN SKR GR RWP TES+ + L
Sbjct: 1 MISHDDIWRAIDRLAAERGLTPSGLARAAGLDSTTFNPSKRITPSGRPRWPGTESLARTL 60
Query: 63 AATNETICQLLDLPFS---DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
+AT + L T + + F FD P G +W
Sbjct: 61 SATGISFEGFSRLLSGHHDPETTNRAHHSHLKIAPFSQLAHPELFDETGLPEGERWEKWE 120
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
+ H+ YA+ +M P++RKG L+++ + DR+L+ G
Sbjct: 121 FHGMADHHS--YAV-------HVDCDTMEPIFRKGGTLVVSPTAAIRVHDRVLLHTPQGT 171
Query: 180 IVAKVLISR 188
++ R
Sbjct: 172 ACCGMVTER 180
>gi|296114602|ref|ZP_06833255.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC
23769]
gi|295978958|gb|EFG85683.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC
23769]
Length = 221
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 13/202 (6%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
SH+ IW A+D +A +TPSGLAR AGLD T+FN SKR GR RWP TES+ + L
Sbjct: 1 MISHEDIWRALDLLATERGMTPSGLARAAGLDSTTFNPSKRMTSSGRPRWPGTESLARTL 60
Query: 63 AATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
+AT ++ L G R + ++ F G FD P+G++W T
Sbjct: 61 SATGISLEGFGRLMTGHGDRLGGTHHAHLMIVPFSELGQAELFDESGLPSGDRWETWDFH 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ H+ YA+ +M P++R G +L+++ + DR+L+
Sbjct: 121 GLADHHS--YAV-------LVDSDNMEPIFRAGTVLVVSPTAAIRQHDRVLLHGPDSHAC 171
Query: 182 AKVLISRRGRSIDLMSLNCCYP 203
++ R D+ +
Sbjct: 172 CGIV---TDRWHDVPLTAPLHE 190
>gi|162145992|ref|YP_001600450.1| hypothetical protein GDI_0160 [Gluconacetobacter diazotrophicus PAl
5]
gi|209544371|ref|YP_002276600.1| hypothetical protein Gdia_2230 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161784566|emb|CAP54103.1| conseved protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209532048|gb|ACI51985.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 217
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 16/225 (7%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
H +W+A+D +A LTPSGLAR AGLD TSFN SKR GR RWP TES+ ++L
Sbjct: 1 MMRHDDLWQALDNLAAERGLTPSGLARAAGLDSTSFNPSKRVTPAGRPRWPGTESLARVL 60
Query: 63 AATNETICQLLDLPFSDGRTTEKKEK---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
AT T+ L + + L GG FD+ P G W +
Sbjct: 61 DATGLTLESFGRLMAGQALPRASRAAGRSRLRLSALSHLEQGGMFDAAGLPVGRHWESWD 120
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
VP + +YA+ + P++R G L+++SA + DR+++
Sbjct: 121 VPGLGDAE--LYAVMVDT-------DAFEPVFRAGAFLVVSSAAAIRRQDRVILHRADAT 171
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVD---TVEMSDIEWIARILWA 221
+ A VL R G + D L +E + + RI+ A
Sbjct: 172 LCAVVLDPRPG-AYDPGPLLGGIGARDGMEIETGPTDHLHRIMMA 215
>gi|329115279|ref|ZP_08244034.1| Phage Repressor [Acetobacter pomorum DM001]
gi|326695722|gb|EGE47408.1| Phage Repressor [Acetobacter pomorum DM001]
Length = 214
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
++IW A+D +A+ LTPSGLAR AGLD T+FN S+R G RWP+ S+ + L
Sbjct: 1 MIPAERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGHGVWRWPALPSLLRAL 60
Query: 63 AATNETICQL----LDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
++ Q DG T + +PL + GG D P G W
Sbjct: 61 DVLRVSLAQFEAHLWGYEQPDGAKTPAPCFMRSLPLSWLDQ---GGVLDRAGLPAGGLWE 117
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDT-SMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+++ + DT M P+ R G L++ A+ DR+++
Sbjct: 118 Q---------EETFFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALHPRGADRVVLIR 168
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
V +L + R+I + PV W+ RI+ S
Sbjct: 169 AGQAPVVGILQEKPVRAIQPFGRSALQPVPAAAAG--VWLHRIVLIS 213
>gi|258541731|ref|YP_003187164.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256632809|dbj|BAH98784.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256635866|dbj|BAI01835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
gi|256638921|dbj|BAI04883.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
gi|256641975|dbj|BAI07930.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
gi|256645030|dbj|BAI10978.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
gi|256648085|dbj|BAI14026.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
gi|256651138|dbj|BAI17072.1| transcriptional regulator [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654129|dbj|BAI20056.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
Length = 214
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
++IW A+D +A+ LTPSGLAR AGLD T+FN S+R +G RWP+ S+ + L
Sbjct: 1 MIPAERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGQGVWRWPALPSLLRAL 60
Query: 63 AATNETICQL------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
++ Q + P + +PL + G D P G W
Sbjct: 61 DVLRVSLAQFEGHIWGYEQPDGVEAPAPCFMRSLPLSWLKQ---EGVLDRAGLPAGGLWE 117
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDT-SMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+++ + DT M P+ R G L++ A+ DR+++
Sbjct: 118 Q---------EETFFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALYPRGADRVVLIR 168
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
V +L + +I + PV + + W+ RI+ S
Sbjct: 169 PGQAPVVGILQEKPVLAIQPFGRSALQPVP--QAAAGVWLHRIVLIS 213
>gi|294853434|ref|ZP_06794106.1| peptidase family S24 [Brucella sp. NVSL 07-0026]
gi|294819089|gb|EFG36089.1| peptidase family S24 [Brucella sp. NVSL 07-0026]
Length = 160
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 61 ILAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
++ AT T + L IPLL +G+GG+FD FP G
Sbjct: 1 MMEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQG 60
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W+ V P G+YA++ SMLPLYR GD LI+ V GDR++++
Sbjct: 61 WDIVEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVR 111
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 112 TRDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 160
>gi|261318541|ref|ZP_05957738.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|265986342|ref|ZP_06098899.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|261297764|gb|EEY01261.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|264658539|gb|EEZ28800.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
Length = 170
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 64 ATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
AT T + L IPLL +G+GG+FD FP G W+
Sbjct: 14 ATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDI 73
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
V P G+YA++ SMLPLYR GD LI+ V GDR++++ R
Sbjct: 74 VEFPARTG--EGVYALE-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRD 124
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ
Sbjct: 125 GEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 170
>gi|254710961|ref|ZP_05172772.1| Peptidase family S24 [Brucella pinnipedialis B2/94]
gi|256029343|ref|ZP_05442957.1| Peptidase family S24 [Brucella pinnipedialis M292/94/1]
Length = 142
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 10/150 (6%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
LP G T+ IPLL +G+GG+FD FP G W+ V P G+YA+
Sbjct: 3 SLPRHLGEYTQDPHP-IPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTG--EGVYAL 59
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+I
Sbjct: 60 E-------VSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTI 112
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+L SLN +P E DIEWIARILWASQ
Sbjct: 113 ELHSLNPEHPNRIFESKDIEWIARILWASQ 142
>gi|260567943|ref|ZP_05838412.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260154608|gb|EEW89689.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
Length = 132
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 59/139 (42%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
+ IPLL +G+GG+FD FP G W+ V P G+YA++
Sbjct: 3 ARPAPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTG--EGVYALE-------VSG 53
Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+I+L SLN +P
Sbjct: 54 ESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHSLNPEHPN 113
Query: 205 DTVEMSDIEWIARILWASQ 223
E DIEWIARILWASQ
Sbjct: 114 RIFESKDIEWIARILWASQ 132
>gi|329889506|ref|ZP_08267849.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC
11568]
gi|328844807|gb|EGF94371.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC
11568]
Length = 152
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
++L A+ ++ + L + IPLL +G GFFD P W+
Sbjct: 2 RVLQASGLSLGEFAALADD----AAPHPRAIPLLGLARAGDEGFFDDAGLPMAEGWDQTE 57
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTG 178
+P + SM P+YR GD +I++ A +V GDR++++ G
Sbjct: 58 LPAHKD----------SLFSLTIDGDSMEPVYRPGDRVIVDLDATEVRRGDRVVVRTAEG 107
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
+ +AK + + GR + L S+N Y + I W+ARILW SQ
Sbjct: 108 ETLAKEIAALNGREVVLASVNPHYEPRILPRGQIRWMARILWVSQ 152
>gi|296160137|ref|ZP_06842956.1| putative phage repressor [Burkholderia sp. Ch1-1]
gi|295889611|gb|EFG69410.1| putative phage repressor [Burkholderia sp. Ch1-1]
Length = 222
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+PF G K IP+L G GF+ +P G+ + P G
Sbjct: 79 DAFNPIPFPPG-------KRIPVLGMAQLGDNGFWAEVEYPVGHGEGYLDFPSRDRDAYG 131
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I + SMLP + G+ +++ V GD +L+K + G ++ K+L+ +R
Sbjct: 132 IRCV----------GDSMLPRIKDGEFVVIEPNHPVENGDEVLVKAKDGRVMIKILLYQR 181
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIE---WIARILWAS 222
LMS+N + +E IE ++A I+ +S
Sbjct: 182 AGRTHLMSVNTEHAPLAIETEKIERLHYVAAIVKSS 217
>gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 228
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 29/218 (13%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKILAATNETICQ 71
I ++ + L+ LA G + S R G E R PS + I KI +
Sbjct: 8 IRKLRKEKGLSQQALAHACGWESQS-----RIGNYEKGTRQPSLQDIRKIADTLGVSFVD 62
Query: 72 LLDLPFSDGRT-------------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
L+ + + + KE +P++ G+ G+FD+ FP G+ +
Sbjct: 63 LVAFTDDNAQPLVVKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPGHGDGYL 122
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+ G+ K SMLP + G+ +++ GD ++++ G
Sbjct: 123 NIHSDDPDAYGL----------KVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAG 172
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
+ K I R S+N +P + ++I I
Sbjct: 173 RTMIKEYIYLRDGMYRFDSVNAEHPPIHIAENEILEIH 210
>gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1]
gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13]
gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40]
gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1]
Length = 228
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 29/218 (13%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKILAATNETICQ 71
I ++ + L+ LA G + S R G E R PS + I KI +
Sbjct: 8 IRKLRKEKGLSQQALAHACGWESQS-----RIGNYEKGTRQPSLQDIRKISDTLGVSFVD 62
Query: 72 LLDLPFSDGRT-------------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
L+ + + + KE +P++ G+ G+FD+ FP G+ +
Sbjct: 63 LVAFTDDNAQPLVVKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPGHGDGYL 122
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+ G+ K SMLP + G+ +++ GD ++++ G
Sbjct: 123 NIHSDDPDAYGL----------KVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAG 172
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
+ K I R S+N +P + ++I I
Sbjct: 173 RTMIKEYIYLRDGMYRFDSVNAEHPPIHIAENEILEIH 210
>gi|218555126|ref|YP_002388039.1| putative repressor CI from bacteriophage origin [Escherichia coli
IAI1]
gi|218361894|emb|CAQ99494.1| putative repressor CI from bacteriophage origin [Escherichia coli
IAI1]
Length = 224
Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+L G GG + + G+ + P + YA+ K SM+P
Sbjct: 95 VPVLGNTQLGVGGLWSDTQYSVGSSDGFIYWP---TKDEDAYAL-------KCVGDSMMP 144
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
++G+ +I+ GD +L+ R G+++ K + R LMS+N +P V
Sbjct: 145 RIKEGEFVIVEPNHDYTPGDEVLVVTRDGEVMVKTFLFERDGLFHLMSVNEDHPPVRVPR 204
Query: 210 SDIEWIA 216
+IE I
Sbjct: 205 ENIEKIH 211
>gi|260845233|ref|YP_003223011.1| putative phage repressor [Escherichia coli O103:H2 str. 12009]
gi|257760380|dbj|BAI31877.1| predicted phage repressor [Escherichia coli O103:H2 str. 12009]
gi|309702933|emb|CBJ02264.1| putative phage protein [Escherichia coli ETEC H10407]
Length = 224
Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+L G GG + + G+ + P + YA+ K SM+P
Sbjct: 95 VPVLGNTQLGVGGLWSDTQYSVGSSDGFIYWP---TKDEDAYAL-------KCVGDSMMP 144
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
++G+ +I+ GD +L+ R G+++ K + R LMS+N +P V
Sbjct: 145 RIKEGEFVIVEPNHDYTPGDEVLVVTREGEVMVKTFLFERDGLFHLMSVNEDHPPVRVPR 204
Query: 210 SDIEWIA 216
+IE I
Sbjct: 205 ENIEKIH 211
>gi|73542066|ref|YP_296586.1| peptidase S24, S26A and S26B [Ralstonia eutropha JMP134]
gi|72119479|gb|AAZ61742.1| Peptidase S24, S26A and S26B [Ralstonia eutropha JMP134]
Length = 421
Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 13/152 (8%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
L F + ++IP+ G G F +P G+ V P YA+
Sbjct: 275 SLAFDVFPIPQNSFRKIPVRGMAQLGDNGHFVDIEYPVGHGDGYVFFPTKDPD---AYAL 331
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM P + + +++ Q+ GD +L K + G ++ K L R +
Sbjct: 332 RCN-------GESMRPRVKHNEFVVVEPNTQIQNGDEVLAKSQDGRVMVKELAYIRDGIV 384
Query: 194 DLMSLNCCYPVDTVEMSDIE---WIARILWAS 222
L S+N + + + IE ++A I+ S
Sbjct: 385 HLSSVNERHGMVRIPQDQIERLHFVAGIVKRS 416
>gi|330445051|ref|ZP_08308704.1| peptidase S24-like family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489242|dbj|GAA03201.1| peptidase S24-like family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 169
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
++ N ++ + L + IP++ +G + +P G V
Sbjct: 9 ARVAEKLNVSL-EWLYYGGEEIGLACSPSAHIPIVGNTQAGPDRAWLDLGYPAGYSDEYV 67
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
P +YA+ K SM P +G+ ++++ + G+ ++++ TG
Sbjct: 68 DFPTKAR---NVYAL-------KVVGNSMSPRILEGEAVLVDPESEPATGEEVVVRLTTG 117
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
++ K L + R I L S N Y + ++E++ ++
Sbjct: 118 AVMVKTLAAIRDEKIFLDSYNHGYERMVFPLDEVEFMHPVI 158
>gi|317054052|ref|YP_004118077.1| putative phage repressor [Pantoea sp. At-9b]
gi|316952047|gb|ADU71521.1| putative phage repressor [Pantoea sp. At-9b]
Length = 230
Score = 91.9 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 32/216 (14%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+D + + NL+ + LAR AG+ P + N + G G+ +S KI AAT + +
Sbjct: 15 LDELLKAANLSKADLARIAGVSPQAVNNWFKRGEIGK------DSAIKISAATGLDLSWV 68
Query: 73 LDLPFSDGRTTEKKEKE------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L T +K IP+ G G D F G W +
Sbjct: 69 LGESDQMYSTPHQKPASEVEVVGNIMNGVIPVKGDAVLGMDGLIDMMEFHAG--WLRI-- 124
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
Y+ + + + SM P + G+ +++ +V+ GD + I+ G
Sbjct: 125 ----------YSDDREAYGVRVRGDSMWPRIQSGEFVVIEPNTKVHPGDEVFIRTSDGHN 174
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
+ K+L R S+N + T+ ++ ++ I
Sbjct: 175 MIKILNYNRAGDYQFTSINNDHKPFTLPVNQVDKIH 210
>gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp]
gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp]
Length = 240
Score = 91.5 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 38/227 (16%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKILAATNETICQ 71
+ R+ + ++ LA + G S R G E R PS + I A ++ +
Sbjct: 8 LKRLRKAKGMSQQALAEECGWASQS-----RIGNYEADLRAPSLSDLLLIAPALGVSLAE 62
Query: 72 LLDLPFSDGR----------------------TTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
L G KE +P++ G+ G+F++ F
Sbjct: 63 LAGSDEWTGAYGVQVQVKNHQVRESVGAETIEAGTAKEGAVPVVGNAKLGTDGYFEAVDF 122
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P G+ + + K SM P + G+ +++ GD
Sbjct: 123 PVGHGDGYLLIHSD----------DPNAYGLKVLGDSMHPRIKNGEYVLIEPNKVFTSGD 172
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
+++K + G + K I R S+N + + I+ I
Sbjct: 173 EVMVKTKDGQAMIKEFIYLRDGMYRFDSVNQSHQPIHLPEDAIDKIH 219
>gi|332160963|ref|YP_004297540.1| putative repressor CI from bacteriophage origin [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325665193|gb|ADZ41837.1| Putative repressor CI from bacteriophage origin [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862119|emb|CBX72283.1| hypothetical protein YEW_AK02200 [Yersinia enterocolitica W22703]
Length = 225
Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G E ++IP++ G+GGF++ +P G+ + P YA+
Sbjct: 85 GGDPHEMHFRDIPVVGNAQLGNGGFWNDMEYPIGSGDGFIRWPSYDPD---AYAL----- 136
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
K SM+P ++G+ +I+ GD +L+ +++ K + R I L+ +
Sbjct: 137 --KCVGDSMMPRIKEGEFVIIEPGHNYIPGDEVLVVTDKDEVMVKTFLFERDGYIHLLPV 194
Query: 199 NCCYPVDTVEMSDIE---WIARILWAS 222
N + + + ++A I +S
Sbjct: 195 NEDHAPIKYPRTAVVKIQYVAGIAKSS 221
>gi|212712325|ref|ZP_03320453.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM
30120]
gi|212685071|gb|EEB44599.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM
30120]
Length = 224
Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
IP++ G GG + +P G + P + + SM+
Sbjct: 91 SIPVVGRAQLGEGGCWSDLQYPIGMGEGYIHWPTSDPDAYALLCV----------GDSMI 140
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV---D 205
P ++G+ +I+ GD +L+ T + + K + R I L S+N +P +
Sbjct: 141 PRIKEGEFVIIEPNHTYRPGDEVLLVTSTEETMVKTYLYERDGYIHLSSINDAHPPIKVE 200
Query: 206 TVEMSDIEWIARILWAS 222
+++ I ++A I S
Sbjct: 201 QIKVDKIHYVAGIAKPS 217
>gi|85058275|ref|YP_453977.1| hypothetical protein SG0297 [Sodalis glossinidius str. 'morsitans']
gi|84778795|dbj|BAE73572.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
Length = 232
Score = 88.5 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ ++P+L G GG++D + G V P +A+
Sbjct: 91 PDKPIPLAFTKVPMLGTAQLGGGGYWDLQEYAVGQGDGYVLWPTKDKD---AFAL----- 142
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
K Q SM+P + G+ +++ GD +L++ G+++ K+ + ++ ++L+S+
Sbjct: 143 --KCQGDSMMPRIQHGEFVVVEPNRGYKPGDEVLVQDEQGEVMIKIFLFQKDGIVNLLSV 200
Query: 199 NCCYPVDTVEMSDIE---WIARILWAS 222
N + ++ I+ ++A I+ S
Sbjct: 201 NSKHAPTRLDAHTIKKMFYVAGIVKDS 227
>gi|284006836|emb|CBA72100.1| phage transcriptional regulator [Arsenophonus nasoniae]
Length = 230
Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
K IP+L GS G+++ +P G + P +A++ SM
Sbjct: 98 KAIPVLGNAQLGSEGYWEELEYPIGYGDGYINWPTKDPD---AFALKCI-------GDSM 147
Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
P + G+ +++ GD + I G+ + K + R I ++S+N +P
Sbjct: 148 KPRIKNGEYVVIEPNHTYLPGDEVFITTSEGEAMVKTFLYERDGVIVVISINENHPPLHF 207
Query: 208 EMSDIE 213
+++ IE
Sbjct: 208 DINRIE 213
>gi|145635989|ref|ZP_01791671.1| hypothetical protein CGSHiAA_00695 [Haemophilus influenzae PittAA]
gi|145266755|gb|EDK06777.1| hypothetical protein CGSHiAA_00695 [Haemophilus influenzae PittAA]
Length = 301
Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+P+ + G+ G + +P G + P +YA+ K Q
Sbjct: 167 PVNHVPIRGYAQLGTEGHWIDLEYPVGEGDGYIWWPSR---DEDVYAL-------KCQGD 216
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +I+ ++ GD +L+ ++ K+ +G + L S+N +
Sbjct: 217 SMTPRIKHGEYVIIEPNHEIKNGDEVLVVTDEDQVMVKIYAYEQGGRLTLYSVNENHEPI 276
Query: 206 TVEMSDI---EWIARILWAS 222
+ +I ++IA I S
Sbjct: 277 NLYQENIRKMQYIAGIAKES 296
>gi|255606333|ref|XP_002538548.1| conserved hypothetical protein [Ricinus communis]
gi|223511638|gb|EEF23835.1| conserved hypothetical protein [Ricinus communis]
Length = 331
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+ G G++ + G S YA++ + SM P
Sbjct: 204 VPVRGMAQLGDNGYWAEMEYSEG-------YVATASLDKDAYALKCK-------GDSMKP 249
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
+ G+ ++L + GD +LIK + G ++ K + I L+S N + +VE
Sbjct: 250 RIKDGEYVVLEPNQPIAPGDEVLIKAKDGRVMVKEFVYEAQGKIYLLSTNEAHGKISVER 309
Query: 210 SDIEWIARILW 220
++IE + + W
Sbjct: 310 ANIEHMHYVGW 320
>gi|186476666|ref|YP_001858136.1| putative phage repressor [Burkholderia phymatum STM815]
gi|184193125|gb|ACC71090.1| putative phage repressor [Burkholderia phymatum STM815]
Length = 331
Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 25/221 (11%)
Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL--------DL 75
PS +A LDPT+ +R + + E++ + AA + L L
Sbjct: 101 PSEIATPDNLDPTTLTGPQRIRASLGPQNLTAETLASV-AAVGADVASLWLAGQGPEPTL 159
Query: 76 PFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSPHNGIY-- 131
+ + +L G +D P W+ V V + + Y
Sbjct: 160 IQAVALQNTYGVNSVWILKGKGTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWA 219
Query: 132 ------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
++ + + SM P + G+ ++L +N GD +L+K + G
Sbjct: 220 EIEYGEGYVATASLDKDAYAVRCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGR 279
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
++ K + I L+S N + +VE ++IE + + W
Sbjct: 280 VMVKEFVYEAQGKIFLLSTNEAHGKISVERANIEHMHYVGW 320
>gi|26990601|ref|NP_746026.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440]
gi|24985584|gb|AAN69490.1|AE016583_14 transcriptional regulator, Cro/CI family [Pseudomonas putida
KT2440]
Length = 215
Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 30/214 (14%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
I NLT LA + G+D TS + +R +G T I +I + + L
Sbjct: 7 IKAARAHANLTQGQLATQVGMDQTSISNLERGKSQG------TSYIAQIASVCGVSALWL 60
Query: 73 LDLPFS---------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
+ S G + I ++ G+ G++ W
Sbjct: 61 AEGTGSMLHSVSNVMPGPPIISPTRRIEIVGTAQLGNDGYW--VGLDVAEGWVET----- 113
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
S YA+ + + SM P R G I + ++ G+ +++ G + K
Sbjct: 114 WSRDEDAYAL-------RLKGDSMAPAIRSGWIAVCEPNHRLVPGEYVMVTTVDGQSMVK 166
Query: 184 VLISRRGRSIDLMSLNCCY-PVDTVEMSDIEWIA 216
L+ ++L S+N Y + +DIE I
Sbjct: 167 ELLFENEEGVNLASVNAAYGERRVIAWADIEKIH 200
>gi|171911475|ref|ZP_02926945.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136]
Length = 261
Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P + + IPL+ + +G G + D + V + + +A
Sbjct: 122 PQVETTKGVGPARYIPLIGYSQAGIGNYED--------LYEHESVIAFGTTDSKAFA--- 170
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK---PRTGDIVAKVLISR-RGR 191
+ + SM P Y +GDIL ++ GD +L K GD++ K+ SR G+
Sbjct: 171 ----TRLRGDSMEPKYSEGDILYVSPNATPKNGDIVLAKVDEAHGGDVMCKLYSSRDGGK 226
Query: 192 SIDLMSLNCCYPVDTVEMS 210
+I L S N YP S
Sbjct: 227 NIVLSSYNAAYPPMEFSRS 245
>gi|300918422|ref|ZP_07135020.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
gi|300414397|gb|EFJ97707.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
Length = 229
Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 35/209 (16%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
AE ++P+ L++ G + S R + R KI A + L
Sbjct: 29 AFAELCGISPAQLSQLLGGN------SHRNIGDKMAR--------KIEQALDRPFGWLDS 74
Query: 75 LPFSDGR-------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ G + +P++ G G D W +
Sbjct: 75 PHNAPGSIKSELEYVGSVRPGAVPVVGEAILGIDGMIDM--LEIHAGWLQI--------- 123
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
Y+ K + SM P + G+ +++ QV+ GD + ++ + G + K++
Sbjct: 124 ---YSADRDAYGLKVKGDSMWPRIQSGEYVVIEPNTQVHTGDEVFVRTKDGHNMIKIMSK 180
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
R S+N + T+ IE +
Sbjct: 181 TRDGDYQFSSVNSDHRPITLSPDSIEKMH 209
>gi|324114073|gb|EGC08046.1| peptidase S24 [Escherichia fergusonii B253]
Length = 189
Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
+ +P++ G G D F +G W IY+
Sbjct: 40 AGATDHLEFAGNVRAGFVPVIGEAVLGVDGSVDMIEFRSG--W------------LSIYS 85
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
K + SM P + G+ +++ V+ GD + ++ + G + K++ R
Sbjct: 86 GDKDAYGLKVKGDSMWPRIQSGEYVVIEPNTPVHPGDEVFVRTKDGHNMIKIMNKTRDGD 145
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIA 216
S+N + T+ + +++ +
Sbjct: 146 YQFSSINSDHRPITLPVEEVDKMH 169
>gi|237704871|ref|ZP_04535352.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226901237|gb|EEH87496.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315288265|gb|EFU47664.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
Length = 228
Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
+ +P++ G G D F +G W IY+
Sbjct: 79 AGATDHLEFAGNVRAGFVPVIGEAVLGVDGSVDMIEFRSG--W------------LSIYS 124
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
K + SM P + G+ +++ V+ GD + ++ + G + K++ R
Sbjct: 125 GDKDAYGLKVKGDSMWPRIQSGEYVVIEPNTPVHPGDEVFVRTKDGHNMIKIMNKTRDGD 184
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIA 216
S+N + T+ + +++ +
Sbjct: 185 YQFSSINSDHRPITLPVEEVDKMH 208
>gi|113461549|ref|YP_719618.1| repressor protein [Haemophilus somnus 129PT]
gi|112823592|gb|ABI25681.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 211
Score = 77.3 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 20/180 (11%)
Query: 48 GRNRWPSTESIFKILAATNET--ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
GR R P+ + K+L AT I K+ + ++ G+ G D
Sbjct: 40 GR-RSPNFMEVAKMLNATGTDQVILNSDGTIEDIEFIGIPKKGLVKVIGEATMGTDGSVD 98
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
G +I + + + + + +SM P G+ +++
Sbjct: 99 IEEIHVG-------YIDIFTTDPKAFCL-------RVKGSSMEPRIHSGEFVLVEPQSPF 144
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWAS 222
+ GD + I+ + G + K+L ++ S+N + + + ++E ++A IL S
Sbjct: 145 SNGDDVFIRTKDGKNMIKILDYQKDGEYRFSSINNDHKPFNLAIDEVELVYYVAGILKKS 204
>gi|110633546|ref|YP_673754.1| putative phage repressor [Mesorhizobium sp. BNC1]
gi|110284530|gb|ABG62589.1| putative phage repressor [Chelativorans sp. BNC1]
Length = 230
Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 24/216 (11%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-RWPSTESIFKILAATN 66
I E ID LT S A+ AGL ++ +R G+ ST ++ K+
Sbjct: 4 DILERIDERLAEVGLTESRAAKMAGLSDSAIRDMRRAVKSGKEDAGVSTRTLAKLAPVLQ 63
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+ LL G + + +P++ + +G+ ++ V PE
Sbjct: 64 TSAEWLL-----TGGPEGIRSRTVPIMGYLGAGAE---------VEPEYEQVP-PEGLDQ 108
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNC--GDRLLIKPRTGDIVA 182
+ +++ + K + SMLP+Y+ G ++I+ S ++ G+ ++ G
Sbjct: 109 VDVPFSVPDEMIAFKVRGDSMLPVYKDGAVIIVYSEQKKPLHSFYGEEAAVRTSDGRRFI 168
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
K ++ +++L+S N +E +EWI I
Sbjct: 169 KTIMRGPDDTVNLLSHNASP----IEGVRLEWIGEI 200
>gi|209552478|ref|YP_002284393.1| putative repressor cI [Pseudomonas phage PAJU2]
gi|209528751|dbj|BAG75043.1| putative repressor cI [Pseudomonas phage PAJU2]
Length = 234
Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 78/203 (38%), Gaps = 22/203 (10%)
Query: 27 LARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
L++++G+ ++ ++ R + G + + ++I ++ + + L
Sbjct: 41 LSKRSGVAQSTISRIVRGDSDTGVD---TLDAIARVFKVDSSDLVD-AGLIDKLQGQNTN 96
Query: 86 KEKE------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+ +PL+ + + G F + +P +A+
Sbjct: 97 IKGTSGLTDPVPLISWVQA---GMFTEAIDNFAPGDAEELLPCPFPHSERSFAL------ 147
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SMLP YR G+I++++ + G ++++ G K + LM+LN
Sbjct: 148 -RVHGESMLPDYRDGEIILVDPDLAYKHGSDVVVRTPDGSTTFKRIQ-ITQDGTYLMALN 205
Query: 200 CCYPVDTVEMSDIEWIARILWAS 222
+P +E+ + I ++ AS
Sbjct: 206 PSFPSRYIEIPEDTRICGVVIAS 228
>gi|160898658|ref|YP_001564240.1| putative phage repressor [Delftia acidovorans SPH-1]
gi|160364242|gb|ABX35855.1| putative phage repressor [Delftia acidovorans SPH-1]
Length = 236
Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+ ++ +IP++ G GF++ +P + Y+
Sbjct: 97 AGYPKHQKSKIPVVGTAKMGDDGFYEEFS----------AIPGAGDGYVEHYSDDKSAYC 146
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ + SM P R G +I+ + G+ +LIK G + K + RR SI+LMS+N
Sbjct: 147 LRVKGMSMFPAIRDGWYVIVEPNSNPSEGEYVLIKKSDGRRMVKEFLFRRSGSIELMSVN 206
Query: 200 CCYPVDTVEMSDI 212
T+EM +I
Sbjct: 207 GG-ARLTLEMHEI 218
>gi|218460494|ref|ZP_03500585.1| putative phage-related transcriptional regulator protein
[Rhizobium etli Kim 5]
Length = 36
Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/36 (80%), Positives = 34/36 (94%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF 38
SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSF
Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSF 36
>gi|171915361|ref|ZP_02930831.1| phage repressor [Verrucomicrobium spinosum DSM 4136]
Length = 283
Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 36/181 (19%)
Query: 58 IFKILAATNETICQLLDLPFS------------------DGRTTEKKEKEIPLLYFPPSG 99
I K+ A + L+ + K + +PL+ F +G
Sbjct: 103 IKKVATALDVPFEDLMQGVEPGFIDESGLTGTLGASPNVELGPGIKTARYVPLISFAQAG 162
Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
G ++ + + H + + SM+P+ GD+ IL
Sbjct: 163 KMGSWEDAAY-------------EYTGHIAFDMTDPKAFGVTIRGDSMVPVINDGDVAIL 209
Query: 160 NSAIQVNCGDRLLIKP---RTGDIVAKVLISRRGRS-IDLMSLNCC-YPVDTVEMSDIEW 214
+ G+ ++ + G ++ KV + + + L S N +P D W
Sbjct: 210 VPSSAPRGGEVVVARLSEEAGGGVMCKVYTPKDAGAKVVLTSYNSAVHPPLEFRREDFVW 269
Query: 215 I 215
+
Sbjct: 270 L 270
>gi|301381627|ref|ZP_07230045.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
tomato Max13]
Length = 232
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
F G + I ++ G G++ T + W S YA+
Sbjct: 91 FEVGPPITSPTRRIAIVGTAQLGPDGYW--AGLDTTDGWVET-----WSRDEDAYAL--- 140
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ + SM P R G + + + ++ G+ +++K G + K L+ + LM
Sbjct: 141 ----RLKGDSMAPAIRSGWVAVCEPSHRLVPGEYVMVKLCDGQSMVKELLFETEDGVSLM 196
Query: 197 SLNCCYPVD-TVEMSDIEWIARI 218
S+N Y T+ SDIE RI
Sbjct: 197 SVNSAYGERTTLSWSDIE---RI 216
>gi|323190855|gb|EFZ76122.1| peptidase S24-like family protein [Escherichia coli RN587/1]
Length = 234
Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 22/209 (10%)
Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
A++ ++PS L + +G KS R + + + A LDL
Sbjct: 30 ADKLGVSPSQLTQVSG------EKSTRNIGD---------KLARKFEAALGLPNGWLDLV 74
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+ + + G + + + E R IY+
Sbjct: 75 HDVTPIASCSD-SLTFVGQVRKGLVRVVGEAILGVDGA---IEMTEERDGWLNIYSDDPD 130
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ + SM P + G+ +++ +V GD + ++ G + KVL R
Sbjct: 131 AFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGEYQFT 190
Query: 197 SLNCCYPVDTVE---MSDIEWIARILWAS 222
S+N + T+ ++ +E++A IL S
Sbjct: 191 SINQDHRPITLPYHQVAKVEYVAGILKQS 219
>gi|157166008|ref|YP_001449260.1| putative repressor protein CI [Phage BP-4795]
gi|260854732|ref|YP_003228623.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
11368]
gi|7239814|gb|AAD04644.2| cI protein [Enterobacteria phage H-19B]
gi|49523607|emb|CAD88825.1| putative repressor protein CI [Enterobacteria phage BP-4795]
gi|257753381|dbj|BAI24883.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
11368]
gi|282935423|gb|ADB03775.1| putative repressor CI [Enterobacteria phage ST2-8624]
gi|323157451|gb|EFZ43562.1| peptidase S24-like family protein [Escherichia coli EPECa14]
Length = 234
Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 22/209 (10%)
Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
A++ ++PS L + +G KS R + + + A LDL
Sbjct: 30 ADKLGVSPSQLTQVSG------EKSTRNIGD---------KLARKFEAALGLPNGWLDLV 74
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+ + + G + + + E R IY+
Sbjct: 75 HDVTPIASCSD-SLTFVGQVRKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPD 130
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ + SM P + G+ +++ +V GD + ++ G + KVL R
Sbjct: 131 AFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGEYQFT 190
Query: 197 SLNCCYPVDTVE---MSDIEWIARILWAS 222
S+N + T+ ++ +E++A IL S
Sbjct: 191 SINQDHRPITLPYHQVAKVEYVAGILKQS 219
>gi|213970585|ref|ZP_03398712.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
tomato T1]
gi|213924756|gb|EEB58324.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
tomato T1]
Length = 218
Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
F G + I ++ G G++ T + W S YA+
Sbjct: 77 FEVGPPITSPTRRIAIVGTAQLGPDGYW--AGLDTTDGWVET-----WSRDEDAYAL--- 126
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ + SM P R G + + + ++ G+ +++K G + K L+ + LM
Sbjct: 127 ----RLKGDSMAPAIRSGWVAVCEPSHRLVPGEYVMVKLCDGQSMVKELLFETEDGVSLM 182
Query: 197 SLNCCYPVD-TVEMSDIEWIARI 218
S+N Y T+ SDIE RI
Sbjct: 183 SVNSAYGERTTLSWSDIE---RI 202
>gi|324114308|gb|EGC08278.1| peptidase S24 [Escherichia fergusonii B253]
Length = 235
Score = 71.9 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A L +S SK F E R ++ K L ++ L
Sbjct: 30 GMAIARALSLSSKGVSKWFNAESLPRQEKMNALAKFLNV------DVVWLQHGTSLNGAN 83
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
E + + G + + + E R IY+ + +
Sbjct: 84 DEDTLSFVGKLKKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPDAFGLRVKGD 140
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + K+L R S+N +
Sbjct: 141 SMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKILGYDRDGEYQFTSINQDHRPI 200
Query: 206 TVE---MSDIEWIARILWAS 222
T+ ++ +E++A IL S
Sbjct: 201 TLPYHQVAKVEYVAGILKQS 220
>gi|253991045|ref|YP_003042401.1| hypothetical protein PAU_03571 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782495|emb|CAQ85659.1| Hypothetical Protein PAU_03571 [Photorhabdus asymbiotica]
Length = 228
Score = 71.9 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 27/214 (12%)
Query: 14 DRMA---ERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
DR+A ++ L G +A+ G+ P + SK W + ES+ + AT
Sbjct: 13 DRLALACKKFGLDEHGRGVAIAKALGVTPKA--ASK---------WFNAESLPR--QATM 59
Query: 67 ETICQLLDLPFS----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
+ I L + + ++ ++ G + + V
Sbjct: 60 KGIADYLRVDLAWLQLGIVKNADEQGKVEYAGKLKDGLVRVVGEAILGIDGAVDMVEFHA 119
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
K + SM P + G+ +++ V+ GD + ++ R G +
Sbjct: 120 GWLRICSS---DRDAYGLKVKGDSMWPRIQSGEFVVIEPNTLVHPGDEVFVRTRNGHNMI 176
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
K++ R S+N + T+ D+ I
Sbjct: 177 KIMNITRNGDYQFSSINSDHRPITIPKDDVAMIH 210
>gi|9632491|ref|NP_049485.1| repressor protein CI [Enterobacteria phage 933W]
gi|15800947|ref|NP_286963.1| putative repressor protein CI of bacteriophage BP-933W [Escherichia
coli O157:H7 EDL933]
gi|20065916|ref|NP_612999.1| CI protein [Stx2 converting phage I]
gi|116222055|ref|YP_794110.1| repressor protein CI [Stx2-converting phage 86]
gi|168748269|ref|ZP_02773291.1| CI protein [Escherichia coli O157:H7 str. EC4113]
gi|168758909|ref|ZP_02783916.1| CI protein [Escherichia coli O157:H7 str. EC4401]
gi|168772853|ref|ZP_02797860.1| CI protein [Escherichia coli O157:H7 str. EC4196]
gi|168780276|ref|ZP_02805283.1| CI protein [Escherichia coli O157:H7 str. EC4076]
gi|168788900|ref|ZP_02813907.1| CI protein [Escherichia coli O157:H7 str. EC869]
gi|170783635|ref|YP_001648917.1| repressor protein CI [Enterobacteria phage Min27]
gi|195938673|ref|ZP_03084055.1| hypothetical protein EscherichcoliO157_19988 [Escherichia coli
O157:H7 str. EC4024]
gi|208808906|ref|ZP_03251243.1| CI protein [Escherichia coli O157:H7 str. EC4206]
gi|208811918|ref|ZP_03253247.1| CI protein [Escherichia coli O157:H7 str. EC4045]
gi|208821053|ref|ZP_03261373.1| CI protein [Escherichia coli O157:H7 str. EC4042]
gi|209398778|ref|YP_002271815.1| repressor protein CI [Escherichia coli O157:H7 str. EC4115]
gi|254794287|ref|YP_003079124.1| putative repressor protein CI [Escherichia coli O157:H7 str.
TW14359]
gi|260847212|ref|YP_003224990.1| phage repressor protein CI [Escherichia coli O103:H2 str. 12009]
gi|260867233|ref|YP_003233635.1| putative repressor protein [Escherichia coli O111:H- str. 11128]
gi|261227993|ref|ZP_05942274.1| putative repressor protein CI [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258715|ref|ZP_05951248.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966]
gi|300940488|ref|ZP_07155062.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|331645938|ref|ZP_08347041.1| putative repressor protein CI of bacteriophage [Escherichia coli
M605]
gi|4585402|gb|AAD25430.1|AF125520_25 repressor protein CI [Enterobacteria phage 933W]
gi|12514300|gb|AAG55574.1|AE005295_14 putative repressor protein CI of bacteriophage BP-933W [Escherichia
coli O157:H7 str. EDL933]
gi|19911708|dbj|BAB87968.1| CI protein [Stx2 converting phage I]
gi|115500865|dbj|BAF34095.1| repressor protein CI [Stx2-converting phage 86]
gi|145312373|gb|ABP57827.1| repressor Cl [Enterobacteria phage phi24B]
gi|163955729|gb|ABY49879.1| repressor protein CI [Enterobacteria phage Min27]
gi|187771028|gb|EDU34872.1| CI protein [Escherichia coli O157:H7 str. EC4196]
gi|188017192|gb|EDU55314.1| CI protein [Escherichia coli O157:H7 str. EC4113]
gi|189002185|gb|EDU71171.1| CI protein [Escherichia coli O157:H7 str. EC4076]
gi|189354375|gb|EDU72794.1| CI protein [Escherichia coli O157:H7 str. EC4401]
gi|189371399|gb|EDU89815.1| CI protein [Escherichia coli O157:H7 str. EC869]
gi|208728707|gb|EDZ78308.1| CI protein [Escherichia coli O157:H7 str. EC4206]
gi|208733195|gb|EDZ81882.1| CI protein [Escherichia coli O157:H7 str. EC4045]
gi|208741176|gb|EDZ88858.1| CI protein [Escherichia coli O157:H7 str. EC4042]
gi|209160178|gb|ACI37611.1| repressor protein CI [Escherichia coli O157:H7 str. EC4115]
gi|254593687|gb|ACT73048.1| putative repressor protein CI [Escherichia coli O157:H7 str.
TW14359]
gi|257762359|dbj|BAI33856.1| phage repressor protein CI [Escherichia coli O103:H2 str. 12009]
gi|257763589|dbj|BAI35084.1| putative repressor protein [Escherichia coli O111:H- str. 11128]
gi|282935426|gb|ADB03777.1| putative repressor CI [Enterobacteria phage 32deltatox]
gi|282935429|gb|ADB03779.1| putative repressor CI [Enterobacteria phage 27deltatox]
gi|282935432|gb|ADB03781.1| putative repressor CI [Enterobacteria phage 22deltatox]
gi|300454719|gb|EFK18212.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|315619731|gb|EFV00251.1| helix-turn-helix family protein [Escherichia coli 3431]
gi|331044690|gb|EGI16817.1| putative repressor protein CI of bacteriophage [Escherichia coli
M605]
Length = 235
Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A L +S SK F E R ++ K L ++ L
Sbjct: 30 GMAIARALSLSSKGVSKWFNAESLPRQEKMNALAKFLNV------DVVWLQHGTSLNGAN 83
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
E + + G + + + E R IY+ + +
Sbjct: 84 DEDTLSFVGKLKKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPDAFGLRVKGD 140
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + KVL R S+N +
Sbjct: 141 SMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGEYQFTSINQDHRPI 200
Query: 206 TVE---MSDIEWIARILWAS 222
T+ ++ +E++A IL S
Sbjct: 201 TLPYHQVAKVEYVAGILKQS 220
>gi|170768934|ref|ZP_02903387.1| CI protein [Escherichia albertii TW07627]
gi|170122006|gb|EDS90937.1| CI protein [Escherichia albertii TW07627]
Length = 250
Score = 71.5 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A L +S SK F E R ++ K L ++ L
Sbjct: 45 GMAIARALSLSSKGVSKWFNAESLPRQEKMNALAKFLNV------DVVWLQHGTSLNGAN 98
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
E + + G + + + E R IY+ + +
Sbjct: 99 DEDTLSFVGKLKKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPDAFGLRVKGD 155
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + K+L R S+N +
Sbjct: 156 SMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNMIKILGYDRDGEYQFTSINQDHRPI 215
Query: 206 TVE---MSDIEWIARILWAS 222
T+ ++ +E++A IL S
Sbjct: 216 TLPYHQVAKVEYVAGILKQS 235
>gi|218549402|ref|YP_002383193.1| repressor protein of bacteriophage origin [Escherichia fergusonii
ATCC 35469]
gi|218356943|emb|CAQ89575.1| repressor protein of bacteriophage origin [Escherichia fergusonii
ATCC 35469]
Length = 235
Score = 71.5 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A L +S SK F E R ++ K L ++ L
Sbjct: 30 GMAIARALSLSSKGVSKWFNAESLPRQEKMNALAKFLNV------DVVWLQHGTSLNGAN 83
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
E + + G + + + E R IY+ + +
Sbjct: 84 DEDTLSFVGKLKKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPDAFGLRVKGD 140
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + K+L R S+N +
Sbjct: 141 SMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNMIKILGYDRDGEYQFTSINQDHRPI 200
Query: 206 TVE---MSDIEWIARILWAS 222
T+ ++ +E++A IL S
Sbjct: 201 TLPYHQVAKVEYVAGILKQS 220
>gi|301019520|ref|ZP_07183686.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
gi|299882171|gb|EFI90382.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
Length = 229
Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A L +S SK F E R ++ K L ++ L
Sbjct: 24 GMAIARALSLSSKGVSKWFNAESLPRQEKMNALAKFLNV------DVVWLQHGTSLNGAN 77
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
E + + G + + + E R IY+ + +
Sbjct: 78 DEDTLSFVGKLKKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPDAFGLRVKGD 134
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + KVL R S+N +
Sbjct: 135 SMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGEYQFTSINQDHRPI 194
Query: 206 TVE---MSDIEWIARILWAS 222
T+ ++ +E++A IL S
Sbjct: 195 TLPYHQVAKVEYVAGILKQS 214
>gi|221196208|ref|ZP_03569255.1| phage repressor [Burkholderia multivorans CGD2M]
gi|221202882|ref|ZP_03575901.1| phage repressor [Burkholderia multivorans CGD2]
gi|221176816|gb|EEE09244.1| phage repressor [Burkholderia multivorans CGD2]
gi|221182762|gb|EEE15162.1| phage repressor [Burkholderia multivorans CGD2M]
Length = 230
Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 21/145 (14%)
Query: 81 RTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+ + +PL+ +G D FP G + + + +A++
Sbjct: 89 APAQVGSRRVPLISSVQAGRMTEAVDP--FPPGGAFEYLL--TDLDLSDYAFALE----- 139
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSID 194
+ SM P + GD +I++ AIQ GD ++ K + K +R + +
Sbjct: 140 --IEGLSMAPDFNPGDRIIIDPAIQPRPGDFVVAKNGREEATFKKYRARGVGADGREAFE 197
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
L+ LN YP + E + RI+
Sbjct: 198 LIPLNPDYPTISSEHEQV----RII 218
>gi|161504556|ref|YP_001571668.1| hypothetical protein SARI_02669 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865903|gb|ABX22526.1| hypothetical protein SARI_02669 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 236
Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 11/200 (5%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A LD +S SK F E R ++ L + S ++T
Sbjct: 30 GIAIARALDVSSKGVSKWFNAESLPRQEKMNALANFLKV-----DVVWLQHGSVRQSTTT 84
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ + + G + + + E R IY+ + + +
Sbjct: 85 DPQSLTFVGQLRKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPEAFGLRVKGD 141
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + KVL R S+N +
Sbjct: 142 SMWPRIKSGEYVLIEPNTKVCPGDEVFVRTIEGHNMIKVLGYDRDGEYQFTSINQDHRPI 201
Query: 206 TVE---MSDIEWIARILWAS 222
T+ +S +E++A IL S
Sbjct: 202 TLPYYEVSKVEYVAGILKQS 221
>gi|215485810|ref|YP_002328241.1| predicted repressor protein [Escherichia coli O127:H6 str.
E2348/69]
gi|218704626|ref|YP_002412145.1| repressor protein of bacteriophage origin [Escherichia coli UMN026]
gi|293404507|ref|ZP_06648501.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298380285|ref|ZP_06989890.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|300896678|ref|ZP_07115193.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
gi|215263882|emb|CAS08220.1| predicted repressor protein [Escherichia coli O127:H6 str.
E2348/69]
gi|218431723|emb|CAR12605.1| repressor protein of bacteriophage origin [Escherichia coli UMN026]
gi|291429093|gb|EFF02118.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298279983|gb|EFI21491.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|300359470|gb|EFJ75340.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
Length = 235
Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%)
Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
G+A L +S SK F E R ++ K L ++ L
Sbjct: 30 GMAIARALSLSSKGVSKWFNAESLPRQEKMNALAKFLNV------DVVWLQHGTSLNGAN 83
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
E ++ G + + + E R IY+ + +
Sbjct: 84 DEDTFSIVGKLKKGLVRVVGEAILGVDGA---IEMTEERDGWLKIYSDDPDAFGLRVKGD 140
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P + G+ +++ +V GD + ++ G + KVL R S+N +
Sbjct: 141 SMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNMIKVLGYDRDGEYQFTSINQDHRPI 200
Query: 206 TVE---MSDIEWIARILWAS 222
T+ ++ +E++A IL S
Sbjct: 201 TLPYHQVAKVEYVAGILKQS 220
>gi|299529267|ref|ZP_07042709.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44]
gi|298722745|gb|EFI63660.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44]
Length = 120
Score = 70.7 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
Q + + SM P YR G+ +++ +I+ G +++K G + K L RG I
Sbjct: 25 DPQAYALRIKGDSMHPRYRAGEFVVVTPSIEAQPGRDVVVKLHDGKCLLKELNWIRGDEI 84
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218
L+S+N Y T+ D+E + R+
Sbjct: 85 QLLSINNGYAPMTISKEDVECVCRV 109
>gi|85374557|ref|YP_458619.1| putative transcriptional regulator, repressor [Erythrobacter
litoralis HTCC2594]
gi|84787640|gb|ABC63822.1| putative transcriptional regulator, repressor [Erythrobacter
litoralis HTCC2594]
Length = 220
Score = 70.7 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
IP L + G F P ++ G +G + + SM
Sbjct: 91 AIPRLSIAVAAGPGQFAGDESP----FDNFGFSGRWLRDHGFD--PKMLSSVTVEGDSME 144
Query: 149 PLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
PL R GD +++ + + G ++ ++ K L I L+S N YP
Sbjct: 145 PLLRDGDEILVDRSPG-PLRDGIHVV--RLGETLMVKRLSRSGQGRISLLSQNLAYPPLD 201
Query: 207 VEMSDIEWIARILWAS 222
+ + D+E I R++W S
Sbjct: 202 MALEDVEVIGRVVWKS 217
>gi|190149742|ref|YP_001968267.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307263053|ref|ZP_07544675.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|189914873|gb|ACE61125.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|306871679|gb|EFN03401.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 225
Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 48 GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
GR R P+ + + K+L + SDG T E+ ++ P G
Sbjct: 40 GR-RTPNFDDVAKMLNVVGVD----QVILNSDGLITTLDNDELEIIGKPK---DGIIPVV 91
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
T + TV + E+R+ + +Y+ + + +SM P + G+ +++
Sbjct: 92 GEATMGRDETVRLEELRTGYINLYSADPDAYAVRGKGSSMEPRIKSGEYIVIEPNTPPMN 151
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWA 221
GD +LI G + K L R S+N + + +++ I I+ A
Sbjct: 152 GDDVLICTIAGQYMIKTLDWHRDGEYRFSSINNAHQPFNLPENEVVNIHTVGAIVKA 208
>gi|307251335|ref|ZP_07533252.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306856641|gb|EFM88780.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 225
Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 48 GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
GR R P+ + + K+L + SDG T E+ ++ P G
Sbjct: 40 GR-RTPNFDDVAKMLNVVGVD----QVILNSDGLITTLDNDELEIIGKPK---DGIIPVV 91
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
T + TV + E+R+ + +Y+ + + +SM P + G+ +++
Sbjct: 92 GEATMGRDETVRLEELRTGYINLYSADPDAYAVRGKGSSMEPRIKSGEYIVIEPNTPPMN 151
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWA 221
GD +LI G + K L R S+N + + +++ I I+ A
Sbjct: 152 GDDVLICTIAGQYMIKTLDWHRDGEYRFSSINNSHQPFNLPENEVVNIHTVGAIVKA 208
>gi|227356913|ref|ZP_03841292.1| repressor protein CI [Proteus mirabilis ATCC 29906]
gi|227162983|gb|EEI47928.1| repressor protein CI [Proteus mirabilis ATCC 29906]
Length = 213
Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 6/154 (3%)
Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
+ + +P T + ++ E+ + PSG + + S
Sbjct: 46 LERDYGMPIGYLDTQDIQDDEVEFIGKIPSGLVKVRGEAFLGVDGAVDMIE---AHSGWL 102
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
IY+ K + SM P + G+ +++ V GD + ++ G + K+
Sbjct: 103 KIYSDDVDAYGLKVKGDSMWPRIQSGEYVVVEPNTSVKTGDEVFVRTIDGHNMIKIFNKT 162
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
R S+N + T+ ++ ++A I+
Sbjct: 163 RDGDYQFTSINNSHKPITLSPDQVDTIHYVAAIV 196
>gi|325529755|gb|EGD06606.1| putative phage repressor [Burkholderia sp. TJI49]
Length = 212
Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 82 TTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
+ + +PL+ +G D FP G + + + +A++
Sbjct: 72 PAQVGSRRVPLISSVQAGRMTEAVDP--FPPGGAFEYLL--TDLDLSDYAFALE------ 121
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDL 195
+ SM P + GD +I++ AIQ GD ++ K + K +R + +L
Sbjct: 122 -IEGLSMAPDFNPGDRIIIDPAIQPRPGDFVVAKNGREEATFKKYRARGVGADGREAFEL 180
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
+ LN YP + E + RI+
Sbjct: 181 IPLNPDYPTISSEHERV----RII 200
>gi|212499706|ref|YP_002308514.1| cI [Bacteriophage APSE-2]
gi|211731675|gb|ACJ10163.1| cI [Bacteriophage APSE-2]
Length = 232
Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+L G GG+++S G+ + + P + +A+ + Q SM+P
Sbjct: 102 VPVLGTTQLGGGGYWNSKESSAGHDYGYIIWP---TEDRDAFAL-------RCQGESMMP 151
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
+ G+ +++ + GD +L++ G ++ K + +R + L+S+N +P +
Sbjct: 152 RIQHGEFVVMEPNHKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAA 211
Query: 210 SDIE 213
S IE
Sbjct: 212 STIE 215
>gi|238898738|ref|YP_002924420.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466498|gb|ACQ68272.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 260
Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+L G GG+++S G+ + + P + +A+ + Q SM+P
Sbjct: 130 VPVLGTTQLGGGGYWNSKESSAGHDYGYIIWP---TEDRDAFAL-------RCQGESMMP 179
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
+ G+ +++ + GD +L++ G ++ K + +R + L+S+N +P +
Sbjct: 180 RIQHGEFVVMEPNHKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAA 239
Query: 210 SDIE 213
S IE
Sbjct: 240 STIE 243
>gi|171910721|ref|ZP_02926191.1| hypothetical protein VspiD_06095 [Verrucomicrobium spinosum DSM
4136]
Length = 407
Score = 68.8 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 22/192 (11%)
Query: 43 RFGIE--GRNRWPSTESIFKILAATNETICQL-----LDLPFSDGRTTEKKEKEIPLLYF 95
R + G+ R E + + A + L L S G + + P
Sbjct: 210 RQNADLNGKPR--DVEPVSRGFAIAGAALETLSRAQIASLQNSGGAHAAQPTRLTPRASG 267
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEI------RSPHNGIYAIQTQDTRHKTQDTSMLP 149
+ F + P +P H Q + +M P
Sbjct: 268 VQVEAP-VFSARSVPLLAMHEAADLPTPAVAAHHGRQHLAFVVEDEQAFAVRINGEAMAP 326
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-----RRGRSIDLMSLNCCYPV 204
Y +G I I+ + GD +L + R + ++ + G S+ L S + YP
Sbjct: 327 HYPEGCIAIICPGLPSRNGDLVLARLRD-ERGGGTILRLVHFIQDGESLVLTSTHAAYPP 385
Query: 205 DTVEMSDIEWIA 216
TV+ D+ W+A
Sbjct: 386 LTVQKEDLLWLA 397
>gi|222875118|gb|EEF12249.1| predicted protein [Populus trichocarpa]
Length = 220
Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 37/84 (44%)
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I+ + + + +SM P G+ +++ + GD + I+ + G + K+L ++
Sbjct: 19 IFTTDPKAFCLRVKGSSMEPRIHSGEFVLVEPQSPFSNGDDVFIRTKDGKNMIKILDYQK 78
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIE 213
S+N + + + ++E
Sbjct: 79 DGEYRFSSINNDHKPFNLAIDEVE 102
>gi|296282441|ref|ZP_06860439.1| putative transcriptional regulator, repressor [Citromicrobium
bathyomarinum JL354]
Length = 231
Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
IP L + G F +G P ++ G NG + + SM
Sbjct: 102 AIPRLSLAAAAGPGQFANGEAP----FDNFGFSGRWLRENGFD--PKMLSALTVEGDSME 155
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
PL R GD ++++ + D + + ++ K L S I L+S N YP V
Sbjct: 156 PLLRHGDEILIDRGSRFER-DGVHVVRMGDTLMVKRLASAGAGRIALLSQNLAYPPVEVG 214
Query: 209 MSDIEWIARILWAS 222
+ +IE + R++W S
Sbjct: 215 LDEIEVLGRVVWKS 228
>gi|330816008|ref|YP_004359713.1| putative phage repressor [Burkholderia gladioli BSR3]
gi|327368401|gb|AEA59757.1| putative phage repressor [Burkholderia gladioli BSR3]
Length = 249
Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRS 125
++ + K + + ++ G + G +P G I
Sbjct: 95 TSLSDTFSPSLLHYPVSSKNFRNVFVIGRAQGGLPERIWTDGGYPVG----------IAD 144
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+ I SM P + G+ ++ A + + D +L++ +G + K L
Sbjct: 145 EYAEIATADPHAFLVPVVGGSMAPRFNPGEFALIEPATEPDIEDDVLVRLASGVTMLKRL 204
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
+SRRG I L S T +I W+
Sbjct: 205 LSRRGGMIRLGSY-AEAETHTFAPEEISWM 233
>gi|284007338|emb|CBA72703.1| phage transcriptional regulator [Arsenophonus nasoniae]
Length = 232
Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 56 ESIFKILAATNETIC-QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
E ++K L+ TN + + ++P+L G GG+++S +
Sbjct: 67 ELLYKDLSTTNISEERDTTSFTRIELNAIPFNFCKVPVLGTTQLGGGGYWNSKESSIEHD 126
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ + P + +A+ + Q SM+P + G+ +++ + GD +L++
Sbjct: 127 YGYIVWP---TEDKDAFAL-------RCQGESMMPRIQHGEFVVMEPNYKYKPGDEVLVQ 176
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
G ++ K + +R I L+S+N +P + S I ++A I S
Sbjct: 177 DDNGQVMVKTFLYQRDDVIHLLSINADHPPIRLAASTIKKIIYVAGIAKDS 227
>gi|319789030|ref|YP_004150663.1| transcriptional regulator, XRE family [Thermovibrio ammonificans
HB-1]
gi|317113532|gb|ADU96022.1| transcriptional regulator, XRE family [Thermovibrio ammonificans
HB-1]
Length = 222
Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 27/215 (12%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+ ++ E L+ S +A++ G+ ++ + ++ G + R + + AT +
Sbjct: 7 LRKLREHLGLSQSKMAKELGVSLKTYQRYEQVGYDIPER------ALRQIEATFNVNPEW 60
Query: 73 LDLPFSDG----------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
L + T E K IPL+ +G G F + V P W VP
Sbjct: 61 LRQGKGEMFRPKTEAQIIATPEFVVKPIPLIAEGEAGFGQFIPNLVEPDKVVW--FPVPT 118
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ H + K SM P +GDI++++ V GD + + G +V
Sbjct: 119 SLANHRLFF--------IKVVGNSMEPRIFEGDIVLVDKDATVGKGDLVAALLKDGTLVV 170
Query: 183 KVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIA 216
K G ++ L S+N YP V ++ IA
Sbjct: 171 KRYWKNNGDGTVVLESINPSYPPIVVRPKELRDIA 205
>gi|37526812|ref|NP_930156.1| hypothetical protein plu2922 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786244|emb|CAE15296.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 212
Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
+ K + ++ G G D F G W + + K
Sbjct: 74 AGKPKNGLVRVIGEAVLGIDGAVDMVEFHAG--WLRIC------------STDHDAYGLK 119
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
+ SM P + G+ +++ V+ GD + ++ G + K++ R S+N
Sbjct: 120 VKGDSMWPRIQSGEFVVIEPNTPVHPGDEVFVRTNNGHNMIKIMNITRNGDYQFSSINSD 179
Query: 202 YPVDTVEMSDIEWIA 216
+ T+ +++ I
Sbjct: 180 HRPITIPKNNVIMIH 194
>gi|9633604|ref|NP_050962.1| P1 [Acyrthosiphon pisum bacteriophage APSE-1]
gi|6118052|gb|AAF04000.1|AF157835_57 P1 [Endosymbiont phage APSE-1]
Length = 260
Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+L G GG+++ G+ + + P + +A+ + Q SM+P
Sbjct: 130 VPVLGTTQLGGGGYWNPKESSAGHDYGYIIWP---TEDRDAFAL-------RCQGESMMP 179
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
+ G+ +++ + GD +L++ G ++ K + +R + L+S+N +P + +
Sbjct: 180 RIQHGEFVVMEPNYKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAV 239
Query: 210 ---SDIEWIARILWAS 222
I ++A I S
Sbjct: 240 PTIEKIIYVAGIAKDS 255
>gi|304393973|ref|ZP_07375897.1| XRE family transcriptional regulator [Ahrensia sp. R2A130]
gi|303293948|gb|EFL88324.1| XRE family transcriptional regulator [Ahrensia sp. R2A130]
Length = 271
Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 26/169 (15%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTV 118
K+ + G T + E+PL +GS + FD + + V
Sbjct: 119 KMAEVYGQAFGVSAAWIL-YGDTKNSLQGEVPLRGKVGAGSEVYVFDDD-----HPMDYV 172
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-----ILNSAIQVNCGDRLLI 173
P + + A++ SM P+Y I+ + + ++ +N R ++
Sbjct: 173 EAPPHATANTS--ALE-------VDGDSMFPVYEDRAIIYYSDNVTDPSVMLNK--RCVV 221
Query: 174 KPRTGDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARILWA 221
K G I+ K L + +L S N +P T+E +EW+A+I W
Sbjct: 222 KLANGRILVKKLRRGTTDELWNLDSFNPAFP--TMEDQIVEWVAKIDWV 268
>gi|319406695|emb|CBI80331.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 200
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
K I + + L+ LA + LD T S RW +ES
Sbjct: 3 KNIIATLQILQSEFGLSQKDLANR--LDVTQATVS---------RWLGSES-----DPRG 46
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+L+L S + +P++ + +G D P + V +P
Sbjct: 47 SHRDAILELYKSLKGYNQITT-LVPVMGYVGAGLEIDTDVEQIPE-DGLEKVEIP----- 99
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNC--GDRLLIKPRTGDIVA 182
+ + + + TSM P+Y+ GD++++ V+ GD +++
Sbjct: 100 ----FDLPFEAIGFMVRGTSMYPVYKDGDLIVVKHLQTKPVSDYYGDEVVVLTEDNRRFI 155
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
K + I L S N ++ I+WI I+
Sbjct: 156 KQITR-SSEGIVLKSWNADP----IKNVKIKWIGEIV 187
>gi|253999361|ref|YP_003051424.1| putative phage repressor [Methylovorus sp. SIP3-4]
gi|253986040|gb|ACT50897.1| putative phage repressor [Methylovorus sp. SIP3-4]
Length = 226
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/215 (20%), Positives = 70/215 (32%), Gaps = 34/215 (15%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN----------- 66
E T + LA G+ + SK G+ S E+I K+ A
Sbjct: 13 EHQGKTQAWLAEFCGVSNNAV--SKWINGSGQI---SRENIRKVANALGLRASELLNTDT 67
Query: 67 -----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGV 120
Q P + +K+ P+ G F N +
Sbjct: 68 DDSITVGFAQEFHFPENSYPVKPEKKGYPPVFGKGMGGLPDRIFTDEGR-VSNGHDEYAE 126
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
+ + + + SM P Y G+ ++ D +LIK TG++
Sbjct: 127 VLSGDDNAFV---------IRVEGNSMFPKYAHGEYALVEPNTVPEIEDDVLIKLSTGEV 177
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
+ K LISRRG I L S N + S+I W+
Sbjct: 178 MLKRLISRRGG-IHLSSYN-ESGTYDFQDSEIVWM 210
>gi|196233812|ref|ZP_03132651.1| putative phage repressor [Chthoniobacter flavus Ellin428]
gi|196222174|gb|EDY16705.1| putative phage repressor [Chthoniobacter flavus Ellin428]
Length = 311
Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 14/135 (10%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
+ +++PL+ + + G+ N E + + K
Sbjct: 179 PSTPGMRKVPLISWAAA-------------GSLHNASAFDEDYDGEAIETNVPGRVFSVK 225
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL-ISRRGRSIDLMSLNC 200
+ SM P GDI ++ S I+ G +L++ GD+ K R + L S+N
Sbjct: 226 IEGDSMYPEINPGDIAVVRSDIEPRPGQVVLVRTLDGDVWCKRYSTRDGNRFVVLSSIND 285
Query: 201 CYPVDTVEMSDIEWI 215
Y + I WI
Sbjct: 286 TYRPFEISAESIAWI 300
>gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
YPIII]
gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis
YPIII]
Length = 209
Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 26/203 (12%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG---IEGRNRWPSTES---IFK 60
+ I + I R E +++ + LA++ G S R G + R S E + K
Sbjct: 2 ETIGQRIKRFREELSISQAELAQRCGWLSQS-----RIGNYETDSRK--VSVEDAVVLAK 54
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L N +L+ + T E+ +PL+ + +G+ F + + V
Sbjct: 55 AL---NVNPGELILGTPDNASFTSAGERYLPLVSYVQAGT--FTEPDNLLSAEG-AKGHV 108
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
+A+ K + SM P +++GD +I++ + + G+ ++ K +
Sbjct: 109 MYDGPISEVAFAL-------KIKGDSMEPEFKEGDTIIIDPMVAPHPGEFVIAKNGDHEA 161
Query: 181 VAKVLISRRGRSIDLMSLNCCYP 203
K + S +L+ LN YP
Sbjct: 162 TFKKYRLKANGSFELVPLNPDYP 184
>gi|160876037|ref|YP_001555353.1| XRE family transcriptional regulator [Shewanella baltica OS195]
gi|160861559|gb|ABX50093.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
Length = 204
Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 24/205 (11%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATN 66
I E + ++ + +T LA TS K +R + + R + E++ K L T
Sbjct: 2 DIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLER--GDTKNPR--NIEALAKALQTTP 57
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRS 125
E + + +PL+ +G W + +P +
Sbjct: 58 E-FLRFGVGDMDNATVVASAGNYLPLISMVQAGV--------------WTEIQELPPLDV 102
Query: 126 PHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAK 183
+ + SMLP +R GD++ ++ QV G ++ + K
Sbjct: 103 ELYPCPIKCSQHSFIVRVEGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQATFK 162
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE 208
LI + L +LN +P VE
Sbjct: 163 QLIIDGNKKY-LKALNPDWPNKFVE 186
>gi|315268235|gb|ADT95088.1| transcriptional regulator, XRE family [Shewanella baltica OS678]
Length = 204
Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 24/205 (11%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATN 66
I E + R+ + +T LA TS K +R + + R + E++ K L T
Sbjct: 2 DIAERVKRLRKALGMTQYELADLVSTAQTSIQKLER--GDTKNPR--NIEALAKALQTTP 57
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRS 125
E + + +PL+ +G W + +P +
Sbjct: 58 E-FLRFGVGELDNATVVASAGNYLPLISMVQAGV--------------WTEIQELPPLDV 102
Query: 126 PHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAK 183
+ + SMLP + +GD++ ++ QV G ++ + K
Sbjct: 103 ELYPCPIKCSQHSFIVRVEGESMLPRFEEGDLIYVDPDAQVENGSYVVARLDDENQATFK 162
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE 208
LI + L +LN +P VE
Sbjct: 163 QLIIDGNKKY-LKALNPDWPNKFVE 186
>gi|254244958|ref|ZP_04938280.1| hypothetical protein PA2G_05837 [Pseudomonas aeruginosa 2192]
gi|126198336|gb|EAZ62399.1| hypothetical protein PA2G_05837 [Pseudomonas aeruginosa 2192]
Length = 221
Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 28/182 (15%)
Query: 39 NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT-----EKKEKEIPLL 93
N SK G + I + + +LDL F G +++P++
Sbjct: 49 NPSKGIGNQ----------IAREIELALSLPKGMLDLSFGPGEQGNAVVLSSTGRKLPVI 98
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
+G P G+ + P P+ I I+ SMLP +
Sbjct: 99 GSVAAGKWCEAVDTFLP-GDAEEWIEAPGPVGPNAFILKIE---------GLSMLPKFSD 148
Query: 154 GDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
G+ ++++ +++ G ++ K ++ ++ K L L +LN +P +++++
Sbjct: 149 GEKVVIDPSLEALPGHYVVAKKTKSQEVTFKQLRREGTEYF-LYALNPDWPDRIIKLTE- 206
Query: 213 EW 214
EW
Sbjct: 207 EW 208
>gi|163867684|ref|YP_001608885.1| hypothetical protein Btr_0435 [Bartonella tribocorum CIP 105476]
gi|161017332|emb|CAK00890.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 200
Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 36/217 (16%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
K I + + L+ LA + L+ T S RW +ES
Sbjct: 3 KNIIATLQVLQSEFGLSQKDLADR--LNVTQATVS---------RWLGSES-----DPRG 46
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+L+L S + +PL+ + +G + P + T+ +P
Sbjct: 47 SHRDAILELYKSLKGYNQITT-LVPLMGYVGAGLEIDTNVEQIPE-DGLETIEIP----- 99
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNC--GDRLLIKPRTGDIVA 182
+ + + + SM P+Y+ GD++++ V+ GD +++
Sbjct: 100 ----FDLPFEAIGFMVRGDSMYPVYKDGDLIVVKHLQTKPVSGYYGDEVVVLTEDNRRFI 155
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
K + I L S N ++ + I+W+ I+
Sbjct: 156 KQITR-SLEGIVLKSWNADP----IKNAKIKWVGEIV 187
>gi|41179362|ref|NP_958701.1| repressor protein cI [Bordetella phage BPP-1]
gi|45569525|ref|NP_996594.1| repressor protein cI [Bordetella phage BMP-1]
gi|45580776|ref|NP_996642.1| repressor protein cI [Bordetella phage BIP-1]
gi|14278854|gb|AAK40284.1| repressor protein cI [Bordetella phage BPP-1]
Length = 223
Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 39/226 (17%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MT+ + I+ + + +A K G+ + ++ ++ G N+ PS E++ K
Sbjct: 1 MTTLAQN-----INYLFRVRGENATSIAEKVGISQPTLHRIQK----GINQRPSGETLRK 51
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE-----------IPLLYFPPSGS----GGFF- 104
+ T+ LL S G E + +PLL +G G F
Sbjct: 52 LADYFGVTVDDLLTRDLSTGLPAEAIARANVREGPNIRGLVPLLTSVQAGEWCEIAGTFQ 111
Query: 105 -DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
D V +P + + + K P Y GD++ ++ +
Sbjct: 112 RDDA---------KVWLPCPVKHGPRTFCLTVEGESMKNPG--ARPSYEPGDVIFVDPDV 160
Query: 164 QVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GDR++ + + K + GR + L +LN + +
Sbjct: 161 AAKPGDRVVARLESQVAATFKQYLEEDGRKL-LKALNPDWQPRYIP 205
>gi|195970156|ref|NP_386132.2| putative phage repressor protein [Sinorhizobium meliloti 1021]
gi|307311314|ref|ZP_07590957.1| putative phage repressor [Sinorhizobium meliloti BL225C]
gi|307318847|ref|ZP_07598279.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|187904193|emb|CAC46605.2| Phage-related repressor protein C [Sinorhizobium meliloti 1021]
gi|306895568|gb|EFN26322.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|306899615|gb|EFN30243.1| putative phage repressor [Sinorhizobium meliloti BL225C]
Length = 229
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 17/161 (10%)
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
+A T+ ++ G + ++IP+ G G F GN V P
Sbjct: 75 SALGSTMTEIDVPNARIGAKVIGQGEKIPVFGQAVGGVDGEF----IMNGNVLYEVMAPP 130
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL--IKPRTGDI 180
I S +G YA+ SM P Y G++ ++ + +V GD ++ I+ G
Sbjct: 131 ILSDISGAYAV-------SVSGDSMYPRYEDGEVCFVDPSRRVRKGDYVIAQIRLEEGGA 183
Query: 181 V---AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ K + + L N + E + + + I
Sbjct: 184 LLAYVKKFVRHNSSELVLEQFNP-HKELRFEANTVHSVHYI 223
>gi|315650040|ref|ZP_07903120.1| LexA repressor [Eubacterium saburreum DSM 3986]
gi|315487810|gb|EFU78113.1| LexA repressor [Eubacterium saburreum DSM 3986]
Length = 213
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 18/161 (11%)
Query: 56 ESIFKILAATNETICQLLD---LPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
E I KIL T + LP + + + +IP+L + P
Sbjct: 49 EPIAKILETTPAKLMGWNSNDNLPNGNPEPHEKPRGVKIPVLGDVAA---------GIPI 99
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ + EI A + + + + SM P + GD++I+ + GD +
Sbjct: 100 EAIEDIIDYEEIDED----LARRGEFFGLRIKGNSMSPRIQNGDVVIVRVQPDADSGDIV 155
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K D K L I L+SLN Y DI
Sbjct: 156 ITKVNGYDACCKRLQKHD-DGISLISLNPDYEPMFFSKKDI 195
>gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC
23330]
Length = 206
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 43/212 (20%)
Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---ATNETICQLLDLPF 77
L+ + L + AG+ ++ GRN+ S KIL A T+ L+D
Sbjct: 15 GLSQAALGKLAGVPQSTIG----QIENGRNK-----SSTKILELAHALQTTVEYLVDGVE 65
Query: 78 SDGRTT--------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ +P++ + +GS W V + +
Sbjct: 66 PAQKQPSLPNVSEMPTPLYSVPVISWVQAGS--------------WQPVELFDDDDLEYI 111
Query: 130 I--YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + + + SM P + +GDI++++ + G +I + K L+
Sbjct: 112 VCRTKLGKDGYALRVRGDSMQPEFTEGDIIVIDPHGEPRAGS-FVIALHDNETTFKQLVF 170
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
R + L LN YP ++ +D RIL
Sbjct: 171 DGSRPM-LRPLNSNYPYLQIKEND-----RIL 196
>gi|92118814|ref|YP_578543.1| putative phage repressor [Nitrobacter hamburgensis X14]
gi|91801708|gb|ABE64083.1| putative phage repressor [Nitrobacter hamburgensis X14]
Length = 240
Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 24/233 (10%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKILAAT 65
K I I+ E P+ +R AGL P + +R E + + S +++ +
Sbjct: 5 KTIVARIEARLEEMGTNPAAASRAAGLSPGAIRNLQRGAKGEIKLKGASGKTLSALAEYL 64
Query: 66 NETICQLLDLPFSDGRT------TEKKEKEIPLLYFPPSGSGGFFDSG--VFPTGNKWNT 117
+ L+ G+ ++ + P G FD G +
Sbjct: 65 QVPLDWLMSGSGEPGKPQVIRPAGPERSTVVDAPNAPRLSEFGDFDVEVRGISVGGGDDE 124
Query: 118 VGVPE-----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
+R P + A SM+P Y G+ + + A V GD ++
Sbjct: 125 FYFNGDVIDHLRRPPGILRA--KNVFALNVAGDSMMPRYEPGEPIYVQRANPV-IGDYVV 181
Query: 173 IKP------RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
++ + G K L+ R GR + LN + +++ I R+L
Sbjct: 182 VELYPEIEGQAGKSFLKKLVRRTGRRVTCSQLNPPKE-LEFDTGEVKEIYRVL 233
>gi|171914342|ref|ZP_02929812.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136]
Length = 286
Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
KI+ T T + + + IP L F +G + G
Sbjct: 129 KIIDETGRT--GTMGAIPNLQVPPGTTARIIPHLSFAQAGKMEACWEDG-----GYEYEG 181
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-- 177
+ + ++ + SM GD +++ + + G +L +
Sbjct: 182 RVALNVKDPKAFTVE-------IRGDSMEDKISPGDTIMVYPSKEPRNGSVVLARLTDDA 234
Query: 178 -GDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
GD+ K+ ++ G+ + L S N YP D +I ++
Sbjct: 235 GGDVFCKLYTAKNQGKEVLLTSFNPAYPPMEYRREDFRFIYPVV 278
>gi|220935647|ref|YP_002514546.1| putative phage repressor [Thioalkalivibrio sp. HL-EbGR7]
gi|219996957|gb|ACL73559.1| putative phage repressor [Thioalkalivibrio sp. HL-EbGR7]
Length = 230
Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIKPRTGDIVAK 183
H ++A SM P R GD++++ ++ D + + G ++ K
Sbjct: 127 HQELHANPADLYLIYVDGESMEPTLRPGDVILVDRRSAQAVPR--DGIYVLRMDGSLLVK 184
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221
L GR + + S N Y + + D+ I R++W+
Sbjct: 185 RLQRLPGRKVKVTSDNPAYEPFELALDTPGEDLAIIGRVVWS 226
>gi|238762739|ref|ZP_04623708.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638]
gi|238699044|gb|EEP91792.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638]
Length = 240
Score = 62.3 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 27/218 (12%)
Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKILA 63
+ ++ + +H ++ S LA+ +G+ S+ ++R+ + R E + KI
Sbjct: 19 KYDDFAARLNSLMSKHEISVSSLAKLSGV---SYEMARRYTLGTAKPR---DEKMLKIAD 72
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
N + LD GR TE K + L S G+ + P +
Sbjct: 73 HLNVS-PAFLDYGTMTGRDTEADSKVVKLRQLEVFAS----------AGHGYINNEFPAV 121
Query: 124 RS----PHNGIYAIQTQDTR-----HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
S P + IY + + + SM+P D+L +++ I GD + +
Sbjct: 122 ISSIEIPEDKIYELFGRKSLDGIHLMNVDGDSMMPTLHPRDLLFIDTKIDHFNGDGVYVF 181
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
K L +GR + ++S N YP +E +++
Sbjct: 182 NFEDSTFVKRLQKVKGRRLSVLSDNDKYPPFFIEANEM 219
>gi|227822462|ref|YP_002826434.1| putative phage repressor [Sinorhizobium fredii NGR234]
gi|227341463|gb|ACP25681.1| putative phage repressor [Sinorhizobium fredii NGR234]
Length = 241
Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 17/146 (11%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
K+IP+ G G F G + V P I S + YA+
Sbjct: 102 GPPTKLVGPGKKIPVFGQAVGGVDGEF----LMNGTVLHEVLAPPILSDISDAYAV---- 153
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL--IKPRTGDIV---AKVLISRRGRS 192
SM P Y G++ ++ +V GD ++ I+ G + K +
Sbjct: 154 ---SVSGDSMYPRYEDGEVCFVDPGRRVRKGDYVIAQIRLEEGGALLAYVKKFVRHNSSE 210
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARI 218
+ L N + E + + I
Sbjct: 211 LVLEQFNPQKELR-FEARTVHSVHYI 235
>gi|254419963|ref|ZP_05033687.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
gi|196186140|gb|EDX81116.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
Length = 153
Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 62 LAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
L AT E I + + + +G D G + + V
Sbjct: 7 LQATELELIKDFFAGEQPPAGPAYD---TLDVYGYAQAGGD---DLVSLADGQVIDRIEV 60
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGD 179
P ++ + SM P G+ +I+ + DR +++ R G
Sbjct: 61 PAGL--------VRGATIGIRVVGDSMEPRLFSGETVIVGLNMPPQR-DRDCVVEFRDGS 111
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ K +R ++ L N V VE S ++ I +L+
Sbjct: 112 AIVKQYKGQRDGTVFLHQYNPDKEVR-VEASKVKAIHAVLY 151
>gi|150397057|ref|YP_001327524.1| putative phage repressor [Sinorhizobium medicae WSM419]
gi|150028572|gb|ABR60689.1| putative phage repressor [Sinorhizobium medicae WSM419]
Length = 241
Score = 61.5 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
G + ++IP+ G G F GN V P I S +G YA+
Sbjct: 104 GAKVIGQGEKIPVFGQAVGGVDGEF----IMNGNVLYEVMAPPILSDVSGAYAV------ 153
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR---TGDIVA--KVLISRRGRSID 194
SM P Y G++ ++ + +V GD ++ + R +G ++A K + +
Sbjct: 154 -SVSGDSMYPRYEDGEVCFVDPSRRVRKGDYVIAQIRLEESGALLAYVKKFVRHNSSELV 212
Query: 195 LMSLNCCYPVDTVEMS--DIEWIA 216
L N + + + +IA
Sbjct: 213 LEQFNPPKELRFEAHTVHSVHYIA 236
>gi|254492240|ref|ZP_05105414.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|224462565|gb|EEF78840.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
Length = 209
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 28/171 (16%)
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-------DSGVFPTGNKW 115
+I + + + IPL S G+ D+ +F +W
Sbjct: 51 EEVGSSIKDY----SAGTGSIMETFAHIPLFDVKASAGNGYVIHEEEETDALIF--KKEW 104
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ + IY + SM P R GD+++++ V D + +
Sbjct: 105 IYNELHSSPANLYLIY----------VEGESMEPALRPGDVILVDHTDNVAKRDGIYVIR 154
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIARILWA 221
++ K L + + + S N Y + + ++ I R++W+
Sbjct: 155 MGESLLVKRLQRLPSQRLKVTSDNPAYEPFEISLDFDLQNELSIIGRVVWS 205
>gi|254490244|ref|ZP_05103434.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254490560|ref|ZP_05103746.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254490688|ref|ZP_05103873.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254490854|ref|ZP_05104037.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254490891|ref|ZP_05104074.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254490935|ref|ZP_05104117.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254491345|ref|ZP_05104525.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254491994|ref|ZP_05105172.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254492163|ref|ZP_05105338.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|254492671|ref|ZP_05105842.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
gi|224462192|gb|EEF78470.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224462715|gb|EEF78989.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224462809|gb|EEF79080.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224463474|gb|EEF79743.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224463844|gb|EEF80111.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224464026|gb|EEF80292.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224464063|gb|EEF80329.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224464144|gb|EEF80408.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224464304|gb|EEF80567.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
gi|224464591|gb|EEF80850.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
Length = 272
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 28/171 (16%)
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-------DSGVFPTGNKW 115
+I + + + IPL S G+ D+ +F +W
Sbjct: 114 EEVGSSIKDY----SAGTGSIMETFAHIPLFDVKASAGNGYVIHEEEETDALIF--KKEW 167
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ + IY + SM P R GD+++++ V D + +
Sbjct: 168 IYNELHSSPANLYLIY----------VEGESMEPALRPGDVILVDHTDNVAKRDGIYVIR 217
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIARILWA 221
++ K L + + + S N Y + + ++ I R++W+
Sbjct: 218 MGESLLVKRLQRLPSQRLKVTSDNPAYEPFEISLDFDLQNELSIIGRVVWS 268
>gi|222149508|ref|YP_002550465.1| bacteriophage repressor protein C1 [Agrobacterium vitis S4]
gi|221736490|gb|ACM37453.1| bacteriophage repressor protein C1 [Agrobacterium vitis S4]
Length = 191
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 21/145 (14%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G K K + L+ +G + D G V H A++
Sbjct: 60 GTPDSKPFKRVKLMGKVGAGQEIYAIDDGG--------QSDVDAPADAHQNTVAVE---- 107
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVLIS-RRGRSIDL 195
SM P Y +G IL + + + R +++ G I K + + L
Sbjct: 108 ---VSGESMYPAYEEGTILFYSKTLPPSEMVNRRAVVQLADGRIFVKTVRPGTTPNTWTL 164
Query: 196 MSLNCCYPVDTVEMSDIEWIARILW 220
S+N YP ++ +EW A I W
Sbjct: 165 TSINALYPDMIDQI--VEWAAPIDW 187
>gi|56475434|ref|YP_157023.1| putative bacteriophage-related transcriptional repressor
[Aromatoleum aromaticum EbN1]
gi|56311477|emb|CAI06122.1| putative bacteriophage-related transcriptional repressor
[Aromatoleum aromaticum EbN1]
Length = 229
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+ ++ ++PL+ + +G P G + V PH +A+
Sbjct: 93 SPNICAGPDRKGKVPLISWVRAGEFAHAADL-LPVGEAYEWVETGVNVQPHT--FAL--- 146
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ Q SM P + G I+++ + GD ++ + + K L+ + L
Sbjct: 147 ----RVQGDSMEPEFVAGTIIVIEPHMVAEPGDYVIARNGDNEATFKQLVRDGA-DLYLK 201
Query: 197 SLNCCYPVDTVEMSDIEWIAR 217
LN YP+ + + I + R
Sbjct: 202 PLNPRYPIKPLGATAIIGVVR 222
>gi|52842770|ref|YP_096569.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52629881|gb|AAU28622.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 225
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 71/196 (36%), Gaps = 12/196 (6%)
Query: 24 PSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFKILAATNETICQLLDLPF---S 78
GL R+A D T K R G R P E I ++ A + L+ L
Sbjct: 17 AKGLTRQALADLTDDIKPSRINNWEHG-TRMPGPEEITQLAQALEVSPSFLMGLSDERDG 75
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
D + IPLL +G + V +P + N +
Sbjct: 76 DFGINSRVGSLIPLLDHKQAGDPKYHIQRVKEEPYAEKITFLPVNQDIANQ---LDEYAF 132
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRGRSIDL 195
K D SM P R DI I++ +I N GD +++K D I IS +L
Sbjct: 133 ALKMLDDSMSPELRINDIQIVDPSISPNPGDFVVVKISGKDDVIICQYKKISYTSSEFEL 192
Query: 196 MSLNCCYPVDTVEMSD 211
++LN +P T S+
Sbjct: 193 LTLNDNWPNITFNESE 208
>gi|222149048|ref|YP_002550005.1| transcriptional regulator [Agrobacterium vitis S4]
gi|221736033|gb|ACM36996.1| transcriptional regulator [Agrobacterium vitis S4]
Length = 191
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 39/199 (19%)
Query: 27 LARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
LA G+ ++ N+ K EG +R + I +L ++ F G K
Sbjct: 23 LAAHFGVSQSTVNRWKSGSEPEGHHR---------------DAIRELYNMEF--GTPDSK 65
Query: 86 KEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
K + L+ +G + D G N V P H A++
Sbjct: 66 PFKRVKLMGKVGAGQEIYAIDDGGQ------NYVDAPA--DAHQNTVAVE-------VSG 110
Query: 145 TSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCC 201
SM P Y +G IL + + + R +++ G I K + + L S+N
Sbjct: 111 ESMYPAYEEGTILFYSKTLPPSEMVNRRAVVQLADGRIFVKTVRPGTTPNTWTLTSINAL 170
Query: 202 YPVDTVEMSDIEWIARILW 220
YP ++ +EW A I W
Sbjct: 171 YPDMIDQI--VEWAAPIDW 187
>gi|297622579|ref|YP_003704013.1| transcriptional repressor, LexA family [Truepera radiovictrix DSM
17093]
gi|297163759|gb|ADI13470.1| transcriptional repressor, LexA family [Truepera radiovictrix DSM
17093]
Length = 204
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 17/129 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
+ +P+L P G + PE P G Q +
Sbjct: 71 PARATGVPVLGS-------------IPAGPLSEALAEPEGFLPLTGA----RQQFALRVS 113
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM L + GDI++ + G+ ++ ++ K + +++ L N YP
Sbjct: 114 GDSMADLIQDGDIVLFRKGMPTRSGEICAVRVGNSEVTLKYVDHHEPQTVTLRPHNPQYP 173
Query: 204 VDTVEMSDI 212
V +++
Sbjct: 174 TVAVPATEV 182
>gi|184157332|ref|YP_001845671.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
ACICU]
gi|260555987|ref|ZP_05828207.1| cro/CI family transcriptional regulator [Acinetobacter baumannii
ATCC 19606]
gi|183208926|gb|ACC56324.1| putative transcriptional regulator, Cro/CI family [Acinetobacter
baumannii ACICU]
gi|260410898|gb|EEX04196.1| cro/CI family transcriptional regulator [Acinetobacter baumannii
ATCC 19606]
gi|322507218|gb|ADX02672.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
1656-2]
gi|323517194|gb|ADX91575.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
TCDC-AB0715]
Length = 250
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 11/149 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ + + +++ +P+ + G G+F + V G
Sbjct: 96 EDAVKFVQAPAKPFPIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHTAGPRAYG 155
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I K SM P R G ++ + + + + + + G K +
Sbjct: 156 I----------KGTGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGIN 205
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
G + L+S+N EM ++E I I
Sbjct: 206 GGVLSLLSVNGG-ERFFFEMDEVESITAI 233
>gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Faecalibacterium prausnitzii SL3/3]
Length = 210
Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 41/218 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
++ ++ + LA + G+ + K S + + PST + +I N T LL L
Sbjct: 12 KKQGVSQAELASRLGVTQQAVGKWESGKSSPD-----PST--VARIAELLNTTADYLLGL 64
Query: 76 PFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ +E+ IP++ +G G + E
Sbjct: 65 YRPVSNVSAPEERFFGSYTESLIPVIGTVKAGYG---------------ALAFEEDYGQE 109
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186
+ + SM P + GD+ +++ + GD +LI G+ L
Sbjct: 110 YARVKDPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGE---GTLK 166
Query: 187 S--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219
+RG + L N Y + D+ + R++
Sbjct: 167 RYIQRGNCVVLQPFNPAYHEMVIRGEDLNHLHIAGRVV 204
>gi|87198657|ref|YP_495914.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
gi|87134338|gb|ABD25080.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
Length = 208
Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 81/237 (34%), Gaps = 55/237 (23%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS----FNKSK---RFGIEGRNRWP 53
M+ F + + + H + LA+ AGL TS F+ S+ R G
Sbjct: 7 MSKFDIDAFRTRLQSLMDEHKIKRKPLAKAAGLGETSIRDIFDSSRNDVRIGT------- 59
Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
+ ++ ++ +L++ P L +G F++ +G
Sbjct: 60 ----LVRLADYFQMSVDELIEEPEMR------------LAGRVGAGGQVLFEAEDSHSGP 103
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN------SAIQVNC 167
VP+ + A++ TSMLP Y GDI+ + +
Sbjct: 104 T-----VPKPPGASAAVMALE-------VVGTSMLPKYEDGDIVYVRRDVDGIPRSAI-- 149
Query: 168 GDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
G+ ++ G K+L L SLN +E ++ W A +LW Q
Sbjct: 150 GEYCAVRTAEGGTYLKILAKGSEPGRFTLRSLNA----PDMENEEVVWAAPVLWVRQ 202
>gi|213157772|ref|YP_002320570.1| putative transcriptional regulator, Cro/CI family [Acinetobacter
baumannii AB0057]
gi|301347660|ref|ZP_07228401.1| putative transcriptional regulator, Cro/CI family protein
[Acinetobacter baumannii AB056]
gi|301596874|ref|ZP_07241882.1| putative transcriptional regulator, Cro/CI family protein
[Acinetobacter baumannii AB059]
gi|213056932|gb|ACJ41834.1| putative transcriptional regulator, Cro/CI family [Acinetobacter
baumannii AB0057]
Length = 260
Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 11/149 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ + + +++ +P+ + G G+F + V G
Sbjct: 106 EDAVKFVQTSDKPFPIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHSAGPRAYG 165
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I K SM P R G ++ + ++ + + + + G K +
Sbjct: 166 I----------KGTGDSMFPAIRNGWYVVCDPDAELVPNEFVQVCLKDGRCTIKEFVGIN 215
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
G + L+S+N EM ++E I I
Sbjct: 216 GGVLSLLSVNGG-ERFFFEMDEVESITAI 243
>gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii
M21/2]
gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii
M21/2]
Length = 210
Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 41/218 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
++ ++ + LA + G+ + K S + + PST + +I N T LL L
Sbjct: 12 KKQGVSQAELASRLGVTQQAVGKWESGKSSPD-----PST--VARIAELLNTTADYLLGL 64
Query: 76 PFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ +E+ IP++ +G G + E
Sbjct: 65 YRPVSNVSAPEERFFGSYTESLIPVIGTVKAGYG---------------ALAFEEDYGQE 109
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186
+ SM P + GD+ +++ + GD +LI G+ L
Sbjct: 110 YARVKDPANYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGE---GTLK 166
Query: 187 S--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219
+RG + L N Y + D+ + R++
Sbjct: 167 RYIQRGNCVVLQPFNPAYHEMVIRGEDLNHLHIAGRVV 204
>gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator
MP104C]
gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator
MP104C]
Length = 196
Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 36/207 (17%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILAATNETI 69
I R+ E L+ LARKAGL S ++ + GR PS +S+ K+ A
Sbjct: 8 IRRLREESGLSQRALARKAGL-------SSQYLSDIEVGRTS-PSLKSLEKLAGALQVAP 59
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
QLL + E+P+L P+G + + + + +P +
Sbjct: 60 GQLLQ----GQDRFSSQVVEVPVLGRVPAGGPVVSEEVIL------DYLPLP-RKLASED 108
Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILIL--NSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ ++ + SM L GD +++ + +++I G++ K
Sbjct: 109 TFCLE-------VRGESMQDLGIDSGDYVLVRLQPTAE---NGQVVIARVEGEVTCKR-Y 157
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE 213
R R + L N + +E +IE
Sbjct: 158 YRTDRVVSLEPANRRFRPLRLEAGEIE 184
>gi|148358304|ref|YP_001249511.1| phage repressor [Legionella pneumophila str. Corby]
gi|296105654|ref|YP_003617354.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99
Alcoy]
gi|148280077|gb|ABQ54165.1| phage repressor [Legionella pneumophila str. Corby]
gi|295647555|gb|ADG23402.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99
Alcoy]
Length = 219
Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 13/160 (8%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
R P E I + A + + L+ L + T+ IPLL + F +
Sbjct: 45 RAPGPEEIKLLAQALDVSPAFLMCLSDDQQVKRTKSYSHLIPLLDHHQACDAKSFIEAIS 104
Query: 110 PTGNK----WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
G+ W +V I+ + +A++ D SM+P R D+L++ ++
Sbjct: 105 DQGSAGDVVWISVSATLIQELSSEAFALKMP-------DESMMPELRLNDVLVVEPSVTP 157
Query: 166 NCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPV 204
GD +++K + + +L++LN +P
Sbjct: 158 CPGDFVVVKLANKLEAIVCQYRETTYTEFELVTLNDNWPN 197
>gi|169633042|ref|YP_001706778.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii SDF]
gi|169151834|emb|CAP00666.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii]
Length = 254
Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
++ +P+ + G G+F + V S YA++
Sbjct: 114 PSSKRWVPVKAYSKMGMDGYFTDIGYEGNAGDGYVPTHTAGSR---AYAVKGT------- 163
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P R G ++ + + + + + + G K + G + L+S+N
Sbjct: 164 GDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-E 222
Query: 204 VDTVEMSDIEWIARI 218
EM ++E I I
Sbjct: 223 RFFFEMDEVESITAI 237
>gi|311107226|ref|YP_003980079.1| repressor protein C2 domain-containing protein [Achromobacter
xylosoxidans A8]
gi|310761915|gb|ADP17364.1| repressor protein C2 domain protein [Achromobacter xylosoxidans A8]
Length = 234
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
+ +PL+ + +G + + ++R +A++
Sbjct: 95 PAPIGSRRVPLINYVQAGE---LTEIGVSFSGEAMEYLLTDLRLSDYS-FALE------- 143
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDLM 196
Q SM P +R GD +I++ + GD ++ + + K R +L+
Sbjct: 144 IQGDSMSPEFRPGDRIIVDREVCPRPGDFVVARNGGYEATFKKYRPRGISETGHEVFELV 203
Query: 197 SLNCCYP 203
LN YP
Sbjct: 204 PLNEDYP 210
>gi|157834973|ref|YP_001469130.1| c repressor [Phage MP22]
gi|117373087|gb|ABH09825.1| c repressor [Pseudomonas phage MP22]
Length = 209
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 20/206 (9%)
Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL-----PF 77
+ S LAR AG+ +R+ G S+ K A ++ L+ P
Sbjct: 10 SASALARNAGISQGGL---QRYLKGGEPTRRVLISLAK---AAGVSLGWLMTGEGSKKPE 63
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
T + +PL S G + G + + G+ T+
Sbjct: 64 EQEATGSDQYVYVPLYDARVSAGHGSWSEG----AHVLTQLAFTRYSLSKKGL--EPTRM 117
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ + SM PL GD ++++ ++ + + + + AK L + SI ++S
Sbjct: 118 SAVRVGGDSMEPLLSDGDAVVIDHDLRTVRDEAIYVIRVGDQLYAKRLQRQFDGSIAIIS 177
Query: 198 LNCCYPVDTVE---MSDIEWIARILW 220
N Y V +SD++ I R++W
Sbjct: 178 ENKAYKDMVVPKDQLSDLDIIGRVVW 203
>gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 210
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 41/218 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
++ ++ + LA K G+ + K S + + PST + +I N T LL L
Sbjct: 12 KKQGISQAELASKLGVTQQAVGKWESGKSSPD-----PST--VARIAELLNTTADYLLGL 64
Query: 76 PFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ +E+ IP++ +G G + E
Sbjct: 65 YRPVSNVSAPEERFFGSYSESLIPVIGTVKAGYG---------------ALAFEEDYGQE 109
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186
+ + SM P + GD+ +++ + GD +LI G+ L
Sbjct: 110 YARVKDPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGE---GTLK 166
Query: 187 S--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219
+RG + L N Y ++ D+ + R++
Sbjct: 167 RYIQRGNCVVLQPFNPAYSEMVIKGEDLNHLHIAGRVV 204
>gi|156523050|ref|YP_950425.2| putative c repressor [Pseudomonas phage DMS3]
gi|156513709|gb|ABG66655.2| putative c repressor [Pseudomonas phage DMS3]
Length = 236
Score = 58.8 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 20/206 (9%)
Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-----DLPF 77
+ S LAR AG+ +R+ G S+ K A ++ L+ P
Sbjct: 37 SASALARNAGISQGGL---QRYLKGGEPTRRVLISLAK---AAGVSLGWLMTGEGSQKPE 90
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
T + +PL S G + G + + G+ T+
Sbjct: 91 EQEATGSDQYVYVPLYDARVSAGHGSWSEG----AHVLTQLAFTRYSLSKKGL--EPTRM 144
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ + SM PL GD ++++ ++ + + + + AK L + SI ++S
Sbjct: 145 SAVRVGGDSMEPLLSDGDAVVIDHDLRTVRDEAIYVIRVGDQLYAKRLQRQFDGSIAIIS 204
Query: 198 LNCCYPVDTVE---MSDIEWIARILW 220
N Y V +SD++ I R++W
Sbjct: 205 ENKAYKDMVVPKDQLSDLDIIGRVVW 230
>gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
Length = 255
Score = 58.8 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
T + +P+ GG + P + + +P + G++A+
Sbjct: 116 TGLSVRSVPVFGTAQ---GGALGATGLPDSAQALDWARLPGPLTGIPGLFAL-------Y 165
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IVAKVLISRRGRSIDLM 196
+ SM P G ++ ++ D +++ + G+ + K L+ R + L
Sbjct: 166 VEGDSMEPWVEHGHLIYIHPTRPAAPRDHVVVVVQDGEYDEPRALVKRLVRRTAGRLVLH 225
Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
N + ++ + I R++
Sbjct: 226 QYNPAGEI-EIDARTVMRIYRVI 247
>gi|255282221|ref|ZP_05346776.1| LexA repressor [Bryantella formatexigens DSM 14469]
gi|255267169|gb|EET60374.1| LexA repressor [Bryantella formatexigens DSM 14469]
Length = 206
Score = 58.8 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
+ P + + EI A + + SM P + +GD++I+
Sbjct: 87 AAGIPIEAITDIIDTEEIPEE----MAATGEFFGLQIHGDSMEPKFSEGDVVIVRQQDDA 142
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
GD ++ D K L + I+L+S N Y DIE
Sbjct: 143 ESGDIVIAMINGDDATCKRL-RKYRDGIELVSTNPSYEPMFFSNEDIE 189
>gi|239504169|ref|ZP_04663479.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii AB900]
Length = 254
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 11/149 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ + ++ +++ +P+ + G G+F + V G
Sbjct: 100 EDAVKFLETPVKSFPTQKRYVPVKAYSKMGMDGYFTDMGYEGNAGDGYVPTHSAGPRAYG 159
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I K SM P R G ++ + + + + + + G K +
Sbjct: 160 I----------KGTGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGIN 209
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
G + L+S+N EM ++E I I
Sbjct: 210 GGVLSLLSVNGG-ERFFFEMDEVESITAI 237
>gi|226940427|ref|YP_002795501.1| prophage repressor protein [Laribacter hongkongensis HLHK9]
gi|226715354|gb|ACO74492.1| Putative prophage repressor protein [Laribacter hongkongensis
HLHK9]
Length = 233
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
E+P++ + +G+ P G TV H YA+
Sbjct: 100 APGPFVGGEVPIISWVQAGNFESVVDNFQP-GFAEETVTATVQVRRHT--YAL------- 149
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM P +++GDILI+ ++ G ++ K + K L+ G L LN
Sbjct: 150 RVHGDSMEPDFKEGDILIVEPEMEAVHGSYVIAKNGDNEATFKKLVQDGGDWY-LKPLNP 208
Query: 201 CYPVDTVE 208
YP+ +++
Sbjct: 209 AYPMKSLD 216
>gi|254240372|ref|ZP_04933694.1| hypothetical protein PA2G_01019 [Pseudomonas aeruginosa 2192]
gi|126193750|gb|EAZ57813.1| hypothetical protein PA2G_01019 [Pseudomonas aeruginosa 2192]
Length = 243
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 81/249 (32%), Gaps = 43/249 (17%)
Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
I + + H ++P+ L+R+ G+ ++ ++ + G+ P E ++ I
Sbjct: 1 MQKSTIQHILAALLAEHGISPTELSRRTGVGQSTISR----ILNGKIATPKDEQVYPIAE 56
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------------FF 104
+ QL +E P + G F
Sbjct: 57 YFGLSTDQLRGRVSIGTAPIPAVVRE------PEATMDGPIEVWDDSTPLPSDEVLVPFL 110
Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILI 158
G+ +V + RS G Y+++ Q SM P+ R G +
Sbjct: 111 KEVELAAGSGKMSVEMNSRRSLRFGKYSLKKQGVDPANARCVTITGNSMEPVLRNGATVG 170
Query: 159 LN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPV-----DTVEMSD 211
++ ++ GD L G + K G I L S N +P D + +
Sbjct: 171 VDVGNTRIVDGD-LYAINHGGLLRVKQTYRLPGGGIRLRSFNRDEHPDEEYSKDEIVAQE 229
Query: 212 IEWIARILW 220
IE I R+ W
Sbjct: 230 IEIIGRVFW 238
>gi|240850547|ref|YP_002971947.1| putative phage repressor [Bartonella grahamii as4aup]
gi|240267670|gb|ACS51258.1| putative phage repressor [Bartonella grahamii as4aup]
Length = 205
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 45/187 (24%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKE-------------IPLLYFPPSGSGG 102
E + K L T ++ + L G + + +PL+ + +G+
Sbjct: 23 EDVAKRLNVTQASVSKWLKDSDPRGSNRDAILELYKELKGDNHFTTFVPLMGYIGAGTQ- 81
Query: 103 FFDSG--VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
D P + V +P +A+ + + SM+P Y+ GD++I+
Sbjct: 82 -IDPSFEQIPE-DGLEQVEIP---------FALPDDMVAFEVKGDSMIPAYKDGDMVIVR 130
Query: 161 SAIQVNC---------GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +I K + IDL+S N ++
Sbjct: 131 -----RRQIKTIESFFGKEAVILTHDNKRYIKQISRGMNGEIDLLSWNALP----IKNVK 181
Query: 212 IEWIARI 218
I W+ I
Sbjct: 182 IVWVGEI 188
>gi|225155121|ref|ZP_03723616.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidase)-like protein [Opitutaceae bacterium TAV2]
gi|224804068|gb|EEG22296.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidase)-like protein [Opitutaceae bacterium TAV2]
Length = 215
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 16/163 (9%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
E++ + L TN + P+ G +EIP++ + +G ++
Sbjct: 54 ETLKRELEFTNRGELRENPAPYGVGHPLRDLAPREIPVISWAHAGEAVSYEE----IPRD 109
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W +PH ++ SMLP +R GD++++ ++ ++ K
Sbjct: 110 WQNTIYTSCATPHAFAITVE---------GDSMLPDFRPGDVVVVMPEVEPRNHCPVVAK 160
Query: 175 PRTGDIVAKVLISRRG--RSIDLMSLNCCYPVDTVEMSDIEWI 215
+ +V K+L + R+I L S+N Y T D WI
Sbjct: 161 LKNDGVVLKILNASGPEKRTIVLTSINPVYQPLTYTPEDFHWI 203
>gi|330830140|ref|YP_004393092.1| phage repressor [Aeromonas veronii B565]
gi|328805276|gb|AEB50475.1| Phage repressor [Aeromonas veronii B565]
Length = 144
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 29/148 (19%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-----GVPEIRSPHNGIYAIQTQDTRH 140
K IP+L + +G+ W + + I
Sbjct: 3 PGKRIPILSYVQAGN--------------WREMCEQATTFDGNVEFVSASGEIGPFGFGL 48
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGRSIDL 195
+ SMLP +++GD++I++ GD ++ K + + K R +L
Sbjct: 49 WLRGDSMLPQFKEGDLIIVDPDEAPQPGDYVVAKNGSNEATFKKYRPRGIDENGQEVFEL 108
Query: 196 MSLNCCYPVDTVEMSDIEWI-----ARI 218
+ LN YP + I+ I RI
Sbjct: 109 VPLNEDYPTMHSDRQHIQIIGVMVEHRI 136
>gi|322507694|gb|ADX03148.1| Putative repressor protein from bacteriophage [Acinetobacter
baumannii 1656-2]
Length = 243
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
T ++ +P+ + G G+F + V GI K
Sbjct: 102 TPSSKRWVPVKAYSKMGMDGYFTDMGYEGNAGDGYVPTHSAGPRAYGI----------KG 151
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P R G ++ + + + + + + G K + G + L+S+N
Sbjct: 152 TGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG- 210
Query: 203 PVDTVEMSDIEWIARI 218
EM ++E I I
Sbjct: 211 ERFFFEMDEVESITAI 226
>gi|169796760|ref|YP_001714553.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii AYE]
gi|169149687|emb|CAM87578.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii AYE]
Length = 249
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 11/149 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ + + +++ +P+ + G G+F + V G
Sbjct: 95 EDAVKFVQTSDKPFPIQKRYVPVKAYSKMGMDGYFTDMGYEGNAGDGYVPTHTAGPRAYG 154
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I K SM P R G ++ + + + + + + G K +
Sbjct: 155 I----------KGTGDSMFPAIRNGWYVVCDPDADLVPTEFVQVCLKDGRCTIKEFVGIN 204
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
G + L+++N + +M ++E I I
Sbjct: 205 GGVLSLLAVNGG-ERLSFDMDEVESITAI 232
>gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 207
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 19/144 (13%)
Query: 83 TEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
E + IP+L + +G D + + +A+ +
Sbjct: 70 AEVSTRHIPILSYVQAGQCTEARDYTNM---EGEFEYVLAD-ADVPETCFAL-------R 118
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR--RGRSIDLMSLN 199
SM P +++GDI+I++ + G+ ++ K + K +L+ LN
Sbjct: 119 IDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNNGHEATFKKYRPLGIGIEDFELVPLN 178
Query: 200 CCYPVDT---VEMSDIEWI--ARI 218
YPV + + I + RI
Sbjct: 179 PDYPVLRSAELPLRVIGVMIEHRI 202
>gi|331019765|gb|EGH99821.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 238
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM +R GD L+++ I D + + GD+ K L G S+ ++S N Y
Sbjct: 151 DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGSLRMISDNPLY 210
Query: 203 PVDTVEMSDIEWI---ARI--LW 220
P +E +D+ + AR+ +W
Sbjct: 211 PAIIIEGADLTKVHIQARVLLVW 233
>gi|195546597|ref|YP_002117625.1| C repressor protein [Rhizobium phage 16-3]
gi|218512144|sp|P15238|RPC_BP163 RecName: Full=Repressor protein C
gi|102642540|gb|ABF71321.1| C repressor protein [Rhizobium phage 16-3]
Length = 263
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 20/147 (13%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+K+K +P+L G G +F G+ + V P YA+
Sbjct: 125 EPRKKKLLPVLGEAVGGEDG---EYIF-NGSVLDYVDCPPSLENVPNAYAV-------YI 173
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-----TGDI---VAKVLISRRGRSID 194
SM+P +R G+ + ++ GD ++I+ G K + +
Sbjct: 174 DGESMVPRFRPGETVWVHPTKPPRRGDDVVIQIHPDNEDDGAPPRGFVKEFVGWTANKLV 233
Query: 195 LMSLNCCYPVDTVEMSDIEWIARILWA 221
L N + + + I+ A
Sbjct: 234 LQQYNPTKKI-EFTREQVVSVHPIILA 259
>gi|213971961|ref|ZP_03400059.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
tomato T1]
gi|213923276|gb|EEB56873.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
tomato T1]
Length = 148
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM +R GD L+++ I D + + GD+ K L G ++ ++S N Y
Sbjct: 61 DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGALRMISDNPLY 120
Query: 203 PVDTVEMSDIEWI---ARI--LW 220
P +E +D+ + AR+ +W
Sbjct: 121 PAIIIEGADLTKVHIQARVLLVW 143
>gi|319776198|ref|YP_004138686.1| putative phage repressor [Haemophilus influenzae F3047]
gi|301168972|emb|CBW28569.1| unnamed protein product [Haemophilus influenzae 10810]
gi|317450789|emb|CBY87011.1| Putative phage repressor [Haemophilus influenzae F3047]
Length = 219
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 31/173 (17%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEI-----PLLYFPPSGSGGFFDSGVFPTG 112
+ +L C LL L +G ++ I PL+ + +G+ D TG
Sbjct: 54 LSTVLE------CDLLWLLRGEGSSSNVMPASIGTNKVPLISYVQAGTWTGIDDLKESTG 107
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
+ + +A++ + SM P ++ GD++I++ I+ G+ +
Sbjct: 108 DFNYIYTFIDTSDD---AFALE-------IKGDSMEPDFKAGDVIIIDPRIEPRAGEFVA 157
Query: 173 IKPRTGDIVAK------VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + +L+ LN YP + +I RI+
Sbjct: 158 AINGDYEATFKKYRPIGDIDELGRHHFELVPLNSDYPTLSSLKQEI----RII 206
>gi|295096873|emb|CBK85963.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 192
Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 18/127 (14%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA---IQTQDTR 139
E + IP+L + + G V ++ + A +
Sbjct: 55 AEISTRRIPVLSYVQA-------------GELTEAKDVTDLTGDFEYVLADSDVPATCFA 101
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMS 197
+ SM P +++GDI+I++ + G+ ++ K + K +L+
Sbjct: 102 LRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNGGHEATFKKYRPLGVGINDFELVP 161
Query: 198 LNCCYPV 204
LN YPV
Sbjct: 162 LNPDYPV 168
>gi|161345277|gb|ABX64473.1| putative phage repressor [Pseudomonas syringae]
Length = 238
Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM +R GD L+++ I D + + GD+ K L G ++ ++S N Y
Sbjct: 151 DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGALRMISDNPLY 210
Query: 203 PVDTVEMSDIEWI---ARI--LW 220
P +E +D+ + AR+ +W
Sbjct: 211 PAIIIEGADLTKVHIQARVLLVW 233
>gi|301386007|ref|ZP_07234425.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13]
gi|302058863|ref|ZP_07250404.1| putative phage repressor [Pseudomonas syringae pv. tomato K40]
Length = 238
Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM +R GD L+++ I D + + GD+ K L G ++ ++S N Y
Sbjct: 151 DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGALRMISDNPLY 210
Query: 203 PVDTVEMSDIEWI---ARI--LW 220
P +E +D+ + AR+ +W
Sbjct: 211 PAIIIEGADLTKVHIQARVLLVW 233
>gi|167565035|ref|ZP_02357951.1| putative transcriptional regulator [Burkholderia oklahomensis
EO147]
Length = 230
Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 26/187 (13%)
Query: 53 PSTESIFKILAATNETICQLLDLPF-----------SDGRTTEKKEKEIPLLYFPPSGSG 101
P E + I AT +I LL ++ + +P S
Sbjct: 46 PKAEGLLAISEATGRSIDWLLGRVELANGSLVTADQAEANAASSEFVYVPRYDVKASAGT 105
Query: 102 GFF--DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
GF+ D T+ H ++A + + SM P+ +GD +++
Sbjct: 106 GFWLGDEA-----KAKFTMAFRRHWVEHY-LHANPKDLSVLRVHGDSMYPVLHEGDNILI 159
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE------ 213
N Q + D + + G ++ K L ++ ++S N YP V +S E
Sbjct: 160 NH-AQTSPQDGIYVLRLDGQMLVKRLQWVGAATVRVISANPDYPPYEVALSSPEDQREFC 218
Query: 214 WIARILW 220
+ R++W
Sbjct: 219 IVGRVVW 225
>gi|149186070|ref|ZP_01864384.1| putative transcriptional regulator, repressor [Erythrobacter sp.
SD-21]
gi|148830101|gb|EDL48538.1| putative transcriptional regulator, repressor [Erythrobacter sp.
SD-21]
Length = 212
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 32/195 (16%)
Query: 39 NKS--KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-------- 88
N S ++F +G R K+ A + + + + +
Sbjct: 32 NPSYLQQFVRKGSPR--------KLEEADRRRLAEFFGVDEVELGADPARPTPRESEDFV 83
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR---HKTQDT 145
+P L S G F + + R + + + +
Sbjct: 84 AVPRLALDASAGPGSFSA---------EEISFDSFRFSRRWLREMGLDGADLSAIRVEGD 134
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P R GD + ++ G+ + + + K + + I L+S N Y
Sbjct: 135 SMEPTLRSGDEIFVDRNK--RVGEGVHVVRIGDTLHVKQVQASAPGRIALISANEAYAPI 192
Query: 206 TVEMSDIEWIARILW 220
+ ++E I R++W
Sbjct: 193 ELARDEVEIIGRVVW 207
>gi|218665577|ref|YP_002425471.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218517790|gb|ACK78376.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 43/238 (18%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAA 64
H++I AI ++ T + LA K G+ S S+ R PS E++F++
Sbjct: 4 HERIKFAI----KQSGFTQNALAEKLGISRGSI--SQWVSGNIATRTVPSRENLFRLAEL 57
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
+ I L S +K E + + + D G V +P +
Sbjct: 58 SGVPIEWLWSGRESAAHKPQKPEGSLSV--------SEYQDEEGLGDG----EVEIPALN 105
Query: 125 ---------------SPHNGIYA---IQTQD------TRHKTQDTSMLPLYRKGDILILN 160
YA +Q R + SM P + G + ++
Sbjct: 106 LQVGAGSRIVCETIQEERKFRYARSWLQKYGLDSKYLFRVRVYGDSMEPYIKNGAWITVD 165
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ ++ + +I K L R I + S N YP V +D+E IA I
Sbjct: 166 KSRTNIQNGKIYVLRSGEEIQVKALFKRPDSGIIIRSNNPAYPDVQVSATDMEHIAII 223
>gi|330963891|gb|EGH64151.1| putative phage repressor [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 238
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM +R GD L+++ I D + + GD+ K L G ++ ++S N Y
Sbjct: 151 DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGALRMISDNPLY 210
Query: 203 PVDTVEMSDIEWI---ARI--LW 220
P +E +D+ + AR+ +W
Sbjct: 211 PAIIIEGADLTKVHIQARVLLVW 233
>gi|307245346|ref|ZP_07527434.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254300|ref|ZP_07536139.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258759|ref|ZP_07540491.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853687|gb|EFM85904.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862728|gb|EFM94683.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867110|gb|EFM98966.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 224
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 33/192 (17%)
Query: 43 RFGIEGRNRW------PSTES---IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
+ + ++W PST + + K LA T + L + ++PL+
Sbjct: 38 KVTPKAVSKWLNAETMPSTANIYLLAKFLAVT----PEWLTYGIGNVIPAAIGTTKVPLI 93
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
+ +G+ D G + + +A+ K + SM P +
Sbjct: 94 SYVQAGAWTGIDDFRETCG---DYEYILTDLDVSGDAFAL-------KIEGDSMEPEFIA 143
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAK------VLISRRGRSIDLMSLNCCYPVDTV 207
GDI+I++ ++ + G+ + + K L + +L+ LN + +
Sbjct: 144 GDIVIIDPKVEPHAGEFVAAINGDYEATFKKYRPLEDLDEYGRQHFELVPLNPDWHSMSS 203
Query: 208 EMSDIEWIARIL 219
+I RI+
Sbjct: 204 LKQEI----RII 211
>gi|38229113|ref|NP_938208.1| c repressor [Pseudomonas phage D3112]
gi|579180|emb|CAA36500.1| putative repressor [Pseudomonas phage D3112]
gi|37595164|gb|AAQ94439.1| c repressor [Pseudomonas phage D3112]
Length = 240
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 17/177 (9%)
Query: 56 ESIFKILAATNETIC------QLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGV 108
E + I A ++ ++ P ++ E + IPL +G G + D
Sbjct: 67 ELLSAIAKAGRVSLDWLINGEEVAAKPVEGAKSIEGEYVYIPLYDGQVSAGHGSWTDGAT 126
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
+ + + + I AI + SM PL GD ++++
Sbjct: 127 VLVNLAFTRYSLRKKGLDPSSISAI-------RIGGDSMEPLLCDGDTVLVDHTKSTVQD 179
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWAS 222
+ + + AK L R S+ ++S N Y V +SD+E I R++WAS
Sbjct: 180 AAVYVVRLDDHLYAKRLQRRFDGSVSIISENKAYTEMIVPKAKLSDLEIIGRVVWAS 236
>gi|223935627|ref|ZP_03627543.1| transcriptional regulator, XRE family [bacterium Ellin514]
gi|223895635|gb|EEF62080.1| transcriptional regulator, XRE family [bacterium Ellin514]
Length = 222
Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G + + + + SM P GD++ + + G+
Sbjct: 104 AGTAHDYADLANQIEEVVYTDSRDPNAFALIVEGDSMYPEIAAGDVITFSPNSEPRNGNI 163
Query: 171 LLIKPRT-GDIVAKVLISRRG--RSIDLMSLNCCYPVDTVEMSDIEWI 215
++ + ++ K R+I L S N YP T+ +I
Sbjct: 164 VVARLAENHGVLVKRFRRTGPEGRTIILESTNQDYPPITLPAEAFRFI 211
>gi|215479977|ref|YP_002332426.1| c repressor [Pseudomonas phage MP29]
gi|169409241|gb|ACA57646.1| c repressor [Pseudomonas phage MP29]
Length = 240
Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 17/177 (9%)
Query: 56 ESIFKILAATNETIC------QLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGV 108
E + I A ++ ++ P ++ E + IPL +G G + D
Sbjct: 67 ELLSAIAKAGRVSLDWLINGEEVAATPAEGAKSIEGEYVYIPLYDGQVSAGHGSWTDGAT 126
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
+ + + + I AI + SM PL GD ++++
Sbjct: 127 VLVNLAFTRYSLRKKGLDPSSISAI-------RIGGDSMEPLLCDGDTVLVDHTKSTVQD 179
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWAS 222
+ + + AK L R S+ ++S N Y V +SD+E I R++WAS
Sbjct: 180 AAVYVVRLDDHLYAKRLQRRFDGSVSIISENKAYTEMIVPKAKLSDLEIIGRVVWAS 236
>gi|99080630|ref|YP_612784.1| putative phage repressor [Ruegeria sp. TM1040]
gi|99036910|gb|ABF63522.1| HTH-type transcriptional regulator prtR [Ruegeria sp. TM1040]
Length = 238
Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 37/218 (16%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
EA+DR + L+ LA KAG+ S+ + K+ +G+++ + E KI A +
Sbjct: 36 EALDRAQDATGLSMRKLADKAGV---SYEQLKKV-RQGKSQTTNAEDALKIATAVGVSFE 91
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
Q + F T I + +G+ FD+ G V P PH G
Sbjct: 92 QFMSGEFDASPT-------ISIAGKVGAGAQVPVFDAYEKGDGP---QVECPPGIGPH-G 140
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-----LIKPRTGDIVAKV 184
+ A++ + SM P+Y GD+L + + D + + + G K
Sbjct: 141 VVAVE-------VEGDSMEPVYSAGDLLFYSRNGHDSVPDDVIGYKCVCEDADGMGWVKQ 193
Query: 185 LIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
+ + L+SLN W R+ WA
Sbjct: 194 VKAGDEPGLFHLISLNPTGAN--------MWNVRLKWA 223
>gi|169633405|ref|YP_001707141.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii SDF]
gi|169152197|emb|CAP01101.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii]
Length = 254
Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ + + + +++ +P+ + G G+F + V G
Sbjct: 100 EEAVKFVQTPTKPFPIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHTAGPRAYG 159
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I K SM P R G ++ + ++ + + + + G K I
Sbjct: 160 I----------KGTGDSMFPAIRNGWYVVCDPDAELVPTEFVQVCLKDGRCTIKEFIGIH 209
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ L+++N EM ++E IA I
Sbjct: 210 NGVLSLIAVNGG-ERFFFEMDEVESIAAI 237
>gi|254498006|ref|ZP_05110769.1| phage repressor [Legionella drancourtii LLAP12]
gi|254352783|gb|EET11555.1| phage repressor [Legionella drancourtii LLAP12]
Length = 227
Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 20/202 (9%)
Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTE---SIFKILAATNETICQLLD 74
+H T GL RKA + T K R R R P E + K+L + + L D
Sbjct: 12 KHERTIKGLTRKALAELTDSLKISRINNYERGERTPGPEEIKQLAKVLEVSPAFLMCLSD 71
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH----NGI 130
+ IPLL + + + +P S
Sbjct: 72 DKQGKLKKPLGLGALIPLLNYKQACDPAVCIQEIKNEQYSEIFTLIPISPSLTARIGENA 131
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVA---KVL- 185
+A++ +D SM+P +RK D+LI++ N GD ++ K +++ K L
Sbjct: 132 FALE-------VKDDSMIPEFRKTDVLIIDPETMPNPGDFVIAKLDGDNEVILRKYKQLS 184
Query: 186 ISRRGRSIDLMSLNCCYPVDTV 207
SR +L++LN + V
Sbjct: 185 ASRTTPEFELIALNENWASLQV 206
>gi|77164141|ref|YP_342666.1| peptidase S24, S26A and S26B [Nitrosococcus oceani ATCC 19707]
gi|254435083|ref|ZP_05048590.1| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27]
gi|76882455|gb|ABA57136.1| phage repressor protein, Serine peptidase, MEROPS family S24
[Nitrosococcus oceani ATCC 19707]
gi|207088194|gb|EDZ65466.1| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27]
Length = 225
Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 24/221 (10%)
Query: 3 SFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTE--- 56
+ H +I ++ + + + LAR AG + + ++ + +G R E
Sbjct: 2 TLKHNQIRLHNLEVLITEAG-SAAKLARMAGTNSSYLSQVRNQLPTKKGTPRSIGDELAG 60
Query: 57 SIFKILAATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
+ K + + L ++ PL+ + +G+ P
Sbjct: 61 KLEKAMKKPQGWMDTLPADGTTPQEENNAHDGPDLRSLHPLISWVQAGNWYEVSESFVPA 120
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ P SP + + + + +SM P + + D++ ++ + + G +
Sbjct: 121 -YGSELLPCPVRCSPESFV---------LRVRGSSMEPKFHEDDLIFVDPNVSADHGKYV 170
Query: 172 LIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+++ + K LI G+ L +LN +P +E+ +
Sbjct: 171 VVRLDESNEATFKQLIIEDGKQY-LKALNPDWPNRIIEVDE 210
>gi|85709159|ref|ZP_01040225.1| transcriptional regulator [Erythrobacter sp. NAP1]
gi|85690693|gb|EAQ30696.1| transcriptional regulator [Erythrobacter sp. NAP1]
Length = 227
Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 138 TRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ + SM PL GD ILI + G ++ ++ K + L+
Sbjct: 141 SAITVEGDSMEPLLNDGDEILIDRTERAFRDGVHVV--RLGETLMVKRVARAGAGRFALL 198
Query: 197 SLNCCYPVDTVEMSDIEWIARILWAS 222
S N YP V ++E I R++W S
Sbjct: 199 SQNLAYPPVEVAADELEIIGRVVWKS 224
>gi|319408671|emb|CBI82326.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 206
Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 40/185 (21%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKE-------------IPLLYFPPSGSGG 102
E + K L T ++ + L G + +PL+ + +G+
Sbjct: 23 EDVAKRLNVTQASVSKWLKDSDPRGSNRDAILALYRELTGESHLTTFVPLMGYIGAGTE- 81
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
D + + + + +A + + SM P Y+ GD++I+
Sbjct: 82 -IDPS-------FEQIPEEGL-AQVEIPFAFPDDMIAFEVRGDSMYPAYKDGDMVIVR-- 130
Query: 163 IQVNC---------GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
G +I K + IDL+S N P+ V +
Sbjct: 131 ---RRQIKTIESFIGKEAVILTHDNKRYIKQISRGMNGEIDLISWNNVSPIKNV---KVT 184
Query: 214 WIARI 218
W+ I
Sbjct: 185 WVGEI 189
>gi|13471985|ref|NP_103552.1| phage repressor protein C [Mesorhizobium loti MAFF303099]
gi|14022730|dbj|BAB49338.1| probable phage repressor protein C [Mesorhizobium loti MAFF303099]
Length = 234
Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 58/188 (30%), Gaps = 34/188 (18%)
Query: 53 PSTESIFKILA-------ATNETICQLL--------DLPFSDGRTTEKKEKEIPLLYFPP 97
P TE++ K A A + L +D +I +L
Sbjct: 52 PKTENLLKTAAFLRVDPVALGKGEVVFLDDADALSDAEIVTDAGPMPAGSMDIEVLGAAV 111
Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
G G F P G V P ++A+ SM+P Y GD L
Sbjct: 112 GGDDGDFTFNGEPAG----YVQRPPGVRNLPKVFAL-------HVLSDSMVPRYEPGD-L 159
Query: 158 ILNSAIQVNCGDRLLIKP------RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
I GD ++I+ + G K L+ R + + N T
Sbjct: 160 IYCGGRDAIPGDHVVIETFPEENEKNGKAFVKKLVKRTASELVVEQYNPPK-TLTFNRYA 218
Query: 212 IEWIARIL 219
I+ + R++
Sbjct: 219 IKHVWRVI 226
>gi|311105237|ref|YP_003978090.1| hypothetical protein AXYL_02046 [Achromobacter xylosoxidans A8]
gi|310759926|gb|ADP15375.1| helix-turn-helix family protein 5 [Achromobacter xylosoxidans A8]
Length = 245
Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 24/200 (12%)
Query: 29 RKAGLDPTSFNKSKRFGIE---------GRNRWPSTESIFKILAATNETICQ-LLDLP-F 77
R+ L T + + R G + G+ + S E + KI AA + + L +
Sbjct: 38 RRKALGWTILDLANRIGSDVGNVSRLERGKQGY-SDEILAKIAAALGCPVGELFLGVEKE 96
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
S+ T + IP+L + +G+ V P N + + S I+
Sbjct: 97 SNVELTALGSRRIPVLSYVQAGA---LTESVVPYTNPDDWLLTDLDLSRSAFALRIKGLS 153
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS----- 192
+ S + +GD+++++ +++ GD ++ K + K R
Sbjct: 154 MYSPQSEES----FNEGDLVVIDPSVEPLPGDFVVAKNGDHEATFKKYRPRGVNEKGVVV 209
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
+L+ LN YP + + +
Sbjct: 210 FELVPLNPDYPSVRSDYTQV 229
>gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753]
gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753]
Length = 222
Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 30/208 (14%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN----RWPSTESIFKILAATNET 68
+ + E L+ G A K G+ ++ G R P+ +++ +I +
Sbjct: 21 LKELRENAGLSQYGFAEKIGISQSTV---------GNWEAGSREPNFKTMERIADFFGVS 71
Query: 69 ICQLLDLPFSDGRTTEKK---EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
+ LL G E K IP++ P+G+ P + + EI
Sbjct: 72 VDYLLGRETVAGGPPEPSVPGSKWIPVIGTIPAGT---------PVEAIEDILDYEEITP 122
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
A Q + K + SM P GD++I+ G+ ++ + K +
Sbjct: 123 Q----MASQGEHFALKIKGQSMEPKISDGDVVIVRKQDDCENGEIAVVLVNGDEATVKRI 178
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+ + L+ N Y ++IE
Sbjct: 179 -KKGPEGLMLIPNNPAYEPMFYSNAEIE 205
>gi|319782474|ref|YP_004141950.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317168362|gb|ADV11900.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 234
Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 58/188 (30%), Gaps = 34/188 (18%)
Query: 53 PSTESIFKILA-------ATNETICQLL--------DLPFSDGRTTEKKEKEIPLLYFPP 97
P TE++ K A A + L +D +I +L
Sbjct: 52 PKTENLLKTAAFLRVDPVALGQGQVVFLDDAGPVADAEIVTDAGPLPASSMDIEVLGAAV 111
Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
G G F P G V P ++A+ SM+P Y GD L
Sbjct: 112 GGDDGDFTFNGEPAG----YVQRPPGVRNLPKVFAL-------HVLSDSMVPRYEPGD-L 159
Query: 158 ILNSAIQVNCGDRLLIKP------RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
I GD ++I+ R G K L+ R + + N T
Sbjct: 160 IYCGGRDAVPGDHVVIETFPEENERNGKAFIKKLVKRTAGELVVEQYNPPK-TLTFNRYA 218
Query: 212 IEWIARIL 219
I+ + R++
Sbjct: 219 IKHVWRVI 226
>gi|170723210|ref|YP_001750898.1| putative phage repressor [Pseudomonas putida W619]
gi|169761213|gb|ACA74529.1| putative phage repressor [Pseudomonas putida W619]
Length = 248
Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 52/257 (20%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESI 58
M + + + + + RH L+P+ L R+ G+ ++ ++ S++ PS +
Sbjct: 1 MQAMQKRNVATVLRELLARHGLSPTELHRRTGVPQSTLSRILSEKIAD------PSDRHV 54
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
KI + QL +E +P +D P + + V
Sbjct: 55 SKIADYFGVSTEQL----RGRAELGASREAALPAHGHADLSDISLWDDE-TPVED--DEV 107
Query: 119 GVPEIRS----PHNGIYAIQTQDTR---------------------HKTQDTSMLPLYRK 153
VP +R +G + I+ + + SMLP+ R
Sbjct: 108 SVPFLREVELAAGSGRFVIEESERARLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRD 167
Query: 154 GDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT--- 206
G + +N+ + GD L G + K + I L S N D
Sbjct: 168 GATVGVNTGKCSIGDIIDGD-LYAINHNGQLRVKQVYRLPTG-IRLRSFNRDEHPDEDYS 225
Query: 207 ---VEMSDIEWIARILW 220
++ I + + W
Sbjct: 226 FQLLQEEQISLLGHVFW 242
>gi|145298596|ref|YP_001141437.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449]
gi|142851368|gb|ABO89689.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449]
Length = 227
Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 43/223 (19%)
Query: 14 DRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
DR+ R NL+ + LA+ G+ S K + + + R+ + + AA T+
Sbjct: 5 DRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRY-----LNDLAAALGVTVD 59
Query: 71 QLLDLPFSDGRTTEK-----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
LL + + IP++ + +G+ W +
Sbjct: 60 WLLAGSGDGPEQPIPGYHNVEPAVIPQGRRIPVISYVHAGN--------------WREMC 105
Query: 120 VPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
N Y I + SMLP +++GD++I++ GD ++ +
Sbjct: 106 EQATTFDGNVEYVTASVDIGPCGFGLWMRGDSMLPQFKEGDLIIVDPDEVPQPGDYVVAR 165
Query: 175 PRTGDIVAKVLISRRG-----RSIDLMSLNCCYPVDTVEMSDI 212
+ K R +L+ LN YP + I
Sbjct: 166 NGNNEATFKKYRPRGVDENGQEVFELVPLNDDYPSMHSDRQHI 208
>gi|88706898|ref|ZP_01104597.1| Peptidase S24-like protein [Congregibacter litoralis KT71]
gi|88698820|gb|EAQ95940.1| Peptidase S24-like protein [Congregibacter litoralis KT71]
Length = 222
Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGRSID 194
+ + + SM P +R+G+++ ++ V G ++++ ++ K LI G+
Sbjct: 132 ETFVLRVRGASMEPKFREGELIFVDPQAPVEHGKFVVVRLEESNEVTFKQLILEEGKKY- 190
Query: 195 LMSLNCCYPVDTVEM 209
L +LN +P +E+
Sbjct: 191 LKTLNPDWPNRIIEV 205
>gi|299531647|ref|ZP_07045052.1| putative phage repressor [Comamonas testosteroni S44]
gi|298720363|gb|EFI61315.1| putative phage repressor [Comamonas testosteroni S44]
Length = 208
Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 64 ATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
AT + + F + + T + P++ +G P G+ + V E
Sbjct: 48 ATGTGPEKGVHADFDENVKPTPPGMRAYPVISKIQAGLVKEIVCPYEP-GDGF-AVEFGE 105
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + + + SMLP +R GD ++++ + GD + + +
Sbjct: 106 DDASDWAFF--------FEIEGDSMLPEFRPGDRVLIDPEVSPRPGDFVAARNTRQEATF 157
Query: 183 KV-----LISRRGRSIDLMSLNCCYPV 204
K + +L+ LN YPV
Sbjct: 158 KKYRVRGIDEAGQEIFELVPLNDDYPV 184
>gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Faecalibacterium prausnitzii L2-6]
Length = 210
Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 41/218 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
++ ++ + LA K G+ + K S + + P+T + +I + T LL L
Sbjct: 12 KQKGISQAELASKLGVTQQAVGKWESGKSSPD-----PAT--VARIAEILSTTADFLLGL 64
Query: 76 PFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
T +E+ IP++ +G G + E
Sbjct: 65 YRPVSNVTTPEERFFGNYAESLIPVIGTVKAGYG---------------ALAFEEDYGQE 109
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186
+ + SM P + GD+ +++ + GD +L+ G+ L
Sbjct: 110 YARVKDPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLVYGDEGE---GTLK 166
Query: 187 S--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219
+RG + L N Y ++ D+ + R++
Sbjct: 167 RYIQRGNCVVLQPFNPAYNELVIKGEDLNRLHIAGRVV 204
>gi|254360461|ref|ZP_04976610.1| possible LexA family repressor/S24 family protease [Mannheimia
haemolytica PHL213]
gi|153091001|gb|EDN73006.1| possible LexA family repressor/S24 family protease [Mannheimia
haemolytica PHL213]
Length = 218
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
++PL+ + +G D G + + +A++
Sbjct: 76 PASLGMTKVPLISYIQAGQWTGIDDFRETCG---DYEYILTDLEVSEDAFALE------- 125
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK------VLISRRGRSIDL 195
+ SM P + +GD +I++ +Q + G+ + + K L + +L
Sbjct: 126 IKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAINGDYEATFKKYRPLEDLDEYGRQHFEL 185
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
++LN Y + +I RI+
Sbjct: 186 IALNPDYHKLSTLKQEI----RII 205
>gi|262279851|ref|ZP_06057636.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260202|gb|EEY78935.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 263
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
++ +P+ + G G+F F + S YA++
Sbjct: 123 PSSKRWVPVKAYSKMGMDGYFVDMGFEGNGGDGYIPTHTAGSK---AYAVKGT------- 172
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P R G ++ + + + + + + G K I + + L+++N
Sbjct: 173 GDSMFPAIRNGWYVVCDPDAEPVPMEFVQVCLKDGRCTIKEFIGIQNDVLSLIAVNGG-E 231
Query: 204 VDTVEMSDIEWIARI 218
T M ++E I I
Sbjct: 232 RLTFNMDEVESITAI 246
>gi|299771254|ref|YP_003733280.1| putative repressor protein from bacteriophage [Acinetobacter sp.
DR1]
gi|298701342|gb|ADI91907.1| putative repressor protein from bacteriophage [Acinetobacter sp.
DR1]
Length = 262
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
+ +P+ + G G+F + V YAI+ SM
Sbjct: 126 RWVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHTAGDRS---YAIKGT-------GDSM 175
Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
P R G ++ + ++ + + + + G K I ++L+++N T
Sbjct: 176 YPAIRNGWYVVCDPDAELTPTEFVQVCLKDGRCTIKEFIGIHNNVLNLLAVNGG-ERLTF 234
Query: 208 EMSDIEWIARI 218
+M ++E I I
Sbjct: 235 DMDEVESITAI 245
>gi|240948773|ref|ZP_04753145.1| phage repressor [Actinobacillus minor NM305]
gi|240296989|gb|EER47567.1| phage repressor [Actinobacillus minor NM305]
Length = 218
Score = 56.1 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
+IPL+ + +G D G + + + +A++
Sbjct: 76 PASIGMTKIPLISYIQAGQWTGIDDFRETCG---DYEYILTDLDVSDDAFALE------- 125
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG------RSIDL 195
+ SM P + +GD++I++ + G+ + + K +L
Sbjct: 126 IKGDSMTPDFLEGDVVIIDPNEPPHAGEFVAAINGNYEATFKKYRPLGEVDNFGREHFEL 185
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
++LN YP + +I RI+
Sbjct: 186 IALNPDYPKLSTLKQEI----RII 205
>gi|194430884|ref|ZP_03063221.1| repressor protein C2 [Escherichia coli B171]
gi|194411072|gb|EDX27557.1| repressor protein C2 [Escherichia coli B171]
gi|324014358|gb|EGB83577.1| helix-turn-helix protein [Escherichia coli MS 60-1]
Length = 207
Score = 56.1 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA---IQTQDTR 139
E + IP+L + + G + ++ I A I
Sbjct: 70 AEISTRRIPILSYVQA-------------GELTEARDITDLTGEFEYILADSDIPETCFA 116
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMS 197
+ SM P +++GDI+I++ + G+ ++ K + K +L+
Sbjct: 117 LRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRPLGIGIDDFELIP 176
Query: 198 LNCCYP 203
LN YP
Sbjct: 177 LNPDYP 182
>gi|150397120|ref|YP_001327587.1| putative phage repressor [Sinorhizobium medicae WSM419]
gi|150028635|gb|ABR60752.1| putative phage repressor [Sinorhizobium medicae WSM419]
Length = 238
Score = 56.1 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 41/237 (17%)
Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--RNRWPST---ESIFKILAA 64
W A +++A R S LA G+ +SK + + R S E++ +
Sbjct: 11 WLA-EKLAARG--VASKLAEATGMSNDKITRSKELHSDDPKKRRQISLQEIEAMARFFRE 67
Query: 65 TNETICQLLDLPFSDGRTTEKKE----------------KEIPLLYFPPSGSGGFFDSGV 108
Q+ K IPL +G+ G F
Sbjct: 68 LPPGFEQMTRWLEDLSPAPTAKPIPNASFPPRWQQFPGDASIPLRGHIAAGANGRF---- 123
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
G TV P G YA+Q S P + G+ +N +V G
Sbjct: 124 IMNGQDIATVFCPPGLEGVEGAYAVQ-------VDGRSGEPRFLHGETAWVNPHQKVRQG 176
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSL---NC---CYPVDTVEMSDIEWIARIL 219
D ++++ D ++ L RS D++ L N + + +++
Sbjct: 177 DDVVVQILEDDELSSYLKRFVSRSADVLRLYQYNPGKGESHDLEFPTDKVFSVHKVV 233
>gi|153007564|ref|YP_001368779.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
gi|151559452|gb|ABS12950.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
Length = 235
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 17/144 (11%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
G +P+ G G F G V P + G Y +Q
Sbjct: 98 GEKVTGAGVMVPVYGQAVGGIDGQF----LMNGTILYEVMAPPQIAEIAGAYGVQ----- 148
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IVAKVLISRRGRSID 194
SM P Y G++ ++ +V GD ++ + + + K + +
Sbjct: 149 --ISGDSMFPRYEDGEVAFVDPRRRVKKGDYVVAQIQFDEHEPPHAYVKRFVRHNAEELV 206
Query: 195 LMSLNCCYPVDTVEMSDIEWIARI 218
L N T + + + I
Sbjct: 207 LSQFNPPKE-LTFDHDQVVSVHFI 229
>gi|291283823|ref|YP_003500641.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str.
CB9615]
gi|290763696|gb|ADD57657.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str.
CB9615]
Length = 224
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA---IQTQDTR 139
E + IP+L + + G + ++ I A I
Sbjct: 87 AEISTRRIPILSYVQA-------------GELTEARDITDLTGEFEYILADSDIPETCFA 133
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMS 197
+ SM P +++GDI+I++ + G+ ++ K + K +L+
Sbjct: 134 LRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRPLGIGIDDFELIP 193
Query: 198 LNCCYP 203
LN YP
Sbjct: 194 LNPDYP 199
>gi|218463233|ref|ZP_03503324.1| putative phage-related transcriptional regulator protein [Rhizobium
etli Kim 5]
Length = 30
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 196 MSLNCCYPVDTVEMSDIEWIARILWASQ 223
MSLN + T+++SD+EWIARI+WASQ
Sbjct: 3 MSLNPEHANRTLDLSDVEWIARIIWASQ 30
>gi|87200384|ref|YP_497641.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
gi|87136065|gb|ABD26807.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
Length = 233
Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 9/148 (6%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+ R + +IP L S G + P+G + G+
Sbjct: 89 GIVVPTTRAALAEWADIPRLPLGASAGPGALPAEEIPSGR----LRFSHRWLKGQGL--E 142
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + SM P R GD ++++ + G ++ ++ K L G
Sbjct: 143 PAMLSVIEVEGDSMEPTLRDGDEILVDRTARPMRAGIHVI--RLDDMLLVKRLEPGPGGI 200
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ ++S N YP ++E + R++W
Sbjct: 201 LRVISDNGAYPRIERPAHEVEIVGRVVW 228
>gi|158338892|ref|YP_001520069.1| S24 family peptidase [Acaryochloris marina MBIC11017]
gi|158309133|gb|ABW30750.1| peptidase, S24 family [Acaryochloris marina MBIC11017]
Length = 227
Score = 55.3 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 8/148 (5%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG + +IPL G + + + +
Sbjct: 79 RADGGIGDGTYVQIPLYDVRAGAGEGMIAED----KEQIEELMAFSRSWIRSELRTSPAH 134
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ SM P R GD+++++ D + + R G + K L G+ + ++
Sbjct: 135 LSLIHVSGDSMEPTLRPGDVVLVDQHQAEGGTDGVYVLRRDGHLQIKRLHWLSGKVLKII 194
Query: 197 SLNCCYPVDTVEMSDI----EWIARILW 220
S N Y V++S + + I R++W
Sbjct: 195 SDNPIYQPIEVDLSQLTEEFQIIGRVIW 222
>gi|220923732|ref|YP_002499034.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
gi|219948339|gb|ACL58731.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
Length = 246
Score = 55.3 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 17/130 (13%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
S + +P+L GS G +F G +V P G YA+
Sbjct: 106 SAPVAAPRYGGLMPVLGVAKGGSDGRL---IF-NGQVIESVPRPAALENVEGAYAV---- 157
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP---RTGDI---VAKVLISRRGR 191
SM P ++ G+ + ++ GD ++++ GD K ++
Sbjct: 158 ---YVSGDSMHPRFKAGEQVWVHPHRPPKRGDDVVVQLYAEDEGDPPEGYIKEFVAWTPS 214
Query: 192 SIDLMSLNCC 201
+ L N
Sbjct: 215 MLILYQHNPA 224
>gi|319405045|emb|CBI78654.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 205
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 45/187 (24%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKE-------------IPLLYFPPSGSGG 102
E + + L T ++ + L G + + +PL+ + +G+
Sbjct: 23 EDVARRLNVTQASVSKWLKDSDPRGSNRDAILELYKELKGDNHLTTFVPLMGYIGAGTQ- 81
Query: 103 FFDSG--VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
D P + + +P + + + + SMLP+Y+ GD++I
Sbjct: 82 -IDPSFEQIPE-DGLEQIEIP---------FVLPDDMIAFEVKGDSMLPVYKNGDMVI-- 128
Query: 161 SAIQVNC---------GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +I K + IDL+S N ++ +
Sbjct: 129 ---ARRRQIKTIEYFFGKEAVILTHDNKRYIKQISRGMNGEIDLLSWNA----PPIKNAK 181
Query: 212 IEWIARI 218
I WI I
Sbjct: 182 ITWIGEI 188
>gi|158334468|ref|YP_001515640.1| S24 family peptidase [Acaryochloris marina MBIC11017]
gi|158304709|gb|ABW26326.1| peptidase, S24 family [Acaryochloris marina MBIC11017]
Length = 227
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P R GD+++++ D + + R G + K L G+ + ++S N
Sbjct: 140 VSGDSMEPTLRPGDVVLVDQHQAEGGTDGVYVLRRDGHLQIKRLHWLSGKVLKIISDNPI 199
Query: 202 YPVDTVEMSDI----EWIARILW 220
Y V++S + + I R++W
Sbjct: 200 YQPIEVDLSQLTEEFQIIGRVIW 222
>gi|120610369|ref|YP_970047.1| putative phage repressor [Acidovorax citrulli AAC00-1]
gi|120588833|gb|ABM32273.1| putative phage repressor [Acidovorax citrulli AAC00-1]
Length = 220
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 11/153 (7%)
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT E Q+L P + T + ++ +Y G+GG P W P
Sbjct: 62 ATGEG--QMLSQPATPTNATPYETTKVRPVYVVGRGNGGA-----MPE-RLWTDGDFPVG 113
Query: 124 RSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ A + + + SM+P Y G+ ++ + D +L++ G +
Sbjct: 114 GTDECADVATNDPRAFLIRVEGPSMVPRYNPGEYALVEPDTEPEIEDDVLVRLVDGQTIL 173
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
K L+SRRG L S N V ++ W+
Sbjct: 174 KRLLSRRGGW-RLGSYN-SMDVLFYSFEEVTWV 204
>gi|237748145|ref|ZP_04578625.1| repressor protein cI [Oxalobacter formigenes OXCC13]
gi|229379507|gb|EEO29598.1| repressor protein cI [Oxalobacter formigenes OXCC13]
Length = 217
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--FPTGNKWNTVGVPEIRSPHNGI 130
+ K ++PL+ + +G+ + + F G+ + P S H +
Sbjct: 67 MGTTRGYFGPPPDKIGQLPLISWVQAGN---WTEAIDNFAPGDAEEWIPCPFKHSQHAFV 123
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRR 189
+ + + D S + GD + ++ + G ++++ K L+
Sbjct: 124 LKVVGKSMYNPGNDKS----FNDGDYIAVDPCREARNGSMVVVRLDDDHTATFKQLLVEP 179
Query: 190 GRSIDLMSLNCCYPVDTV 207
LM+LN +P +
Sbjct: 180 NGERMLMALNPSWPNRII 197
>gi|315143625|gb|EFT87641.1| peptidase S24-like domain protein [Enterococcus faecalis TX2141]
Length = 228
Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+L + T + K +PL+ + P ++ + V H+ +
Sbjct: 95 ELDKQNFETESRNRKVVPLVGKTAAN----------PAVLEYGDIDV----EQHSFAHVP 140
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGRS 192
+ D Q SM PL + G I+ V G+ +++ G KV+ +
Sbjct: 141 EGADCAINIQGDSMEPLIKDGSIVFYKKQCDVENGEIAIVEIDNDGVTCKKVIKDYSNKQ 200
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L S+N Y +E I I +++
Sbjct: 201 IILRSINTKYEDRILENEKIRIIGKVI 227
>gi|261493124|ref|ZP_05989660.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496453|ref|ZP_05992836.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307886|gb|EEY09206.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261311212|gb|EEY12379.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 279
Score = 54.6 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
++ + + + P G+ +++ ++ D +LIK + G + +VL++ R
Sbjct: 184 FSQDVRAYAVRIDGEKLEPRIVSGEYIVVEPGAKLQSYDEVLIKLKDGRYMIRVLLTGRN 243
Query: 191 RSIDLMSLNCCYPVDTVEMSDI---EWIARIL 219
+ N + S I E+IA I+
Sbjct: 244 KEWRYADPNTMQQDTDFDPSQIETMEYIAAII 275
>gi|239502427|ref|ZP_04661737.1| Repressor protein C2 [Acinetobacter baumannii AB900]
Length = 232
Score = 54.6 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 28/149 (18%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHNGIYA 132
S+ T+ + IPLL + + G F + P G + T +++
Sbjct: 84 ESNVGPTKNNLRTIPLLDYVQA---GLFHDVGYDGINPIGESYTTY----QGYKPECVFS 136
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR--- 189
+ K + SM P ++ GD ++++++++ G ++ + I R
Sbjct: 137 L-------KVEGNSMSPEFKAGDEIVVDASLEPKPGSLVIAQEVQHGIARTTFKKYRVIG 189
Query: 190 -----GRSIDLMSLNCCYPVDTVEMSDIE 213
++L+ LN YP T + IE
Sbjct: 190 INEFGVDVVELVPLNPDYP--TYNSTQIE 216
>gi|264678802|ref|YP_003278709.1| prophage repressor [Comamonas testosteroni CNB-2]
gi|262209315|gb|ACY33413.1| putative prophage repressor [Comamonas testosteroni CNB-2]
Length = 179
Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 32/171 (18%)
Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
W ++ + L+ T + + L + +P++ + +G
Sbjct: 19 WMDQPALREELSTTGGSNAEFTKLE---------GVRRVPVISYVQAGL----------- 58
Query: 112 GNKWNTV-GVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
W + V + H+ + + + SM P +++GD +I++ +++
Sbjct: 59 ---WTEIVSVFQPSDAHDWLITSDKHSKETFVLTIRGNSMEPDFKEGDAVIIDPSVKPRP 115
Query: 168 GDRLLIKPRTGDIVAKVLISRR-----GRSIDLMSLNCCYPVDTVEMSDIE 213
G + K + K R +L+ LN YP + IE
Sbjct: 116 GSFVAAKNGREEATFKKYRPRSIDVLGNEVFELVPLNEDYPTMRSDEQPIE 166
>gi|326386994|ref|ZP_08208604.1| putative phage repressor [Novosphingobium nitrogenifigens DSM
19370]
gi|326208175|gb|EGD58982.1| putative phage repressor [Novosphingobium nitrogenifigens DSM
19370]
Length = 250
Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 37/230 (16%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
+A ++ S L+ G + ++F +G R K+ T+
Sbjct: 29 ALARERGVSLSALSGMIGRNAAYL---QQFVRKGSPR--------KLEENDRRTLAMFFG 77
Query: 75 LPFSD-GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNGIYA 132
+ S+ G + + G S P +W + + S G A
Sbjct: 78 VDESELGAPAANEVAVVQSGGRLAFARNGSARSASRPVEAEWVDIPRLALGASAGPGTLA 137
Query: 133 IQTQDTR---------------------HKTQDTSMLPLYRKGDILILNSAI-QVNCGDR 170
+ ++ + SM P GD ++++ + G
Sbjct: 138 LDEAESGRLRFSQRWLRTLGLDPGQLSVIEVAGDSMEPTLHDGDEILVDRSPRPWRDGIH 197
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
++ ++ K L + +I +MS N YP D+ I R++W
Sbjct: 198 VV--RIDEVLLVKRLETGPAGTIRVMSDNPAYPRIERAYEDVAIIGRVVW 245
>gi|167032201|ref|YP_001667432.1| putative phage repressor [Pseudomonas putida GB-1]
gi|166858689|gb|ABY97096.1| putative phage repressor [Pseudomonas putida GB-1]
Length = 234
Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM + GD L+++ I D + + GD+ K L G + ++S N YP
Sbjct: 148 GDSMTGTFADGDALLVDRGITEVKTDAIYVFTLDGDLYIKRLQRLTGGQLRMISDNPIYP 207
Query: 204 VDTVEMSDIEWI---ARILWA 221
T+++S I+ + AR+L A
Sbjct: 208 PITIDLSMIDRMHIQARVLLA 228
>gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10]
Length = 224
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 39/230 (16%)
Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
+I + LT + LA++ GLD TS + ++ +G T I ++ AA +
Sbjct: 6 SIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQG------TAYIAQLAAACGVSALW 59
Query: 72 LLDLP--------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTV 118
L +EK IP G+F+ W
Sbjct: 60 LAAGHGSMNNNEEVPPRAPSEKDYALIPQYTARGECGDGYFNDHVETTEGLVFKRDW--- 116
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPR 176
+ + S ++ I + SM P +GD+++ + ++ D+ +I+
Sbjct: 117 -LKRVNSKPENLFVIYAE-------GDSMEPYIFEGDVVLFD-VAKIEPQDKQVYVIRRP 167
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARILW 220
G I K L + + + S N YP + + D+ I R++W
Sbjct: 168 DGGISIKRLNQQLSGAWLIRSDNPDKTAYPDEIASETSVHDLPIIGRVIW 217
>gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2]
gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2]
Length = 208
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPT 111
P ES+ K+ N +I + K + IP++ + +G + F
Sbjct: 43 PGGESLSKLAKYFNTSID-YILYGTEFEGNLITKMRRIPVISWVQAGQFTECKAAEVFSE 101
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVN 166
+KW + + +A++ + SM LP +G +I++ +
Sbjct: 102 VDKWVETSL----RIGDSAFALE-------VKGDSMTNPNGLPTIPEGATVIVDPDAEPL 150
Query: 167 CGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
G ++ + + K L+ + L+ LN YP ++
Sbjct: 151 HGKIVVARLDGTNEATVKKLVIDGPQKF-LVPLNPRYPNISI 191
>gi|146342189|ref|YP_001207237.1| putative LexA repressor [Bradyrhizobium sp. ORS278]
gi|146194995|emb|CAL79020.1| putative LexA repressor [Bradyrhizobium sp. ORS278]
Length = 208
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 44/211 (20%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
I+R E+ T GLAR G+ P + + +IL + + +
Sbjct: 7 IERALEKPGKTKGGLARAMGVRPGA--------------------VSEILG--GQRLIKA 44
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
++P T + +P++ G+G + + V + I +
Sbjct: 45 AEIPL---ITEYLELNSVPIMG--RVGAGSVIEPD-------YEQVPLEGIG-EVALPFP 91
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNC--GDRLLIKPRTGDIVAKVLIS- 187
I + + SMLP Y GD++++ ++ G+ +++ ++G+ K +
Sbjct: 92 IFEETIAFEVTGDSMLPKYENGDVIVVYKEQRHPLSSYYGEEAVVRLKSGERYLKTIERG 151
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ ++L S N P+ V ++WI I
Sbjct: 152 KSPSVVNLKSFN-AKPIVGV---KLDWIGEI 178
>gi|296107978|ref|YP_003619679.1| hypothetical protein lpa_03412 [Legionella pneumophila 2300/99
Alcoy]
gi|295649880|gb|ADG25727.1| hypothetical protein lpa_03412 [Legionella pneumophila 2300/99
Alcoy]
Length = 231
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 19/175 (10%)
Query: 16 MAERHNLTPSGLARKAGLDPTSFNK-SKRFGIEGRNRWPSTESIFKILAAT-NETICQLL 73
+ + +N++ S LAR GL + ++ + + R S K +AA N ++ LL
Sbjct: 29 LMKENNVSESDLARALGLPYNTIHRLASGHTTDPRI------STLKSIAAYFNVSLDTLL 82
Query: 74 DLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
+ S T K +P++ + + F S W + + I + Y
Sbjct: 83 NPIESVTNPLKTNSNPKAVPIISWEQISNNEFLSSIDHQNWVNWLPIPLVSIDNLSLNAY 142
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVL 185
A++++ SM P + G +++ + GD +LIK + G + + L
Sbjct: 143 ALESRP--------SMYPRFPTGTFFVIDPECKPIDGDLILIKIKKDGAVSLREL 189
>gi|54293108|ref|YP_125523.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens]
gi|53752940|emb|CAH14376.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens]
Length = 234
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 21 NLTPSGLARKAG-LDPTSFNKSKRFGI--EGRNRWPSTESIFKILAATNETICQLLDLPF 77
LT L AG L T R +G R P E I + A + + L+ L
Sbjct: 32 GLTLKALGELAGGLKQT------RLTNWEQGV-RTPGPEEIKSLAEALDVSPAYLMCLSD 84
Query: 78 SDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPEIRSPHNG 129
KK IPLL + + + G + +PE+
Sbjct: 85 EAQVKVVKKTSHLIPLLDHHQACQARLHVNTIRVQGTCGDAALISVSAALLPELSDE--- 141
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT---GDIVAKVLI 186
+A+ K D SM+P R GD+LI++ +I+ GD +++K + + +
Sbjct: 142 AFAL-------KMTDESMMPEIRVGDVLIVDPSIEPAPGDFVVVKVPSISNAIVCKYRKL 194
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
S +L++ N +P TV +DI+ A I+
Sbjct: 195 SYTSPEFELLTANDNWPNITV-TADID--AEII 224
>gi|289679295|ref|ZP_06500185.1| transcriptional repressor pyocin R2_PP [Pseudomonas syringae pv.
syringae FF5]
Length = 244
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
+ ++PL+ + +G+ + ++ F + + + P S + ++ ++
Sbjct: 110 PLRFGKVPLISWVQAGA--WCEAANFDPYDNEDWISCPVPISKNGFALKVRGDSMTNQGS 167
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCY 202
S Y G I+ ++ I+ N GDR++ + PRT ++ KVL+ GR L +N Y
Sbjct: 168 GRS----YPAGCIIFVDPDIEANPGDRVIARVPRTDEMTFKVLVEDAGRQF-LRPINPQY 222
Query: 203 P 203
P
Sbjct: 223 P 223
>gi|307310240|ref|ZP_07589889.1| putative phage repressor [Sinorhizobium meliloti BL225C]
gi|306899792|gb|EFN30417.1| putative phage repressor [Sinorhizobium meliloti BL225C]
Length = 209
Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 81 RTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
T K++P+L S G F T + + V P IY++
Sbjct: 66 PTNSAMPKDVPVLGTAAGSHHRGAFQL----TSDAIDYVRRPPALMGTKDIYSL------ 115
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--------DIVAKVLISRRGR 191
+ +SM P Y +GD++ ++ GD ++++ R G + + + R G
Sbjct: 116 -YVEGSSMEPQYWQGDLVYVHPHKPARSGDAVVVQCRIGDEEPDGTVEATIGLYVRRTGE 174
Query: 192 SIDLMSLNCC 201
++ + N
Sbjct: 175 ALIIRKHNPP 184
>gi|150396878|ref|YP_001327345.1| putative phage repressor [Sinorhizobium medicae WSM419]
gi|150028393|gb|ABR60510.1| putative phage repressor [Sinorhizobium medicae WSM419]
Length = 233
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 53/231 (22%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
MT H +I E + M +L+P + KAGL + R + R++ P+ K
Sbjct: 1 MTETIHDRIKERLRIM----DLSPQAASMKAGLSKDTL----RKLLANRDQLPT----GK 48
Query: 61 ILAATNETICQ-----LLDLPFSDGRTTEKK----------------EKEIPLLYFPP-S 98
L+A + L + + + K++P+L S
Sbjct: 49 TLSALAPALEVSEQWLLTGQDSGPSQPVQPQQEVRVANIELPTNSAMPKDVPVLGTAAGS 108
Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
G F T + + V P IY++ + +SM P Y +GD++
Sbjct: 109 HHRGAFQL----TSDAIDYVRRPPALMGTKDIYSL-------YVEGSSMEPQYWQGDLVY 157
Query: 159 LNSAIQVNCGDRLLIKPRTG--------DIVAKVLISRRGRSIDLMSLNCC 201
++ GD ++++ R G + + + R G ++ + N
Sbjct: 158 VHPHKPARSGDAVVVQCRIGDEEPDGTVEATIGLYVRRTGEALIIRKHNPP 208
>gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus
TK-6]
Length = 311
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P++ + FP + V + Y + + + SM P
Sbjct: 179 VPVVGKAGA---------GFPHSPS--DIEVIGVVFVSKSPYLKEGKIFAVQVSGDSMHP 227
Query: 150 LYRKGDILILN----SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
+GD ++ + G ++++ +G+++ K L+ G ++ L N YP
Sbjct: 228 ALTEGDYVVFQTYEGDGSDIPNGKIVVVRNHSGELLVKRLLKMNG-TVLLAGDNPKYPPI 286
Query: 206 TVEMSDIEWIARIL 219
+ ++ E + RI+
Sbjct: 287 FPQQAEAEGL-RIV 299
>gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6]
gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6]
Length = 235
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P++ + FP + V + Y + + + SM P
Sbjct: 103 VPVVGKAGA---------GFPHSPS--DIEVIGVVFVSKSPYLKEGKIFAVQVSGDSMHP 151
Query: 150 LYRKGDILILN----SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
+GD ++ + G ++++ +G+++ K L+ G ++ L N YP
Sbjct: 152 ALTEGDYVVFQTYEGDGSDIPNGKIVVVRNHSGELLVKRLLKMNG-TVLLAGDNPKYPPI 210
Query: 206 TVEMSDIEWIARIL 219
+ ++ E + RI+
Sbjct: 211 FPQQAEAEGL-RIV 223
>gi|238923636|ref|YP_002937152.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale
ATCC 33656]
gi|238875311|gb|ACR75018.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale
ATCC 33656]
Length = 213
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G V + + A + + SM+P GD +I+ GD
Sbjct: 95 AGYGKEAVEEVIGQIEISPSMAAKGDYFGLLIKGDSMIPTLYDGDTVIVERTDDAESGDL 154
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
++ D K L + I L+ N Y S+I+
Sbjct: 155 VIALVNGSDATCKRLQ-KYAEGIALIPQNPVYEPMRFTESEID 196
>gi|329849056|ref|ZP_08264084.1| XRE family transcriptional regulator [Asticcacaulis biprosthecum
C19]
gi|328844119|gb|EGF93688.1| XRE family transcriptional regulator [Asticcacaulis biprosthecum
C19]
Length = 197
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 26/145 (17%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGG-FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+E ++P++ +G G + D +++ + I+
Sbjct: 64 AGIGPMREAKVPVIGRALAGPDGSYIDD--------YDSGDF-----EPLEPFNIE-DSV 109
Query: 139 RHKTQDTSMLPLYRKGDILIL-----NSAIQVNCGDRLLIKPRTGDIVAKVLI-SRRGRS 192
TSM P + G+I + + + +N ++L++ G + K+L S+
Sbjct: 110 AVIVDGTSMTPRFMPGEIAVFGHKYDDPSPLLNK--QVLVRTIDGQRMIKILRSSKTPGL 167
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIAR 217
DL SLN + +E ++W AR
Sbjct: 168 WDLHSLNPAFAP--IEAIAVDW-AR 189
>gi|169634082|ref|YP_001707818.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii SDF]
gi|169152874|emb|CAP01907.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii]
Length = 260
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 11/149 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ + + + +++ +P+ + G G+F + V G
Sbjct: 106 EEAVKFVQTPTKPFPIQKRYVPVKAYSKIGMDGYFTDMGYDGNAGDGYVPTHTAGPRAYG 165
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I K SM P R G ++ + ++ + + + + G K I
Sbjct: 166 I----------KGTGDSMFPAIRSGWYVVCDPDAELVPTEFVQVCLKDGRCTIKEFIGIH 215
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ L+++N EM ++E I I
Sbjct: 216 NGVLSLIAVNGG-ERFFFEMDEVESITAI 243
>gi|163867627|ref|YP_001608826.1| hypothetical protein Btr_0370 [Bartonella tribocorum CIP 105476]
gi|161017273|emb|CAK00831.1| hypothetical protein BT_0370 [Bartonella tribocorum CIP 105476]
Length = 216
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 23/168 (13%)
Query: 58 IFKILAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
+ K+L T + +LL++ G + +PL+ +G
Sbjct: 61 VNKMLKGTRDISARELLEISKLTGASIPTNH-LVPLIGSVGAGGEIIAIDSG-----CLE 114
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIK 174
V P + + SM P +G +L + + +R +IK
Sbjct: 115 EVEAPP---------SAPKGTVAVRVVGDSMFPAIEEGSLLFYSYHLPPENLINNRAIIK 165
Query: 175 PRTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ G + KVL +G+ + L S+N Y + ++EW A I W
Sbjct: 166 TKCGKVYIKVLRLGKEKGKWV-LSSINGKYAD--IVDVELEWCAPIDW 210
>gi|237748353|ref|ZP_04578833.1| predicted protein [Oxalobacter formigenes OXCC13]
gi|229379715|gb|EEO29806.1| predicted protein [Oxalobacter formigenes OXCC13]
Length = 228
Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 121 PEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
P + P ++ + ++ + SM P++++GD +IL+ GD ++ K
Sbjct: 108 PALGDPLGWLFTHSNLSSRAYALEVSGNSMQPVFQEGDWIILDPMAVPEPGDFVVAKCGE 167
Query: 178 GDIVA------KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI-----ARI 218
+ K L + + +L+ LN +P ++ IE I RI
Sbjct: 168 KKELIFRKYRPKGLDNSGKMTFELVPLNEDFPSLRSDILPIEIIGTLIEHRI 219
>gi|331666049|ref|ZP_08366943.1| repressor protein phage e14 [Escherichia coli TA143]
gi|331057100|gb|EGI29094.1| repressor protein phage e14 [Escherichia coli TA143]
Length = 185
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 41 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 86
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 87 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 146
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 147 Y-LKALNPNWPEPYI 160
>gi|323957141|gb|EGB52866.1| peptidase S24 [Escherichia coli H263]
gi|324112045|gb|EGC06023.1| peptidase S24 [Escherichia fergusonii B253]
gi|332341602|gb|AEE54936.1| e14 phage repressor protein [Escherichia coli UMNK88]
Length = 185
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 41 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 86
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 87 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 146
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 147 Y-LKALNPNWPEPYI 160
>gi|323161382|gb|EFZ47289.1| peptidase S24-like family protein [Escherichia coli E128010]
gi|323945404|gb|EGB41458.1| peptidase S24 [Escherichia coli H120]
Length = 197
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 53 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 98
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 99 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 158
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 159 Y-LKALNPNWPEPYI 172
>gi|309704840|emb|CBJ04191.1| e14 prophage; repressor protein phage e14 [Escherichia coli ETEC
H10407]
Length = 224
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 80 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 125
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 126 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 185
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 186 Y-LKALNPNWPEPYI 199
>gi|218703074|ref|YP_002410703.1| repressor protein phage e14; e14 prophage [Escherichia coli IAI39]
gi|218373060|emb|CAR20950.1| repressor protein phage e14; e14 prophage [Escherichia coli IAI39]
gi|294490166|gb|ADE88922.1| peptidase, S-24 domain protein [Escherichia coli IHE3034]
Length = 224
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 80 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 125
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 126 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDSGETTFKRLIEDGTQR 185
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 186 Y-LKALNPNWPEPYI 199
>gi|148609423|ref|YP_001272554.1| Repressor [Phage cdtI]
gi|194426862|ref|ZP_03059415.1| repressor protein C2 [Escherichia coli B171]
gi|148524752|dbj|BAF63374.1| Repressor [Phage cdtI]
gi|194415198|gb|EDX31467.1| repressor protein C2 [Escherichia coli B171]
Length = 224
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 80 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 125
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 126 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 185
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 186 Y-LKALNPNWPEPYI 199
>gi|19549021|ref|NP_599066.1| repressor [Enterobacteria phage SfV]
gi|260856753|ref|YP_003230644.1| putative phage repressor protein [Escherichia coli O26:H11 str.
11368]
gi|19483765|gb|AAL89436.1| repressor [Enterobacteria phage SfV]
gi|257755402|dbj|BAI26904.1| putative phage repressor protein [Escherichia coli O26:H11 str.
11368]
gi|323155025|gb|EFZ41215.1| peptidase S24-like family protein [Escherichia coli EPECa14]
Length = 224
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 80 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 125
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 126 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 185
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 186 Y-LKALNPNWPEPYI 199
>gi|16129108|ref|NP_415663.1| e14 prophage; repressor protein phage e14 [Escherichia coli str.
K-12 substr. MG1655]
gi|89107991|ref|AP_001771.1| repressor protein phage e14 [Escherichia coli str. K-12 substr.
W3110]
gi|91212005|ref|YP_541991.1| putative phage repressor [Escherichia coli UTI89]
gi|117624884|ref|YP_853797.1| putative phage repressor [Escherichia coli APEC O1]
gi|218559636|ref|YP_002392549.1| repressor protein phage e14; e14 prophage [Escherichia coli S88]
gi|237706738|ref|ZP_04537219.1| repressor protein phage [Escherichia sp. 3_2_53FAA]
gi|256018600|ref|ZP_05432465.1| repressor protein phage e14; e14 prophage [Shigella sp. D9]
gi|300823465|ref|ZP_07103595.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
gi|301020180|ref|ZP_07184306.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
gi|331650000|ref|ZP_08351073.1| repressor protein phage e14 [Escherichia coli M605]
gi|332279667|ref|ZP_08392080.1| repressor protein phage e14 [Shigella sp. D9]
gi|14195551|sp|P75974|YMFK_ECOLI RecName: Full=Putative lambdoid prophage e14 repressor protein C2
gi|1787391|gb|AAC74229.1| e14 prophage; repressor protein phage e14 [Escherichia coli str.
K-12 substr. MG1655]
gi|4062720|dbj|BAA35971.1| repressor protein phage e14 [Escherichia coli str. K12 substr.
W3110]
gi|91073579|gb|ABE08460.1| putative phage repressor [Escherichia coli UTI89]
gi|115514008|gb|ABJ02083.1| putative phage repressor [Escherichia coli APEC O1]
gi|218366405|emb|CAR04157.1| repressor protein phage e14; e14 prophage [Escherichia coli S88]
gi|226899778|gb|EEH86037.1| repressor protein phage [Escherichia sp. 3_2_53FAA]
gi|260449716|gb|ACX40138.1| peptidase S24 and S26 domain protein [Escherichia coli DH1]
gi|294490545|gb|ADE89301.1| peptidase, S-24 domain protein [Escherichia coli IHE3034]
gi|300398887|gb|EFJ82425.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
gi|300524083|gb|EFK45152.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
gi|307625781|gb|ADN70085.1| repressor protein phage e14; e14 prophage [Escherichia coli UM146]
gi|315135778|dbj|BAJ42937.1| e14 prophage; repressor protein phage e14 [Escherichia coli DH1]
gi|315284913|gb|EFU44358.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
gi|323951131|gb|EGB47007.1| peptidase S24 [Escherichia coli H252]
gi|331040945|gb|EGI13102.1| repressor protein phage e14 [Escherichia coli M605]
gi|332102019|gb|EGJ05365.1| repressor protein phage e14 [Shigella sp. D9]
Length = 224
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 80 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 125
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 126 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 185
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 186 Y-LKALNPNWPEPYI 199
>gi|302340525|ref|YP_003805731.1| transcriptional repressor, LexA family [Spirochaeta smaragdinae DSM
11293]
gi|301637710|gb|ADK83137.1| transcriptional repressor, LexA family [Spirochaeta smaragdinae DSM
11293]
Length = 204
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 15/139 (10%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
L + + ++PLL +G + N + +P +A+
Sbjct: 68 LNREASPEVQPELIDVPLLGNVAAGQPLIAEE------NCEQVLKIPASALRPGRYFAL- 120
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SML GD I+ Q GD ++ + + K R I
Sbjct: 121 ------RVKGDSMLNAGILDGDTAIIQQTEQARNGDIVVARVNDEAVTLKRFYRETNR-I 173
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L + N YP + + I
Sbjct: 174 RLKAENPVYPPIFTQHARI 192
>gi|160897372|ref|YP_001562954.1| peptidase S24/S26 domain-containing protein [Delftia acidovorans
SPH-1]
gi|160362956|gb|ABX34569.1| peptidase S24 and S26 domain protein [Delftia acidovorans SPH-1]
Length = 215
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 12/146 (8%)
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
AT ++ D ++PL+ +G+ P G+ + P
Sbjct: 63 ATGVGPREMDGTDEDD-----DTLGKVPLISSVQAGNWSEIVDNFQP-GDASEWIPCPAK 116
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVA 182
PH ++ + + + P Y G+I+ ++ GDR++++ D
Sbjct: 117 HGPHTFALTVEGES----MSNPGVHPSYEPGNIIFVDPGRSAQPGDRVVVRLEAQDQATF 172
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE 208
K + GR L ++N + +E
Sbjct: 173 KQYLEEDGRKF-LRAINPDWRPKFIE 197
>gi|281356220|ref|ZP_06242713.1| transcriptional repressor, LexA family [Victivallis vadensis ATCC
BAA-548]
gi|281317589|gb|EFB01610.1| transcriptional repressor, LexA family [Victivallis vadensis ATCC
BAA-548]
Length = 209
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 21/140 (15%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR---SPHNGIYAIQT 135
RT IPLL + P+ ++ E S
Sbjct: 72 GSRTMPNCALAIPLLGRVNA---------GLPS----ESIEFKEGEVCISNTMLGEHTPE 118
Query: 136 QDTRHKTQDTSM--LPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q + Q SM L +Y GDI+I GD +++ G++ K + G
Sbjct: 119 QMFALRVQGESMRDLGIY-DGDIVICGQGASKPRPGD-IVVALVQGEVTVKSYFPKTGGR 176
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I+L N + V ++D+
Sbjct: 177 IELRPANPDFSVQVYPIADV 196
>gi|167586258|ref|ZP_02378646.1| putative prophage repressor [Burkholderia ubonensis Bu]
Length = 201
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 35/196 (17%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
I + +R L+ + LARK G+ P + ++ E P ++ I A T+ L
Sbjct: 14 IRALMQRQGLSDADLARKTGVSPATLSRVLSMATED----PRISTVMAIADALGTTVGYL 69
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
L ++ IP+L + + G +D +W TV P G
Sbjct: 70 LQ---------SERAYPIPILGWDEMLGYARGVYDVA---RNTRWLTVDTPRRP----GT 113
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR- 189
+A +T+ SM P +R+G I+I+ I ++ G+ L
Sbjct: 114 FAARTKP--------SMAPRFREGSIVIVEPGIAFRDAQVVVAAIDGGEP---TLRRVTQ 162
Query: 190 -GRSIDLMSLNCCYPV 204
G ++ L L
Sbjct: 163 DGEAVWLKGLAPSPAD 178
>gi|323965383|gb|EGB60839.1| peptidase S24 [Escherichia coli M863]
Length = 185
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
D T K+ +P++ + +G+ W VG E+ Y
Sbjct: 41 PDVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTTETYPCPVPC 86
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 87 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 146
Query: 193 IDLMSLNCCYPVDTV 207
L +LN +P +
Sbjct: 147 Y-LKALNPNWPEPYI 160
>gi|312795579|ref|YP_004028501.1| hypothetical protein RBRH_01118 [Burkholderia rhizoxinica HKI 454]
gi|312167354|emb|CBW74357.1| unnamed protein product [Burkholderia rhizoxinica HKI 454]
Length = 135
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
N ++A + + SM P+ GD +++N + D + + G ++ K L
Sbjct: 38 ENYLHARPEDLSVLRVHGDSMYPVLHDGDNILINH-AFTSPQDGIYVIRVDGQVLVKRLQ 96
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD 211
G + ++S N YP V + D
Sbjct: 97 RLHGPFLRVISANPDYPPYEVPIED 121
>gi|307320170|ref|ZP_07599590.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|306894216|gb|EFN24982.1| putative phage repressor [Sinorhizobium meliloti AK83]
Length = 231
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/217 (19%), Positives = 64/217 (29%), Gaps = 38/217 (17%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
+I AI +R L +A G+D + EG PSTE++ +
Sbjct: 9 QIGTAIRTARKRRGLVQRNIAEHLGIDVAAV-----GMWEGGRNLPSTENLMRAALFLGI 63
Query: 68 TICQLL---------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
L SD ++ LL G G F G
Sbjct: 64 NPVALARGELVYINGTDDLADAEIISDPSPPPTGPMDVKLLGVSYGGDDGDFTFNGEVAG 123
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
V P + + ++A+ SM+P Y GDI I GD ++
Sbjct: 124 ----YVRRPPGIASLHNVFAL-------HVLSDSMVPRYDPGDI-IYCGGRDAVPGDHVV 171
Query: 173 IKPRT------GDIVAKVLISRRGRSIDLMSLNCCYP 203
++ G K L R + I + N
Sbjct: 172 VEMFGESEDQPGKSFIKRLKQRTTKQIIVDQYNPAKE 208
>gi|225023311|ref|ZP_03712503.1| hypothetical protein EIKCOROL_00164 [Eikenella corrodens ATCC
23834]
gi|224943956|gb|EEG25165.1| hypothetical protein EIKCOROL_00164 [Eikenella corrodens ATCC
23834]
Length = 211
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 15/154 (9%)
Query: 56 ESIFKILAATNETICQLL-----DLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVF 109
E KI T ++ L+ + +PL P +G G FFD+
Sbjct: 40 EQCIKIAEQTGVSLDWLILGKGESDKNTAAGKATPSVVLVPLYDVPVSAGHGSFFDAE-- 97
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
N + + A Q + SM P + DI++++ Q GD
Sbjct: 98 ---NVIQQIPFDAEWLEREDLIA--GQLACLPIEGDSMSPGLKTSDIVLVDLTHQ--RGD 150
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+ + G + K L + + S N Y
Sbjct: 151 GVFVLRLNGALRIKRLQWLADGRLRISSDNPIYE 184
>gi|254362846|ref|ZP_04978921.1| possible LexA family repressor/S24 family protease [Mannheimia
haemolytica PHL213]
gi|153094483|gb|EDN75317.1| possible LexA family repressor/S24 family protease [Mannheimia
haemolytica PHL213]
Length = 219
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 27/171 (15%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNK 114
E + K+L + ET+ + K PL+ +G FD F
Sbjct: 59 EILSKVLGVSPETL----AFDTNVQLARPTKSNSYPLISNIQAGLWTEAFD---FKDSEG 111
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
++ + P + SM P + +GD+++++ + + GD +
Sbjct: 112 YDYIDTEIDAGPDAFF---------LRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVAAV 162
Query: 175 PRTGDIVAK------VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
TG+ K +L+ LN +P + DI RI+
Sbjct: 163 NGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDI----RII 209
>gi|53802873|ref|YP_115350.1| prophage MuMc02, S24 family peptidase [Methylococcus capsulatus
str. Bath]
gi|53756634|gb|AAU90925.1| prophage MuMc02, peptidase, family S24 [Methylococcus capsulatus
str. Bath]
Length = 193
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 23/160 (14%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-----NKWNTVGVPEIRSPHN 128
L + +PL + GG W +
Sbjct: 41 HLQRQPAVYSPDDYVALPLYDVRAAAGGGVVPDTENVVDFLHFKKAWLRTELRSSPDDLY 100
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKPRTGDIVAKVLI 186
IY SM P KGD++++N Q G +++ G ++ K L
Sbjct: 101 LIY----------VDGESMEPTLCKGDVILVNHRDKFQGRDGGIYVLRL-DGALLVKRLQ 149
Query: 187 SRRGRSIDLMSLNCCYPV-----DTVEMSDIEWIARILWA 221
+ G I + S N Y ++ +D I R++WA
Sbjct: 150 RKMGGIIKVTSDNPVYEPFEVGAQDLDRADFSIIGRVVWA 189
>gi|303251516|ref|ZP_07337691.1| hypothetical protein APP6_0720 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253708|ref|ZP_07535574.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidase) [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|302649636|gb|EFL79817.1| hypothetical protein APP6_0720 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306858820|gb|EFM90867.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidase) [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
Length = 217
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 39/198 (19%)
Query: 42 KRFGIEGRN----RWPSTESIFKILAATNE---------TICQLLDLPFSDGRTTEKKEK 88
K G G R P+ + + ++ T TI + KK +
Sbjct: 29 KTQGAIGHWLTGKRTPNFDDVATMINITGIDKVILNGDGTIEDF---DPNVSVINIKKSR 85
Query: 89 EIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
PL+ +G+ FD + N + + + SM
Sbjct: 86 SYPLISSIQAGTWTEVFD---YRDSNGYEYIDTEIDAGEDAFF---------LRISGLSM 133
Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK------VLISRRGRSIDLMSLNCC 201
P + +GD+++++ Q GD + G+ K L +L+ LN
Sbjct: 134 EPKFSEGDLVLIDVRKQPRPGDFVAAVNGNGEATLKRYRELGDLSPSGNPHFELVPLNPD 193
Query: 202 YPVDTVEMSDIEWIARIL 219
+P + DI RI+
Sbjct: 194 FPTLSSMKQDI----RII 207
>gi|297565617|ref|YP_003684589.1| peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM
9946]
gi|296850066|gb|ADH63081.1| Peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM
9946]
Length = 217
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 24/159 (15%)
Query: 53 PST-ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
P+T E I +L T E Q + T + +G+G P
Sbjct: 56 PTTLERILDVLQWTPEEFSQETGIQLPGSEITATIPVTRYRIPVVDAGAG--------P- 106
Query: 112 GNKWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
WN + +P+++ +++ + SM P + GD+++ + V
Sbjct: 107 -PMWNENAEYITLHIPDLKGKP------ESELFAVRVGGDSMQPTLKDGDVVVFWTGGAV 159
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
G + + ++ K L G L S N +P
Sbjct: 160 EPGRIVAVHVHWDGVIVKRLQRYNGSWY-LYSDNPDHPP 197
>gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827]
gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827]
Length = 207
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 26/209 (12%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
+ NLT + LA KAG+ S +S G + R + I K L + + L
Sbjct: 12 QELNLTQTELAEKAGISQQSI-ESIENGRTKKPR--NIIEIAKALQ----SHPEWLLNGK 64
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HNGIYAIQTQ 136
S +E + IPLL + + G F P + + +A+
Sbjct: 65 SIMPISEVNSRRIPLLSYVQA---GLFKDA-NPITDYEGNFEYILVDDDISANAFAL--- 117
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS--ID 194
+ + SM P +++GDI+++++ I N G+ + K K + +
Sbjct: 118 ----RVEGDSMTPEFKEGDIVVIDTEIWPNPGEFVFAKNGGNQGTFKKYRPTGIGTGEFE 173
Query: 195 LMSLNCCYPVDTVEMSDIEWI-----ARI 218
L+ LN YP I I RI
Sbjct: 174 LVPLNPDYPTLNSHDYQISLIGVMVEHRI 202
>gi|218296125|ref|ZP_03496894.1| peptidase S24 and S26 domain protein [Thermus aquaticus Y51MC23]
gi|218243502|gb|EED10031.1| peptidase S24 and S26 domain protein [Thermus aquaticus Y51MC23]
Length = 220
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPT 111
E++ ++L T + + IP+ + +G+G ++
Sbjct: 60 EAVQRLLHVLQWTPEEF-SRETGIHIPGSEIPGAIPVVRYRIPVIDAGAG----PPMWNE 114
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G ++ T+ +PE+R + + + + SM P R GDI++ + G +
Sbjct: 115 GAEYITLHIPELRGKR------EEELFAVRVKGDSMEPTLRDGDIVVFWTGGAPEPGRIV 168
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ ++ K L G L S N +P + +D
Sbjct: 169 AVHVHWDGVIVKRLQRYNGSWY-LYSDNPDHPPVPLTEND 207
>gi|323517351|gb|ADX91732.1| S24 family peptidase [Acinetobacter baumannii TCDC-AB0715]
Length = 218
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 22/171 (12%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSD-------GRTTEKKEKEIPLLYFPPSGSGGFFD 105
P TES+ K+ + L+ + +P++ + +GS F
Sbjct: 42 PKTESLKKLAELFGVSDSWLMHGTEEKLDNNVVLSEKMPSDGRPVPVISWVAAGS---FS 98
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
+ +P R YA+ K SM P + GD + +N IQ
Sbjct: 99 PIETVLKDTEIEEYLPPNRRCGKNGYAL-------KVVGYSMAPTFLPGDRIYVNPDIQT 151
Query: 166 --NCGDRLLIKPRTGDIVA---KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D L+I GD A K++I G S L LN +P +++S+
Sbjct: 152 FDLKTDDLVIVACAGDSEATFKKLIIEGEGSSKFLEPLNPDWPDKIIKLSE 202
>gi|320450736|ref|YP_004202832.1| LexA repressor [Thermus scotoductus SA-01]
gi|320150905|gb|ADW22283.1| LexA repressor [Thermus scotoductus SA-01]
Length = 115
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+T K SM PL +GD I+++ G + + IV K L R + +
Sbjct: 13 ETSLFAVKITGNSMEPLLYEGDYAIVDTETPPLTGAIVAVGIPGDGIVVKKLAERN-KQL 71
Query: 194 DLMSLNCCYPVDTVEMSDIEW 214
L S+N Y + W
Sbjct: 72 YLESVNPLYEDIPLPEDAKIW 92
>gi|319408510|emb|CBI82163.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 191
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 39/218 (17%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-N 66
KIW + + + + L+ S LAR+ S++ R + S ++ K+L
Sbjct: 2 KIWLS-EAL-QESGLSQSSLARQ---------LSEKMQ---RPIYRS--AVNKMLTGERG 45
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRS 125
++ + + + +K K IPL+ + +GS V P + W V +P
Sbjct: 46 ISMQEGIAIEEITKYPLPRK-KTIPLMGYVGAGSE------VTPYEDGWLEEVEIPPY-- 96
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAK 183
I K + SM P IL + + N + ++ + G K
Sbjct: 97 -------ITKDTYAVKVEGDSMEPFIEDKSILFYSQNMSPNLLLNKKAIVYTQDGRCFVK 149
Query: 184 VLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
++ +L SLN YP ++ + W A I W
Sbjct: 150 IVKQGSKPDLFNLESLNRLYPE--IKDIQLVWAAPIDW 185
>gi|170721919|ref|YP_001749607.1| peptidase S24/S26 domain-containing protein [Pseudomonas putida
W619]
gi|169759922|gb|ACA73238.1| peptidase S24 and S26 domain protein [Pseudomonas putida W619]
Length = 152
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 25/148 (16%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
L +P +P FP+ + + +
Sbjct: 14 TFLGMPTGGTEPLPLYSFHVP---------------AGFPSPAA-DHLEGHISLDEIFDL 57
Query: 131 YAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
A K + SM +Y GDI+I++ + GD ++I + V K L R
Sbjct: 58 RA--PHVYLVKVEGDSMQGAGIY-SGDIVIVDRGREAEHGD-IVIAAVNCEPVCKRLHRR 113
Query: 189 RGRSIDLMSLNCCYPVDTVEMSD--IEW 214
I L S N YP + D + W
Sbjct: 114 DAVVI-LKSENPAYPPRYIMEGDELVIW 140
>gi|303327564|ref|ZP_07358005.1| UmuD protein [Desulfovibrio sp. 3_1_syn3]
gi|302862504|gb|EFL85437.1| UmuD protein [Desulfovibrio sp. 3_1_syn3]
Length = 160
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L+L + + +PL Y P FP+ + H +
Sbjct: 19 LELLGASAPVRPGGREGLPL-YLSPV-------EAGFPSPA---EDDLDRKLDLHEYLVR 67
Query: 133 IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ + SML GD+LI++ +++ R++I G++ K L+ R GR
Sbjct: 68 NEAATFFLRAHGDSMLGAGIHDGDLLIVDRSVEA-GHRRVVIAALDGELTVKRLLRRAGR 126
Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ L N C+ +++++ E++ +W
Sbjct: 127 VL-LAPENPCFSP--IDITEREYVH--IW 150
>gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides
ethenogenes 195]
gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides
ethenogenes 195]
gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides
ethenogenes 195]
gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides
ethenogenes 195]
gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides
ethenogenes 195]
gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides
ethenogenes 195]
Length = 217
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 40/224 (17%)
Query: 13 IDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
+ + ++ +T S LAR++G+D + K + T I + L A I
Sbjct: 11 LKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSA--------TLGIAQKL-ARGLDI 61
Query: 70 CQLLDLPFSDGRTTEKKEKE------------IPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
L + + IP++ + P+G D +
Sbjct: 62 STSALLGEKEESLGNLLSRAQAISRRMDDIEFIPVIGYIPAGYPELVDEE-----AASDY 116
Query: 118 VGVPE--IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
V VP+ +++ +YA++ K + GDI+I++ ++ G ++
Sbjct: 117 VPVPKELLKNASKRVYALRVSGESLK--GDGIE----NGDIIIVDKDSEMFEGKIYAVRT 170
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
++ AK L I L S N Y + +DI + R++
Sbjct: 171 AHNEVTAKHL-YLNNGQIILRSSNGDYKDLVMTNADI--LGRVI 211
>gi|323159200|gb|EFZ45190.1| peptidase S24-like family protein [Escherichia coli E128010]
Length = 103
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+A+ + SM P +++GDI+I++ + G+ ++ K +
Sbjct: 2 ADSDIPETCFAL-------RIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEAT 54
Query: 182 AKVLISRRGRS--IDLMSLNCCYP 203
K +L+ LN YP
Sbjct: 55 FKKYRPLGIGIDDFELIPLNPDYP 78
>gi|218133316|ref|ZP_03462120.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC
43243]
gi|217992189|gb|EEC58193.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC
43243]
Length = 217
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 106 SGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
+ P + + +PE + +A+ K + SM P GD++I+
Sbjct: 98 AAGIPIEATTDIIDTEEIPEEMAKTGDFFAL-------KIKGNSMEPRIMDGDVVIVRKQ 150
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ GD ++ D K L + I+L+S N Y D+
Sbjct: 151 DEAENGDVIIAMVNGDDATCKRL-RKYKDGIELISNNPSYKPMFFSDMDV 199
>gi|85703699|ref|ZP_01034803.1| phage-related protein [Roseovarius sp. 217]
gi|85672627|gb|EAQ27484.1| phage-related protein [Roseovarius sp. 217]
Length = 219
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 41/236 (17%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESIFKILAA 64
I ID ++ + + +R A P S K+ R +G R W S E + ++L
Sbjct: 2 DVILNQIDEALKKKGYSDAKASRLAVGHP-SLIKNFRMKRDGDKRYNWASLERLAEVLD- 59
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-----SGVFPTGNKWNTVG 119
L+L F R G FD G V
Sbjct: 60 --------LELYFGPPREAGTVYTT-------QLGHDD-FDVILRLDARLAAGAG---VE 100
Query: 120 VPEIRSPHNGIYA---------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
E+ + +Q + SM P+ R D+++++
Sbjct: 101 NGEVSYEGALAFCRKWLNEHNISPSQACLMRVSGDSMCPMLRDDDVVMIDQRKTTIRNRH 160
Query: 171 L-LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV---DTVEMSDIEWIARILWAS 222
+ + G K + I L S N YP +M+ I + I+W+S
Sbjct: 161 VYALVDVDGSSRVKRVELVENEMIILSSDNPNYPTETRRGPDMNRIRILGEIVWSS 216
>gi|148257097|ref|YP_001241682.1| putative LexA repressor [Bradyrhizobium sp. BTAi1]
gi|146409270|gb|ABQ37776.1| putative LexA repressor [Bradyrhizobium sp. BTAi1]
Length = 206
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 44/211 (20%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
I+R E+ T GLAR G+ P + + +IL + + +
Sbjct: 7 IERALEKPGKTKGGLARAMGVRPGA--------------------VSEILG--GQRLIKA 44
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
++P T + +P++ G+G + + V + +
Sbjct: 45 AEIPL---ITEYLELNSVPIMG--RVGAGSVIEPE-------YEQVPAEGLG-EVALPFP 91
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNC--GDRLLIKPRTGDIVAKVLIS- 187
I + + SMLP Y GD++++ ++ G+ +++ +TG+ K +
Sbjct: 92 ISEETIAFEVSGDSMLPKYENGDVIVVYREQRHPLSSFYGEEAVVRLKTGERYLKTIERG 151
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ ++L S N P+ V ++WI I
Sbjct: 152 KSSTLVNLKSFN-AKPILGV---KLDWIGEI 178
>gi|192291420|ref|YP_001992025.1| phage repressor [Rhodopseudomonas palustris TIE-1]
gi|192285169|gb|ACF01550.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
Length = 264
Score = 51.9 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIK 174
P + A +++ +TQ SM P GD +I+++ ++ D + I+
Sbjct: 152 EAWHFPARFLREE-LRAPESRVQILETQGDSMAPTILSGDRVIIDTGHRLPSPDGIYAIR 210
Query: 175 PRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
R G IV K VL +I ++S N + + V +I + R+LW
Sbjct: 211 DRFGAIVVKRLQVLRRGEPPTIRVISDNKAHDSEDVGADEIHIVGRVLW 259
>gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8]
gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8]
Length = 228
Score = 51.9 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM P GD +++ V+ G R+ + + V K + G ++
Sbjct: 137 VDTICIIVKGQSMYPKIEDGDRIVVRRQDSVDNG-RVAVVMIGDEAVVKRVNF-DGERLE 194
Query: 195 LMSLNCCYPVDTVEMSDIE 213
L S N YP +E ++
Sbjct: 195 LTSFNPEYPPRIIEGEELA 213
>gi|160916111|ref|ZP_02078318.1| hypothetical protein EUBDOL_02138 [Eubacterium dolichum DSM 3991]
gi|158431835|gb|EDP10124.1| hypothetical protein EUBDOL_02138 [Eubacterium dolichum DSM 3991]
Length = 194
Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 21/164 (12%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
RW S ES I A E + +L ++ + K P+L + +G F +
Sbjct: 33 KRWESGES-KNIPEAKLEKLSELFEIDVPTFLNGQVK----PILGYVKAGYDMFASENLL 87
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCG 168
+ V + D K Q SM GD++ + + V G
Sbjct: 88 ----GYEEV------TKKEAA----QGDYYLKVQGDSMNGSRIHDGDLVYVKTCSDVENG 133
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
D ++ ++ K ++ + ++ LM+ N Y + +DI
Sbjct: 134 DIAVVIIDQSEVTIKKILKQ-EHALVLMATNPAYEPRFFDENDI 176
>gi|257467069|ref|ZP_05631380.1| LexA repressor [Fusobacterium gonidiaformans ATCC 25563]
gi|315918203|ref|ZP_07914443.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
gi|313692078|gb|EFS28913.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 252
Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 21/141 (14%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+E + +E P+ +G G + P + +P +R GIY
Sbjct: 93 SEFEMREYPIYDSVSAGFG------IIPDAAPIEYISLPILRGEIVGIY----------V 136
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P GDI+++ I+V G+ + + TG+ K L + G I L S N
Sbjct: 137 VGNSMEPSISDGDIILVKKDIEVQVGEIGVFVNQVTGEGFVKRLKYKNGCYI-LKSDNPM 195
Query: 202 YPVDTVEMSDIEW---IARIL 219
Y ++ DI +ARI+
Sbjct: 196 YTDVEIQSDDIICCGKVARII 216
>gi|88808444|ref|ZP_01123954.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805]
gi|88787432|gb|EAR18589.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805]
Length = 147
Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
LP ++++ +PL + FP+ + V V ++ +
Sbjct: 7 FGQLPQP--LCSQRRPLHLPLACERVA--------AGFPSPAD-DYVEV--GIDLNDQLI 53
Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM GD+L+++ ++ G R+++ G K L RG
Sbjct: 54 RHPSSTFFLRVSGDSMTGAGIHDGDLLVVDRSLDPRPG-RVVVAVLDGGFTLKRLARHRG 112
Query: 191 RSIDLMSLNCCYPVDTVE 208
R + L + N YP +E
Sbjct: 113 R-LRLEAANPDYPPLELE 129
>gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
Length = 224
Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 20/165 (12%)
Query: 54 STESIFKILAATNETICQLLDLPFS--DGRTTEKKEKEIPLLYFPPSG---SGGFFDSGV 108
ST SI ++ A T +L S D +K IP+L + +G S D
Sbjct: 47 STGSILELATALGVTAEELKKGIVSKFDNNVEPITKKLIPVLSWVQAGTMTSVEAIDP-- 104
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--N 166
NK N P +G + + S P Y +GD +++N QV
Sbjct: 105 ----NKINEWLPPLSADDPDGCF-------YLRVVGVSNSPRYEEGDYILVNPNYQVCDL 153
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D L++ D K L+ + L +LN + + +E D
Sbjct: 154 IADDLIVVRNNSDATFKKLVIESDQRKYLQALNPNFHPNIIEFED 198
>gi|322832500|ref|YP_004212527.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602]
gi|321167701|gb|ADW73400.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602]
Length = 222
Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 57/221 (25%)
Query: 17 AERHNLTPSGLARKAGL---DPTSF------NKSKRFG-------------IEGRNRWPS 54
A + + G + AGL +PT N +K+ G +G W
Sbjct: 12 ARKLRDSAGGNSSFAGLIEREPTQVSRVIGKNPTKKIGDDLARHIEKCFDLPDG---W-- 66
Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ K ATN T D TE K +P++ + +G+
Sbjct: 67 ---LDKEHQATNIT-------SAPDVTDTELTIKMVPVISWVQAGA-------------- 102
Query: 115 WNTVGVPEIRSPHNGIYAIQTQ----DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
W +G E+ + Y + SM+ YR GD++ ++ + GD
Sbjct: 103 WTEIGYSEVDLSLSETYPCPVPCGSMTYILRVIGDSMIDEYRPGDMIFVDPEVAPVHGDD 162
Query: 171 LL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
++ + +G+ K L+ S L +LN +P +++
Sbjct: 163 VIALLLDSGETTFKRLVE-DAGSKYLKALNKGWPEQYIKID 202
>gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3]
gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI
gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3
gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3]
Length = 223
Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 38/225 (16%)
Query: 17 AERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
A +H LT + LA++ GLD TS + ++ +G T I ++ +A + L
Sbjct: 10 ARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQG------TSYIAQLASACGVSALWLAAG 63
Query: 76 PFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPE 122
G +EK IP G+F+ W +
Sbjct: 64 HGEMNSNKEALPGAPSEKDYALIPQYTARGECGDGYFNDHVETTEGLVFKRDW----LKR 119
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181
+ S ++ I SM P +GD+++ +++ ++ +I+ G +
Sbjct: 120 VNSKPENLFVI-------YADGDSMEPYIFEGDVVLFDTSKTDPQDKQVYVIRRPDGGVS 172
Query: 182 AKVLISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARILW 220
K L + + + S N YP + S ++ I R++W
Sbjct: 173 IKRLNQQLTGAWLIRSDNPDKSAYPDEMASESSVHELPIIGRVIW 217
>gi|290580238|ref|YP_003484630.1| putative transcriptional regulator [Streptococcus mutans NN2025]
gi|254997137|dbj|BAH87738.1| putative transcriptional regulator [Streptococcus mutans NN2025]
Length = 297
Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
I D SM PL+ GD++ + ++ G +++ + K L + +
Sbjct: 211 IPEHDIALIVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVNN-EAYVKKLYRKN-KE 268
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I L+SLN Y ++ D
Sbjct: 269 IRLISLNPDYDDIILKEDD 287
>gi|24379803|ref|NP_721758.1| putative transcriptional regulator [Streptococcus mutans UA159]
gi|24377771|gb|AAN59064.1|AE014973_4 putative transcriptional regulator [Streptococcus mutans UA159]
Length = 284
Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
I D SM PL+ GD++ + ++ G +++ + K L + +
Sbjct: 198 IPEHDIALIVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVNN-EAYVKKLYRKN-KE 255
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I L+SLN Y ++ D
Sbjct: 256 IRLISLNPDYDDIILKEDD 274
>gi|148548161|ref|YP_001268263.1| putative prophage repressor [Pseudomonas putida F1]
gi|148512219|gb|ABQ79079.1| putative prophage repressor [Pseudomonas putida F1]
Length = 158
Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 47/148 (31%), Gaps = 25/148 (16%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
L +P +P FP+ + + +
Sbjct: 20 TFLGVPTGGTEPLPLYSFHVP---------------AGFPSPAA-DHLESHISLDELFDL 63
Query: 131 YAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
A K + SM +Y GDI+I++ + GD ++I + V K L R
Sbjct: 64 RA--PHVYLVKVEGDSMQGAGIY-SGDIVIVDRGREAEHGD-IVIAAVNSEPVCKRLHRR 119
Query: 189 RGRSIDLMSLNCCYPVDTVEMSD--IEW 214
G I L S N YP + D + W
Sbjct: 120 DGVVI-LKSENTAYPPRYIMEGDDLVVW 146
>gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176]
gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176]
Length = 209
Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 32/180 (17%)
Query: 43 RFGIEGRNRWPSTES-IFKILAATNETICQLLDLPFSDGRTTEKKEKE-----IPLLYFP 96
R + P T + + +IL T + + L P IP++
Sbjct: 38 RSTPD-----PQTVARLAEILDTTADVLLGLQKSPSEAPAVGRYAFSRYAECLIPVVGTV 92
Query: 97 PSGSGG--FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
+G G F + ++ P N Y + SM P G
Sbjct: 93 RAGYGALAFEEDYGK---------EYASVKDPQNYFY--------LVVKGDSMEPRISDG 135
Query: 155 DILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
D+ +++ ++ GD +L+ G+ K I +RG S+ L N Y ++ +++
Sbjct: 136 DLALVHRQNTLDNGDLGVLVYGADGEGTLKKYI-QRGNSVVLHPFNPAYEELVIKGEELD 194
>gi|332853630|ref|ZP_08434860.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
gi|332870803|ref|ZP_08439453.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
gi|332728454|gb|EGJ59828.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
gi|332732013|gb|EGJ63290.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
Length = 227
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 29/140 (20%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-----AIQTQDTRHKTQD 144
IP+L F +G W+ V + +PH+ Y + Q
Sbjct: 96 IPILDFVQAGF--------------WHEVVY-DGTTPHSYTYTDYISSNPEAIFSVIVQG 140
Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR----GRSI-DLMSLN 199
SM P +++GD+LI++++I G ++ + + + K GR I +L+ LN
Sbjct: 141 NSMEPDFKEGDMLIVDASIAPKPGSYVIAQNGSHEATFKKYRVLSHDEYGRDIFELIPLN 200
Query: 200 CCYPVDTVEMSDIEWIARIL 219
+P+ + +I RI+
Sbjct: 201 KDFPILSSITHEI----RII 216
>gi|33770547|ref|NP_892084.1| prophage repressor [Yersinia phage PY54]
gi|33636130|emb|CAD91799.1| prophage repressor [Yersinia phage PY54]
Length = 215
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G NT+ +IR P +Y + K + + LP Y +G++LI + G+ +
Sbjct: 103 GQGVNTLEFVDIRVPARRLYGL-------KVSNDASLPRYTEGEVLIADPDATPITGEEV 155
Query: 172 LIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWA 221
++ + G + V KV S+R + L S + + ++ +I I I++
Sbjct: 156 VVITKNGDEPVIKVFASKRDNQVLLESADRKQ--RVIRDLDEIIVIHPIIFV 205
>gi|220925622|ref|YP_002500924.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
gi|219950229|gb|ACL60621.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
Length = 230
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
+ IP++ G GG +G V P + Y+ +
Sbjct: 99 PSGRLIPVVGRKRVGEGGAIVIDGTISGR----VECPGNLVDVDNAYSTE-------VVG 147
Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLL--IKPRTGDI--VAKVLISRRGRSIDLMSLNC 200
MLP Y G+++ ++ + G + ++ +GD+ + K + + + LN
Sbjct: 148 DCMLPRYEPGELVFIHPTRPYHAGSYVFLNVRDASGDLIGLVKRYVRTTSEHVIVEQLNP 207
Query: 201 CYPVDTVEMSDIEWIARIL 219
T + +E + I+
Sbjct: 208 PK-TLTFDRRSVEAVHLIV 225
>gi|289166201|ref|YP_003456339.1| phage repressor [Legionella longbeachae NSW150]
gi|288859374|emb|CBJ13310.1| putative phage repressor [Legionella longbeachae NSW150]
Length = 229
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 17/206 (8%)
Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGR-NRWPS-TES--IFKILAATNETICQLLDLPFSD 79
GL RKA + T K R R +R P TE + +L + + L D
Sbjct: 19 AKGLTRKALAELTGELKISRINNYERGDRTPGPTEIKLLADVLEVSASYLMCLTDNREGK 78
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGIYAIQTQDT 138
+ IP+L + + D+ + +T V I +I
Sbjct: 79 ITKSPGMGALIPVLDYKQAAD---LDNCIQKIKEDVDTRVEF--IPVSSVVSDSIGKNAF 133
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA---KVL-ISRRGRSI 193
+ +D SM+P +R DILIL+ GD ++ + +++ K L S+ +
Sbjct: 134 ALQIKDESMVPEFRINDILILDPETSPKPGDFVVALIEGEQEVIIRKYKQLSASKEAQQF 193
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
+L++LN + V S+++ A+I+
Sbjct: 194 ELIALNEDWADIRVGFSEMK--AQII 217
>gi|258405026|ref|YP_003197768.1| Peptidase S24, S26A and S26B, conserved region [Desulfohalobium
retbaense DSM 5692]
gi|257797253|gb|ACV68190.1| Peptidase S24, S26A and S26B, conserved region [Desulfohalobium
retbaense DSM 5692]
Length = 148
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + P H + + + + SM GDIL+++ ++
Sbjct: 32 PAGFPSPAD-DHLDRP--LDLHEYLISNEAATFMVRVSGDSMSGAGILDGDILVVDRSLS 88
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEW 214
G +++ G++ K L R + L + + YP TV + W
Sbjct: 89 PRTG-HIVVAVLDGELTVKRLTRRGEQW-RLEAAHDGYPPLTVRPEQEFLVW 138
>gi|332974608|gb|EGK11526.1| LexA family repressor/S24 family protease [Psychrobacter sp.
1501(2011)]
Length = 212
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 35/160 (21%)
Query: 58 IFKILAATNETICQLL-DLPFSDGRT--TEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGN 113
+ K+ +I L+ +P D + +P+L + +G +FD +
Sbjct: 51 LSKVF---GCSIGYLVDGIPDGDNFKILPMDNVRRVPVLNYVQAGEFCEYFDDA---IAD 104
Query: 114 KWNTV--GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ + P + SM P + GD+++++ Q + GD +
Sbjct: 105 MFEVIIGDYP-------------PHVHWVIIEGLSMTPDFNPGDLILVDPDTQPSPGDYV 151
Query: 172 LIKPRTGDIVAKVLISRRGRSI--------DLMSLNCCYP 203
+ K + G+ A R R +L+ LN +P
Sbjct: 152 VAK-KAGE-NAVTFKKWRPRGFDDDGIEYCELVPLNPDFP 189
>gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
U0317]
gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
U0317]
Length = 234
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSI 193
D SM P+ R G + + V G+ +++ + K + ++I
Sbjct: 148 AADFAVPIIGDSMEPVIRNGQFVFVKEQPDVEDGEIAIVELGGDGVTCKEIYKDYENQTI 207
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L S+N Y V I I +++
Sbjct: 208 ILRSINDLYEDRIVSPEQIRIIGKVV 233
>gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont]
Length = 211
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 20/162 (12%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-N 116
+ ++L + I PF+ + +PL+ + W N
Sbjct: 54 LAELLQCSAAWIIDGDGQPFASTHASPA-LTAVPLVTLVQAAD--------------WLN 98
Query: 117 TVGVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
+ + +Y+ + +D +M P YR GD LI + GD +++
Sbjct: 99 KQRLQWQQQAVRFLYSDKPLSDSALAVTLEDDAMNPAYRAGDRLIFDPQHVPQPGD-VVL 157
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
+ +++ + L LN +PV + S +E I
Sbjct: 158 ARVDEVAMVRIIRMHDEQIFSLRPLNEDFPVQQSQKSALELI 199
>gi|313900347|ref|ZP_07833841.1| peptidase S24-like protein [Clostridium sp. HGF2]
gi|312954896|gb|EFR36570.1| peptidase S24-like protein [Clostridium sp. HGF2]
Length = 194
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
RW S ES + A + + +L + K P+L + +G F + +
Sbjct: 33 KRWESGES-SNVPQARLDRLSELFGIDVPACLQGHVK----PILGYVKAGYDLFANENLL 87
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCG 168
+ V D + Q SM GD++ + S V G
Sbjct: 88 ----GYEEV----------SAREAAQGDYYLRVQGDSMTGSRIYDGDLVYVKSCSDVENG 133
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
D ++ ++ K ++ + ++ LM+ N +IE
Sbjct: 134 DIAVVLLNHSEVTIKKILKK-EHTVILMATNPVVEPRVFTQEEIE 177
>gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 216
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 22/216 (10%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
I + ++ +T + LAR+ P+ ++ +R + PS + KI +I L
Sbjct: 6 IRTLRKKMRMTATELARRVKTSPSHISEIERG-----EKTPSLNLLVKIAKELQTSIDYL 60
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGV-FPTGNKWNTVGVPEIRSPHNGI 130
L E+ LL +G D +P + VPE G
Sbjct: 61 TGL--EGFSKKALNVTEVALLDQASVTAAGKALDQTGVYPVVE--EMIYVPEDALGPVG- 115
Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ SM+ I+++N +V GD + + + K + ++
Sbjct: 116 ---DIPPFAVRISGESMIGAGITDNSIVVINPNAEVGQGD-VALVSIGNEWTVKYIYTKA 171
Query: 190 GRSIDLMSLNCCYPVDTVEMSD-----IEWIARILW 220
S++L N Y + D ++ I +++W
Sbjct: 172 DGSLELRPANPSYSPIFFDKEDLISGLVKVIGKVVW 207
>gi|259418034|ref|ZP_05741953.1| putative phage repressor [Silicibacter sp. TrichCH4B]
gi|259346940|gb|EEW58754.1| putative phage repressor [Silicibacter sp. TrichCH4B]
Length = 238
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 33/221 (14%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
EA++ L+ LA KAG+ S+ + K+ +G+ + + E +I AA ++
Sbjct: 36 EALNGAMSASGLSMRKLAEKAGV---SYEQLKKI-NQGKTQSTNAEDALRIAAALGISLE 91
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ F T I + +G+ FD+ + G+ + P + +G
Sbjct: 92 SFMAGEFEGTPT-------IAIAGKVGAGASVPVFDA--YAKGDGPQVICPPGLS--PSG 140
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-----GDRLLIKPRTGDIVAKV 184
+ A++ + SM P+Y GD+L + + G R + + G K
Sbjct: 141 VVAVE-------VEGDSMEPVYSAGDLLFYSRNGHDSVPSDVIGHRCVCEDEEGMGWVKQ 193
Query: 185 LIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL--WAS 222
+ + L+SLN + + ++W AR+ W S
Sbjct: 194 VKAGDEPGLFHLISLNPGANN--IWNTRLKWAARVRLHWPS 232
>gi|331685806|ref|ZP_08386387.1| transcriptional regulator, Cro/CI family [Escherichia coli H299]
gi|324014328|gb|EGB83547.1| helix-turn-helix protein [Escherichia coli MS 60-1]
gi|331077003|gb|EGI48220.1| transcriptional regulator, Cro/CI family [Escherichia coli H299]
Length = 228
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 28/223 (12%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT----------NE 67
E+ ++ + LA K GL S K + + + R + I K+L + N
Sbjct: 13 EKAGMSQAQLAEKIGLSQQSVAKIENGETQ-QPR--KIKEIAKVLGVSQKWLQLGIEDNA 69
Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ L+ IP+L S G + + W P R
Sbjct: 70 SFPDLVVKEAESTALDPDIFANIPVLDVELSAGNGCLAE-IVESTVDW----FPLRRIDL 124
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILI--LNSAIQVNCGDRLLIKPRTGDIV-AKV 184
+ K S+LP+ GD + ++ + + GD L R G ++ K+
Sbjct: 125 RKAGVCVSNAKIVKIWGNSLLPVLNNGDFVAVDVSQTVPIRDGD--LYAIRDGVLLRVKI 182
Query: 185 LISRRGRSIDLMSLN-CCYPVDTV----EMSDIEWIARILWAS 222
LI+ + L S N YP + + S I I R+ W+S
Sbjct: 183 LINLPDGGLILRSFNKDEYPDEILTFEDRRSRIHVIGRVFWSS 225
>gi|290510869|ref|ZP_06550239.1| lambdoid prophage e14 repressor protein C2 [Klebsiella sp. 1_1_55]
gi|289777585|gb|EFD85583.1| lambdoid prophage e14 repressor protein C2 [Klebsiella sp. 1_1_55]
Length = 219
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 12/132 (9%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
D T + +P++ + +G+ + + + +T P Y +
Sbjct: 79 SPDVSDTNRNFVMVPVISWVQAGA---WTEFGYAEVDLNSTENYPCPVPCGPMTYIL--- 132
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDL 195
+ SM+ YR GD++ ++ + GD ++ G+ K LI G+ L
Sbjct: 133 ----RVIGDSMIDEYRPGDMIFVDPEVPAVHGDDVIALMHDSGETTFKRLIEDAGQRY-L 187
Query: 196 MSLNCCYPVDTV 207
+LN +P +
Sbjct: 188 KALNTNWPEPYI 199
>gi|33600663|ref|NP_888223.1| putative phage repressor [Bordetella bronchiseptica RB50]
gi|33568263|emb|CAE32175.1| putative phage repressor [Bordetella bronchiseptica RB50]
Length = 227
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 24/132 (18%)
Query: 81 RTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+ +PL+ + +G G F +G + S H +A++
Sbjct: 86 APAAAGSRRVPLINYVQAGELTEIGAAF------SGEAVEYLLTDMNLSQH--AFALE-- 135
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGR 191
SM P ++ GD +I++ I GD ++ + + K R
Sbjct: 136 -----ITGLSMYPDFKPGDRIIVDQEICPQPGDFVVARNGGYEATFKKYRPRGLDANGND 190
Query: 192 SIDLMSLNCCYP 203
+L+ LN YP
Sbjct: 191 VFELVPLNDDYP 202
>gi|144897419|emb|CAM74283.1| SOS mutagenesis protein UmuD [Magnetospirillum gryphiswaldense
MSR-1]
Length = 192
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P G +P P S FP+ + + H +
Sbjct: 45 PLPPGTRLASSRAFVPADGAAPIYSALV--PAGFPSPAD-DHLE--GKLDLHELMVKRPA 99
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM GD+L+++ ++Q GD +++ G + K L + +
Sbjct: 100 ATFFCRADGDSMTGAGIHSGDLLVVDRSVQPQDGD-IVVATLDGGLTVKTL-RKTTEGWE 157
Query: 195 LMSLNCCYPVDTVEMSD 211
L N YP + D
Sbjct: 158 LAPANPDYPSFPLNQED 174
>gi|210621011|ref|ZP_03292396.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275]
gi|210154995|gb|EEA86001.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275]
Length = 214
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 22/161 (13%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFP 110
P E + K+ + + ++ LL + K + + P+L +G+GG
Sbjct: 51 PPLEILQKLASLYSVSLDYLLGNDDVRLKNEIKIDNVVKLPVLGSVRAGTGG-------- 102
Query: 111 TGNKWNTVGVPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
W V H + + + K + SM P +GD+ ++ V
Sbjct: 103 ----WAIEEVIG----HEYAFNLCADTSDYYYLKVKGDSMEPRISEGDLALVKKQSDVES 154
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD ++ + V K +I R ++L S N YPV
Sbjct: 155 GDLAIVLINGDEGVIKKVIKRD-DCLELHSFNAYYPVRVFS 194
>gi|221067974|ref|ZP_03544079.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
gi|221068037|ref|ZP_03544142.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
gi|220712997|gb|EED68365.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
gi|220713060|gb|EED68428.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
Length = 153
Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
+ P++ +G P G+ + V + ++
Sbjct: 15 AGLRAYPVISRIQAGKVKEITCPYEP-GDGY-AVEF-GDDDASEWAFFLE-------IDG 64
Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR----RGRSI-DLMSLN 199
SMLP + GD + ++ + GD + K + + K R G+ I +L+ LN
Sbjct: 65 DSMLPEFNPGDRVRIDPEVTPRPGDFVAAKNSSEESTFKKYRVRGIDLTGKEIFELVPLN 124
Query: 200 CCYPV 204
YPV
Sbjct: 125 DNYPV 129
>gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073]
gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718]
gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073]
gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718]
Length = 208
Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPT 111
P E++ K+ N +I +L +G+ + +P++ + +G + F
Sbjct: 43 PGGEALSKLAKFFNTSIDYILYGAEFEGKLV-TNMRRVPVISWVQAGQFTECRAAEVFSE 101
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVN 166
+KW + + +A++ + SM LP +G +I++ +
Sbjct: 102 VDKWVDTSL----KVGDNSFALE-------VKGDSMTNPNGLPTIPEGATVIVDPDAEPR 150
Query: 167 CGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPV 204
G ++ + + K L+ + L+ LN YP
Sbjct: 151 HGKIVIARLDGTNEATVKKLVIDGPQKF-LVPLNPRYPN 188
>gi|282851280|ref|ZP_06260645.1| putative repressor LexA [Lactobacillus gasseri 224-1]
gi|282557248|gb|EFB62845.1| putative repressor LexA [Lactobacillus gasseri 224-1]
Length = 202
Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 39/216 (18%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS----FNKSKRFGIEGRNRWPSTESI 58
S ++I + ++++ E +++ S LAR+ G+ + FN ++ F I NR P+
Sbjct: 1 MRSSEEIIDYLNQLREEQDVSISELARRVGMAKSGVSRYFNHTREFPI---NRAPA---F 54
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-T 117
K L + LL L + K + +PLL G+ P + N
Sbjct: 55 AKAL---HIKTEDLLGL----EPINQNKPRMVPLLGTIAMGA---------PITAEQNIE 98
Query: 118 VGVPE---IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+PE R + ++A+ + Q SM PL G I I+ V G+ +
Sbjct: 99 KYIPEYMMDRYADDTLFAL-------RCQGDSMYPLIPNGAIAIIRQQADVEDGEVAAVL 151
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
+ KVL G+++ L N Y ++
Sbjct: 152 INGEATLKKVLH--VGKTVVLRPANPDYKDIILDKD 185
>gi|254497251|ref|ZP_05110059.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12]
gi|254353479|gb|EET12206.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12]
Length = 224
Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 39/212 (18%)
Query: 24 PSGLARKA------GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
GL RKA L P+ N +R R P E I ++ A + L+ L
Sbjct: 17 AKGLTRKALSELTDDLKPSRINNWERGI-----RTPGPEEIKQLAEALDVAPGYLMCLTD 71
Query: 78 SDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIRSPHNGIY 131
E IPLL + + + K + + P++ +
Sbjct: 72 DKQVKQEFPWLGALIPLLNAQQACDPKQYIQAIK-EDRKSDAISFIPLSPDLTAQ----- 125
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ QD SM P + GDILI++ + G ++I + R
Sbjct: 126 -LGNNSFALCIQDDSMTPELKIGDILIVDPDQIIRPGGIVVIHLQDS-------KEVTVR 177
Query: 192 SI-DLMSLNCCYPVDTVEMSDIEWIARILWAS 222
L + N + + +++ WAS
Sbjct: 178 RYKQLSAGNPVKEYELIAVNEN-------WAS 202
>gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205]
gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205]
Length = 224
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 22/166 (13%)
Query: 54 STESIFKILAATNETICQLLDLPFS--DGRTTEKKEKEIPLLYFPPSG---SGGFFDSGV 108
ST SI ++ A T +L S D K IP+L + +G S D
Sbjct: 47 STGSILELANALGVTAEELKKGVISTLDNNVAPVSSKLIPVLSWVQAGTMTSVEAIDP-- 104
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--- 165
N P +G + + S P Y GD +++N + QV
Sbjct: 105 ----KNINEWLPPLSVDDPDGCF-------YLRVVGVSNYPTYADGDYILVNPSYQVCDL 153
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D ++++ + D K L+ L +LN + + +E +
Sbjct: 154 ISEDLVVVRSNS-DATFKKLVIESDERKYLQALNPNFQPNIIEFEE 198
>gi|260463034|ref|ZP_05811237.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
gi|259031155|gb|EEW32428.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
Length = 234
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 59/188 (31%), Gaps = 34/188 (18%)
Query: 53 PSTESIFKILA-------ATNETICQLL--------DLPFSDGRTTEKKEKEIPLLYFPP 97
P TE++ K A A + L +D +I LL
Sbjct: 52 PKTENLLKTAAFLRVDPVALGQGQVVFLDDAGPVADAEIVTDAGPLPAGPMDIELLGAAV 111
Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
G G F G V P + ++A+ SM+P Y G++L
Sbjct: 112 GGDDGDFTFNGEVAG----YVQRPPGIAHLRKVFAL-------HVLSDSMVPRYEPGEML 160
Query: 158 ILNSAIQVNCGDRLLIKP------RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
V GD ++I+ R G K L+ R + + N T
Sbjct: 161 YCGGRDAV-PGDHVVIETFPEENERNGKAFIKKLVKRTAGELVVEQYNPPK-TLTFNRYA 218
Query: 212 IEWIARIL 219
I+ + R++
Sbjct: 219 IKHVWRVI 226
>gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM
17241]
gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM
17241]
Length = 205
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 34/207 (16%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW------PSTESIFKILAATN 66
+ + + ++ LA++ G + +W P ++ I
Sbjct: 12 LKALRKECGISQRALAQRLG-----------VSQQAVAKWEAASSTPGPNALATIADVLG 60
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+ LL + + +P+L +G G + + T ++R P
Sbjct: 61 VSSDYLLGRERDFQDGAQDTAR-LPVLGTVKAGYGAYAFEEDYGTAPA-------QVRDP 112
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ Y + SM P GD+ +++ V G+ ++ + K +I
Sbjct: 113 RDYFY--------LIVRGDSMEPRIHSGDLALVHRQPDVESGELAVVLVAGEEGTLKRVI 164
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+ G I L N Y ++E
Sbjct: 165 KKEGAVI-LQPFNQAYQPQVFIGEELE 190
>gi|91200019|emb|CAJ73061.1| similar to transcriptional repressor [Candidatus Kuenenia
stuttgartiensis]
Length = 213
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSIDLM 196
+D SM P + GD++I++ V D L L++ K + G S+ L+
Sbjct: 120 YLFHVKDDSMEPTLKNGDVVIVDKKNNVLDRDGLYLLRTEGAAAFIKRVQRLPGGSLHLL 179
Query: 197 SLNCCYPV-----DTVEMSDIEWIARILWA 221
N Y +E DI + R++W+
Sbjct: 180 CDNATYKPIEAKTAQIENGDIVIVGRVVWS 209
>gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B]
Length = 208
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPT 111
P E++ K+ N +I +L +G+ + +P++ + +G + F
Sbjct: 43 PGGEALSKLAKFFNTSIDYILYGAEFEGKLV-TNMRRVPVISWVQAGQFTECRAAEVFSE 101
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVN 166
+KW + + +A++ + SM LP +G +I++ +
Sbjct: 102 VDKWVDTSL----KIGDNSFALE-------VKGDSMTNPNGLPTIPEGATVIVDPDAEPR 150
Query: 167 CGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPV 204
G ++ + + K L+ + L+ LN YP
Sbjct: 151 HGKIVIARLDGTNEATVKKLVIDGPQKF-LVPLNPRYPN 188
>gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469]
gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469]
Length = 208
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPT 111
P E++ K+ N +I +L +G+ + +P++ + +G + F
Sbjct: 43 PGGEALSKLAKFFNTSIDYILYGAEFEGKLV-TNMRRVPVISWVQAGQFTECRAAEVFSE 101
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVN 166
+KW + + +A++ + SM LP +G +I++ +
Sbjct: 102 VDKWVDTSL----KIGDNSFALE-------VKGDSMTNPNGLPTIPEGATVIVDPDAEPR 150
Query: 167 CGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPV 204
G ++ + + K L+ + L+ LN YP
Sbjct: 151 HGKIVIARLDGTNEATVKKLVIDGPQKF-LVPLNPRYPN 188
>gi|27381246|ref|NP_772775.1| hypothetical protein blr6135 [Bradyrhizobium japonicum USDA 110]
gi|27354413|dbj|BAC51400.1| blr6135 [Bradyrhizobium japonicum USDA 110]
Length = 202
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 21/177 (11%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTE---------KKEKEIPLLYFPPSGSGGFFDSGV 108
I + L T ++ L K + IP++ +
Sbjct: 7 IERGLEKTGKSKGGLAAAMGVRPGAVSEILGGERLVKASEIIPIMEYLELNLAPIMGRVG 66
Query: 109 FPT--GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQ 164
+ V PE + I + + SMLP Y GD++++ +
Sbjct: 67 AGAVIEPDYEQVP-PEGLGDIALPFPIMEETIAFEIVGDSMLPKYESGDVIVVYKDQRHP 125
Query: 165 VNC--GDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
++ G+ +++ +TG+ K + + ++L S N P+ V ++W+ I
Sbjct: 126 LSSFYGEEAVVRLKTGERYLKTIERGKSPSVVNLNSFN-AKPIVGV---KLDWVGEI 178
>gi|83311166|ref|YP_421430.1| SOS-response transcriptional repressors [Magnetospirillum
magneticum AMB-1]
gi|82946007|dbj|BAE50871.1| SOS-response transcriptional repressors [Magnetospirillum
magneticum AMB-1]
Length = 156
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P G PL P S + FP+ + H +
Sbjct: 9 PLPPGTCQASSRGFAPLEATAPIYSALV--AAGFPSPA---DDHLEGKLDLHELMVKRPA 63
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM GD+L+++ ++Q + GD +++ G + K L + +
Sbjct: 64 ATFFCRADGDSMTGAGIHSGDLLVVDRSVQPHDGD-IVVATLDGGLTVKTL-RKTEDGWE 121
Query: 195 LMSLNCCYPVDTVEMSD 211
L S N YP +V+ D
Sbjct: 122 LASANPDYPSFSVDPDD 138
>gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM
17244]
gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM
17244]
Length = 197
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 24/201 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+ + + H +T LA LD +S K + G PS +++ KI A N +I L
Sbjct: 6 LRSLRKEHGMTQVDLANALDLDKSSIAK---YESAGII--PSVDTLQKISALFNVSIDYL 60
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L+ PF D + ++ +G G + +G+ + + +N
Sbjct: 61 LNAPFGD----INNVMNVEIIGTVVAGRDGI---------ATYEFLGISQAININNK--- 104
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ K + SM P +GD+ ++ ++ GD ++ + V K + + S
Sbjct: 105 --DEYKYLKVRGDSMAPQILEGDLALVRLQPDIDSGDLAVVIIGGEEGVIKKVQ-KTDNS 161
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
I L+S N Y D+E
Sbjct: 162 ISLISFNPMYDTRVFIGKDME 182
>gi|145306753|ref|YP_001144417.1| peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
MSR-1]
gi|144901519|emb|CAM78241.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
MSR-1]
Length = 192
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P G +P P S FP+ + + H +
Sbjct: 45 PLPPGTRLASSRAFVPADGAAPIYSALV--PAGFPSPAD-DHLE--GKLDLHELMVKRPA 99
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM GD+L+++ ++Q GD +++ G + K L + +
Sbjct: 100 ATFFCRADGDSMTGAGIHSGDLLVVDRSVQPQDGD-IVVATLDGGLTVKTL-RKTTEGWE 157
Query: 195 LMSLNCCYPVDTVEMSD 211
L N YP + D
Sbjct: 158 LAPANPDYPSFPLNQED 174
>gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505]
gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505]
Length = 206
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 24/193 (12%)
Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL--LDLPFS 78
LT + LA AG+ S K + + R + +++ L T E Q + S
Sbjct: 15 GLTQANLAELAGIIQQSLQKIESGSTKN-PR--NLKALADALDCTPE-FLQFGIAESINS 70
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD- 137
+ + +PL+ + +G+ W+ + + +
Sbjct: 71 NVSPGPDIKSTVPLISWVQAGA--------------WSEINEIRECDAERFMCPVNASSK 116
Query: 138 -TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLISRRGRSIDL 195
+ Q SM P + +GD++ ++ + G ++ + + K LI G L
Sbjct: 117 TFALRVQGVSMEPKFYEGDLIFVDPEAECIHGSYVVARLDDDNHATFKQLIIESGHKF-L 175
Query: 196 MSLNCCYPVDTVE 208
+ N +P +
Sbjct: 176 KAANPNWPEQLIP 188
>gi|182678381|ref|YP_001832527.1| putative phage repressor [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634264|gb|ACB95038.1| putative phage repressor [Beijerinckia indica subsp. indica ATCC
9039]
Length = 225
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLI 173
P Y + + SM P Y GDI+I Q G +
Sbjct: 100 EQEPPGGFDEVQIPYPAPSGAVAFEIVGDSMWPRYDPGDIVICWKVAQTRTEADGWEAAV 159
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
+ G K + DL+S N + IEW
Sbjct: 160 RLTDGRRYLKTIRRVSKDRFDLISHNASP----IHNVQIEW 196
>gi|149195301|ref|ZP_01872389.1| hypothetical protein CMTB2_00374 [Caminibacter mediatlanticus TB-2]
gi|149134565|gb|EDM23053.1| hypothetical protein CMTB2_00374 [Caminibacter mediatlanticus TB-2]
Length = 206
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
I SM P + G I+ ++ I ++ G +I G + K + +
Sbjct: 117 IDKNLDAIHVVGDSMEPTIKDGSIIFIDRNIPLSSGGIYVISTNAG-VFVKRINIKSSGE 175
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I+L+S N YP++ V++ +I+ I +++
Sbjct: 176 IELISDNKIYPIEKVKLEEIKVIGKVV 202
>gi|60099615|gb|AAX12919.1| transcriptional regulator [Escherichia blattae DSM 4481]
Length = 246
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 36/225 (16%)
Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA------TNETICQ--LLD 74
+ + A AG+ P+ N R G P ++ K T + + L
Sbjct: 30 SNNAFAVAAGISPSGLN---RLLEGGYPTLPILIALAKAGGVSVEWLSTGGDLVESKLPA 86
Query: 75 LPFSD---GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
L D T+ K + L F S + WN P +
Sbjct: 87 LVQGDVVGATVTDVKGNNVDLEEFVFVPRYNVCASAGY---GSWNDDETPMFTVSFRRFW 143
Query: 132 ------AIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKV 184
A Q + SM + DI+++N A + G + + G ++ K
Sbjct: 144 VTNHLKADPAQLSVISVYGDSMEGVLNDKDIILINHADKEPREG--IYVLRIDGQLIVKR 201
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD----------IEWIARIL 219
+ G + + S N Y ++ ++D + W R++
Sbjct: 202 VQRLPGSLLRITSTNPAYEPFSINLNDVPSDFDIVGKVVWYGRVV 246
>gi|288959078|ref|YP_003449419.1| transcriptional regulator [Azospirillum sp. B510]
gi|288911386|dbj|BAI72875.1| transcriptional regulator [Azospirillum sp. B510]
Length = 222
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
L + + +P+ G F P + + P+ YA
Sbjct: 84 LLRTTPAQQAQAAASMPVRAAARGGGDQEMFLEDG-PI----DWIARPDYLKNARDPYA- 137
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM+P +R +L +N G +++ R ++ K + R S+
Sbjct: 138 ------MYVVGESMMPRFRPAQLLHVNPHKPPAPGAGVVVVKRNKAVLVKEFVRRASDSV 191
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L +V + +++ + ++
Sbjct: 192 ILREYRPAEREFSVALEELDTLHTVV 217
>gi|283852604|ref|ZP_06369871.1| putative phage repressor [Desulfovibrio sp. FW1012B]
gi|283572052|gb|EFC20045.1| putative phage repressor [Desulfovibrio sp. FW1012B]
Length = 241
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 55/248 (22%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI--- 69
I + +R+ S L R G+ ++ N+ + P + + KIL A +
Sbjct: 7 IQALLDRYRGNQSELVRLTGVPQSTLNRLFKGTGS-----PKADILAKILDAVGAKLVLP 61
Query: 70 --------------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+++ + +PL+ +G G D + W
Sbjct: 62 GERPETTRDVCWVDAKIVSAGDGQPLPPSENYFAVPLVGEAGAGPGVMSDDVI----KSW 117
Query: 116 NTVGVPEIR-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQ----- 164
V + + + A++ TSM PL GDI++ +
Sbjct: 118 VLVYRHQHAVRLKSNLLAVEIGQ-----GSTSMEPLLHPGDIVLCDRDDFKPTKPGGIFL 172
Query: 165 VN--------CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWI 215
V R+ IKP D++ S + SL Y + E I
Sbjct: 173 VREPGQHGGAKIKRVSIKPVDHDLLITFYSQDTVNSPPETFSLRGDYNDNITEAI----I 228
Query: 216 ARILWASQ 223
R +WA Q
Sbjct: 229 GRCVWAWQ 236
>gi|260889363|ref|ZP_05900626.1| putative LexA repressor [Leptotrichia hofstadii F0254]
gi|260860774|gb|EEX75274.1| putative LexA repressor [Leptotrichia hofstadii F0254]
Length = 187
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 89 EIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
+IP+ +G+G D V + I + + ++ +D + + SM
Sbjct: 47 QIPIYGMASAGNGLIEMDENV-------EEIEYISIPNINKN---VKKRDFACRVRGDSM 96
Query: 148 LPLYRKGDILI--LNSAIQVN--CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
P Y GDI++ + I + G LI + +V ++ L S N Y
Sbjct: 97 EPHYHDGDIIVVDVQDGIDIRILNGQEALIYQEDSKYLKRVFFEEGTGNLILKSYNPAYA 156
Query: 204 VDTVEMSDIE 213
+ +++
Sbjct: 157 DYIIPNHELD 166
>gi|148239417|ref|YP_001224804.1| SOS-regulated protein [Synechococcus sp. WH 7803]
gi|147847956|emb|CAK23507.1| Bacterial UmuD protein homolog (SOS-regulated protein)
[Synechococcus sp. WH 7803]
Length = 147
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P ++ +PL + FP+ + V V ++ + T
Sbjct: 9 PVPLPLRCQRPPLHLPLAGERVA--------AGFPSPAD-DYVEV--GIDLNDQLIRHPT 57
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM GD+L+++ ++ G R+++ G K L RG+ +
Sbjct: 58 STFFLRVSGDSMTGAGIHDGDLLVVDRSLDPRPG-RVVVAVLDGGFTLKRLARHRGQ-LR 115
Query: 195 LMSLNCCYPVDTV 207
L + N YP +
Sbjct: 116 LEAANPDYPPLDL 128
>gi|59712644|ref|YP_205420.1| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114]
gi|59480745|gb|AAW86532.1| transcriptional repressor, Cro/CI family [Vibrio fischeri ES114]
Length = 215
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--QTQDTRHKT 142
K + P++ + +G WN + + ++ + K
Sbjct: 86 KPQGSYPVISWVQAG--------------GWNDIHLTDLHDADYYPCPVRCSKNTFLLKV 131
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCC 201
SM P++R+G+++ ++ ++ G ++ + K LI G+ L + N
Sbjct: 132 VGKSMNPVFREGELIFVDPDVEAVNGKYVVARLDDENQATFKQLIIEDGKKF-LQAANPD 190
Query: 202 YPVDTVE 208
+P +
Sbjct: 191 WPTPIIP 197
>gi|332652440|ref|ZP_08418185.1| toxin-antitoxin system, antitoxin component, Xre family
[Ruminococcaceae bacterium D16]
gi|332517586|gb|EGJ47189.1| toxin-antitoxin system, antitoxin component, Xre family
[Ruminococcaceae bacterium D16]
Length = 275
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 37/166 (22%)
Query: 69 ICQLLDLPFSDGRTTEKKEK------EIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVP 121
+ + + GR E+ E+P+ +G G F D G F + P
Sbjct: 113 LDEYKMDLIASGRYRPAPERYTETYIEMPVSTLAVSAGVGEFLDEGGF------EMIRFP 166
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ P N + + + SM P+Y G I+ + + G + + G+
Sbjct: 167 KSAVPGNADFGV-------RVNGDSMEPVYHDGQIVWVEKRDTLQPG-EVGVFICNGEGY 218
Query: 182 AKVLISRRG----------------RSIDLMSLNCCYPVDTVEMSD 211
KV + + I L+S N Y + SD
Sbjct: 219 LKVYDHQEPSEESKDDYVDSYGILHQQIILVSYNKLYSPKLISPSD 264
>gi|54296142|ref|YP_122511.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris]
gi|53749927|emb|CAH11312.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris]
Length = 227
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 25/193 (12%)
Query: 21 NLTPSGLARKAG-LDPTSFNKSKRFGI--EGRNRWPSTE---SIFKILAATNETICQLLD 74
LT L AG L T R +G R P E S+ + L + + L D
Sbjct: 22 GLTLKALGELAGGLKQT------RLTNWEQGV-RTPGPEEIKSLARALDVSPAYLMCLSD 74
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ IPLL + + + + V P +
Sbjct: 75 ELQFKEAKNPSQL--IPLLDYRQACEASL--HTGAESSGDKVFISVSTSLQPE-----LS 125
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRGR 191
T K D SM+P R D+L++ ++ GD + +K I +S
Sbjct: 126 TDAFALKITDDSMMPEIRINDVLVIEPSVLPEPGDFVAVKINGKPETIICQYKKLSYTSS 185
Query: 192 SIDLMSLNCCYPV 204
+L++LN +P
Sbjct: 186 EFELLTLNDNWPN 198
>gi|71065042|ref|YP_263769.1| Cro/CI family transcriptional regulator [Psychrobacter arcticus
273-4]
gi|71038027|gb|AAZ18335.1| possible transcriptional regulator, Cro/CI family [Psychrobacter
arcticus 273-4]
Length = 224
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ ++ +K K +P+ G GF+ + + V I A+
Sbjct: 73 EAKSAKKLIKYVPVKGSAQMGDNGFWSELDYMGAGGDGYLEVNNASDSAYVIRAV----- 127
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
SM P R G ++ + + + G+ + I + G + K +S + ++L+S+
Sbjct: 128 -----GDSMFPAIRSGWYIVFDPSREACSGEYVHIVLKDGRNMVKEYVSCQHGIVNLISV 182
Query: 199 N 199
N
Sbjct: 183 N 183
>gi|162147707|ref|YP_001602168.1| LexA repressor [Gluconacetobacter diazotrophicus PAl 5]
gi|209542331|ref|YP_002274560.1| LexA repressor [Gluconacetobacter diazotrophicus PAl 5]
gi|189046538|sp|A9HJ64|LEXA_GLUDA RecName: Full=LexA repressor
gi|161786284|emb|CAP55866.1| putative lexA repressor [Gluconacetobacter diazotrophicus PAl 5]
gi|209530008|gb|ACI49945.1| SOS-response transcriptional repressor, LexA [Gluconacetobacter
diazotrophicus PAl 5]
Length = 253
Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 53 PST-ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
P+T ES N + TE +P +G + T
Sbjct: 93 PATDESAAAESFVPNVIKGDFANRLAGASVATEAGAIHLPFYGRIAAGQPI---EALRET 149
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
G + VP H YA++ SM GD +I+ G
Sbjct: 150 GA---QIEVPMNLLGHGEHYALE-------VAGDSMIEAGILDGDTVIIRRGDVAQNGQI 199
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
++ ++ K L R G +I L N Y V +
Sbjct: 200 VVALIDDQEVTLKRLRRR-GSTIALEPANARYEPRIVPSDRV 240
>gi|297568146|ref|YP_003689490.1| Peptidase S24/S26A/S26B, conserved region [Desulfurivibrio
alkaliphilus AHT2]
gi|296924061|gb|ADH84871.1| Peptidase S24/S26A/S26B, conserved region [Desulfurivibrio
alkaliphilus AHT2]
Length = 145
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + + A + SM+ DIL+++ +++
Sbjct: 29 SAGFPSPAD-DYIE--GRLDLNQLMIANPAATFFVRVAGDSMIGAGIHHHDILVVDRSLE 85
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
G +++I G++ K L + G +I L + N YP
Sbjct: 86 PTDG-KVVIAVVDGELTVKRLRRQNG-TIRLQAENPDYP 122
>gi|227499696|ref|ZP_03929799.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC
35098]
gi|227218293|gb|EEI83552.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC
35098]
Length = 233
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 13/156 (8%)
Query: 57 SIFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
S K+LA+ +I +L P K I + P
Sbjct: 74 SKLKMLASIYGISISELTGEPEKKEPIQNKDYITINIYGSI---------PAGIPIEAIE 124
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ ++ Y + SM P Y GD +I+ G +
Sbjct: 125 DISDTEDLSLKE---YDKNKTYLGLRVDGDSMYPKYLDGDTVIIEKTPDCESGTDAAVYV 181
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ K +I +I L +N Y T D
Sbjct: 182 NGYEATLKTVIKNENGTITLKPINANYAPRTYGPGD 217
>gi|148557717|ref|YP_001265299.1| putative phage repressor [Sphingomonas wittichii RW1]
gi|148502907|gb|ABQ71161.1| putative phage repressor [Sphingomonas wittichii RW1]
Length = 216
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 9/216 (4%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
+ A+D + S ++R G +P ++F G R S E ++ A
Sbjct: 3 DDVRSALDALIRERGEDYSAISRLLGRNPAYI---QQFIKRGSPRKLSEEDRLRLAAYFR 59
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+L +DG L+ P G G + + +
Sbjct: 60 VPETRLGG--RADGGPAGDMALAAALVTVPRIAIGASAGPGGIAEIEERDRPIAFDDGLL 117
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185
+ + + + SM P GD ++++ + G +++ ++ K L
Sbjct: 118 RDLGAGRRAALSIIRVAGESMEPTLHDGDDILVDRDASEIRPGGIYVLRLDD-LLMVKRL 176
Query: 186 ISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220
+ R + + S N +P + + ++ I R+LW
Sbjct: 177 LRDD-RGLVVHSDNPAHPEIAGFDPATLQVIGRVLW 211
>gi|323517754|gb|ADX92135.1| putative repressor protein from bacteriophage [Acinetobacter
baumannii TCDC-AB0715]
Length = 246
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+ + G G++ + GN + VP + + N YA++ SM P
Sbjct: 105 VPVKSYSKMGMDGYYTEMGY-LGNGGDGY-VPSLTAGPN-AYAVRGT-------GDSMYP 154
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
R G ++ + + + + ++ + G K I + L+++N T++M
Sbjct: 155 AIRNGWYVVCDPDAEPTPTEFVEVQLKDGRRTIKEFIGIVNNVLHLLAVNGE-ARMTIDM 213
Query: 210 SDIEWI 215
D+ I
Sbjct: 214 EDVSAI 219
>gi|270157680|ref|ZP_06186337.1| putative phage repressor [Legionella longbeachae D-4968]
gi|269989705|gb|EEZ95959.1| putative phage repressor [Legionella longbeachae D-4968]
Length = 228
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 20/205 (9%)
Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATNETICQLLDLPF 77
++ T GL RKA + T K R R R P I ++ A + L+ L
Sbjct: 14 KNERTAKGLTRKALAELTESLKVSRINNYERGERTPGPNEIKQLAEALEVSPAFLMCLSD 73
Query: 78 SDGR---TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----SPHNGI 130
IPLL + + + + +P
Sbjct: 74 DRQGKLKQAPGLGSLIPLLNYNQACKPELYIEEIKNESYSEKVTLIPISSLLYERIGKNA 133
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRR 189
+A++ +D SM P R D +I + + GD ++ K +++ +
Sbjct: 134 FALE-------IKDDSMSPELRVNDTVIADPDTPPSPGDFVIAKLEHNNEVIIRKYKQLS 186
Query: 190 GRSI----DLMSLNCCYPVDTVEMS 210
I +L++LN + V
Sbjct: 187 AAKIANEFELIALNQDWASIHVGAE 211
>gi|19919304|gb|AAM08234.1| putative phage repressor [Legionella pneumophila]
gi|307608914|emb|CBW98314.1| putative phage repressor [Legionella pneumophila 130b]
Length = 227
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 23/192 (11%)
Query: 21 NLTPSGLARKAG-LDPTSFNKSKRFGI--EGRNRWPSTESIFKILAATNETICQLLDLPF 77
LT L AG L T R +G R P E I + A + + L+ L
Sbjct: 22 GLTLKALGELAGGLKQT------RLTNWEQGV-RTPGPEEIKLLAQALDVSPAYLMCLSD 74
Query: 78 SDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+ K + IPLL + + + +V +A+
Sbjct: 75 TQLHREAKNPSQLIPLLDYRQACEAKLHTGAEISGDKVFISVSTALQPELSTDAFAL--- 131
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR----RGRS 192
K D SM+P R D+L++ + GD + +K +G A + +
Sbjct: 132 ----KITDDSMMPEIRINDVLVIEPCVLPEPGDFVAVKI-SGKPEAIICQYKKLSYTSSE 186
Query: 193 IDLMSLNCCYPV 204
+L++LN +P
Sbjct: 187 FELLTLNDNWPN 198
>gi|324017929|gb|EGB87148.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
Length = 103
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQ----DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
W VG E+ Y + SM+ YR GD++ ++ + G
Sbjct: 5 GAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG 64
Query: 169 DRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
D ++ G+ K LI + L +LN +P +
Sbjct: 65 DDVIALMHDSGETTFKRLIEDGTQRY-LKALNPNWPEPYI 103
>gi|38505658|ref|NP_942279.1| hypothetical protein sll5123 [Synechocystis sp. PCC 6803]
gi|38423682|dbj|BAD01893.1| sll5123 [Synechocystis sp. PCC 6803]
Length = 144
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + + + SM+ GDILI++ +++
Sbjct: 28 SAGFPS-PAEDYLE--GKLDLNQYLIKHPAATFFVRVTGDSMIGAGIHAGDILIVDRSLE 84
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
G +++I G+++ K L + I L S N YP +
Sbjct: 85 PRDG-KVVIAVVNGELLVKRL-RMEKQKIYLASENSDYPPLVI 125
>gi|307608926|emb|CBW98330.1| putative repressor [Legionella pneumophila 130b]
Length = 227
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 25/193 (12%)
Query: 21 NLTPSGLARKAG-LDPTSFNKSKRFGI--EGRNRWPSTE---SIFKILAATNETICQLLD 74
LT L AG L T R +G R P E S+ + L + + L D
Sbjct: 22 GLTLKALGELAGGLKQT------RLTNWEQGV-RTPGPEEIKSLARALDVSPAYLMCLSD 74
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ IPLL + + + + V P +
Sbjct: 75 ELQFKEAKNPSQL--IPLLDYRQACEATL--HTGAESSGDKVFISVSTSLQPE-----LS 125
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRGR 191
T K D SM+P R D+L++ ++ GD + +K I +S
Sbjct: 126 TDAFALKITDDSMMPEIRINDVLVIEPSVLPEPGDFVAVKINGKPETIICQYKKLSYTSS 185
Query: 192 SIDLMSLNCCYPV 204
+L++LN +P
Sbjct: 186 EFELLTLNDNWPN 198
>gi|110598195|ref|ZP_01386472.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium
ferrooxidans DSM 13031]
gi|110340209|gb|EAT58707.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium
ferrooxidans DSM 13031]
Length = 241
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 26/167 (15%)
Query: 57 SIFKILAATNETICQLL-----------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
S+ K + + + + ++PL + + G D
Sbjct: 71 SMLKKPEESGISPDEFSRRITLLEKQMQQFVINTIEPESPSLAKVPL--YSSAVPAGMPD 128
Query: 106 SGVFPTGNKWNTVGVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
+ + +P + IYA+ K SM+ + GD+L++ +
Sbjct: 129 PA---SDEIEEYLDMPASWAQGKKNIYAL-------KVNGDSMVDIGIMPGDLLMVEART 178
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
G ++++ G++ K L +I LM N YP +
Sbjct: 179 TARDG-QVVVACINGEVTVKTLCISNTGTISLMPENKRYPPIAITAD 224
>gi|85372990|ref|YP_457052.1| prophage MuMc02-like, S24 family peptidase [Erythrobacter litoralis
HTCC2594]
gi|84786073|gb|ABC62255.1| prophage MuMc02-like, peptidase, family S24 [Erythrobacter
litoralis HTCC2594]
Length = 211
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 10/151 (6%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L EIP+L +G G S T ++ + + S + +
Sbjct: 62 QLLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLRHLTSAKSASLS 121
Query: 133 IQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-G 190
I + SM P GD +L+ S D + + +V K + + G
Sbjct: 122 I------VGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRIAIKPGG 175
Query: 191 RSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
R I + S N YP ++ S++ + R++W
Sbjct: 176 RQITIASDNPAYPTWHDMDRSEVHVVGRVIW 206
>gi|28870585|ref|NP_793204.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
gi|28853833|gb|AAO56899.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
Length = 243
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 82 TTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
++PL+ + +G+ + + + W + VP I +
Sbjct: 106 PLPNTSGKVPLISWVQAGAWCETYSNVESESAESWLSCPVP-----------ISSSGYAL 154
Query: 141 KTQDTSML-P----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGRSID 194
K + SM P Y G I+ ++ ++V+ GDR++ + RT + KV + G+
Sbjct: 155 KVRGDSMTNPGLGRSYPAGCIIFVDPEVEVHTGDRVIARLDRTNEATFKVFVEDAGQQF- 213
Query: 195 LMSLNCCYP 203
L +N YP
Sbjct: 214 LKPINPQYP 222
>gi|226940501|ref|YP_002795575.1| UmuD protein [Laribacter hongkongensis HLHK9]
gi|226715428|gb|ACO74566.1| UmuD protein [Laribacter hongkongensis HLHK9]
Length = 206
Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 15/161 (9%)
Query: 58 IFKILAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
+ K A +I +L + + P+L P +G P+ +
Sbjct: 47 LVKARQAARLASIEELAGQYPGEVLL---PARLAPVLGMPLHAAGV---RAGMPSPAD-D 99
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR-KGDILILNSAIQVNCGDRLLIKP 175
V + ++ + + + SM + GDIL+++ + + GD +++
Sbjct: 100 YVE--DTLDLNHYLIDDAPSTFLVRAKGESMTGAHVFDGDILVVDKSRTPSSGD-IVVAA 156
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPV--DTVEMSDIEW 214
G+ K L + GR I L + N YP + E + W
Sbjct: 157 IEGEFTVKRLQRQGGRVI-LKAANPDYPDIVPSYEQELVIW 196
>gi|259418887|ref|ZP_05742804.1| LexA repressor [Silicibacter sp. TrichCH4B]
gi|259345109|gb|EEW56963.1| LexA repressor [Silicibacter sp. TrichCH4B]
Length = 232
Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
Q + + SM+ GD++++ + GD ++ + K + GR I
Sbjct: 142 GQHYALEVRGDSMIDAGINDGDVVVIRETDAADNGDIVVALVEGHEATLKRFERK-GRMI 200
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
+L + N YP + ++ R++
Sbjct: 201 ELHAANPAYPTRSYSEDQVKVQGRLV 226
>gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium
prausnitzii A2-165]
gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium
prausnitzii A2-165]
Length = 209
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 44/219 (20%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
++ +++ + LA G+ + K S + + P+T + K+ + T LL L
Sbjct: 12 KQKHMSQAELASLLGVTQQAVGKWESGKSSPD-----PTT--VAKLAEILDTTADYLLGL 64
Query: 76 --PFSDGRTTEKKEKE-----IPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSP 126
P ++G+T E+ IP++ +G G + + ++ P
Sbjct: 65 FDPTAEGQTEERFFGSYVYSLIPVIGTVKAGYGALAYEEDYGK---------EYARVKDP 115
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVL 185
+ Y + SM P GD+ +++ + GD +LI G+ L
Sbjct: 116 SSYFY--------LVVRGDSMEPRIHDGDLALVHRQDTLENGDLGVLIYGDEGE---GTL 164
Query: 186 IS--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219
+RG + L N Y ++ ++ + R++
Sbjct: 165 KRYLQRGNCVVLQPFNPAYKEMVIKGEELNHLHIAGRVV 203
>gi|226940092|ref|YP_002795165.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
gi|226715018|gb|ACO74156.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
Length = 242
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
N + A + + SM + D++++N A + G +++ G +V K +
Sbjct: 141 ENYLRANPDELSVIAVDGDSMEGVLNDRDVILVNHADRDPRGSIYVLRI-DGHLVVKQVQ 199
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARILW 220
G +++ S N Y TVE+ + + I R++W
Sbjct: 200 RLPGGILEVSSSNPAYKPFTVELGKVGDDFDVIGRVVW 237
>gi|13477014|ref|NP_108584.1| repressor protein C [Mesorhizobium loti MAFF303099]
gi|14027777|dbj|BAB54370.1| repressor protein C [Mesorhizobium loti MAFF303099]
Length = 246
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 25/160 (15%)
Query: 74 DLPFSDGRTTEKKEK-----EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
LP + + E+ IP+L G G F G V P +
Sbjct: 93 SLPKPNASFPPRYEQFPQVGTIPVLGQSVGGPNGRFVLNGQEAGR----VFCPPMLENVE 148
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV------A 182
G YA+ + TSM P Y G+ + +N V GD ++++ D
Sbjct: 149 GAYAV-------RVYGTSMEPRYFAGETIWINPHEPVRSGDFVVVQVVGDDDDDTRDSYI 201
Query: 183 KVLISRRGRSIDLMSLNCCY---PVDTVEMSDIEWIARIL 219
K +SR + L LN + + +I+
Sbjct: 202 KQFMSRSNSLVRLRQLNPDEGENETLDFPTKRVFSVHKIV 241
>gi|82542851|ref|YP_406799.1| phage repressor [Shigella boydii Sb227]
gi|81244262|gb|ABB64970.1| putative phage repressor [Shigella boydii Sb227]
Length = 224
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ- 136
+ T K+ +P++ + +G+ W VG E+ Y
Sbjct: 80 PEVSITNKQITLVPVISWVQAGA--------------WKEVGYSEVDLSTAETYPCPVPC 125
Query: 137 ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
+ SM+ YR GD++ ++ + GD ++ G+ K LI +
Sbjct: 126 GEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQR 185
Query: 193 IDLMSLNCCYPVDTV 207
L +L+ +P +
Sbjct: 186 Y-LKALHPNWPEPYI 199
>gi|34556743|ref|NP_906558.1| hypothetical protein WS0307 [Wolinella succinogenes DSM 1740]
gi|34482457|emb|CAE09458.1| hypothetical protein WS0307 [Wolinella succinogenes]
Length = 218
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G GG F+ K + V + Q SM P GD
Sbjct: 94 ASAG-GGAFNDTEACERIKLDAFWVERLGGEKEI-----KQIEAIAVTGDSMEPTLEDGD 147
Query: 156 ILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
++ ++ Q++ G +I+ G I K L R +D++S N YP T+E IE
Sbjct: 148 LIFIHRQKRQISKGGIFVIQTPHG-IFVKRLQERLDGGVDILSDNSLYPTQTLERDGIEV 206
Query: 215 IARIL 219
I R++
Sbjct: 207 IGRVV 211
>gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002]
gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002]
Length = 324
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 74/235 (31%), Gaps = 40/235 (17%)
Query: 12 AIDRMAER-------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
++D + +R LT LA++ G+ + N F GRN+ T+ + I A
Sbjct: 93 SMDTLGKRVTHARELKGLTQLELAKRVGVSAQTIN----FVENGRNK--GTKHLLAIAKA 146
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDS-GVFP-TGNKWNTV 118
+ L G TE + I + SG F V P G
Sbjct: 147 LGVSA---TWLDSGKGSMTEVSLRPIEVWEDEEQLAQSGEYIFLPELSVRPSAGPGAQVW 203
Query: 119 GVPEIRSPHNGIYAI--------QTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNCG 168
V + A SM P GD +++ + G
Sbjct: 204 HV-DTAGQRQAFTAKWARRMSIDPACAATMVVSGDSMEPRLLDGDSIVVDYCQNDTIIDG 262
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIA-RIL 219
++ + ++ K L G + + S N +P V ++ + RI+
Sbjct: 263 -KVYVLVINDEVKVKRLFKAIGGGLIIRSDNPDKNTHPDLNVRAEEM--MHVRIV 314
>gi|121611811|ref|YP_999618.1| LexA repressor [Verminephrobacter eiseniae EF01-2]
gi|171769494|sp|A1WSJ3|LEXA_VEREI RecName: Full=LexA repressor
gi|121556451|gb|ABM60600.1| SOS-response transcriptional repressor, LexA [Verminephrobacter
eiseniae EF01-2]
Length = 224
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-------TVGVPEIRS 125
++L R + + ++ SG G P + W G P +
Sbjct: 59 IELVSGTSRGIRLHSETLRSIHAARSGPSG----AGNPGSSPWVLPLIGRVAAGSPILAQ 114
Query: 126 PH-NGIYAIQ------TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
H Y+++ D K + SM GD+L + + + G ++ +
Sbjct: 115 EHVEQTYSVENGLFQHKPDYLLKVRGMSMRDAGIIDGDLLAVQATREARNGQIIVARLGD 174
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D+ K L R +I+L+ N YPV V+ +
Sbjct: 175 -DVTVKRL-RRTASTIELLPENPDYPVIVVQPGE 206
>gi|332875243|ref|ZP_08443075.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
gi|332736500|gb|EGJ67495.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
Length = 227
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 23/133 (17%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ +IP+L + + G F+S + P G + T A +
Sbjct: 89 NNDEISKIPVLDYVQA---GLFNSVGYDGVNPIGETYTTYKS-----------AKEKSVF 134
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR----GRSI- 193
Q SMLP ++ GD+L +++A+ G ++ + + K GR I
Sbjct: 135 SLTVQGDSMLPDFKPGDLLTIDTALMPQPGSFVVAQNGDYEATFKKYRVIGYDDFGREIF 194
Query: 194 DLMSLNCCYPVDT 206
+L+ LN YP +
Sbjct: 195 ELVPLNPDYPTLS 207
>gi|226357661|ref|YP_002787401.1| repressor lexA [Deinococcus deserti VCD115]
gi|226319652|gb|ACO47647.1| putative repressor lexA [Deinococcus deserti VCD115]
Length = 211
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 19/173 (10%)
Query: 53 PSTESIFKILAATNETICQL---LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
P+T + + AT T + L + PL+ + + G F
Sbjct: 25 PAT--LGAVAQATGLTKQAVSYQTVLLREAHYLEPAASRYAPLILTSKARA--LIGGGGF 80
Query: 110 PTGNKWNTVGVPEIRSPHNGIYA--------IQTQDTRHKTQDTSMLPL-YRKGDILILN 160
P G P + Y ++ D + + SM+ + DI+I+
Sbjct: 81 PL-VGEIAAGQPGHAEQNVEAYITRLDQVIDMKEGDYLLRVRGDSMIGVGIYPQDIVIVR 139
Query: 161 SAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
V GD +++ P K + + + I L S N YP T D+
Sbjct: 140 PNETVPNGDIAVVLLPGESTATLKRVEHQNSK-ITLHSANPDYPPMTFPARDV 191
>gi|309973095|gb|ADO96296.1| Probable prophage repressor protein [Haemophilus influenzae R2846]
Length = 218
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEVLAFNSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTVIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIAPT 153
Query: 167 CGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G + + K L +R I +L+ LN +P + +I RI+
Sbjct: 154 PGKFVAAINGDNEATFKQYKELGTRTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 208
>gi|53728788|ref|ZP_00135141.2| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
Length = 169
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 32/174 (18%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPT 111
E I K++ +L + K PL+ +G S F DS +
Sbjct: 8 EVIAKVI---GIEPAKLAFGDPNVEPVIVKDSYSYPLVSSIQAGVWTESCDFRDSQGY-- 62
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ + EI + +G + + SM P + +GD+++++ Q GD +
Sbjct: 63 ----DYID-SEIDAGEDGFF--------LRVSGMSMEPKFSEGDLVLIDVRKQPRPGDFV 109
Query: 172 LIKPRTGDIVAK------VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G+ K L +L+ LN +P + DI RI+
Sbjct: 110 AAVNGNGEATLKRYRELGDLSPSGNPHFELVPLNPDFPTLSSMKQDI----RII 159
>gi|319776463|ref|YP_004138951.1| putative prophage repressor CI [Haemophilus influenzae F3047]
gi|329123953|ref|ZP_08252504.1| LexA family repressor/S24 family protease [Haemophilus aegyptius
ATCC 11116]
gi|317451054|emb|CBY87286.1| Putative prophage repressor CI [Haemophilus influenzae F3047]
gi|327468035|gb|EGF13524.1| LexA family repressor/S24 family protease [Haemophilus aegyptius
ATCC 11116]
Length = 218
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEVLAFDSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTVIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPT 153
Query: 167 CGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G ++ + K L ++ I +L+ LN +P + +I RI+
Sbjct: 154 PGKFVVAINGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 208
>gi|296283572|ref|ZP_06861570.1| prophage MuMc02-like, S24 family peptidase [Citromicrobium
bathyomarinum JL354]
Length = 211
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
+ EIP+L +G G S T ++ + + S + +
Sbjct: 62 QVLGGPANPVTDGMIEIPVLDVEASAGFGAVAASETAHTRFGFDERWLRHLTSAKSASLS 121
Query: 133 IQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-G 190
I + SM P GD +L+ +S D + + +V K + + G
Sbjct: 122 I------VGVKGDSMEPTLSDGDEVLVDSSDHGSRLRDGIYVLRSDDTLVVKRIAIKPGG 175
Query: 191 RSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
R I + S N YP ++ +++ + R++W
Sbjct: 176 RQITIASDNPAYPTWHDMDRAEVHVVGRVIW 206
>gi|188533594|ref|YP_001907391.1| Protein UmuD [Erwinia tasmaniensis Et1/99]
gi|188028636|emb|CAO96498.1| Protein UmuD [Erwinia tasmaniensis Et1/99]
Length = 139
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + + A K SM GD+L+++ ++
Sbjct: 23 PCGFPS-PAQDYVE--DRLDLNTLLIAHPGATYFIKVSGESMTGAGIGDGDLLVVDRSLS 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R S+ L+ N Y T ++
Sbjct: 80 ARHGD-IVIAAVAGEFTVKEL--RTHPSLQLVPHNDSYSPMTFHNAE 123
>gi|259908182|ref|YP_002648538.1| Protein UmuD [Erwinia pyrifoliae Ep1/96]
gi|224963804|emb|CAX55306.1| Protein UmuD [Erwinia pyrifoliae Ep1/96]
gi|283478109|emb|CAY74025.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
pyrifoliae DSM 12163]
gi|310767905|gb|ADP12855.1| Protein UmuD [Erwinia sp. Ejp617]
Length = 139
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + K SM GD+LI++ ++
Sbjct: 23 PCGFPS-PAQDYVE--DRIDLNKLAIKHPSATYFIKVSGDSMREAGIGDGDLLIVDRSLN 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD +++ G+ K L R + L+ N YP + + ++
Sbjct: 80 AVHGD-IVVAAIAGEFTVKEL--RTHPVLQLVPHNPHYPPISFQNAE 123
>gi|149184889|ref|ZP_01863206.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21]
gi|148831000|gb|EDL49434.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21]
Length = 211
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 25/216 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+DR+ ++ L S ++R G + + ++F G R K+ T+
Sbjct: 8 LDRLIQQRRLGYSSISRMIGRNSSYI---QQFIKRGSPR--------KLDDDDRRTLASF 56
Query: 73 LDLPFSDGRTTEKKEK----EIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ + EIP+L +G G +S T ++ + +
Sbjct: 57 FGVDEQVLGGPPAPMRDGLIEIPVLNVDASAGFGAIAESETAHTRFGFDERWLARLTRAK 116
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ +I SM P GD +L+ S D + + +V K +
Sbjct: 117 SASLSI------IHVLGDSMEPTLSDGDEVLVDASDQGSRLRDGIYVLRADDALVVKRVT 170
Query: 187 SRR-GRSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
+ GR I + S N YP D V+ S+I+ + R++W
Sbjct: 171 LKPGGRKITISSDNSAYPSWDDVDRSEIQVVGRVIW 206
>gi|153800394|ref|ZP_01954980.1| HTH-type transcriptional regulator for conjugative element SXT
[Vibrio cholerae MZO-3]
gi|124124020|gb|EAY42763.1| HTH-type transcriptional regulator for conjugative element SXT
[Vibrio cholerae MZO-3]
Length = 215
Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 49/205 (23%)
Query: 21 NLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILA------ATNETICQL 72
+T S LAR+ G+ S ++ S G R+R+ T I + L AT
Sbjct: 16 GVTQSELARRIGIKQQSISQICS---GKSARSRY--TMQIAEALRVNAHWLATG---DGE 67
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS-----GGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ L + + IPL+ + +G GF +W V H
Sbjct: 68 IGLGVGNVEVGPDIKGRIPLINWVQAGDWTEIAEGFAHED----AEEWREV----TGKAH 119
Query: 128 NGIYAIQTQDTRHKTQDTSML--------PLYRKGDILILNSAIQVNCGDRLLIKPRTG- 178
G +A+ + + SM P +G I++++ + + G ++
Sbjct: 120 EGCFAL-------RVKGDSMENPSGKKSIP---EGAIIVVDPEMPYSSGSLVVACLDDSI 169
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYP 203
+ K L+ + L LN YP
Sbjct: 170 EATFKQLVIDGDQRY-LKPLNPQYP 193
>gi|291296371|ref|YP_003507769.1| peptidase S24 and S26 domain-containing protein [Meiothermus ruber
DSM 1279]
gi|290471330|gb|ADD28749.1| peptidase S24 and S26 domain protein [Meiothermus ruber DSM 1279]
Length = 241
Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 23/177 (12%)
Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
R G P +++++ A + + L++ + D E +IP++ + +GSG
Sbjct: 65 RQSAAGTWVRPDIRTLWRLAKALDVPLVYLIERFYDDLEDVEALWPQIPIIGWVGAGSG- 123
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILI 158
+ + E P + A++ K + SM P+ GD++I
Sbjct: 124 -------------SEEDIREKYVPVDMDIALRGSAVAFKVRGNSMCAGPKPIC-DGDVII 169
Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP---VDTVEMSDI 212
++ + G R++ + G+ V K+L + L+S N D + S +
Sbjct: 170 VDCRNKGRVGSRVVARLADGNYVCKLLKHGPNGNY-LVSANPSSDNSYPDVIPASSV 225
>gi|307308739|ref|ZP_07588435.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
BL225C]
gi|306900745|gb|EFN31356.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
BL225C]
Length = 272
Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 34/221 (15%)
Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
W+ +D + + LAR++G+ + NK R IE + R + E++ + + +
Sbjct: 42 WKRLDERRKELGWNKAELARRSGIPYDNINKYLRGEIE-QPRGDALETLARTIKRPLLWL 100
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---SGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+++ + + L+ +G FD + VP
Sbjct: 101 RDGIEVEGGELVPAPGRLVAGALVGKAEAGTFREVDAFDQAER------EVIAVPPDERF 154
Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILI------LNSAIQVNCGDRLLI-K 174
N + SM P+ GD LI + + G +++ +
Sbjct: 155 PNA------RILVFDVAGDSMNDLRPRPIL-DGDRLICVAYEDVAHEAVLRDGMVVVVER 207
Query: 175 PRTG----DIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS 210
R G + K + +GR+ S N + VE
Sbjct: 208 TRDGGQTREWSVKQVEIYQGRTEFHPRSTNPKHKPIVVERD 248
>gi|312897732|ref|ZP_07757148.1| LexA repressor family protein [Megasphaera micronuciformis F0359]
gi|310621116|gb|EFQ04660.1| LexA repressor family protein [Megasphaera micronuciformis F0359]
Length = 218
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 21/202 (10%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETICQLLDL 75
+ H L+ ++ GL + +R + PS +++ I + LL
Sbjct: 13 QSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIADGLEMDLDVLLRS 72
Query: 76 PFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
+ T K +IP+L + P + EI
Sbjct: 73 IDPSQKIKINNTHPKGVQIPVLGRVVA---------GVPLEAVEEILDYEEITPE----L 119
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
A + + + SM P +GD++I+ V+ GD ++ + K + + R
Sbjct: 120 AATGEFFALQIRGRSMEPRMLEGDVVIVRRQSDVDSGDIAIVLVNGDEATVKRVS-KSDR 178
Query: 192 SIDLMSLNCC-YPVDTVEMSDI 212
I L++ N Y +I
Sbjct: 179 GITLIATNPNVYEPHFYSSEEI 200
>gi|311695997|gb|ADP98870.1| phage repressor [marine bacterium HP15]
Length = 225
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 23/211 (10%)
Query: 21 NLTPSGLAR----KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
L SG AR KAG+ ++F R + G P +S+ +I A ++ L
Sbjct: 24 GLVGSGSARSFAHKAGMGDSTF----RNILNGAL--PRLDSLLRIAKAAGVSVEWLATGK 77
Query: 77 FSDGRTTEKKE--KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
++ +E IP + G PT + R +Q
Sbjct: 78 EPAKSDSQFEEEFALIPGYNVQVAAGHGSIAGDEAPT----RELAF---RRKWLRFRGLQ 130
Query: 135 TQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM P + ++++++ + + + ++ K + + +
Sbjct: 131 ENELALVFAKGDSMEPTISDNETVMVDTSEKKLRDGHIYVIRNGDHLLVKRIQTLWNDGV 190
Query: 194 DLMSLNCCYPVDTVEMSDIE---WIARILWA 221
L+S N YP + SD+E I +++W
Sbjct: 191 QLLSDNKEYPPQEISKSDLENLDVIGKVVWV 221
>gi|167746119|ref|ZP_02418246.1| hypothetical protein ANACAC_00815 [Anaerostipes caccae DSM 14662]
gi|167654634|gb|EDR98763.1| hypothetical protein ANACAC_00815 [Anaerostipes caccae DSM 14662]
Length = 209
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
+ P + EI A + SM P + +GD++I+
Sbjct: 90 AAGIPIDAVEEIIDTEEITED----MAKTGTFFGLQIHGNSMEPKFSEGDVVIVRQQDDA 145
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
D ++ + K L I L+S N Y +I
Sbjct: 146 ETDDIVIAIVNGDEATCKKLKKYN-DGIVLISTNPAYEPMYFSNKEI 191
>gi|293433433|ref|ZP_06661861.1| transcriptional regulator [Escherichia coli B088]
gi|291324252|gb|EFE63674.1| transcriptional regulator [Escherichia coli B088]
Length = 228
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 30/224 (13%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAAT----------N 66
E+ ++ + LA K GL S +K E + R + I K+L + N
Sbjct: 13 EKAGMSQAQLAEKIGLSQQSV--AKIENGETLQPR--KIKEIAKVLGVSQKWLQLGIEDN 68
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+I L+ IP+L S G + + W P R+
Sbjct: 69 ASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAE-IVESAIDW----FPLRRAD 123
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDIV-AK 183
+ + S+LP+ GD++ + + + + GD L R G ++ K
Sbjct: 124 LRKSGVCASNAKIVQIWGNSLLPVLNNGDLVAVDISQTVPIRDGD--LYAVRDGVLLRVK 181
Query: 184 VLISRRGRSIDLMSLN-CCYPVDTV----EMSDIEWIARILWAS 222
+LI+ + L S N YP + + + I I R+ W+S
Sbjct: 182 ILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225
>gi|307544695|ref|YP_003897174.1| phage repressor [Halomonas elongata DSM 2581]
gi|307216719|emb|CBV41989.1| putative phage repressor [Halomonas elongata DSM 2581]
Length = 251
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 39/217 (17%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET---- 68
I R+ +AR+AG+ ++ S+ G+ PS + K+ +
Sbjct: 31 IRRLINESGKRAIDVAREAGVPQSTL--SRILT--GKIEEPSDRPVAKLAEYFGVSGDQI 86
Query: 69 --------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
I Q L S+ K E +P++ + +GS
Sbjct: 87 RGREPIETEGSADKIAQHPALHESNVAPPPKLEGYVPVISWVQAGS-------------- 132
Query: 115 WNTVGVPEIRSPHNGIY--AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
W V + S A + + + SM P Y I+ ++ + GD ++
Sbjct: 133 WTEVCNVDAVSEEMVPRPPACSDRTFALRVKGQSMAPKYEPDLIIYVDPEVLPFDGDDVV 192
Query: 173 -IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+ + + K + G L + N +P +
Sbjct: 193 AVLTDSNEATFKQFVEEPGDDKMLKARNPSWPDPYIP 229
>gi|215484235|ref|YP_002326462.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294]
gi|213987961|gb|ACJ58260.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294]
Length = 230
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-----AIQTQDTRHKTQD 144
IP+L + +G W+ V + SPH+ Y Q
Sbjct: 98 IPVLDYVQAGF--------------WHEVAY-DGSSPHSYTYTDYVSCSPESIFSVIVQG 142
Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK----VLISRRGRSI-DLMSLN 199
SM P +++GD+LI++++I G ++ + + + K + GR + +L+ +N
Sbjct: 143 KSMEPDFKEGDMLIVDASINPKPGSYVIAQNGSHEATFKKYRVLAHDEYGRDVFELIPIN 202
Query: 200 CCYPVDTVEMSDIEWIARIL 219
+P + DI RI+
Sbjct: 203 SDFPTLSSVTHDI----RII 218
>gi|330992626|ref|ZP_08316572.1| phage transcriptional regulator and peptidase [Gluconacetobacter
sp. SXCC-1]
gi|329760308|gb|EGG76806.1| phage transcriptional regulator and peptidase [Gluconacetobacter
sp. SXCC-1]
Length = 287
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 20/173 (11%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
ESI + A+ + + DG T + P +G G D G
Sbjct: 126 ESISRAERAS-------MPVHDDDGAITVHEYDISP-----QAGGGAIVDHTACGDGEGH 173
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
T+ I Y T + SM P + GD +++++ ++ D + +
Sbjct: 174 PTLESWRIPRNFIRNYLPDTAGLAIIRVTGNSMEPEFLAGDRVLVDTGHRIPSPDGVYVL 233
Query: 175 PRTGDIVAKVL----ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL--WA 221
+V K L SR R I ++S+N YPVD V+ SD+ R++ W
Sbjct: 234 WNGMGVVIKQLMLVPNSRPPR-IRIISVNPTYPVDEVDASDLVINGRVVGKWV 285
>gi|324115562|gb|EGC09501.1| helix-turn-helix protein [Escherichia coli E1167]
Length = 228
Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 30/224 (13%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAAT----------N 66
E+ ++ + LA K GL S +K E + R + I K+L + N
Sbjct: 13 EKAGMSQAQLAEKIGLSQQSV--AKIENGETLQPR--KIKEIAKVLGVSQKWLQLGIEDN 68
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+I L+ IP+L S G + + W P R+
Sbjct: 69 ASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAE-IVESAIDW----FPLRRAD 123
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDIV-AK 183
+ K S+LP+ GD++ + + + + GD L R G ++ K
Sbjct: 124 LRKSGVCASNAKIVKIWGNSLLPVLNNGDLVAVDISQTVPIRDGD--LYAVRDGVLLRVK 181
Query: 184 VLISRRGRSIDLMSLN-CCYPVDTV----EMSDIEWIARILWAS 222
+LI+ + L S N YP + + + I I R+ W+S
Sbjct: 182 ILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225
>gi|218885456|ref|YP_002434777.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756410|gb|ACL07309.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 261
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+P +P + S GG F+ P G + G
Sbjct: 114 AMPAPHHGDLPPAVHMVPKVRARLSAGGGSFEVQAMPVGGQ----PFAHAWLARKGT--- 166
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM P R GD ++++ A + ++ ++ K ++ +
Sbjct: 167 PSAMVLMDVVGDSMEPEIRDGDTVLVDRATEDLRFGQVYAVGLEDAVLVKRVMR-TPDGL 225
Query: 194 DLMSLNCCYPVDTVEMSDIEW---IARILW 220
L+S N Y V ++E I R++W
Sbjct: 226 ALVSDNPAYSPIRVRGDELEQFRVIGRVVW 255
>gi|114797550|ref|YP_760490.1| LexA repressor [Hyphomonas neptunium ATCC 15444]
gi|122942416|sp|Q0C1A3|LEXA_HYPNA RecName: Full=LexA repressor
gi|114737724|gb|ABI75849.1| LexA repressor [Hyphomonas neptunium ATCC 15444]
Length = 227
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 15/147 (10%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
L + G + IPL+ +GS + + V P + +A+
Sbjct: 88 ALVTNQGAEAPRIAGMIPLVGRIAAGS------PISAIQQENGQVASPGGLPEGDDYFAL 141
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ Q SM+ GD +IL GD ++ + K L + S
Sbjct: 142 E-------VQGDSMIQAGILNGDTVILKRTNTAQTGDIVVALIDGEEATLKRLRRKGA-S 193
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ L + N + +E R++
Sbjct: 194 VALEAANPAFETRIFGPDRVEVQGRLV 220
>gi|148555124|ref|YP_001262706.1| putative phage repressor [Sphingomonas wittichii RW1]
gi|148500314|gb|ABQ68568.1| putative phage repressor [Sphingomonas wittichii RW1]
Length = 250
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-- 173
+ + P GIYA + SM P Y G+ ++ D +L+
Sbjct: 139 DQLRRPFRLIGRPGIYA-------FYFEGDSMEPKYSPGEPAFVDGNKPPVVMDYVLVQL 191
Query: 174 KPRTGD------IVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARILWAS 222
+ GD ++AK L+ R ++L N P+ V I + +IL +S
Sbjct: 192 RRPEGDDETIHTVLAKRLVKRTAAYVELEQFNP--PMRFKVPREQIARMHKILQSS 245
>gi|283954061|ref|ZP_06371586.1| hypothetical protein C414_000080049 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794340|gb|EFC33084.1| hypothetical protein C414_000080049 [Campylobacter jejuni subsp.
jejuni 414]
Length = 224
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILN 160
+ + G N + EI Y I T+ K SM P GDI+ ++
Sbjct: 85 AAGY--GATNNQLEYTEITISKKFAYEALDLPISTKLDIIKIIGDSMEPFVHSGDIIAVD 142
Query: 161 SAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDI 212
V GD ++I G+I K L+ + I L S+N Y + + I
Sbjct: 143 ITKNKLELVKNGDIVVINL-DGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVISVEQI 198
>gi|21233670|ref|NP_639968.1| UV protection and mutation protein [Proteus vulgaris]
gi|11245982|gb|AAG33672.1| MucA [IncT plasmid Rts-1]
gi|21202854|dbj|BAB93570.1| UV protection and mutation protein [Proteus vulgaris]
Length = 145
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 9/108 (8%)
Query: 106 SGVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAI 163
FP+ W + + H + + SM GD+L+++ +
Sbjct: 24 PAGFPSPAAGWEEAEL----NLHTLVVTHPASTYFLRVTGDSMQDARIHSGDVLVVDRSE 79
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +++ + K LI R LM +N YP +
Sbjct: 80 TPEQGS-IVVASIDNEFTVKKLILRP--RSCLMPMNPAYPPIYFDPES 124
>gi|83858367|ref|ZP_00951889.1| LexA repressor [Oceanicaulis alexandrii HTCC2633]
gi|83853190|gb|EAP91042.1| LexA repressor [Oceanicaulis alexandrii HTCC2633]
Length = 227
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 19/156 (12%)
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
TN + E+P+L +G + ++ + + VP
Sbjct: 83 TNVVSADFGSSVSDE----RSHGVEVPVLGRIAAGV------PIEAIQHETDRLPVPAEM 132
Query: 125 SPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+A++ SM GD++I+ N GD ++ + K
Sbjct: 133 ISGGEHFALE-------VHGDSMIEAGILDGDLVIIKRGDTANTGDIVVALVHDEEATLK 185
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
L ++G SI L + N Y ++++ R++
Sbjct: 186 KL-RKKGGSIALEAANPAYETRIFGPNEVKVQGRLV 220
>gi|167856791|ref|ZP_02479443.1| putative prophage repressor CI [Haemophilus parasuis 29755]
gi|167852086|gb|EDS23448.1| putative prophage repressor CI [Haemophilus parasuis 29755]
Length = 217
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 42/191 (21%)
Query: 48 GRNRWPSTESIFKILAATNE---------TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
GR R P+ + +++ T TI T+ KK + PL+ +
Sbjct: 40 GR-RMPNVNEVAQMINLTGVNKVILNGDGTIEDFDPNITP---TSVKKSRAYPLVSSIQA 95
Query: 99 G----SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
G + F DS + + + P + SM P + +G
Sbjct: 96 GMWTETYDFRDSEGY------DYIDTEIDAGPDAFF---------LRVSGMSMEPKFSEG 140
Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAK---VLISRRGR---SIDLMSLNCCYPVDTVE 208
D+++++ + + GD + G+ K L +L+ LN +P +
Sbjct: 141 DLVLIDVRKRPHPGDFVAAVNGNGEATLKRYRELGELSPSGNPHFELVPLNQDFPTLSSM 200
Query: 209 MSDIEWIARIL 219
DI RI+
Sbjct: 201 KQDI----RII 207
>gi|114764299|ref|ZP_01443527.1| LexA repressor [Pelagibaca bermudensis HTCC2601]
gi|114543247|gb|EAU46264.1| LexA repressor [Roseovarius sp. HTCC2601]
Length = 231
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 8/165 (4%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKW 115
I K+ + R + K P+ + + P +
Sbjct: 66 IVKLPESLGGKPAGFTPQVIDGDRPDSRPAKAQPVSN-AEALELPLLGRIAAGEPIQSIA 124
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
+ P + + + + + SM GD++I+ + GD ++ +
Sbjct: 125 DN---PPNIAVPGAMLSSNAHHYALEVKGDSMIEAGIHDGDVVIIRETSSASNGDIVVAQ 181
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + G +I L + N Y + + ++ R++
Sbjct: 182 IEGYEATLKRFRRQ-GDTIVLEAENAAYEPRVLPLGAVKVQGRLV 225
>gi|291614655|ref|YP_003524812.1| phage repressor [Sideroxydans lithotrophicus ES-1]
gi|291584767|gb|ADE12425.1| putative phage repressor [Sideroxydans lithotrophicus ES-1]
Length = 130
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
SM P + +G+IL++ V+ G ++ + + + + L L +L
Sbjct: 32 ALMVLGDSMAPEFTEGEILVIEMGAPVSDGSFVVGEANE-EFIFRQLRRGDHGGWQLHAL 90
Query: 199 NCCYPVDTVE 208
N YP +
Sbjct: 91 NPAYPDIAIA 100
>gi|255319235|ref|ZP_05360452.1| phage repressor [Acinetobacter radioresistens SK82]
gi|255303628|gb|EET82828.1| phage repressor [Acinetobacter radioresistens SK82]
Length = 247
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K +P+L + +G+ W + +P + +
Sbjct: 110 DGLKRVPILTYVQAGN--------------WREAIQMPSDNFIFVSVD-VSPNSFGAYVV 154
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV----LISRRGRSIDLMSLN 199
SMLP +R GD++I+++ ++ D ++ + G K + DL+ LN
Sbjct: 155 GDSMLPDFRDGDLIIIDTQVKPQPTDFVMAEDPEGITFKKYRSRGINEEGKEVFDLVPLN 214
Query: 200 CCYPVDTVEMSDIEWIARIL 219
+P+ + S +E I ++
Sbjct: 215 PDFPIIRSDRSRVEIIGTVV 234
>gi|237746102|ref|ZP_04576582.1| phage repressor [Oxalobacter formigenes HOxBLS]
gi|229377453|gb|EEO27544.1| phage repressor [Oxalobacter formigenes HOxBLS]
Length = 227
Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + +M+P + KGD +I++ AI GD ++ K GD + +L R +
Sbjct: 121 LSAHSFALEITGLAMMPEFEKGDWVIVDPAIAPEPGDFVVAKY--GDKMNVILRKYRPKG 178
Query: 193 I--------DLMSLNCCYPVDTVEMSDIE 213
+ +L++LN YP + +E
Sbjct: 179 LDLSHTMLFELIALNDDYPRIRSHLDAVE 207
>gi|148727133|ref|YP_001285627.1| putative cI repressor [Aeromonas phage phiO18P]
gi|110349268|gb|ABG73156.1| putative cI repressor [Aeromonas phage phiO18P]
Length = 238
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 45/230 (19%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
I A R +++ SGL KR+ EG + I + L
Sbjct: 29 IRAFARRADMSDSGL--------------KRYLYEG-----TIPPIDRALNLARAGGVTF 69
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------PTGNKWNTVGVPE 122
L F G P+ P S GF + F G+ N P
Sbjct: 70 DWLVFGIGEAGSSARTNPPIA--PASDVQGFQVTEEFTTIPAYQVFASAGHGANITDEPL 127
Query: 123 IRSPHNGIYAIQTQDTR------HKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIK 174
++ + + + SM P GD++++ + D L +
Sbjct: 128 AEPMAFRTDWLRREGFDPAKMAVIRAKGDSMEPTINDGDVILVRLKNGEAPR--DGLYVL 185
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWA 221
G + K L G + ++S N Y + E+++++ + R++WA
Sbjct: 186 RLDGGLFVKRLQFDLGG-VRIISDNPLYKSRDLSKAELAELDLVGRVVWA 234
>gi|241663869|ref|YP_002982229.1| phage repressor [Ralstonia pickettii 12D]
gi|240865896|gb|ACS63557.1| putative phage repressor [Ralstonia pickettii 12D]
Length = 292
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 19/121 (15%)
Query: 106 SGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
GN T +P + A K + SM P D +++
Sbjct: 161 DVALSAGNGRETWHIEEKEPLPFQADYIRRLDASPKNLVAVKVRGDSMEPRLFDDDTVVV 220
Query: 160 NSAIQVNCGDR-------LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ DR + G+++ K L SID++S N Y V+ +
Sbjct: 221 D------RADRRIPASGGVFAIVYAGEMLVKRLFKLPDGSIDIVSDNPKYKSLVVQPDQL 274
Query: 213 E 213
E
Sbjct: 275 E 275
>gi|241765209|ref|ZP_04763193.1| SOS-response transcriptional repressor, LexA [Acidovorax
delafieldii 2AN]
gi|241365138|gb|EER60010.1| SOS-response transcriptional repressor, LexA [Acidovorax
delafieldii 2AN]
Length = 224
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD+L + + + G ++ + D+ K L R SI+L+ N YP+ V+ ++
Sbjct: 150 DGDLLAVQATREARNGQIVVARLGD-DVTVKRL-RRTASSIELLPENPDYPIIVVQPGEV 207
>gi|254449351|ref|ZP_05062795.1| prophage MuMc02, peptidase, family S24 [gamma proteobacterium
HTCC5015]
gi|198261055|gb|EDY85356.1| prophage MuMc02, peptidase, family S24 [gamma proteobacterium
HTCC5015]
Length = 230
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 24/175 (13%)
Query: 62 LAATNETI------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
L A ++ + +PL + G
Sbjct: 61 LEAIGVDWRYVMNGGDVVGIREPAAAYDYSDYVRLPLFDVQAAAGNGL-------VAQAE 113
Query: 116 NTVGVPEIRSP--HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRL 171
V N + + SM+P GD+++LN V D +
Sbjct: 114 ELVEFLSFDRDWLRNALKVSPKDLVMIEVDGESMVPTLSPGDVIMLNTLDTGVVR--DGI 171
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW-----IARILWA 221
+ G ++ K L S G ++++S N +P T++ D+ I R++W+
Sbjct: 172 YVLLVDGALLVKRLQSLPGGVLNVISDNQAFPTWTMKRDDLGAETQRVIGRVVWS 226
>gi|104783161|ref|YP_609659.1| transcriptional regulator [Pseudomonas entomophila L48]
gi|95112148|emb|CAK16875.1| putative transcriptional regulator [Pseudomonas entomophila L48]
Length = 248
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 52/257 (20%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESI 58
M + + + + + +RH L+P+ L R+ G+ ++ ++ S++ PS + +
Sbjct: 1 MHAMQKRNVASVLRALLDRHGLSPTELHRRTGVPQSTLSRILSEKIVD------PSDKHV 54
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
+I + QL + +D P + + V
Sbjct: 55 SRIAEYFGVSTDQLRGRAELGEPREAAALTPV----HAALSDISLWDDE-TPVED--DEV 107
Query: 119 GVPEIRS----PHNGIYAIQTQDTR---------------------HKTQDTSMLPLYRK 153
VP +R +G + I+ + + SMLP+ R
Sbjct: 108 SVPFLREVELAAGSGRFVIEESENARLRFGKRSLRHNGVQFDHAKCVTVRGNSMLPVLRD 167
Query: 154 GDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD---- 205
G + +N+ + GD L G + K + I L S N D
Sbjct: 168 GATVGVNTGKCTIGDIIDGD-LYAINHNGQLRVKQVYRLPTG-IRLRSFNRDEHPDEDYS 225
Query: 206 --TVEMSDIEWIARILW 220
++ I + + W
Sbjct: 226 FQQMQEEQISLLGHVFW 242
>gi|153212036|ref|ZP_01947853.1| repressor protein C2 [Vibrio cholerae 1587]
gi|124116832|gb|EAY35652.1| repressor protein C2 [Vibrio cholerae 1587]
Length = 225
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+ E++ P+L + + G + P N + +P G Y +
Sbjct: 85 AQVGPPVEQKCPILSWVQA---GMWTEMGSPVSN-EDVELMPCPVKCSAGTYVL------ 134
Query: 140 HKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMS 197
+ + SM Y +GD L ++ I+ GD ++ + K I GR + L +
Sbjct: 135 -RVRGDSMRHEYEEGDYLFVDPTKIEPANGDYVIAMLEDSKEATFKQYIELDGRKM-LKA 192
Query: 198 LNCCYPV 204
N YP
Sbjct: 193 TNPDYPP 199
>gi|99080976|ref|YP_613130.1| LexA repressor [Ruegeria sp. TM1040]
gi|122984325|sp|Q1GHJ8|LEXA_SILST RecName: Full=LexA repressor
gi|99037256|gb|ABF63868.1| SOS-response transcriptional repressor, LexA [Ruegeria sp. TM1040]
Length = 241
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
Q + + SM+ GD++++ + GD ++ + K + GR I
Sbjct: 151 GQHYALEVRGDSMIDAGINDGDVVVIRETDAADNGDIVVALVEGHEATLKRFERK-GRMI 209
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
+L + N YP + ++ R++
Sbjct: 210 ELHAANPAYPTRSYTEDQVKVQGRLV 235
>gi|94263341|ref|ZP_01287156.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
gi|93456296|gb|EAT06426.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
Length = 145
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + + A + SM+ DIL+++ +++
Sbjct: 29 SAGFPS-PAEDYLE--GQLDLNQLMVAHPAATFFVRVAGDSMINAGIHHNDILVVDRSLE 85
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
G R++I G++ K L+ + G + LM+ N YP
Sbjct: 86 PTNG-RVVIAVLNGELTVKRLVQKNG-TARLMAENPNYPP 123
>gi|94266498|ref|ZP_01290188.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
gi|93452885|gb|EAT03399.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
Length = 145
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + + A + SM+ DIL+++ +++
Sbjct: 29 SAGFPS-PAEDYLE--GQLDLNQLMVAHPAATFFVRVAGDSMINAGIHHNDILVVDRSLE 85
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
G R++I G++ K L+ + G + LM+ N YP
Sbjct: 86 PTNG-RVVIAVLNGELTVKRLVQKNG-TARLMAENPNYPP 123
>gi|254425161|ref|ZP_05038879.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
gi|196192650|gb|EDX87614.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
Length = 156
Score = 48.4 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP--LYRKGDILILNSAI 163
S FP+ + + + + + + SM P ++ GD+LI++ +I
Sbjct: 36 SAGFPSPAD-DYIE--KTLDLNAHLIENPAATFFARACGDSMEPGGIF-DGDLLIIDRSI 91
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+ G R+++ G+++ K L + R++ L + N YP
Sbjct: 92 EPRNG-RVVVVALNGEMLVKRLHTTLDRTV-LSADNRNYPP 130
>gi|198385590|gb|ACH86126.1| PrtR [Pseudomonas phage DVM-2008]
Length = 267
Score = 48.4 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 27/226 (11%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M + + + + ++H ++P+ L R+ G+ ++ ++ + G+ PS + I K
Sbjct: 15 MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSR----ILSGKIVDPSDKHISK 70
Query: 61 ILAATNETICQL---LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------- 110
I + QL D+ + ++ E+ + + D P
Sbjct: 71 IAEYFAVSTDQLRGRADVVPAGNARRDEPHSELKDISLWDDETPVEEDEVSVPFLREVEL 130
Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSA- 162
G+ + E S G +++ + + SMLP+ R G + +N+
Sbjct: 131 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 190
Query: 163 ---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
+ GD L G + K L I L S N D
Sbjct: 191 CGIGDIVDGD-LYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPD 234
>gi|329768682|ref|ZP_08260166.1| LexA repressor [Gemella haemolysans M341]
gi|328836396|gb|EGF86061.1| LexA repressor [Gemella haemolysans M341]
Length = 224
Score = 48.4 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
+ P + + E+ Q + + + SM P GD +I+
Sbjct: 105 AAGIPISAVEDILDYEEVPQSWEN----QGEFFGLRIKGDSMKPDINDGDTVIVRQQSTA 160
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
N GD ++ D K + G I L+S N Y ++
Sbjct: 161 NNGDVVIALVNGDDATCKKF-EKLGNGIMLISNNSEYSPMYFSNEEV 206
>gi|330807816|ref|YP_004352278.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375924|gb|AEA67274.1| putative Transcription factor, Xre family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 247
Score = 48.4 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 27/226 (11%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M + + + + ++H ++P+ L R+ G+ ++ ++ + G+ PS + I K
Sbjct: 1 MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSR----ILSGKIVDPSDKHISK 56
Query: 61 ILAATNETICQL---LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------- 110
I + QL D+ + ++ E+ + + D P
Sbjct: 57 IAEYFAVSTDQLRGRADVVPAGNARRDEPHSELKDISLWDDETPVEEDEVSVPFLREVEL 116
Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSA- 162
G+ + E S G +++ + + SMLP+ R G + +N+
Sbjct: 117 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 176
Query: 163 ---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
+ GD L G + K L I L S N D
Sbjct: 177 CGIGDIVDGD-LYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPD 220
>gi|218890289|ref|YP_002439153.1| putative c repressor [Pseudomonas aeruginosa LESB58]
gi|218770512|emb|CAW26277.1| putative c repressor [Pseudomonas aeruginosa LESB58]
Length = 237
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ + SM PL GD ++++ + + + + + AK + + + ++S
Sbjct: 146 SAVRIGGDSMEPLLSDGDTVMIDHSCNEVRDEAVYVIRLDDHLYAKRVQRQINGGLAIIS 205
Query: 198 LNCCYPVDTVEMSDIEW---IARILWA 221
N Y V D+E I R++W+
Sbjct: 206 ANPAYQTMFVSKQDLEAVDIIGRVVWS 232
>gi|325272250|ref|ZP_08138668.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324102622|gb|EGC00051.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 142
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM--L 148
P F FP+ + + I A K + SM
Sbjct: 9 PTGGTESFPQYSFHVPAGFPSPAA-DHLEGHISLDELFDIRA--PHVYLVKVEGDSMQGA 65
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+Y GD++I++ + GD ++I + V K L R G I L S N YP +
Sbjct: 66 GIY-SGDLVIVDRGREAEHGD-IVIAAVNCEPVCKRLHRRDGVVI-LKSENPAYPARYIM 122
Query: 209 MSD--IEW 214
D + W
Sbjct: 123 EGDDFVVW 130
>gi|258543098|ref|YP_003188531.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-01]
gi|256634176|dbj|BAI00152.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-01]
gi|256637236|dbj|BAI03205.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-03]
gi|256640288|dbj|BAI06250.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-07]
gi|256643345|dbj|BAI09300.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-22]
gi|256646400|dbj|BAI12348.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-26]
gi|256649453|dbj|BAI15394.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-32]
gi|256652439|dbj|BAI18373.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256655497|dbj|BAI21424.1| phage transcriptional regulator and peptidase [Acetobacter
pasteurianus IFO 3283-12]
Length = 249
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Query: 96 PPSGSGGFFDS-GVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
P +G+G + D + +P+ + + SM P
Sbjct: 117 PQAGAGAYIDEHCGLAESHVVLGAWEIPKNYIESYLPNS--ESLAIVRVVGNSMEPELNA 174
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI---SRRGRSIDLMSLNCCYPVDTVEMS 210
GD +++++ ++ D + + IV K L + ++S+N YP D +S
Sbjct: 175 GDRVLVDTDHKIPTPDGMYVIWNGLGIVIKQLQVIPRSNPPRVRIISVNPTYPADEALLS 234
Query: 211 DIEWIARIL 219
+I R++
Sbjct: 235 EIVVNGRVV 243
>gi|260426266|ref|ZP_05780245.1| LexA repressor [Citreicella sp. SE45]
gi|260420758|gb|EEX14009.1| LexA repressor [Citreicella sp. SE45]
Length = 231
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 8/165 (4%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP--PSGSGGFFDSGVFPTGNKW 115
I K+ + + P+ G + P +
Sbjct: 66 IVKLPESLGGRPAGFAPKVIDGDIPDSRPAAARPVATIEAMELQVLGRI-AAGEPIQSIA 124
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
+ P + G+ + + + + SM GD++I+ GD ++ +
Sbjct: 125 DN---PPGIAVPTGMLSANARHYALEVRGDSMIEAGINDGDVVIIRETSSAENGDIVVAQ 181
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + G +I L + N Y + + ++ R++
Sbjct: 182 IEGYEATLKRFRRK-GDAIVLEAANPAYEPRVLPVGSVKVQGRLV 225
>gi|6491870|gb|AAF14052.1|AF039836_1 MucA [IncT plasmid R394]
Length = 145
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 9/108 (8%)
Query: 106 SGVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAI 163
FP+ W + + H + + SM GD+L+++ +
Sbjct: 24 PAGFPSPAAGWEEAEL----NLHTLVVTHPASTYFLRVTGDSMQDARIHSGDVLVVDRSE 79
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +++ + K LI R LM +N YP +
Sbjct: 80 TPEQGS-IVVASIDNEFTVKKLILRP--RPCLMPMNPAYPPIYFDPES 124
>gi|303246530|ref|ZP_07332809.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
fructosovorans JJ]
gi|302492240|gb|EFL52115.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
fructosovorans JJ]
Length = 140
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK-----GDILILNS 161
FP+ + + + + + + SM R GDIL+++
Sbjct: 25 AGFPS-PAEDYID--KKLDLNEQLVRHPAATFFVRVDGDSM----RDAGVASGDILVVDR 77
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
A++ G ++I G++ K L + G+ + L+ N Y V
Sbjct: 78 AVEPRDG-HIVIAALDGELTVKRLRRKNGQVL-LVPENPDYAPVAVGPEA 125
>gi|218547977|ref|YP_002381768.1| Cro/CI family transcriptional regulator [Escherichia fergusonii
ATCC 35469]
gi|218355518|emb|CAQ88129.1| putative transcriptional regulator, Cro/CI family from phage origin
[Escherichia fergusonii ATCC 35469]
Length = 228
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 58 IFKILAAT----------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
I K+L + N +I L+ IP+L S G
Sbjct: 50 IAKVLGVSQKWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAE- 108
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQV 165
+ + W P R+ + K S+LP+ GD++ + + + +
Sbjct: 109 IVESAIDW----FPLRRADLRKSGVCASNAKIVKIWGNSLLPVLNNGDLVAVDISQTVPI 164
Query: 166 NCGDRLLIKPRTGDIV-AKVLISRRGRSIDLMSLN-CCYPVDTV----EMSDIEWIARIL 219
GD L R G ++ K+LI+ + L S N YP + + + I I R+
Sbjct: 165 RDGD--LYAVRDGVLLRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVF 222
Query: 220 WAS 222
W+S
Sbjct: 223 WSS 225
>gi|290475034|ref|YP_003467918.1| putative phage repressor (fragment) [Xenorhabdus bovienii SS-2004]
gi|289174351|emb|CBJ81145.1| Putative phage repressor (fragment) [Xenorhabdus bovienii SS-2004]
Length = 116
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+A+ + SM P ++ GDI++++ + N G+ ++ + K
Sbjct: 17 SERAFAL-------RIDGDSMEPDFKAGDIVVIDPEVTPNPGEFVVAASYEREATFKKYR 69
Query: 187 SRR-----GRSIDLMSLNCCYPVDTVEMSDIEWI-----ARI 218
+ +L+ LN YP+ + I I RI
Sbjct: 70 PITINIDGTQHFELIPLNNDYPILDNQRIKITIIGTMVEHRI 111
>gi|160897980|ref|YP_001563562.1| peptidase S24/S26 domain-containing protein [Delftia acidovorans
SPH-1]
gi|160363564|gb|ABX35177.1| peptidase S24 and S26 domain protein [Delftia acidovorans SPH-1]
Length = 149
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-----SRR 189
+ SM P +R+GD ++++ ++ GD + + + + +
Sbjct: 51 VHAFFLQLAGNSMTPEFREGDRVLIDPGVKPQPGDYVAAQVGKTEALFRKYRLHGNDRLG 110
Query: 190 GRSIDLMSLNCCYPV 204
+L+ LN +PV
Sbjct: 111 NEVFELIPLNQDHPV 125
>gi|84687233|ref|ZP_01015114.1| LexA repressor [Maritimibacter alkaliphilus HTCC2654]
gi|84664821|gb|EAQ11304.1| LexA repressor [Rhodobacterales bacterium HTCC2654]
Length = 230
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 21/166 (12%)
Query: 59 FKILAATN-------ETICQLLDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFP 110
+ + T R + + +PL G + P
Sbjct: 61 ARAIEVTRLPDALDPSGKAGFEPRVIDGDRPDSRPAQAMPLEGSAMDLPLLGRI-AAGTP 119
Query: 111 TGNKWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
+ V VP + YA++ + SM+ GD++I+ +
Sbjct: 120 IEAIEDGQSHVSVPGAMVGNGKHYALE-------VKGDSMINAGINSGDVVIIRETSHAD 172
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD ++ + + K R G I L + N + + I
Sbjct: 173 NGDIVVAQVDGYEATLKRF-RRAGDMIALEAANPAFETRILPQGQI 217
>gi|319957707|ref|YP_004168970.1| phage repressor [Nitratifractor salsuginis DSM 16511]
gi|319420111|gb|ADV47221.1| putative phage repressor [Nitratifractor salsuginis DSM 16511]
Length = 218
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 31/82 (37%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ SM P G I+ ++ D + + + K + R ++L+S
Sbjct: 131 EAIHVEGESMEPTLPDGSIVFIDREQTDPSKDGIFVAATGNGLFIKRIRRRADGMVELIS 190
Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
N Y + + +E + R++
Sbjct: 191 DNPLYTPEVLSPDQVEIVGRVV 212
>gi|283954007|ref|ZP_06371533.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 414]
gi|283794490|gb|EFC33233.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 414]
Length = 222
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + L +A++ G++P +FN K + I L N +I
Sbjct: 25 DILASEGKRELKTKDIAKELGINPDTFNSMKFRNPIPYPQ------ILNFLQERNISINY 78
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNGI 130
+ + + +I Y + GG G + + ++
Sbjct: 79 FFYGSSPKEQLESENKYKILKFYKTNASLGG---------GGINDLIDYSKLIIDEKLLS 129
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ SM PL + G I I++ +I R G + K ++ +
Sbjct: 130 FFGSKNCEFITCYGESMEPLIKDGSICIVDRNKTFKDKSICVINTRDG-LFIKQVLKQDD 188
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 189 GVI-LHSLNPLYED 201
>gi|78184864|ref|YP_377299.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9902]
gi|78169158|gb|ABB26255.1| UmuD protein. Serine peptidase. MEROPS family S24 [Synechococcus
sp. CC9902]
Length = 147
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + K SM GD+L+++ ++
Sbjct: 31 PAGFPSPAD-DYVEM--GIDLNEQLIRHPGSTFFLKVSGESMTEAGIHDGDLLVVDRSLD 87
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G R+++ G K L GR + L + + YP ++
Sbjct: 88 PRPG-RVVVAVLDGAFTLKRLARHHGR-LRLEAAHPDYPPLELQH 130
>gi|90021432|ref|YP_527259.1| LexA repressor [Saccharophagus degradans 2-40]
gi|123396174|sp|Q21JT2|LEXA_SACD2 RecName: Full=LexA repressor
gi|89951032|gb|ABD81047.1| SOS-response transcriptional repressor, LexA [Saccharophagus
degradans 2-40]
Length = 201
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
S G + + IPL+ +G+ + N + VP Y ++ Q
Sbjct: 63 SRGIRLPETIQGIPLIGRVAAGN------PILAEQNIEDYCDVPPDFFYPQANYLLKVQG 116
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLM 196
+ GD+L ++S QV GD ++ + ++ K R +I L+
Sbjct: 117 MSMRDAG------ILDGDLLAVHSTTQVKNGDIVVARIED-EVTVKRFKRERNNATIQLL 169
Query: 197 SLNCCYPVDTVEMSD 211
N + + V++ D
Sbjct: 170 PENPDFNIIEVDLRD 184
>gi|116070738|ref|ZP_01468007.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. BL107]
gi|116066143|gb|EAU71900.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. BL107]
Length = 147
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + K SM GD+L+++ ++
Sbjct: 31 PAGFPSPAD-DYVEM--GIDLNEQLIRHPGSTFFLKVSGESMTEAGIHDGDLLVVDRSLD 87
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G R+++ G K L GR + L + + YP ++
Sbjct: 88 PRPG-RVVVAVLDGAFTLKRLARHHGR-LRLEAAHPDYPPLELQH 130
>gi|317051665|ref|YP_004112781.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5]
gi|316946749|gb|ADU66225.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum
indicum S5]
Length = 150
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + + SM+ R GDILI++ +++
Sbjct: 26 PAGFPS-PAQDYVE--RTLDLNELCIRNAPATFFVRAEGDSMINAGIRPGDILIVDRSLE 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
D ++ K G++ K+L +I L+ +N Y
Sbjct: 83 PRHKDIVIAKIH-GELTVKLLH--TTPTISLVPMNPNYQP 119
>gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
11170]
Length = 196
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 40/211 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
+ ++ LA+ G++ ++ +R + W E + +IL + L
Sbjct: 13 KDQGMSQYALAKLLGVNQSTIAYYERGRNTPKP-W-IVEDLARILNVS----AAFLLYGR 66
Query: 78 SDGRTTEKKEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ L P+ GF P G
Sbjct: 67 ERTDPLVPVVGRVGLGGQVTLAPAEPIGF---TELPPGAS-------------------- 103
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-----GDRLLIKPRTGDIVAKVLIS-R 188
++ + ++ P+YR GDI+ + G +++ G + K++ R
Sbjct: 104 SRTEALIVEGDALWPVYRAGDIVFFSEEDVHRSPEDLHGRDCVVRLADGTTLIKLIKRGR 163
Query: 189 RGRSIDLMSLN-CCYPVDTVEMSD-IEWIAR 217
L S N +E + I W+ R
Sbjct: 164 TKALFTLASYNAPDIEDIALEKAAPIRWVKR 194
>gi|255318670|ref|ZP_05359900.1| Peptidase S24-like domain protein [Acinetobacter radioresistens
SK82]
gi|262379502|ref|ZP_06072658.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255304271|gb|EET83458.1| Peptidase S24-like domain protein [Acinetobacter radioresistens
SK82]
gi|262298959|gb|EEY86872.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 232
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ + P+L + GS + ++W +P + + +Q
Sbjct: 88 PRVRARMAPVLSWVQVGSFTNVAAVDMSEVSQW----LPLPEDECSNCFFLQ-------V 136
Query: 143 QDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
Q S P + +GD +++N + GD ++++ K++I G+ L +LN
Sbjct: 137 QGISNFPDFIEGDYIVVNPDAYYGDMQSGDIIVVRRGEDATFKKLVIETNGKRY-LQALN 195
Query: 200 CCYPVDTVEMSD 211
+ + +E +
Sbjct: 196 PDFKPNIIEFDE 207
>gi|323700030|ref|ZP_08111942.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio sp. ND132]
gi|323459962|gb|EGB15827.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
desulfuricans ND132]
Length = 153
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + + + SM+ GD+L+++ ++
Sbjct: 37 PAGFPS-PAEEYLE--KRLDLNEHLVTRPEATYFVRVSGDSMIGAGIHHGDLLVVDRSLD 93
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
G+ ++I G+ K L + ++L N Y
Sbjct: 94 PRPGN-VVIALVEGEFTVKRL-RKSPLGLELAPENPEY 129
>gi|317051151|ref|YP_004112267.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5]
gi|316946235|gb|ADU65711.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum
indicum S5]
Length = 218
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM P GDIL+++ Q D + I G++V K + S+ +MS N
Sbjct: 128 EVCGDSMEPTIYAGDILLVDQRFQKVGNDGIYILRLHGELVVKRVQRLIDGSLRIMSDNK 187
Query: 201 CYPVDTVEM---SDIEWIARILW-ASQ 223
Y T+ + + ++W ASQ
Sbjct: 188 AYMDQTISAELSEQVCVVGFVVWRASQ 214
>gi|310815580|ref|YP_003963544.1| LexA repressor [Ketogulonicigenium vulgare Y25]
gi|308754315|gb|ADO42244.1| LexA repressor [Ketogulonicigenium vulgare Y25]
Length = 221
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-- 116
+ L P + R + + L G + P
Sbjct: 61 ARALEVVRMP-EMTAHKPAAAARKPQLVASALNTLAAIEVDVMGRI-AAGVPIAAISEVS 118
Query: 117 -TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
V VP+ YA++ Q SM+ + GDI+++ A + GD ++
Sbjct: 119 HQVAVPQGMIGTGNHYALE-------VQGDSMIGIGINDGDIVVIRHADLASNGDIVVAL 171
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + G I L + N Y + + +
Sbjct: 172 VDEAEATLKRFRRQNG-MIALEAANPAYETRLLPEARV 208
>gi|145300731|ref|YP_001143572.1| prophage transcriptional regulator [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853503|gb|ABO91824.1| prophage transcriptional regulator [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 238
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 45/230 (19%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+ A R +++ SGL KR+ EG + I + L
Sbjct: 29 LRAFARRADMSDSGL--------------KRYLYEG-----TIPPIDRALNLARAGGVTF 69
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------PTGNKWNTVGVPE 122
L F G + + SG+ G + + F G+ P
Sbjct: 70 DWLVFGIGDGVNSPLSHV--SHDATSGAQGSYRADEFTTISAYQVEASAGHGSQITDEPL 127
Query: 123 IRSPHNGIYAIQTQDTR------HKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIK 174
++ + + + SM P GD++++ + G +L
Sbjct: 128 AEPMAFRSDWLRREGFEPAKMAVIRAKGDSMEPTINDGDVILIRLKNGEAPRDGLYVL-- 185
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWA 221
G + K L G I ++S N Y + E+++++ + R++WA
Sbjct: 186 RLEGGLFVKRLQFDLGG-IRVISDNPLYKSRDLNKAELAELDLVGRVVWA 234
>gi|163731991|ref|ZP_02139437.1| LexA repressor [Roseobacter litoralis Och 149]
gi|161394289|gb|EDQ18612.1| LexA repressor [Roseobacter litoralis Och 149]
Length = 233
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 41/209 (19%)
Query: 42 KRFGIEGRNRWPSTESIFKILAA-TNETICQLLDLPFSDG--RTTEKKEKEIPLLYFPPS 98
KR +G PS + + + L + I +L+ G R + + I ++ P +
Sbjct: 15 KRVQRDGVP--PSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHRARAIEIVKLPEA 72
Query: 99 ---GSGGFFD---------SGVFPTGN----KWNTVGVPEIRS-----------PHNGIY 131
+ G F P G + V +P + ++
Sbjct: 73 LGGAAQGRFTPRVIEGDKPDAPLPAGAQAVSSADAVSLPLVGRIAAGLPIEAINQNSASV 132
Query: 132 AIQTQ-------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
A+ Q + + SM+ GD++++ + GD ++ + K
Sbjct: 133 AVPGQMLSGKGDHYALEVKGDSMIDAGINDGDVVVIRETSAADNGDIVVALIEDHEATLK 192
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ R G SI L + N Y +
Sbjct: 193 RYMRR-GSSIALEAANPAYETRVFTEDKV 220
>gi|26989752|ref|NP_745177.1| transcriptional repressor pyocin R2_PP [Pseudomonas putida KT2440]
gi|24984646|gb|AAN68641.1|AE016494_1 pyocin R2_PP, transcriptional repressor, CI/C2 family [Pseudomonas
putida KT2440]
Length = 243
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 90 IPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
+PL+ + +G+ + + W + VP S YA++
Sbjct: 114 VPLISWVQAGAWCEAISNFEPYQADSWLSCPVPISDSG----YALKVLGDSMTNPGPGRS 169
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
Y G I+ ++ ++ N GDR++ + PRT ++ KVL+S GR L +N YP
Sbjct: 170 --YPTGCIIFVDPEVEANTGDRVIARVPRTNEVTFKVLVSDAGRQF-LRPINPQYP 222
>gi|126731368|ref|ZP_01747175.1| LexA repressor [Sagittula stellata E-37]
gi|126708279|gb|EBA07338.1| LexA repressor [Sagittula stellata E-37]
Length = 231
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 16/169 (9%)
Query: 58 IFKILAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
I K+ + R T + EI L G + P +
Sbjct: 66 IVKLPESLGGAPAGFSPRVIEGDRPDNTPGRATEINTLDVTELPIMGRI-AAGVPIESIN 124
Query: 116 NT---VGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
+ + VP + G YA++ + SM GD++++ GD
Sbjct: 125 DEPPGIAVPGMMLKGQGRHYALE-------VRGDSMIEAGINDGDVVVIRETSDAADGDI 177
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
++ + + K + G I L + N Y + D+ R++
Sbjct: 178 VVAQIEGYEATLKRFRRK-GEMIVLEAANPAYEPRVLPRGDVNVQGRLV 225
>gi|33865578|ref|NP_897137.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102]
gi|33632747|emb|CAE07559.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102]
Length = 143
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
+ +PL + FP+ + V V ++ + T
Sbjct: 5 HQPLPLQPRRTRLSLPLAGERVA--------AGFPSPAD-DYVEV--GIDLNDQLIRHPT 53
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SML GD+L+++ ++ G R+++ G+ K L+ GR +
Sbjct: 54 STFFLRVSGESMLGAGIHDGDLLVVDRSLDPRPG-RVVVAVLDGEFTLKRLVQHHGR-LR 111
Query: 195 LMSLNCCYPVDTV 207
L + N YP +
Sbjct: 112 LEAANPAYPPLEL 124
>gi|56750016|ref|YP_170717.1| DNA polymerase V [Synechococcus elongatus PCC 6301]
gi|81300358|ref|YP_400566.1| SOS mutagenesis protein UmuD [Synechococcus elongatus PCC 7942]
gi|56684975|dbj|BAD78197.1| DNA polymerase V [Synechococcus elongatus PCC 6301]
gi|81169239|gb|ABB57579.1| UmuD protein. Serine peptidase. MEROPS family S24 [Synechococcus
elongatus PCC 7942]
Length = 186
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + + + + SM+ + GD++I++ +++
Sbjct: 70 SAGFPSPAD-DYIE--QRLDLNRHLIKNPAATFMARVSGDSMIGVGIHDGDVIIVDRSLE 126
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
G +++I G++ K L + + + L + N YP +
Sbjct: 127 PRDG-QIVIAVLNGELTVKRL-RQERQRLFLQAENPNYPDLEI 167
>gi|303257626|ref|ZP_07343638.1| prophage MuSo1, transcriptional regulator, Cro/CI family
[Burkholderiales bacterium 1_1_47]
gi|302859596|gb|EFL82675.1| prophage MuSo1, transcriptional regulator, Cro/CI family
[Burkholderiales bacterium 1_1_47]
Length = 230
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM P +R GD+++++ + D + GD+ K + G ++
Sbjct: 133 EQGYELITASGDSMEPTFRNGDLIVVDRQDRDLKRDGVFCVLVDGDLYVKRVQRIPG-AV 191
Query: 194 DLMSLNCCYPVDTVEMSDIE 213
+S N Y + + ++E
Sbjct: 192 LFISDNSLYRPFEIPIKEVE 211
>gi|300907046|ref|ZP_07124714.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
gi|301304048|ref|ZP_07210165.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
gi|300401193|gb|EFJ84731.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
gi|300840655|gb|EFK68415.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
gi|315257709|gb|EFU37677.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
Length = 237
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL N ++ + + + + E E P+ + G F +
Sbjct: 66 LAKIL---NVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGYKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|254448318|ref|ZP_05061780.1| protein ImpA [gamma proteobacterium HTCC5015]
gi|198262185|gb|EDY86468.1| protein ImpA [gamma proteobacterium HTCC5015]
Length = 160
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
G+ G FP+ + + ++ + A + Q SM GDIL++
Sbjct: 33 AGYSIQGGFPS-PAEDFLE--SRLDLNDLLIARPAATFYLRYQGDSMRDAGLHPGDILVV 89
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEW 214
+ A GD +++ G++ K L +R I L + + +P + + W
Sbjct: 90 DRAESPRHGD-IVVAVVDGEMTCKRLYNR-AGLIRLDAEHPEFPNIELRQDSELVIW 144
>gi|116748371|ref|YP_845058.1| SOS-response transcriptional repressor LexA [Syntrophobacter
fumaroxidans MPOB]
gi|171460792|sp|A0LGS1|LEXA_SYNFM RecName: Full=LexA repressor
gi|116697435|gb|ABK16623.1| SOS-response transcriptional repressor, LexA [Syntrophobacter
fumaroxidans MPOB]
Length = 206
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
IP L +G+ P V +PE A + +
Sbjct: 70 PLHTGAVSIPFLGVVAAGT---------PI----EAVEIPESVEVPESFLA-NGNNFALR 115
Query: 142 TQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM R+GDILI+ + G + ++ G+ K +RG I+L N
Sbjct: 116 VKGDSMIEEGIREGDILIVARQSRAENG-QTVVALVQGEATVKKF-YQRGEEIELRPANS 173
Query: 201 CYPVDTVEMSDIE 213
+E
Sbjct: 174 RMQPIHARADAVE 186
>gi|254498302|ref|ZP_05111042.1| phage repressor [Legionella drancourtii LLAP12]
gi|254352464|gb|EET11259.1| phage repressor [Legionella drancourtii LLAP12]
Length = 198
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFS-DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
R P E I ++ A L+ L T+K + IPL + + +
Sbjct: 21 RTPGPEEIKQLANALEVPAAFLMCLSDEKQENQTKKLSRLIPLFNHHQACDAKHCLNELR 80
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
G+ N V I + ++ K D SM+P +R D L+++S+ Q G+
Sbjct: 81 EQGSSDNAVL---ISVSAALLPTLEGDAFALKMIDDSMMPEFRLNDTLVIDSSAQPKPGN 137
Query: 170 RLLIKPRT-GDIVA---KVLISRRGRSIDLMSLNCCYPV 204
++++ +++ K L +L++LN +P
Sbjct: 138 YVVVRMDGKSEVIICQYKKLSYTSPE-FELLTLNDNWPN 175
>gi|89069553|ref|ZP_01156897.1| LexA repressor [Oceanicola granulosus HTCC2516]
gi|89044888|gb|EAR50978.1| LexA repressor [Oceanicola granulosus HTCC2516]
Length = 229
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQT 135
+ K + G + P V VP+ YA++
Sbjct: 88 PDASPPPAAKPVEAAGAVELPVMGRI-AAGVPIAAISEESSRVAVPQGMIGRGPHYALE- 145
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM+ + GD++++ + GD ++ + K + G SI
Sbjct: 146 ------VRGDSMIDMGINDGDVVVIRETATADDGDVVVALVEEQEATLKRFRRQ-GSSIA 198
Query: 195 LMSLNCCYPVDTVEMSDI 212
L + N Y + + +
Sbjct: 199 LEAANPAYETRILPAAMV 216
>gi|85708240|ref|ZP_01039306.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. NAP1]
gi|85689774|gb|EAQ29777.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. NAP1]
Length = 211
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 10/151 (6%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
+ EIP+L +G G S T ++ + + S + +
Sbjct: 62 QVLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLRHLTSAKSASLS 121
Query: 133 IQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-G 190
I + SM P GD +L+ S D + + +V K + + G
Sbjct: 122 I------VGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRIAIKPGG 175
Query: 191 RSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
R I + S N YP ++ S++ + R++W
Sbjct: 176 RQITIASDNPAYPTWYDMDRSEVHVVGRVIW 206
>gi|34495811|ref|NP_900026.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
gi|34101666|gb|AAQ58034.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
12472]
Length = 248
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
A + SM + D +++N + + G+ L + DI K L G
Sbjct: 151 ASPRNLVVISVKGDSMSGVLEDRDTILVN-TAERHPGEGLFVIRIGDDIFVKQLQRLPGG 209
Query: 192 SIDLMSLNCCYPVDTVEMS----DIEWIARILW 220
++ + S N Y TV++S + E I R++W
Sbjct: 210 AVQVKSANPLYETFTVDLSRASGEFEVIGRVVW 242
>gi|84515591|ref|ZP_01002953.1| LexA repressor [Loktanella vestfoldensis SKA53]
gi|84510874|gb|EAQ07329.1| LexA repressor [Loktanella vestfoldensis SKA53]
Length = 227
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 12/154 (7%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSP 126
+ + +P+ S + P V VP+
Sbjct: 76 SGFQPRVIAGDKPASIPTAALPVEGGSMSLPVMGRIAAGVPIEAISEVSHHVHVPQSMLG 135
Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
YA++ + SM GD++++ N GD ++ + K
Sbjct: 136 KGEHYALE-------VKGDSMIEAGINDGDVVVIRETSVANNGDIVVALVEGQEATLKRF 188
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
R G +I L + N Y ++ R++
Sbjct: 189 -RRTGSAIALEAANPAYETRVFRDDQVKVQGRLV 221
>gi|331663913|ref|ZP_08364823.1| repressor protein phage e14 [Escherichia coli TA143]
gi|325496547|gb|EGC94406.1| e14 prophage; repressor protein phage e14 [Escherichia fergusonii
ECD227]
gi|331059712|gb|EGI31689.1| repressor protein phage e14 [Escherichia coli TA143]
Length = 97
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDL 195
+ SM+ YR GD++ ++ + GD ++ G+ K LI + L
Sbjct: 2 TYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-L 60
Query: 196 MSLNCCYPVDTV 207
+LN +P +
Sbjct: 61 KALNPNWPEPYI 72
>gi|307294055|ref|ZP_07573899.1| putative phage repressor [Sphingobium chlorophenolicum L-1]
gi|306880206|gb|EFN11423.1| putative phage repressor [Sphingobium chlorophenolicum L-1]
Length = 223
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 9/146 (6%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+ +P L S G D TG + H G+ +
Sbjct: 78 PVKGRSLPSVITVPRLSLGASAGPGSLDEDERATGA----MAFDANWLRHLGVR--PQKI 131
Query: 138 TRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI-DL 195
+ + SM P GD ++++ D + + G ++ K + R + +
Sbjct: 132 SIIRVDGESMAPTLSDGDEIMVDHDDDATRLRDGVYVLRLDGVLMVKRVALGPRRGLFSV 191
Query: 196 MSLNCCYPV-DTVEMSDIEWIARILW 220
+S N YP ++ + + + R++W
Sbjct: 192 LSDNPHYPDWIDIDPALVVIVGRVVW 217
>gi|85373679|ref|YP_457741.1| prophage MuMc02-like, S24 family peptidase [Erythrobacter litoralis
HTCC2594]
gi|84786762|gb|ABC62944.1| prophage MuMc02-like, peptidase, family S24 [Erythrobacter
litoralis HTCC2594]
Length = 211
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 77/216 (35%), Gaps = 25/216 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+DR+ + + ++R G +P ++F G R K+ +T+
Sbjct: 8 LDRLILKSGYGYASISRLLGRNPAYV---QQFIKRGSPR--------KLDDEDRKTLACF 56
Query: 73 LDLPF----SDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ EIP+L +G G S T ++ + + S
Sbjct: 57 FGVDEQVLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLRHLTSAK 116
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ +I + SM P GD +L+ S D + + +V K +
Sbjct: 117 SASLSI------VGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRIA 170
Query: 187 SRR-GRSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
+ GR I + S N YP ++ S++ + R++W
Sbjct: 171 IKPGGRQITIASDNPAYPTWYDMDRSEVHVVGRVIW 206
>gi|85375768|ref|YP_459830.1| prophage MuMc02, S24 family peptidase [Erythrobacter litoralis
HTCC2594]
gi|84788851|gb|ABC65033.1| prophage MuMc02, peptidase, family S24 [Erythrobacter litoralis
HTCC2594]
Length = 211
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 25/216 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+DR+ ++ L S ++R G + + ++F G R K+ +
Sbjct: 8 LDRLIQQRRLGYSAISRLIGRNSSYI---QQFIKRGSPR--------KLDDDDRRVLASF 56
Query: 73 LDLPF----SDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
+ EIP+L +G G +S T ++ + +
Sbjct: 57 FGVDEQVLGGPPAPIRDGLIEIPVLNVDASAGFGAIAESETAHTRFGFDERWLAALTRAK 116
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ +I SM P GD +L+ S D + + +V K +
Sbjct: 117 SASLSI------IHVLGDSMEPTLSDGDEVLVDASDEGSRLRDGIYVLRADDALVVKRVT 170
Query: 187 SRR-GRSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
+ GR I + S N YP D V+ S+I+ + R++W
Sbjct: 171 LKPGGRKITISSDNAAYPSWDDVDRSEIQVVGRVIW 206
>gi|120611227|ref|YP_970905.1| LexA repressor [Acidovorax citrulli AAC00-1]
gi|326317456|ref|YP_004235128.1| transcriptional repressor, LexA family [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|171769179|sp|A1TQ93|LEXA_ACIAC RecName: Full=LexA repressor
gi|120589691|gb|ABM33131.1| SOS-response transcriptional repressor, LexA [Acidovorax citrulli
AAC00-1]
gi|323374292|gb|ADX46561.1| transcriptional repressor, LexA family [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 224
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 121 PEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
P + H + Y+++ D K + SM GD+L + S + G ++
Sbjct: 110 PILAEEHVDQTYSVEGSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQSTREARNGQIIV 169
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ ++ K L R +I+L+ N YP+ TV+ +
Sbjct: 170 ARLGD-EVTVKRL-RRTAGAIELLPENPDYPIITVQPGE 206
>gi|117926824|ref|YP_867441.1| phage lambda repressor protein. serine peptidase. MEROPS family S24
[Magnetococcus sp. MC-1]
gi|117610580|gb|ABK46035.1| phage repressor protein, Serine peptidase, MEROPS family S24
[Magnetococcus sp. MC-1]
Length = 235
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 44/212 (20%)
Query: 15 RMAERH-NLTPSGLARKAGLDPTSFNK-----SKRFGIEG--------RNRWPSTESIFK 60
RMA H ++ S LAR+ G+ P + ++R G R W
Sbjct: 32 RMALDHVGMSQSELARRVGIRPQTVQHVCAGHTRRSGYTAEFAQVLGVRPEW-------- 83
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
LA + ++ + + +P+L + + + +
Sbjct: 84 -LAIGHGSLREFA------NEQNSGAVRRLPMLNWSNVIH---WSQSGYQAQQMGEVYDL 133
Query: 121 PEIRSP-HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
E+ P N +A+ K SM P +G ++++ V + L+I G+
Sbjct: 134 VEVTKPFGNHAFAL-------KVGGDSMEPKVPEGSTILVDP-AYVAQNNYLVIAHLEGE 185
Query: 180 IVA--KVLISRRGRSIDLMSLNCCYPVDTVEM 209
A K L+ G L LN YP+ +
Sbjct: 186 PEATFKQLVLEGGGRY-LKPLNPRYPIVDLSR 216
>gi|330503085|ref|YP_004379954.1| protein MucA [Pseudomonas mendocina NK-01]
gi|328917371|gb|AEB58202.1| protein MucA [Pseudomonas mendocina NK-01]
Length = 143
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + V S + + + SM L GDI++++ ++
Sbjct: 24 SAGFPS-PAEDHVD--ANLSLDDLCVQHPAATFFLRVRGDSMRDLGIFDGDIVVVDRSLT 80
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +++ G K L S+ GR + L + N YP + +
Sbjct: 81 PRVG-MVVVALVNGAFTCKQLGSQDGRPV-LHAANPAYPDIHLGEGE 125
>gi|260583034|ref|ZP_05850816.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae NT127]
gi|260093885|gb|EEW77791.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae NT127]
Length = 218
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEVLAFDSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTAIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPT 153
Query: 167 CGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G + + K L ++ I +L+ LN +P + +I RI+
Sbjct: 154 PGKFVAAINGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 208
>gi|148825949|ref|YP_001290702.1| putative prophage repressor CI [Haemophilus influenzae PittEE]
gi|229846735|ref|ZP_04466842.1| putative prophage repressor CI [Haemophilus influenzae 7P49H1]
gi|148716109|gb|ABQ98319.1| putative prophage repressor CI [Haemophilus influenzae PittEE]
gi|229810224|gb|EEP45943.1| putative prophage repressor CI [Haemophilus influenzae 7P49H1]
Length = 218
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEVLAFDSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTAIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPT 153
Query: 167 CGDRLLIKPRTGDIVAK---VLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G + + K L ++ I +L+ LN +P + +I RI+
Sbjct: 154 PGKFVAAINGDNEATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 208
>gi|145632034|ref|ZP_01787780.1| putative prophage repressor CI [Haemophilus influenzae R3021]
gi|144982305|gb|EDJ89901.1| putative prophage repressor CI [Haemophilus influenzae R3021]
Length = 218
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEVLAFDSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTAIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPT 153
Query: 167 CGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G + + K L ++ I +L+ LN +P + +I RI+
Sbjct: 154 PGKFVAAINGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 208
>gi|317152101|ref|YP_004120149.1| peptidase S24/S26A/S26B [Desulfovibrio aespoeensis Aspo-2]
gi|316942352|gb|ADU61403.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
aespoeensis Aspo-2]
Length = 156
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 14/122 (11%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
+ +PL FP+ + + + + + +
Sbjct: 26 RSAARPLPLAGEAV--------PAGFPS-PAEDYIE--KTLDLNEYLAPRPEATFFVRVA 74
Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM GDIL+++ ++ N G+ ++I G K L ++L N Y
Sbjct: 75 GDSMTGASIHHGDILVVDRSVTPNPGN-VVIACIDGGFTVKRLQR-TAGGLELAPENPDY 132
Query: 203 PV 204
Sbjct: 133 AP 134
>gi|145632822|ref|ZP_01788555.1| putative prophage repressor CI [Haemophilus influenzae 3655]
gi|145635978|ref|ZP_01791661.1| putative prophage repressor CI [Haemophilus influenzae PittAA]
gi|229844113|ref|ZP_04464254.1| putative prophage repressor CI [Haemophilus influenzae 6P18H1]
gi|144986478|gb|EDJ93044.1| putative prophage repressor CI [Haemophilus influenzae 3655]
gi|145266765|gb|EDK06786.1| putative prophage repressor CI [Haemophilus influenzae PittAA]
gi|229813107|gb|EEP48795.1| putative prophage repressor CI [Haemophilus influenzae 6P18H1]
Length = 218
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEILAFDSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTAIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPT 153
Query: 167 CGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G + + K L ++ I +L+ LN +P + +I RI+
Sbjct: 154 PGKFVAAINGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 208
>gi|169795366|ref|YP_001713159.1| putative repressor [Acinetobacter baumannii AYE]
gi|293609635|ref|ZP_06691937.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|169148293|emb|CAM86158.1| conserved hypothetical protein; putative repressor [Acinetobacter
baumannii AYE]
gi|292828087|gb|EFF86450.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 231
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVA---KVLISRR 189
K SMLP + GD + +N IQ + D +++ G+ A K++I
Sbjct: 138 NGYGLKITGNSMLPRFEPGDRIYVNPDIQTFDLQTNDLVIV-ACAGETEATFKKLIIEGN 196
Query: 190 GRSIDLMSLNCCYPVDTVEMSD 211
R ++ LN +P + +++
Sbjct: 197 NRYLE--PLNPDWPEKIIRLTE 216
>gi|224372655|ref|YP_002607027.1| hypothetical protein NAMH_0610 [Nautilia profundicola AmH]
gi|223589461|gb|ACM93197.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 205
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
I SM P + G I+ ++ V G ++ G + K + R
Sbjct: 117 IDKDLDAINVIGDSMEPTIKDGSIIFIDRNDKSVQNGGIFVVSTPAG-VFVKRINLRSDG 175
Query: 192 SIDLMSLNCCYPVDTVEMSDIEW-IARIL 219
I+L+S N YP +TVE ++I + RI+
Sbjct: 176 KIELISDNKLYPGETVEDAEIIGKVVRIM 204
>gi|327251986|gb|EGE63658.1| repressor protein CI [Escherichia coli STEC_7v]
Length = 197
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL N ++ + + + + E E P+ + G F +
Sbjct: 26 LAKIL---NVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 79
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 80 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 138
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 139 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 172
>gi|312965228|ref|ZP_07779464.1| repressor protein CI [Escherichia coli 2362-75]
gi|312290112|gb|EFR17996.1| repressor protein CI [Escherichia coli 2362-75]
Length = 237
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL N ++ + + + + E E P+ + G F +
Sbjct: 66 LAKIL---NVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|9634163|ref|NP_037735.1| prophage repressor CI [Enterobacteria phage HK97]
gi|193069559|ref|ZP_03050512.1| prophage repressor [Escherichia coli E110019]
gi|215487607|ref|YP_002330038.1| predicted repressor protein [Escherichia coli O127:H6 str.
E2348/69]
gi|218688908|ref|YP_002397120.1| Repressor protein CI from prophage [Escherichia coli ED1a]
gi|300825481|ref|ZP_07105548.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
gi|6901592|gb|AAF31095.1|AF069529_8 prophage repressor CI [Enterobacteria phage HK97]
gi|133874013|gb|ABO40704.1| prophage repressor [Enterobacteria phage mEp234]
gi|133874022|gb|ABO40712.1| prophage repressor [Enterobacteria phage HK106]
gi|192957106|gb|EDV87556.1| prophage repressor [Escherichia coli E110019]
gi|215265679|emb|CAS10082.1| predicted repressor protein [Escherichia coli O127:H6 str.
E2348/69]
gi|218426472|emb|CAR07300.1| Repressor protein CI from prophage [Escherichia coli ED1a]
gi|300522067|gb|EFK43136.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
Length = 237
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL N ++ + + + + E E P+ + G F +
Sbjct: 66 LAKIL---NVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor
owensensis OL]
gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor
owensensis OL]
Length = 230
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 32/176 (18%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGR-----------------TTEKKEKEIPL 92
R PS E + K N + L+ L S K IP+
Sbjct: 50 KRMPSLEMVKKFADFFNVSTDYLMGLTNSPNPNQDDDVVKKFLENNPDVRPVGKMIPIPI 109
Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152
+ +GS G + V V ++ + + SM P
Sbjct: 110 IGTVRAGSDGSLACEEY---LGSELVEVDTVKDGEYFF---------LRVKGDSMYPEIF 157
Query: 153 KGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
+GD++++ V G+ ++I +V KV+ I L S+N Y +
Sbjct: 158 EGDLVLVRKQPDVESGELAVVIVNGDEGVVKKVIKKENA--IILQSVNPKYEPIVI 211
>gi|315124225|ref|YP_004066229.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315017947|gb|ADT66040.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 208
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSID 194
K SM P GD++ ++ + V GD ++I G+I K L+ + I
Sbjct: 122 IKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVINL-DGEIYCKKLLKQPFVNEIV 180
Query: 195 LMSLNCCYPVDTVEMSDI 212
L S+N Y V + I
Sbjct: 181 LSSMNSFYKDIVVNIDQI 198
>gi|77457362|ref|YP_346867.1| phage repressor [Pseudomonas fluorescens Pf0-1]
gi|77381365|gb|ABA72878.1| putative regulatory protein of cro/cI family [Pseudomonas
fluorescens Pf0-1]
Length = 270
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 80/247 (32%), Gaps = 33/247 (13%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M + + + + ++H ++P+ L R+ G+ ++ ++ + G+ PS + I K
Sbjct: 24 MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSR----ILSGKIVDPSDKHISK 79
Query: 61 ILAATNETICQLLDLPFSDGRTTEKK---EKEIPLLYFPPSGSGG--------FFDSGVF 109
I + QL + E+ + + F
Sbjct: 80 IAEYFAVSTDQLRGRADVAPAANAGRDELHSELKDISLWDDDTPVDDDEVSVPFLREVEL 139
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSA- 162
G+ + E S G +++ + + SMLP+ R G + +N+
Sbjct: 140 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 199
Query: 163 ---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT------VEMSDIE 213
+ GD L G + K L I L S N D ++ I
Sbjct: 200 CGIGDIIDGD-LYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYSFQDMQEEQIV 257
Query: 214 WIARILW 220
+ + W
Sbjct: 258 ILGHVFW 264
>gi|86149763|ref|ZP_01067992.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86151693|ref|ZP_01069907.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85839581|gb|EAQ56841.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85841322|gb|EAQ58570.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 260.94]
gi|313116387|gb|ADR32195.1| phage repressor protein, putative [Campylobacter jejuni]
Length = 224
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSID 194
K SM P GD++ ++ + V GD ++I G+I K L+ + I
Sbjct: 122 IKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVINL-DGEIYCKKLLKQPFVNEIV 180
Query: 195 LMSLNCCYPVDTVEMSDI 212
L S+N Y V + I
Sbjct: 181 LSSMNSFYKDIVVNIDQI 198
>gi|311234974|gb|ADP87828.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio vulgaris
RCH1]
Length = 201
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SML GD+L+++ A+ G R++I G++ K L+ GR
Sbjct: 110 PAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVVIAAVDGELTVKRLVREGGRL 168
Query: 193 IDLMSLNCCYPVDTVE-MSDIE 213
+ L N YP + D+E
Sbjct: 169 L-LAPENAAYPPLDITGREDVE 189
>gi|217979165|ref|YP_002363312.1| putative phage repressor [Methylocella silvestris BL2]
gi|217504541|gb|ACK51950.1| putative phage repressor [Methylocella silvestris BL2]
Length = 211
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 29/184 (15%)
Query: 42 KRFGIEGRNRWPSTESI---FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
KR G R +TE++ +L T + + G + ++ +
Sbjct: 38 KRAVKSGDRRGVTTETLTALAPVLKTTAAWLLE--------GVGDPTPGNRVHVVGRIGA 89
Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
G+ +FP + PE + I T + + SM P Y GD++I
Sbjct: 90 GAE------IFPE---FEQTP-PEGLYEIEVPFPIATDAIAFQVEGDSMWPRYDPGDVII 139
Query: 159 L---NSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEW 214
+ + G ++ G K + + + DL S N P+ +V IEW
Sbjct: 140 CWREGADAEEVVGWEAAVRTADGKRYLKRIQRGAKAGTFDLESHNAA-PIRSV---KIEW 195
Query: 215 IARI 218
A I
Sbjct: 196 AAAI 199
>gi|294668761|ref|ZP_06733854.1| prophage MuMc02, peptidase, family S24 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309278|gb|EFE50521.1| prophage MuMc02, peptidase, family S24 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 231
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 56 ESIFKILAATNETICQLL---DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--- 109
E KI T ++ L+ E+K+ + ++ + F F
Sbjct: 42 EQCIKIAERTGVSLDWLILGKGEMKGGSAAPERKKSVMEEVWAALEENRSPFPDVAFVPL 101
Query: 110 -----PTGNKWNT--------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
GN + + G+Y SM+P GDI
Sbjct: 102 FDAEVGAGNGIEVYGENIIQLIPFSQSWLAAEGLYI--RDLACLPVNGDSMIPSLTSGDI 159
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+++ GD + + + K L + + S N Y + + +++
Sbjct: 160 VLV--NHAKRNGDGVFVVRMGNALRVKRLQWLANGDLRISSDNPIYQTEQITPAELA 214
>gi|15799951|ref|NP_285963.1| putative cI repressor protein for prophage CP-933H [Escherichia
coli O157:H7 EDL933]
gi|15829528|ref|NP_308301.1| hypothetical protein ECs0274 [Escherichia coli O157:H7 str. Sakai]
gi|168750234|ref|ZP_02775256.1| prophage repressor [Escherichia coli O157:H7 str. EC4113]
gi|168757277|ref|ZP_02782284.1| prophage repressor [Escherichia coli O157:H7 str. EC4401]
gi|168763488|ref|ZP_02788495.1| prophage repressor [Escherichia coli O157:H7 str. EC4501]
gi|168771975|ref|ZP_02796982.1| prophage repressor [Escherichia coli O157:H7 str. EC4486]
gi|168776110|ref|ZP_02801117.1| prophage repressor [Escherichia coli O157:H7 str. EC4196]
gi|168783011|ref|ZP_02808018.1| prophage repressor [Escherichia coli O157:H7 str. EC4076]
gi|195938652|ref|ZP_03084034.1| hypothetical protein EscherichcoliO157_19857 [Escherichia coli
O157:H7 str. EC4024]
gi|208808008|ref|ZP_03250345.1| prophage repressor [Escherichia coli O157:H7 str. EC4206]
gi|208812242|ref|ZP_03253571.1| prophage repressor [Escherichia coli O157:H7 str. EC4045]
gi|208819276|ref|ZP_03259596.1| prophage repressor [Escherichia coli O157:H7 str. EC4042]
gi|209396038|ref|YP_002268874.1| prophage repressor [Escherichia coli O157:H7 str. EC4115]
gi|217326454|ref|ZP_03442538.1| prophage repressor [Escherichia coli O157:H7 str. TW14588]
gi|254791408|ref|YP_003076245.1| putative cI repressor protein for prophage CP-933H [Escherichia
coli O157:H7 str. TW14359]
gi|331682213|ref|ZP_08382835.1| repressor protein CI [Escherichia coli H299]
gi|12513020|gb|AAG54571.1|AE005202_9 putative cI repressor protein for prophage CP-933H [Escherichia
coli O157:H7 str. EDL933]
gi|13359731|dbj|BAB33697.1| repressor protein CI [Escherichia coli O157:H7 str. Sakai]
gi|187768417|gb|EDU32261.1| prophage repressor [Escherichia coli O157:H7 str. EC4196]
gi|188015589|gb|EDU53711.1| prophage repressor [Escherichia coli O157:H7 str. EC4113]
gi|188999620|gb|EDU68606.1| prophage repressor [Escherichia coli O157:H7 str. EC4076]
gi|189355754|gb|EDU74173.1| prophage repressor [Escherichia coli O157:H7 str. EC4401]
gi|189359431|gb|EDU77850.1| prophage repressor [Escherichia coli O157:H7 str. EC4486]
gi|189366359|gb|EDU84775.1| prophage repressor [Escherichia coli O157:H7 str. EC4501]
gi|208727809|gb|EDZ77410.1| prophage repressor [Escherichia coli O157:H7 str. EC4206]
gi|208733519|gb|EDZ82206.1| prophage repressor [Escherichia coli O157:H7 str. EC4045]
gi|208739399|gb|EDZ87081.1| prophage repressor [Escherichia coli O157:H7 str. EC4042]
gi|209157438|gb|ACI34871.1| prophage repressor [Escherichia coli O157:H7 str. EC4115]
gi|217322675|gb|EEC31099.1| prophage repressor [Escherichia coli O157:H7 str. TW14588]
gi|254590808|gb|ACT70169.1| putative cI repressor protein for prophage CP-933H [Escherichia
coli O157:H7 str. TW14359]
gi|326338747|gb|EGD62566.1| Phage repressor [Escherichia coli O157:H7 str. 1044]
gi|326342468|gb|EGD66248.1| Phage repressor [Escherichia coli O157:H7 str. 1125]
gi|331080637|gb|EGI51813.1| repressor protein CI [Escherichia coli H299]
Length = 237
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL N ++ + + + + E E P+ + G F +
Sbjct: 66 LAKIL---NVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAEKWVSTTKKASGSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|21230556|ref|NP_636473.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769453|ref|YP_244215.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004]
gi|44888105|sp|Q8PBM1|LEXA1_XANCP RecName: Full=LexA repressor 1
gi|21112131|gb|AAM40397.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574785|gb|AAY50195.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004]
Length = 201
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G +P+L + P G +G+ ++A+ D
Sbjct: 68 PGGAGPDALLALPVLGRVAA---------GVPIGA---DIGLDRQLWLDRSLFAL-RPDY 114
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ Q SM +GD++ + + G ++++ G+I K L R +I L+
Sbjct: 115 LLQVQGDSMIDDGILEGDLVGVQRSSDARNG-QIVVARVDGEITIKRL-ERSADAIRLLP 172
Query: 198 LNCCYPVDTVEMSD 211
N + V
Sbjct: 173 RNPAHAPIVVAADA 186
>gi|120601508|ref|YP_965908.1| prophage repressor [Desulfovibrio vulgaris DP4]
gi|120561737|gb|ABM27481.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Desulfovibrio vulgaris DP4]
Length = 202
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SML GD+L+++ A+ G R++I G++ K L+ GR
Sbjct: 111 PAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVVIAAVDGELTVKRLVREGGRL 169
Query: 193 IDLMSLNCCYPVDTVE-MSDIE 213
+ L N YP + D+E
Sbjct: 170 L-LAPENAAYPPLDITGREDVE 190
>gi|296116167|ref|ZP_06834785.1| LexA repressor [Gluconacetobacter hansenii ATCC 23769]
gi|295977273|gb|EFG84033.1| LexA repressor [Gluconacetobacter hansenii ATCC 23769]
Length = 235
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ ++P L +G + + + VP
Sbjct: 93 GDFTPALPAVQVADTANAVQVPFLGRIAAGH------AIEAISDASRLIDVPAGLIGVGT 146
Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
YA++ SM GD +I+ Q G+ ++ ++ K L +
Sbjct: 147 YYALE-------VCGDSMIEAGILDGDTVIVRQDRQAENGEIVVALIEGQEVTLKRLRRK 199
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIE 213
G +I L N Y + +
Sbjct: 200 -GSTIALEPANARYETRIMPADKVA 223
>gi|87124247|ref|ZP_01080096.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9917]
gi|86167819|gb|EAQ69077.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9917]
Length = 147
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 14/135 (10%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
L + +++ +PL + FP+ + V V + +
Sbjct: 7 SLQAALPLRAQRQPLLLPLAGERVA--------AGFPSPAD-DYVEV--GIDLNEQLIRH 55
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SML GD+L+++ +++ G R+++ G K L RG+
Sbjct: 56 PLSTFFLRVSGESMLGAGIHDGDLLVVDRSLEPRPG-RVVVAVLDGAFTLKRLARHRGQ- 113
Query: 193 IDLMSLNCCYPVDTV 207
+ L + + YP +
Sbjct: 114 LRLEAAHPDYPPLEL 128
>gi|237746397|ref|ZP_04576877.1| repressor protein CI [Oxalobacter formigenes HOxBLS]
gi|229377748|gb|EEO27839.1| repressor protein CI [Oxalobacter formigenes HOxBLS]
Length = 245
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGV--FPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
K ++PL+ + +G+ + + F G+ + P S H I + +
Sbjct: 102 SGPPPDKVGQLPLISWVRAGN---WSETIDNFAPGDAEEWIPCPFKHSRHAFILQVVGKS 158
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGRSIDLM 196
+ + S Y GD + ++ + G ++++ K L+ LM
Sbjct: 159 MYNPGGERS----YNDGDYIAVDPCREAQNGSLVVVRLDDDNTATFKQLLIEPNGERMLM 214
Query: 197 SLNCCYPVDTV 207
+LN +P +
Sbjct: 215 ALNPSWPNRIM 225
>gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides sp.
BAV1]
gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family
[Dehalococcoides sp. BAV1]
Length = 207
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 24/147 (16%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKK---------EKEIPLLYFPPSGSGGF 103
PS E++ KI A I + P + ++ IP+ +G
Sbjct: 45 PSYEALSKIARALGVDIKEFKTDPEIVRLESPEEVLRKYQLMAPVSIPVYDHFYVHAG-- 102
Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
D+ + P + I+ +K + M P+ +GDIL+++
Sbjct: 103 -DAALAP-------IEYIYRARESFAPQNIE----AYKVRGNCMEPVISEGDILLIDRDR 150
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRG 190
G+ +L+ G+++ LI + G
Sbjct: 151 TPQKGN-ILLCVVDGEVIVGKLIEQNG 176
>gi|94263325|ref|ZP_01287140.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
gi|93456280|gb|EAT06410.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
Length = 145
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + V + + A + SM+ DIL+++ +++
Sbjct: 29 SAGFPS-PAEDYVE--GQLDLNQLMVAHPAATFFVRVAGDSMIGAGIHHDDILVVDRSLE 85
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
G R++I G++ K L G + L++ N YP
Sbjct: 86 PTSG-RVVIAVINGELTVKRLFRHNG-TARLLAENPNYPP 123
>gi|86606635|ref|YP_475398.1| S24 family peptidase [Synechococcus sp. JA-3-3Ab]
gi|86555177|gb|ABD00135.1| peptidase, S24 (LexA) family [Synechococcus sp. JA-3-3Ab]
Length = 218
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ Q SM P GD + + ++ G+ + + R G++ K L G + ++S N
Sbjct: 130 IRVQGDSMSPTLEDGDWIFVERQKEL-GGEGIYVFQRDGELWVKRLQRLSGSRVKVISDN 188
Query: 200 CCYPVDTVEMSD 211
+P V+ +D
Sbjct: 189 PRFPSFVVDCAD 200
>gi|218780516|ref|YP_002431834.1| SOS-response transcriptional repressor, LexA [Desulfatibacillum
alkenivorans AK-01]
gi|259494471|sp|B8FIX5|LEXA_DESAA RecName: Full=LexA repressor
gi|218761900|gb|ACL04366.1| SOS-response transcriptional repressor, LexA [Desulfatibacillum
alkenivorans AK-01]
Length = 203
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 16/124 (12%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
T +IPL+ +G+ + N +T+ V + +++ +
Sbjct: 71 TPPGAGGKIPLVGRIAAGA------PILAVENVMDTLDVDRAFFGSSDAFSV-------R 117
Query: 142 TQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM GD +++ GD ++ ++ K R I+L N
Sbjct: 118 VEGDSMIEAHIEDGDYVVIKPTATPRNGD-IVAALVNDEVTLKYFHRDGSR-IELRPANV 175
Query: 201 CYPV 204
Y
Sbjct: 176 RYKP 179
>gi|269121509|ref|YP_003309686.1| phage repressor [Sebaldella termitidis ATCC 33386]
gi|268615387|gb|ACZ09755.1| putative phage repressor [Sebaldella termitidis ATCC 33386]
Length = 217
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
+ F +G G+ D+ + V +P+ G++ I K SM P +
Sbjct: 92 IYGFASAG-NGYLDTTDYEI----MEVSLPKNIRHKKGLFGI-------KVHGESMEPEF 139
Query: 152 RKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
DILIL+ + +++++ + K+L L S N YP +
Sbjct: 140 YNNDILILDPSCPEWEELNNKVIVVDLNNERYVKLLKYYNDGRAYLFSYNEIYPPIQITE 199
Query: 210 SD 211
+D
Sbjct: 200 ND 201
>gi|78777294|ref|YP_393609.1| putative phage repressor [Sulfurimonas denitrificans DSM 1251]
gi|78497834|gb|ABB44374.1| putative phage repressor [Sulfurimonas denitrificans DSM 1251]
Length = 219
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
SM P + DI+ +N + G I+ +G + K + R ID++
Sbjct: 131 EAINVSGDSMEPTFSYNDIVFINRDKKDLQRGGIFTIRTESG-LFIKRVQKRIDGKIDVI 189
Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
S N Y T+ + +IE I R++
Sbjct: 190 SDNPIYSTQTLNLGEIEVIGRVV 212
>gi|56697019|ref|YP_167381.1| LexA repressor [Ruegeria pomeroyi DSS-3]
gi|71648704|sp|Q5LRH4|LEXA_SILPO RecName: Full=LexA repressor
gi|56678756|gb|AAV95422.1| LexA repressor [Ruegeria pomeroyi DSS-3]
Length = 231
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
V VP YA++ + SM GD++++ + GD ++
Sbjct: 130 QVAVPGSMVGKGEHYALE-------VKGDSMIEAGINDGDVVVIRETSTADNGDIVVALV 182
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K R SI L + N Y + + R++
Sbjct: 183 DDSEATLKRFFRRGA-SIALEAANPAYETRVLPSDRVRVQGRLV 225
>gi|116620617|ref|YP_822773.1| LexA repressor [Candidatus Solibacter usitatus Ellin6076]
gi|116223779|gb|ABJ82488.1| SOS-response transcriptional repressor, LexA [Candidatus Solibacter
usitatus Ellin6076]
Length = 207
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 16/142 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ R T EIP+L + P V +A
Sbjct: 74 EQRRTRPAIAEIPMLGRIAA---------GLPV-EAVEQREVLNFAD-----FAGDGNTF 118
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ + SM GD+++L Q GD ++ D K +I L
Sbjct: 119 ALEVRGNSMIDDHICDGDVILLERVTQARDGDIVVALVAGSDTTLKRFYRESADTIRLQP 178
Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
N V D++ R+L
Sbjct: 179 ANAALKPILVPARDVQIQGRLL 200
>gi|296270862|ref|YP_003653494.1| putative phage repressor [Thermobispora bispora DSM 43833]
gi|296093649|gb|ADG89601.1| putative phage repressor [Thermobispora bispora DSM 43833]
Length = 107
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ SMLP R GD L++ + GD ++ + G ++ K L S
Sbjct: 4 AVRVAGESMLPALRPGDCLLVRRGAPIRPGDLVVARRPHG-LIVKRAFRLMPEGWWLESD 62
Query: 199 NCCYPVDT 206
N P
Sbjct: 63 NQSAPGRQ 70
>gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 234
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 26/217 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFKILAATNETIC 70
+ R+ + LT + LAR +G+ + ++ + R G+ W ES+ +L ++
Sbjct: 7 LRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLS-IETW---ESLASVL---GCSVG 59
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGN-------KWNTV 118
L+ R + L F D G +++
Sbjct: 60 YLVS--GEGDRKSSGHRGSAGKLSFFQWIDVPILDDTAVACAGNGIGGMAEVYADAEDSI 117
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP-R 176
+P + A + + SM G +++N +V GD L+ R
Sbjct: 118 MLPGELLGTVSVNA-DRRPFIITVEGDSMEEAGILDGSQVVVNPEEEVYDGDPALVSFGR 176
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
GD K + +R ++++ S + YP + + DI+
Sbjct: 177 NGDWAVKWVYWQRNGAVEIRSSSLRYPPRSFSVEDID 213
>gi|257066290|ref|YP_003152546.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
20548]
gi|256798170|gb|ACV28825.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
20548]
Length = 206
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 19/191 (9%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
+ ++ E + LA+ G++ + + +R R PSTE + K N +
Sbjct: 5 AKLKQLREEQEMKQETLAQILGINRATISMYERN-----QRVPSTEILQKYTKTFNVSSD 59
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
LL ++ IP+ G+ D ++ +I
Sbjct: 60 YLLGNTHYKSNNINNEKYTIPVYASISCGNPFVADENIY---------DFEDID----IA 106
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
Q + + SM P ++ GD+ I+ ++ G ++ + K++ +
Sbjct: 107 LKSQGEHFGLLCRGDSMSPEFKDGDVAIIRKQSDIDSGQVAAVRINGDEATLKIV-KKSE 165
Query: 191 RSIDLMSLNCC 201
+ I L+++N
Sbjct: 166 QGITLVAINPD 176
>gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter
bemidjiensis Bem]
gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein
[Geobacter bemidjiensis Bem]
Length = 209
Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+ PLL P F D G + VP++ G YAI
Sbjct: 80 PGAEQPNVSRAPLLEMIP---DSFPDDP----GAISRYISVPDLP---EGCYAI------ 123
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGR--SIDLM 196
M P R GD++I + GD +++ R G+ +L R + I L
Sbjct: 124 -VCYGDFMSPTIRDGDVVIFRPESEQKKSGDIIIVHNRWGEP---ILRRYRVKDDEIYLA 179
Query: 197 SLNCCYPV 204
N Y
Sbjct: 180 PDNPAYAP 187
>gi|260433608|ref|ZP_05787579.1| LexA repressor [Silicibacter lacuscaerulensis ITI-1157]
gi|260417436|gb|EEX10695.1| LexA repressor [Silicibacter lacuscaerulensis ITI-1157]
Length = 232
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q + + SM+ GDI+++ + GD ++ + K R G +
Sbjct: 141 QGDHYALEVRGDSMIDAGINDGDIVVIRETATADNGDIVVALVEDQEATLKRFFRR-GNA 199
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L + N Y + ++ R++
Sbjct: 200 IALEAANPAYETRVLPNDKVKVQGRLV 226
>gi|188992642|ref|YP_001904652.1| LexA repressor [Xanthomonas campestris pv. campestris str. B100]
gi|167734402|emb|CAP52612.1| LexA repressor [Xanthomonas campestris pv. campestris]
Length = 201
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G +P+L + P G +G+ ++A+ D
Sbjct: 68 PGGAGPDALLALPVLGRVAA---------GVPIGA---DIGLDRQLWLDRSLFAL-RPDY 114
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ Q SM +GD++ + + G ++++ G+I K L R +I L+
Sbjct: 115 LLQVQGDSMIDDGILEGDLVGVQRSSDARNG-QIVVARVDGEITIKRL-ERSADAIRLLP 172
Query: 198 LNCCYPVDTVE 208
N + V
Sbjct: 173 RNPAHAPIVVA 183
>gi|46581311|ref|YP_012119.1| umuD protein [Desulfovibrio vulgaris str. Hildenborough]
gi|46450732|gb|AAS97379.1| umuD protein [Desulfovibrio vulgaris str. Hildenborough]
Length = 164
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SML GD+L+++ A+ G R++I G++ K L+ GR
Sbjct: 73 PAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVVIAAVDGELTVKRLVREGGRL 131
Query: 193 IDLMSLNCCYPVDTVE-MSDIE 213
+ L N YP + D+E
Sbjct: 132 L-LAPENAAYPPLDITGREDVE 152
>gi|70731061|ref|YP_260802.1| LexA repressor [Pseudomonas fluorescens Pf-5]
gi|68345360|gb|AAY92966.1| LexA repressor [Pseudomonas fluorescens Pf-5]
Length = 202
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 24/156 (15%)
Query: 57 SIFK--ILAATNETICQL----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
S+ + +LA T ++ + + EIP+L +G+ P
Sbjct: 41 SVARKHVLALTEAGFIEVNPHQARGIRLLNQPRRPELLEIPVLGRVAAGA---------P 91
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP--LYRKGDILILNSAIQVNCG 168
G + G+++ +T D + Q SM+ ++ GD++ + + +V G
Sbjct: 92 IGV---DADIHGQLLLDPGMFS-RTPDYLLRVQGDSMIDDGIF-DGDLVAVRRSSEVRNG 146
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
++ + G++ K + G+ I L+ N Y
Sbjct: 147 QTVIARL-DGEVTIKRFERK-GQGIRLLPRNPAYQP 180
>gi|224453|prf||1105256A repressor lambda mutant
Length = 136
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ +D SM P + G +++++ V GD + + ++ K LI
Sbjct: 39 SAFWFEVEDNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLEGDELTFKKLIRDS 98
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 99 GQVF-LQPLNPQYP 111
>gi|289166242|ref|YP_003456380.1| peptidase, S24 family [Legionella longbeachae NSW150]
gi|288859415|emb|CBJ13352.1| putative peptidase, S24 family [Legionella longbeachae NSW150]
Length = 202
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 40/210 (19%), Positives = 79/210 (37%), Gaps = 26/210 (12%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKR----FGIEGRNRWPST-ESIFKILAATNETICQL 72
+ +N++ S LAR L +N R + R ST +SI N ++ L
Sbjct: 2 KENNVSESDLARALNL---PYNTIHRLVSGHTTDPRI---STLKSIASYF---NVSLDTL 52
Query: 73 LDLPF--SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
L+ + T + +P++ + + + W + + I +
Sbjct: 53 LNQNQGVPNTLKTHIGPRTVPIVTWEQLSDDELLRTINSLNWDHWLPISLVSIDNLSLNA 112
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR 189
YA++++ SM P + G I++ + GD +L+K + + + LI
Sbjct: 113 YALESRP--------SMQPRFPIGTFFIIDPDCKPIDGDLILVKIKINNAVSLRELIIDP 164
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
SI L+ + V S+ E I ++
Sbjct: 165 P-SIQLLPIIENSDVLNFNESEHEIIGVVV 193
>gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R]
gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R]
gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R]
Length = 208
Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI--SRRGR 191
D SM P DIL++ ++ GD + K D+ K L
Sbjct: 113 PACDFATTVSGDSMEPKIFDSDILLIRKTETLDSGDIGIFKI-DEDVFCKKLQLNHLTNE 171
Query: 192 SIDLMSLNCCYPVDTVEMSDIE 213
I L SLN CY + ++E
Sbjct: 172 VI-LKSLNPCYAPRYLSKEELE 192
>gi|94264776|ref|ZP_01288554.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
gi|94264785|ref|ZP_01288563.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
gi|93454765|gb|EAT05020.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
gi|93454774|gb|EAT05029.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
Length = 145
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + V + + A + SM+ DIL+++ +++
Sbjct: 29 SAGFPS-PAEDYVE--GQLDLNQLMVAHPAATFFVRVVGDSMIGAGIHHDDILVVDRSLE 85
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
G R++I G++ K L G + L++ N YP
Sbjct: 86 PVSG-RVVIAVINGELTVKRLFRHNG-TARLLAENPNYPP 123
>gi|317164568|gb|ADV08109.1| putative CI protein [Neisseria gonorrhoeae TCDC-NG08107]
Length = 171
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P++ G L +N+A ++ ++ +G + K+L + + S N Y
Sbjct: 89 DGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEY 148
Query: 203 PVDTVEMSDIEWIARILWAS 222
+T + + I R+ W S
Sbjct: 149 KDETASLDSLTVIGRVFWWS 168
>gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
DSM 20745]
gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
DSM 20745]
Length = 367
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M ++I AI R+ + +T LA +AG+ + ++ +R PS + K
Sbjct: 1 MQPVQRQRIGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQT-----LPSFTVLAK 55
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
I I + + L + + +L P FD
Sbjct: 56 IAEVLGVGIDEFVRLERDVTLLDADLGRYLDMLGIGPPVRDELFD 100
>gi|240080373|ref|ZP_04724916.1| putative CI protein [Neisseria gonorrhoeae FA19]
gi|254494046|ref|ZP_05107217.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|226513086|gb|EEH62431.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|319411131|emb|CBY91536.1| Repressor protein CI [Neisseria meningitidis WUE 2594]
Length = 232
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P++ G L +N+A ++ ++ +G + K+L + + S N Y
Sbjct: 150 DGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEY 209
Query: 203 PVDTVEMSDIEWIARILWAS 222
+T + + I R+ W S
Sbjct: 210 KDETASLDSLTVIGRVFWWS 229
>gi|84503087|ref|ZP_01001183.1| LexA repressor [Oceanicola batsensis HTCC2597]
gi|84388631|gb|EAQ01503.1| LexA repressor [Oceanicola batsensis HTCC2597]
Length = 233
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 72/217 (33%), Gaps = 43/217 (19%)
Query: 42 KRFGIEGRNRWPSTESIFKILAA-TNETICQLLDLPFSDG--RTTEKKEKEIPLLYFPPS 98
KR +G PS + + + L + I +L+ G R + + I ++ P S
Sbjct: 15 KRVQRDGVP--PSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHRARAIEIVKLPDS 72
Query: 99 --GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ---------------------- 134
G GG F V G + P +A++
Sbjct: 73 LGGDGGGFVPRVIDGGAGPADPPL-GDTRPVEAAHALELPVMGRIAAGVPIEAINQVSHH 131
Query: 135 -----------TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + + SM+ GD++++ + GD ++ +
Sbjct: 132 VAVPGSMLSGRGEHFALEVRGDSMIDAGINDGDVVVVRETGSADNGDIVVALVDEQEATL 191
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
K R G+ I+L++ N Y + + ++ R++
Sbjct: 192 KRFFRRSGQ-IELVAANPAYETRVLPDNRVKVQGRLV 227
>gi|224825138|ref|ZP_03698244.1| putative phage repressor [Lutiella nitroferrum 2002]
gi|224602809|gb|EEG08986.1| putative phage repressor [Lutiella nitroferrum 2002]
Length = 227
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL----LIKPRTGDIVA 182
N ++A + SM P + D+++L+++ + +++ ++
Sbjct: 126 SNYLHAEPANLAIISVEGDSMEPTLKDHDVIMLDTS---RRDPNVEGIYVLRLDD-ALLV 181
Query: 183 KVLISRRGRSIDLMSLNCCYP----VDTVEMSDIEWIARILW 220
K + G+ I + S N YP + D+ I +++W
Sbjct: 182 KQVQRIPGK-IRVSSANPAYPPFDVDLSNPAEDVAIIGKVVW 222
>gi|116074633|ref|ZP_01471894.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9916]
gi|116067855|gb|EAU73608.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9916]
Length = 127
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + V V + + + + SM+ GD+L+++ ++
Sbjct: 11 AAGFPSPAD-DYVDV--GIDLNEQLIRHPSSTFFLRVSGDSMIGAGIHDGDLLVVDRSLN 67
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
G R+++ G K L+ R + L + N YP
Sbjct: 68 PRPG-RIVVAILDGAFTLKRLMR-DQRGLHLEAANPAYP 104
>gi|74317534|ref|YP_315274.1| hypothetical protein Tbd_1516 [Thiobacillus denitrificans ATCC
25259]
gi|74057029|gb|AAZ97469.1| hypothetical protein Tbd_1516 [Thiobacillus denitrificans ATCC
25259]
Length = 120
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
I+ + ++ SM+P + +G+I+++ + V G ++ + +
Sbjct: 12 IQDINEASKCAGSEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYVVAYVND-EYIF 70
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+ ++ R + L +N Y V+ D+
Sbjct: 71 RQIVKRDDGWM-LKPVNPLYENIPVDDLDVA 100
>gi|57237226|ref|YP_178238.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
gi|57166030|gb|AAW34809.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
Length = 209
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G++P +FN K + I L N +I
Sbjct: 12 DILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYPQ------ILNFLNERNISINY 65
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + +I LY + GG G + + E+
Sbjct: 66 FFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDCSELIVDEKLLN 116
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 117 FFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSICVINTRDG-LFIKQVLKQDD 175
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 176 GVI-LHSLNPLYED 188
>gi|133873987|gb|ABO40681.1| prophage repressor [Enterobacteria phage HK244]
Length = 237
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL ++ + + + + E E P+ + G F +
Sbjct: 66 LAKILK---VSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|133873996|gb|ABO40689.1| prophage repressor [Enterobacteria phage HK542]
Length = 237
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL ++ + + + + E E P+ + G F +
Sbjct: 66 LAKILK---VSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|133873970|gb|ABO40666.1| prophage repressor [Enterobacteria phage HK544]
Length = 237
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL ++ + + + + E E P+ + G F +
Sbjct: 66 LAKILK---VSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|9626292|ref|NP_040628.1| repressor [Enterobacteria phage lambda]
gi|238903101|ref|YP_002928897.1| Repressor protein CI [Escherichia coli BW2952]
gi|133353|sp|P03034|RPC1_LAMBD RecName: Full=Repressor protein CI
gi|15057|emb|CAA24991.1| unnamed protein product [Enterobacteria phage lambda]
gi|215147|gb|AAA96581.1| rexb (exclusion;144) [Enterobacteria phage lambda]
gi|8919960|emb|CAB96428.1| phage lambda repressor protein CI [Escherichia coli]
gi|60594765|gb|AAX29986.1| lambda repressor CI [Expression vector pINV-110]
gi|62114612|gb|AAX63486.1| lambda repressor protein [Low threshold vector pLTSUB-302]
gi|238863451|gb|ACR65449.1| Repressor protein CI [Escherichia coli BW2952]
Length = 237
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL ++ + + + + E E P+ + G F +
Sbjct: 66 LAKILK---VSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|194099008|ref|YP_002002081.1| putative CI protein [Neisseria gonorrhoeae NCCP11945]
gi|304386577|ref|ZP_07368865.1| S24 family peptidase [Neisseria meningitidis ATCC 13091]
gi|193934298|gb|ACF30122.1| putative CI protein [Neisseria gonorrhoeae NCCP11945]
gi|304339406|gb|EFM05478.1| S24 family peptidase [Neisseria meningitidis ATCC 13091]
Length = 232
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P++ G L +N+A ++ ++ +G + K+L + + S N Y
Sbjct: 150 DGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEY 209
Query: 203 PVDTVEMSDIEWIARILWAS 222
+T + + I R+ W S
Sbjct: 210 KDETASLDSLTVIGRVFWWS 229
>gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2]
gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans
PW2]
Length = 210
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 14/155 (9%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
+ K+ +A TI LL L + IP+ +G+ +
Sbjct: 46 LIKLSSALGVTISYLLGLENTVAAQ-PAPSFPIPVFGNIAAGT------------PREAL 92
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ + +Y T SM L+ G +++++ A+ V GD ++
Sbjct: 93 LQSDIVHDTEESLYRAHKSSFWLITSGNSMNKLFPDGSLVLIDPALPVQNGDVGVVFVNG 152
Query: 178 GDIVAK-VLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D K + + S + Y + D
Sbjct: 153 EDATLKRIFFDDDAIRLHPESYDPDYRDYVIRQDD 187
>gi|219870788|ref|YP_002475163.1| putative prophage repressor CI, XRE family transcriptional
regulator/SOS-response transcriptional repressors
(RecA-mediated autopeptidases)/ LexA family
repressor/S24 family protease [Haemophilus parasuis
SH0165]
gi|219690992|gb|ACL32215.1| putative prophage repressor CI, XRE family transcriptional
regulator/SOS-response transcriptional repressors
(RecA-mediated autopeptidases)/ LexA family
repressor/S24 family protease [Haemophilus parasuis
SH0165]
Length = 175
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 41/186 (22%)
Query: 53 PSTESIFKILAATNE---------TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---- 99
P+ + +++ T TI T+ KK + PL+ +G
Sbjct: 2 PNVNEVAQMINLTGVNKVILNGDGTIEDFDPNITP---TSVKKSRAYPLVSSIQAGMWTE 58
Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
+ F DS + + + P + SM P + +GD++++
Sbjct: 59 TYDFRDSEGY------DYIDTEIDAGPDAFF---------LRVSGMSMEPKFSEGDLVLI 103
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAK---VLISRRGR---SIDLMSLNCCYPVDTVEMSDIE 213
+ + + GD + G+ K L +L+ LN +P + DI
Sbjct: 104 DIRKRPHPGDFVAAVNGNGEATLKRYRELGELSPSGNPHFELVPLNQDFPTLSSMKQDI- 162
Query: 214 WIARIL 219
RI+
Sbjct: 163 ---RII 165
>gi|268596517|ref|ZP_06130684.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
gi|268550305|gb|EEZ45324.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
Length = 223
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P++ G L +N+A ++ ++ +G + K+L + + S N Y
Sbjct: 141 DGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEY 200
Query: 203 PVDTVEMSDIEWIARILWAS 222
+T + + I R+ W S
Sbjct: 201 KDETASLDSLTVIGRVFWWS 220
>gi|192291732|ref|YP_001992337.1| phage repressor [Rhodopseudomonas palustris TIE-1]
gi|192285481|gb|ACF01862.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
Length = 214
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 27/173 (15%)
Query: 58 IFKILAAT---NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ + L T +L DL G + + + + G+G D
Sbjct: 30 VSRWLDGTEPRGPMRDRLRDLAEESGLVPQARANHV-IKIMGRVGAGAIIDP-------- 80
Query: 115 WNTVGVPEIR-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGD 169
+ PE Y I + + TSM+P Y G+IL++ V+ G
Sbjct: 81 -DYEQTPEDGLEQIELPYPIGSDLIGFEVSGTSMMPKYDPGEILVVQREQPVSFDSMIGQ 139
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
+++ G R + + + Y +++ I AR++W S
Sbjct: 140 YAVVRTDDG--------RRLVKRVMPGPKSNLYNLESANAETIV-GARLVWGS 183
>gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N]
gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N]
Length = 360
Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVL--ISRRGRSIDLMS 197
SM P+ R G L++ + + D + G ++ K + GR + S
Sbjct: 271 GDSMEPIIRDGAALLVVPDLGLTLRDVAAGGVYAINYDGKMIVKTVARDRLTGRWVA-RS 329
Query: 198 LNCCYPVDTVEMS-DIEWIARILWA 221
N +P T+E + + R++WA
Sbjct: 330 FNTQHPDITLEGDVSVRVLGRVVWA 354
>gi|146311560|ref|YP_001176634.1| putative prophage repressor [Enterobacter sp. 638]
gi|145318436|gb|ABP60583.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Enterobacter sp. 638]
Length = 144
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + + SM+ GD+L+++ A+
Sbjct: 25 GFPS-PAQDYVE--DRIDLNKLVIKHPSATYFIRVSGESMIGAGITDGDLLVVDRALTPE 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD +++ G+ K L R + L+ N + + +
Sbjct: 82 HGD-IVVAAVAGEFTVKELRVRPI--LQLVPRNPRFSPIIFDAEE 123
>gi|85860762|ref|YP_462964.1| DNA polymerase V subunit [Syntrophus aciditrophicus SB]
gi|85723853|gb|ABC78796.1| DNA polymerase V subunit [Syntrophus aciditrophicus SB]
Length = 195
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 33/170 (19%)
Query: 49 RNRWPSTESIFKILAATNETICQLL----------DLPFSDGRTTEKKEKEIPLLYFPPS 98
R R P+ E + +L ++++ + +++ IP++ +
Sbjct: 21 RKRMPTYEEMVALLGVRSKSVVHFWINKLVEAKILEKDRGGHLAWKERPFSIPMVGEVAA 80
Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRK 153
FP+ + +I S + A + SM LP
Sbjct: 81 ---------GFPSP---EEEELRDILSLDEYLVARPDASFLLQVSGDSMTGAGILP---- 124
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
GD++I+ + GD ++I G+ K + + L + N YP
Sbjct: 125 GDLVIVEKGREPKNGD-VVIAEVDGEWTMKTF-RKEKGEVYLEAANPKYP 172
>gi|58616539|ref|YP_195669.1| DNA repair protein [Azoarcus sp. EbN1]
gi|56316002|emb|CAI10645.1| DNA repair protein [Aromatoleum aromaticum EbN1]
Length = 158
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 21/142 (14%)
Query: 91 PLLYFPPSGSGGFFDSG------VFPTGNKWNTVGVPEIRSPHN------GIYAI--QTQ 136
PL P+ G P G + G P + Y +
Sbjct: 8 PLSDLSPAAVAGLRYPSPTRGCLAIPLGLAPVSAGFPSPAEDYEDKKLDINDYLVRNPVS 67
Query: 137 DTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM ++ GDIL+++ ++ G ++I G+ + K R R I
Sbjct: 68 TFYFPVKGDSMQGAQVF-DGDILVVDRSVMPAHG-HVVIAFVNGERLVKRFHRRGDR-IA 124
Query: 195 LMSLNCCYPVDTVEMSD--IEW 214
L++ N YP + + W
Sbjct: 125 LLAENPGYPPLELTEGSELVIW 146
>gi|160899002|ref|YP_001564584.1| LexA repressor [Delftia acidovorans SPH-1]
gi|229621210|sp|A9BWH9|LEXA_DELAS RecName: Full=LexA repressor
gi|160364586|gb|ABX36199.1| transcriptional repressor, LexA family [Delftia acidovorans SPH-1]
Length = 224
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + SA + G ++ + ++ K L R + ++L+ N YPV V +
Sbjct: 150 DGDLLAVQSAHEARNGQIVVARLGD-EVTVKRL-RRTTQGVELLPENPDYPVIRVAPEE 206
>gi|220935340|ref|YP_002514239.1| hypothetical protein Tgr7_2172 [Thioalkalivibrio sp. HL-EbGR7]
gi|219996650|gb|ACL73252.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 126
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
V P++ P G ++ + SM P + G I+I++ A V G ++ +
Sbjct: 15 VETPDV-DPGVGSGCATSEPFALRVLGDSMSPEFEHGVIIIVDPAGHVESGSYVVAR-HE 72
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ + + L+ GR L++L + +E+S ++ IA ++
Sbjct: 73 EEYLFRQLLIEEGRYY-LVALKDDH--RKLEISGVDAIAGVV 111
>gi|149915046|ref|ZP_01903575.1| putative phage repressor [Roseobacter sp. AzwK-3b]
gi|149811234|gb|EDM71071.1| putative phage repressor [Roseobacter sp. AzwK-3b]
Length = 220
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 16/211 (7%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
ER N++ + +ARKAG+ + KR G+ + S E KI A + +
Sbjct: 15 ERQNVSVAEIARKAGVPYDAVRDIKR----GKVQSTSWERAVKIAQALGIDLEDVSPATS 70
Query: 78 SD----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+ K + + + S G P G+ + P A
Sbjct: 71 KTKQVIEPASSKLQAMVSVYDVYASAGDGAVVIHEEPIGS----LAFPA-NYLRQLTQAN 125
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLISR-RGR 191
+ SMLP D+++L+ + + D L + G+ ++ K +
Sbjct: 126 WRDLAIISVKGDSMLPTLADDDVVMLDRSKRDLSYDGLFVIRDNGEALLVKRIQRAPTPG 185
Query: 192 SIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221
+ ++S N Y ++SDIE I R++WA
Sbjct: 186 HVMIISDNRALYDPVEKKLSDIEVIGRVIWA 216
>gi|87159694|dbj|BAE79430.1| temperature-sensitive lambda-repressor [Cloning vector pPL450]
gi|87159697|dbj|BAE79432.1| temperature-sensitive lambda-repressor [Cloning vector pPL451]
gi|87159700|dbj|BAE79434.1| temperature-sensitive lambda-repressor [Cloning vector pPL452]
gi|87159703|dbj|BAE79436.1| temperature-sensitive lambda-repressor [Cloning vector pCL476]
gi|87159706|dbj|BAE79438.1| temperature-sensitive lambda-repressor [Cloning vector pCL478]
gi|87159709|dbj|BAE79440.1| temperature-sensitive lambda-repressor [Cloning vector pND706]
gi|87159712|dbj|BAE79442.1| temperature-sensitive lambda-repressor [Cloning vector pND707]
Length = 237
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL ++ + + + + E E P+ + G F +
Sbjct: 66 LAKILK---VSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPKL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 179 DFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212
>gi|189346772|ref|YP_001943301.1| XRE family transcriptional regulator [Chlorobium limicola DSM 245]
gi|189340919|gb|ACD90322.1| transcriptional regulator, XRE family [Chlorobium limicola DSM 245]
Length = 242
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNGIYAI 133
L R T ++ +PL + + G D G + +P IYA+
Sbjct: 101 LHGGAERDTGEQLARVPL--YIAAVPAGTPDIAG---GEVEEYLDMPSSWIRGKKNIYAL 155
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
K SM+ + GD L++ + + G +++I G++ K L G +
Sbjct: 156 -------KVNGDSMIDIGIMHGDTLLVEATEKAKHG-QVVIASINGEVTVKTLSISVGGA 207
Query: 193 IDLMSLNCCYPVDTV 207
+ L+ N Y +
Sbjct: 208 VSLVPENPIYHPIAI 222
>gi|145636124|ref|ZP_01791794.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae PittHH]
gi|145270646|gb|EDK10579.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae PittHH]
Length = 218
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 31/179 (17%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P E I I A N + ++L + E + PLL +G
Sbjct: 51 RTPDLEDISIISKALNI-LPEVLAFDSNISEIKESICRY-PLLSPIQAGL---------- 98
Query: 111 TGNKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
W + G + A + + + SMLP + +GD+++++ I
Sbjct: 99 ----WTDIRSLEGFDGYEMIPSTAIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPT 153
Query: 167 CGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
G + + K L ++ I +L+ N +P + +I RI+
Sbjct: 154 PGKFVAAINGDNEATFKQYKELGTKTPEGIPHFELVPFNPMFPTLSSLNQEI----RII 208
>gi|2688959|gb|AAC82521.1| MucA [IncL/M plasmid R471a]
gi|44443459|gb|AAS47041.1| MucA [Enterobacter cloacae]
Length = 144
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%)
Query: 103 FFDS---GVFP---TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGD 155
FF FP G + N + + + H + SM GD
Sbjct: 19 FFAEPVAAGFPSPAAGYEANELNLHDYCVRH------PAATYFLRVSGDSMRDARIHDGD 72
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+L+++ A + G ++I + K L R LM LN +P + +
Sbjct: 73 VLVVDRAEEPRHGS-IVIASIDNEFTVKQLQLRPYPC--LMPLNPAFPPIRFDPEAL 126
>gi|154247615|ref|YP_001418573.1| putative phage repressor [Xanthobacter autotrophicus Py2]
gi|154161700|gb|ABS68916.1| putative phage repressor [Xanthobacter autotrophicus Py2]
Length = 227
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
D K ++E+ ++ + +G+ D G V P ++
Sbjct: 82 DRSKKRKPDQEVRVVGYIGAGAEVHTVDDHEKGAGLDLVQVDFP-----------VKHGT 130
Query: 138 TRHKTQDTSMLPLYRKGDIL-ILNSAIQVNC--GDRLLIKPRTGDIVAKVLISRR-GRSI 193
+ SMLP++ GD++ + A G ++K G K L
Sbjct: 131 VGVIVRGDSMLPMFEDGDLIGYIRDASGPEQLIGKICVVKVVDGPTYIKRLKRGTEPGLY 190
Query: 194 DLMSLNCCYPVDTVEMSDIEWIAR 217
L+S N +E DIEW AR
Sbjct: 191 TLVSANA----RDIEDVDIEWAAR 210
>gi|183448279|pdb|3BDN|A Chain A, Crystal Structure Of The Lambda Repressor
gi|183448280|pdb|3BDN|B Chain B, Crystal Structure Of The Lambda Repressor
Length = 236
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL ++ + + + + E E P+ + G F +
Sbjct: 65 LAKILK---VSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 118
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + T T P + G +++++ V G
Sbjct: 119 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSM-TAPTGSKPSFPDGMLILVDPEQAVEPG 177
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN YP
Sbjct: 178 DFCIARLGGDEFTFKKLIRGSGQVF-LQPLNPQYP 211
>gi|301170203|emb|CBW29807.1| unnamed protein product [Haemophilus influenzae 10810]
gi|301170317|emb|CBW29923.1| unnamed protein product [Haemophilus influenzae 10810]
Length = 221
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 113 NKWNTV----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
W + G + A + + + SMLP + +GD+++++ I G
Sbjct: 100 GLWTDIRSLEGFDGYEMIPSTAIASE-NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPG 158
Query: 169 DRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
+ + K L ++ I +L+ LN +P + +I RI+
Sbjct: 159 KFVAAINGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEI----RII 211
>gi|313885531|ref|ZP_07819281.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
gi|312619261|gb|EFR30700.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
Length = 213
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 64/174 (36%), Gaps = 24/174 (13%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKE------KEIPLLYFPPSGSGGFFDS 106
P+ +I KI + I +++ + K IP++ G+ D
Sbjct: 47 PNAGNISKIASYFGLKIDAMVEYDLQTQASAPSNLIPIKQTKLIPVIGRIACGAPILADQ 106
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
+ +++ P P I+ ++ + SM+P + ++++ V
Sbjct: 107 NII------DSIAFPVELLPSGEIFFLECR-------GDSMMPTIQDKALVMVRKQENVE 153
Query: 167 CGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G+ +++ + K + + G I L+ N +P ++ +D RI+
Sbjct: 154 DGEIAVVLLNGDEEATLKRIKRQ-GDLIMLLPDNTNHPPIVIQPTD---TIRIV 203
>gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616]
gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616]
Length = 270
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 28/219 (12%)
Query: 18 ERHNLTPSGLARKAGLDPTSF-------NK-SKRFGIEGR-----NRWPSTESIFKILAA 64
E +L+ + LA +AG+ T+ N+ SK R W +ES K +A
Sbjct: 37 EEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLESESGPKDASA 96
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNK---WNTVG 119
+ +P G + + PP + + D F G W
Sbjct: 97 AAAPQPGIYKIPEDQGNVLVWEHPD----DLPPDENRVWLDRYDYRFSAGTGLIQWEVRQ 152
Query: 120 VPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKP 175
+ A+ + SM P D++++++A + G ++
Sbjct: 153 KKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDG-KVYAIY 211
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE 213
G+ + K + + G SI L S+N YP V +E
Sbjct: 212 FEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELME 250
>gi|219883263|ref|YP_002478424.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
A6]
gi|219862108|gb|ACL42448.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
A6]
Length = 143
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + + T + SM GD LI++ A++
Sbjct: 27 AAGFPSPA---QDYFDGRIDLNAHLIKDVTSTYVVRVSGESMEGAGISDGDELIVDRALE 83
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G ++I G++ K L + L + N YP V
Sbjct: 84 PRDGS-VVIAVLDGELTIKRL-RITPTGVILQAENPAYPDIEVPA 126
>gi|86151756|ref|ZP_01069970.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315124259|ref|YP_004066263.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841385|gb|EAQ58633.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315017981|gb|ADT66074.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 209
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 20/209 (9%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G+ P +FN K + I L N +I
Sbjct: 12 DILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQ------ILNFLNGRNISINY 65
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + I LY + GG G +++ E+
Sbjct: 66 FFYGVSPKDQLECENKYRILKLYKTNASLGG---------GGINDSIDCSELIVDEKLLN 116
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 117 FFGGKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 175
Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L SLN Y + D I I+
Sbjct: 176 GVI-LHSLNPLYKDVFYKNGDFLLIGAIV 203
>gi|238021321|ref|ZP_04601747.1| hypothetical protein GCWU000324_01220 [Kingella oralis ATCC 51147]
gi|237868301|gb|EEP69307.1| hypothetical protein GCWU000324_01220 [Kingella oralis ATCC 51147]
Length = 226
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI-----------PLLYFPPSGSGG-- 102
E KI T ++ L+ L D + + + + PL S GG
Sbjct: 51 EQCIKIAEQTGVSLDWLI-LGKGDPKPQHQPQSAVQDYDDQDAVWVPLYDVYASAGGGED 109
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
+ + + + +++ + K + SM P GD++++N+A
Sbjct: 110 VWGEEI------EQYIPFSRVWLNQKNLHS--KNLSCVKVRGDSMEPTLNNGDVILVNTA 161
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
QV GD + + + K L + S+ + S N Y +T+ +
Sbjct: 162 RQV--GDGVFVVRIGSLLRVKRLQTLINGSLKISSDNPIYESETLNPKE 208
>gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15]
gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15]
Length = 216
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 29/148 (19%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRSPHNGIYAIQT 135
+ T + IPL G FP + + + G YAI
Sbjct: 83 RAGQPATSPGGEGIPL--LERIG-------PEFPHRVGEDDIRDRVALPEVSEGCYAI-- 131
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
M P R GD++I + G+ +L+ R G+ +L R R+ D+
Sbjct: 132 -----VAYGDFMAPTIRDGDLVIFRPGEEPQNGEVVLVTNRWGE---AILRRYRVRNGDI 183
Query: 196 ---------MSLNCCYPVDTVEMSDIEW 214
+ W
Sbjct: 184 VYSPDNATYSPFTPAPETRIIGTVAEVW 211
>gi|103485728|ref|YP_615289.1| putative phage repressor [Sphingopyxis alaskensis RB2256]
gi|98975805|gb|ABF51956.1| putative phage repressor [Sphingopyxis alaskensis RB2256]
Length = 222
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 21/219 (9%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNK------SKRFGIEGRNRWPSTESIFKILAA 64
A+DR+ + + L++ G +P + +R + R R I L
Sbjct: 10 AALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRAR------IAAYLGV 63
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
+ + + + R+ +P L S G P V
Sbjct: 64 SEAMLGGPVARVATPARSRGAGMILVPKLAIGASAGAGASVD-GEPV---EGEVAFNPKW 119
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKG-DILILNSAIQVNCGDRLLIKPRTGDIVAK 183
G + + + SM P G DIL+ S D + + ++ K
Sbjct: 120 LRDLGAD--PRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVK 177
Query: 184 VLISRR-GRSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
+ + ++S N Y D + +S I + R++W
Sbjct: 178 RIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVW 216
>gi|307610924|emb|CBX00541.1| phage repressor [Legionella pneumophila 130b]
Length = 229
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 27/203 (13%)
Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGR-NRWPS-TES--IFKILAATNETICQLLDLPFSD 79
GL RKA + T K+ R R +R P TE + L + + L D
Sbjct: 19 AKGLTRKALAELTGELKTSRINNYERGDRTPGPTEIKLLADALEVSASYLMCLTDNREGK 78
Query: 80 GRTTEKKEKEIPLLYFPPSGS-----GGFFDSGVFPTGNKWNTVGVPEIRSPHNG--IYA 132
+ IP+L + + D +K V V + G +A
Sbjct: 79 MTKSLGMGALIPVLDYKQAADPVTYIQKIKDD----IDSKVEFVPVSKAVGEKIGKNAFA 134
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR-- 189
+Q +D SM+P +R D++I++ GD ++ + +++ +
Sbjct: 135 LQ-------VRDESMMPEFRVDDVIIVDPDTCPKPGDFVIALVEGENEVIVRKYRQLSLS 187
Query: 190 --GRSIDLMSLNCCYPVDTVEMS 210
+ +L++LN + V+ S
Sbjct: 188 KKEQEFELVALNNDWADLRVDAS 210
>gi|304314715|ref|YP_003849862.1| hypothetical protein MTBMA_c09540 [Methanothermobacter marburgensis
str. Marburg]
gi|302588174|gb|ADL58549.1| conserved hypothetical protein [Methanothermobacter marburgensis
str. Marburg]
Length = 203
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 24/72 (33%)
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + SM P R G LI+ GD ++ K ++ K +
Sbjct: 98 ESQFGVDQLPMPAVVSGDSMYPTLRDGQELIVLKTDDYKVGDIVIAKHPEYGLIVKRVGK 157
Query: 188 RRGRSIDLMSLN 199
+ LMS N
Sbjct: 158 IEPTRVYLMSDN 169
>gi|254460292|ref|ZP_05073708.1| LexA repressor [Rhodobacterales bacterium HTCC2083]
gi|206676881|gb|EDZ41368.1| LexA repressor [Rhodobacteraceae bacterium HTCC2083]
Length = 232
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 27/175 (15%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEK-----------EIPLLYFPPSGSGGFFDS 106
I K+ + T + F G+ + E+P++ +G
Sbjct: 66 IVKLPDSLGMTPAGFVPRVFEGGKPDVPAPRNAQPVEAIHAMELPVMGQIAAGV------ 119
Query: 107 GVFPTGNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ + + V VP + S YA++ + SM+ GD +++
Sbjct: 120 PIEAISHASHNVAVPSQMLSGPGEHYALE-------VKGDSMIDAGINDGDTVVIRETNT 172
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ GD ++ + K G +I L + N Y ++ R++
Sbjct: 173 ADNGDIVVALVEDQEATLKRFHR-NGTTIALEAANPAYETRFFSHEQVKVQGRLV 226
>gi|83311030|ref|YP_421294.1| hypothetical protein amb1931 [Magnetospirillum magneticum AMB-1]
gi|82945871|dbj|BAE50735.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 241
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 16/115 (13%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSG--SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
L +IP+ +G F G P W G+
Sbjct: 98 LQFIHKLMHQPTTPSPQIPIRAVGRAGPAQEAFIGDG--PV--DWTERPAFLRGVDAYGV 153
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
Y TSM+P YR G ++ ++ G +++ ++ K
Sbjct: 154 Y----------VAGTSMVPRYRPGQLVFVDPHRPPVNGQGVVVVRYDNAVLIKEF 198
>gi|298369854|ref|ZP_06981170.1| peptidase, S24 family [Neisseria sp. oral taxon 014 str. F0314]
gi|298281314|gb|EFI22803.1| peptidase, S24 family [Neisseria sp. oral taxon 014 str. F0314]
Length = 233
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201
SM P++ G L +N+A + ++ G + K+L G I + S N
Sbjct: 150 DGDSMEPVFPDGATLGINTADKTVKDGKIYAVNHGGLLRTKILQKLPGNKIRIRSYNAEA 209
Query: 202 YPVDTVEMSDIEWIARILWAS 222
YP + + +DI I R+ W S
Sbjct: 210 YPDEEADAADINIIGRVFWWS 230
>gi|294010738|ref|YP_003544198.1| LexA-family protein [Sphingobium japonicum UT26S]
gi|292674068|dbj|BAI95586.1| LexA-family protein [Sphingobium japonicum UT26S]
Length = 223
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 10/167 (5%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
+ + E + R +P L S G D G
Sbjct: 57 LARYFGVAEEMLGGSAQRGAPPSRVRSLPSVVSVPRLSLGASAGPGSLDEDERAAG---- 112
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKP 175
+ H G+ + + + SM P GD +++N D + +
Sbjct: 113 LMAFDANWLRHLGVR--PQKISIIRVDGESMAPTLSDGDEIMVNHDDDAERLRDGVYVLR 170
Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220
G ++ K + R ++S N YP ++ + + + R++W
Sbjct: 171 LDGVLMVKRVAMGPRRGFFSVLSDNPHYPDWIDIDPALVVIVGRVVW 217
>gi|220936231|ref|YP_002515130.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
gi|219997541|gb|ACL74143.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
Length = 197
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 14/127 (11%)
Query: 94 YFPPSGSGGFFD-------SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
P+GS F + P +P + + + + S
Sbjct: 63 GLRPTGSDAAFSLPLVGRIAAGRPI------EAIPGEDTLDLADFLLGPGRYALRVVGES 116
Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
M+ GD +++ A GD ++ + K + R ++L + N
Sbjct: 117 MVGAGILDGDTVVVQQADSARDGDIVVALIDDEEATLKRIRHRPDGQVELRAENPAMAPL 176
Query: 206 TVEMSDI 212
+ + +
Sbjct: 177 VYDAARV 183
>gi|163736564|ref|ZP_02143983.1| LexA repressor [Phaeobacter gallaeciensis BS107]
gi|161390434|gb|EDQ14784.1| LexA repressor [Phaeobacter gallaeciensis BS107]
Length = 224
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + Q Q + + SM GDI+++ + GD ++ + K +
Sbjct: 128 SMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETAVADNGDVVVALVEGQEATLKRIYR 187
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ G +I L + N Y ++ R++
Sbjct: 188 K-GSTIALEAANPAYETRRYPQDQVKVQGRLV 218
>gi|296117066|ref|ZP_06835664.1| phage transcriptional regulator and peptidase [Gluconacetobacter
hansenii ATCC 23769]
gi|295976402|gb|EFG83182.1| phage transcriptional regulator and peptidase [Gluconacetobacter
hansenii ATCC 23769]
Length = 260
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
P +GSG G +V R+ + + + SM P + G
Sbjct: 127 PHAGSGAIVGETDSGAGEGHASVAAWHMPRAFVENYVSDPSALVILRVSGNSMEPDFMAG 186
Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSD 211
+ +++++A +V D + + +V K L+ I ++S+N YP+D V+++D
Sbjct: 187 ERVMVDTAHRVPSPDGVYVLWNGLGVVLKQLMLVPHSNPPRIRIISINPTYPMDEVDIAD 246
Query: 212 IEWIARIL 219
+ R++
Sbjct: 247 LVINGRVV 254
>gi|218510024|ref|ZP_03507902.1| peptidase S24 and S26 domain protein [Rhizobium etli Brasil 5]
Length = 237
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 71/212 (33%), Gaps = 33/212 (15%)
Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET- 68
W+ +D + + LAR+AG+ + NK + G+ P E + K+ +A ++
Sbjct: 7 WKRLDSRRIELGWSGAELARRAGIPYANINK----YLNGKIEQPRGEEMQKLASAIGKSA 62
Query: 69 --ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
+ L+L + E + + ++ +G+ D + + + +
Sbjct: 63 LWLRDGLELSDVEAAPIEGRLLPVAVVGKVEAGTFREVDDM------DQSERELLSLPAD 116
Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILI------LNSAIQVNCGDRLLI-K 174
A + SM P+ GD +I + + G +++ +
Sbjct: 117 DRFPSA---RLMAFDVSGDSMNDLRPRPIL-PGDRVICVSYEDVAHEAPLRDGMVVVVER 172
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
R G + I+L Y +
Sbjct: 173 SRDG----GQTREWSVKQIELYQDRTEYHPRS 200
>gi|254457839|ref|ZP_05071266.1| putative phage repressor [Campylobacterales bacterium GD 1]
gi|207085232|gb|EDZ62517.1| putative phage repressor [Campylobacterales bacterium GD 1]
Length = 219
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
SM P + DI+ +N A + G I+ G + K + R ID++
Sbjct: 131 EAINVSGDSMEPTFSYNDIVFINRAKTDLQRGGIFTIRTEAG-LFIKRVQKRIDGKIDII 189
Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
S N Y T+E+++IE I R++
Sbjct: 190 SDNQVYSTQTLELNEIEVIGRVV 212
>gi|126735652|ref|ZP_01751397.1| LexA repressor [Roseobacter sp. CCS2]
gi|126714839|gb|EBA11705.1| LexA repressor [Roseobacter sp. CCS2]
Length = 228
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 14/153 (9%)
Query: 72 LLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPH 127
+ IP+ G + P V VP+
Sbjct: 79 FTPRVIDGDKPDSTPVAAIPVDNGSVDLPMMGRI-AAGVPIEAISEASRNVSVPQSMVGA 137
Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
YA++ + SM+ GD++++ + GD ++ + K
Sbjct: 138 GDHYALE-------VKGDSMIDAGINDGDVVVIRETTVADNGDIVVALVEGHEATLKRF- 189
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
R G +I L + N Y ++ R++
Sbjct: 190 RRNGSAIALEAANPAYETRVFRDDQVKVQGRLV 222
>gi|301629308|ref|XP_002943785.1| PREDICTED: hypothetical protein LOC100486556 [Xenopus (Silurana)
tropicalis]
Length = 752
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 121 PEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
P + H + Y ++ D K + SM GD+L + + + G ++
Sbjct: 638 PILAQEHVDQAYCVEDSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIIV 697
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ D+ K L R I+L+ N YPV TV+ +
Sbjct: 698 ARLGD-DVTVKRL-RRTATGIELLPENPDYPVITVQPGE 734
>gi|222086522|ref|YP_002545056.1| hypothetical protein Arad_3094 [Agrobacterium radiobacter K84]
gi|221723970|gb|ACM27126.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 262
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 109 FPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
P G +P + N A + SM P Y GD +I++
Sbjct: 136 LPVGAGNVAGHKIIAEWVIP-VGYLRNEAKASPNHTIIMEVIGDSMQPTYMPGDRVIVDL 194
Query: 162 AIQVNCGDRLLIKPRT-GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
+ + D + + K L I ++S N TVE+ + I R
Sbjct: 195 SQNLMVTDTVYAISDGYSEPQIKRLQRIPFTQPSQIKIISDNPALETFTVELERLTIIGR 254
Query: 218 I 218
I
Sbjct: 255 I 255
>gi|149912077|ref|ZP_01900667.1| putative transcriptional regulator [Moritella sp. PE36]
gi|149804843|gb|EDM64881.1| putative transcriptional regulator [Moritella sp. PE36]
Length = 138
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
P G+Y SM P + G ++++N + N D + + ++
Sbjct: 32 PHWLRNEIGVY--PNNVFLMLVDGDSMQPTLKNGSMIMVNRDVD-NLSDGVYVMRHDNNL 88
Query: 181 VAKVLISRRGRSIDLMSLNCCYPV-----DTVEMSDIEWIARILWASQ 223
+ K L G I + S N Y ++ ++ I R++W Q
Sbjct: 89 LVKRLQMLPGGIIRVKSDNTMYDPWEITKSQLDGEELALIGRVVWTGQ 136
>gi|33601254|ref|NP_888814.1| LexA repressor [Bordetella bronchiseptica RB50]
gi|33575689|emb|CAE32767.1| LexA repressor [Bordetella bronchiseptica RB50]
Length = 242
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
G++A QT D K + SM R GD+L + A + G ++ + ++ K
Sbjct: 144 GLFA-QTPDYLLKVRGMSM----RDAGILEGDLLAVKRAAEARNGQIVVARLGD-EVTVK 197
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211
L + GR I+L+ N + V +D
Sbjct: 198 RLQRQNGR-IELLPENPDFAPIVVANTD 224
>gi|83951834|ref|ZP_00960566.1| LexA repressor [Roseovarius nubinhibens ISM]
gi|83836840|gb|EAP76137.1| LexA repressor [Roseovarius nubinhibens ISM]
Length = 232
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 40/215 (18%)
Query: 42 KRFGIEGRNRWPSTESIFKILAA-TNETICQLLDLPFSDGRTTEKKEKE----------- 89
KR +G PS + + + L + I +L+ G +
Sbjct: 15 KRIQRDGVP--PSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHRARALEIVKLPES 72
Query: 90 ---IPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRSPHNGI------------- 130
P F P G P + V +P + G+
Sbjct: 73 LGGAPAHGFTPRVIEGDRPEAGQPANARPVEVHALELPVMGRIAAGVPIEAINHVSHNVA 132
Query: 131 -----YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
+ Q + + SM GDI+++ + GD ++ + K
Sbjct: 133 VPGAMVSGQGNHYALEVKGDSMIEAGINDGDIVVIRETSTADNGDIVVALVEDQEATLKR 192
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
R G +I L + N Y + ++ R++
Sbjct: 193 FFRR-GGAIALEAANPAYETRVLPDDKVKVQGRLV 226
>gi|254785997|ref|YP_003073426.1| LexA repressor [Teredinibacter turnerae T7901]
gi|259494479|sp|C5BIH2|LEXA_TERTT RecName: Full=LexA repressor
gi|237685540|gb|ACR12804.1| LexA repressor [Teredinibacter turnerae T7901]
Length = 200
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 16/136 (11%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
S G + + IPL+ +GS + + + +P + D
Sbjct: 63 SRGIRLPEVQSGIPLVGRVAAGS------PILAQEHIEDYCDIPHN-------FFSPKAD 109
Query: 138 TRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDL 195
SM + GD+L ++ QV GD +++ ++ K R R+ ++L
Sbjct: 110 FLLTVHGMSMKDIGILDGDLLAVHKTDQVRNGD-IVVARIDNEVTVKRFKRERNRAQVEL 168
Query: 196 MSLNCCYPVDTVEMSD 211
N + V V++ D
Sbjct: 169 WPENPDFNVIEVDLRD 184
>gi|308389172|gb|ADO31492.1| putative regulatory protein [Neisseria meningitidis alpha710]
Length = 215
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM P + GD L +++A G+ + + G++ K L S ++++S N
Sbjct: 125 ISVKGDSMSPTFNHGDFLFVDTAADFYNGEGVYVFAAAGELRVKRLQSSVRGGMNVISDN 184
Query: 200 CCYPVDTVEMSDIEWIA 216
Y + + D W A
Sbjct: 185 RNYNAEYLPPDD--WAA 199
>gi|323941148|gb|EGB37334.1| peptidase S24 [Escherichia coli E482]
Length = 108
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 11 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 70
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 71 GQVF-LQPLNPQYP 83
>gi|313141175|ref|ZP_07803368.1| lambda repressor [Bifidobacterium bifidum NCIMB 41171]
gi|313133685|gb|EFR51302.1| lambda repressor [Bifidobacterium bifidum NCIMB 41171]
Length = 242
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 145 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 204
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 205 GQVF-LQPLNPQYP 217
>gi|261369111|ref|ZP_05981994.1| repressor protein CI [Subdoligranulum variabile DSM 15176]
gi|282568739|gb|EFB74274.1| repressor protein CI [Subdoligranulum variabile DSM 15176]
Length = 215
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|255016583|ref|ZP_05288709.1| Repressor protein CI [Bacteroides sp. 2_1_7]
Length = 246
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|254714851|ref|ZP_05176662.1| Repressor protein CI [Brucella ceti M644/93/1]
gi|261322650|ref|ZP_05961847.1| lambda repressor [Brucella ceti M644/93/1]
gi|261295340|gb|EEX98836.1| lambda repressor [Brucella ceti M644/93/1]
Length = 225
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|237707939|ref|ZP_04538420.1| lambda repressor [Bacteroides sp. 9_1_42FAA]
gi|229458045|gb|EEO63766.1| lambda repressor [Bacteroides sp. 9_1_42FAA]
Length = 225
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 128 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 187
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 188 GQVF-LQPLNPQYP 200
>gi|261351066|ref|ZP_05976483.1| repressor protein CI [Methanobrevibacter smithii DSM 2374]
gi|288860198|gb|EFC92496.1| repressor protein CI [Methanobrevibacter smithii DSM 2374]
Length = 212
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|224284017|ref|ZP_03647339.1| Repressor protein CI from prophage [Bifidobacterium bifidum NCIMB
41171]
Length = 281
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 184 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 243
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 244 GQVF-LQPLNPQYP 256
>gi|218558038|ref|YP_002390951.1| Repressor protein CI from phage origin [Escherichia coli S88]
gi|218364807|emb|CAR02497.1| Repressor protein CI from phage origin [Escherichia coli S88]
Length = 233
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 136 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 195
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 196 GQVF-LQPLNPQYP 208
>gi|215479925|ref|YP_002332313.1| c repressor [Pseudomonas phage MP38]
gi|169409293|gb|ACA57697.1| c repressor [Pseudomonas phage MP38]
Length = 219
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ + SM PL GD ++++ + + + + + AK + + +
Sbjct: 125 ANMSAVRIGGDSMEPLLSDGDTVMIDHSCGEVRDEAIYVIRLDDHLYAKRIQRQINGGLA 184
Query: 195 LMSLNCCYPVDTV---EMSDIEWIARILWA 221
++S N Y V ++ I+ I R++WA
Sbjct: 185 IISANSAYQTMYVSKQDLEAIDIIGRVVWA 214
>gi|209407392|emb|CAQ82008.1| repressor protein CI [Enterobacteria phage 2851]
Length = 219
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 122 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 181
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 182 GQVF-LQPLNPQYP 194
>gi|300922482|ref|ZP_07138595.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
gi|133874004|gb|ABO40696.1| prophage repressor [Enterobacteria phage CL707]
gi|300421169|gb|EFK04480.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
Length = 237
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|117623333|ref|YP_852246.1| putative CI repressor of bacteriophage [Escherichia coli APEC O1]
gi|168752471|ref|ZP_02777493.1| CI protein [Escherichia coli O157:H7 str. EC4113]
gi|187776111|ref|ZP_02800576.2| CI protein [Escherichia coli O157:H7 str. EC4196]
gi|189010451|ref|ZP_02807272.2| CI protein [Escherichia coli O157:H7 str. EC4076]
gi|189402456|ref|ZP_02782534.2| CI protein [Escherichia coli O157:H7 str. EC4401]
gi|189404513|ref|ZP_02790006.2| CI protein [Escherichia coli O157:H7 str. EC4501]
gi|189405171|ref|ZP_02813660.2| CI protein [Escherichia coli O157:H7 str. EC869]
gi|189405760|ref|ZP_02824140.2| CI protein [Escherichia coli O157:H7 str. EC508]
gi|208809661|ref|ZP_03251998.1| CI protein [Escherichia coli O157:H7 str. EC4206]
gi|208817192|ref|ZP_03258284.1| CI protein [Escherichia coli O157:H7 str. EC4045]
gi|208820684|ref|ZP_03261004.1| CI protein [Escherichia coli O157:H7 str. EC4042]
gi|209400501|ref|YP_002271236.1| repressor protein [Escherichia coli O157:H7 str. EC4115]
gi|209427751|ref|YP_002274162.1| putative bacteriophage CI repressor [Enterobacteria phage YYZ-2008]
gi|217328107|ref|ZP_03444189.1| repressor protein [Escherichia coli O157:H7 str. TW14588]
gi|227886483|ref|ZP_04004288.1| repressor protein CI [Escherichia coli 83972]
gi|237706857|ref|ZP_04537338.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|254793774|ref|YP_003078611.1| repressor protein CI [Escherichia coli O157:H7 str. TW14359]
gi|300935255|ref|ZP_07150273.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|300975627|ref|ZP_07173106.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
gi|300982354|ref|ZP_07176052.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
gi|301046509|ref|ZP_07193662.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
gi|302393138|ref|YP_003828968.1| CI protein [Stx2 converting phage II]
gi|32128133|dbj|BAC77937.1| CI protein [Stx1 converting phage]
gi|32128300|dbj|BAC78103.1| CI protein [Stx2 converting phage II]
gi|115512457|gb|ABJ00532.1| putative CI repressor of bacteriophage [Escherichia coli APEC O1]
gi|187768994|gb|EDU32838.1| CI protein [Escherichia coli O157:H7 str. EC4196]
gi|188013689|gb|EDU51811.1| CI protein [Escherichia coli O157:H7 str. EC4113]
gi|189000092|gb|EDU69078.1| CI protein [Escherichia coli O157:H7 str. EC4076]
gi|189355469|gb|EDU73888.1| CI protein [Escherichia coli O157:H7 str. EC4401]
gi|189365099|gb|EDU83515.1| CI protein [Escherichia coli O157:H7 str. EC4501]
gi|189371589|gb|EDU90005.1| CI protein [Escherichia coli O157:H7 str. EC869]
gi|189378456|gb|EDU96872.1| CI protein [Escherichia coli O157:H7 str. EC508]
gi|208729462|gb|EDZ79063.1| CI protein [Escherichia coli O157:H7 str. EC4206]
gi|208730811|gb|EDZ79501.1| CI protein [Escherichia coli O157:H7 str. EC4045]
gi|208740807|gb|EDZ88489.1| CI protein [Escherichia coli O157:H7 str. EC4042]
gi|208970819|gb|ACI32363.1| putative bacteriophage CI repressor [Enterobacteria phage YYZ-2008]
gi|209161901|gb|ACI39334.1| repressor protein [Escherichia coli O157:H7 str. EC4115]
gi|217318534|gb|EEC26960.1| repressor protein [Escherichia coli O157:H7 str. TW14588]
gi|226898067|gb|EEH84326.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227836687|gb|EEJ47153.1| repressor protein CI [Escherichia coli 83972]
gi|254593174|gb|ACT72535.1| repressor protein CI [Escherichia coli O157:H7 str. TW14359]
gi|300301529|gb|EFJ57914.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
gi|300307191|gb|EFJ61711.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
gi|300410290|gb|EFJ93828.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
gi|300459507|gb|EFK23000.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|315287509|gb|EFU46920.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
gi|315293071|gb|EFU52423.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
gi|323957980|gb|EGB53692.1| peptidase S24 [Escherichia coli H263]
Length = 231
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 134 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 193
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 194 GQVF-LQPLNPQYP 206
>gi|210610265|ref|ZP_03288320.1| hypothetical protein CLONEX_00506 [Clostridium nexile DSM 1787]
gi|228474131|ref|ZP_04058871.1| repressor protein CI [Capnocytophaga gingivalis ATCC 33624]
gi|239622955|ref|ZP_04665986.1| lambda cI857 repressor [Clostridiales bacterium 1_7_47_FAA]
gi|254708517|ref|ZP_05170345.1| Repressor protein CI [Brucella pinnipedialis M163/99/10]
gi|261316018|ref|ZP_05955215.1| repressor protein [Brucella pinnipedialis M163/99/10]
gi|261343115|ref|ZP_05970973.1| repressor protein CI [Enterobacter cancerogenus ATCC 35316]
gi|282875750|ref|ZP_06284618.1| peptidase, S24 family [Staphylococcus epidermidis SK135]
gi|283836773|ref|ZP_06356514.1| repressor protein CI [Citrobacter youngae ATCC 29220]
gi|208651|gb|AAA99919.1| lambda repressor [Cloning vector pNO3097]
gi|2961156|gb|AAC27033.1| lambda repressor [site-specific excision vector pFLP2]
gi|4732119|gb|AAD28615.1| repressor protein [Cloning vector pWD42-09]
gi|4928118|gb|AAD33415.1| lambda cI857 repressor [Cloning vector pWDYcos1.0.1]
gi|16209070|gb|AAL09847.1| cI [CRIM helper plasmid pAH57]
gi|16209082|gb|AAL09855.1| cI [CRIM helper plasmid pAH69]
gi|16209093|gb|AAL09862.1| cI [CRIM helper plasmid pAH83]
gi|16209106|gb|AAL09870.1| cI [CRIM helper plasmid pAH121]
gi|16209112|gb|AAL09874.1| cI [CRIM helper plasmid pAH122]
gi|16209120|gb|AAL09879.1| cI [CRIM helper plasmid pAH123]
gi|16209126|gb|AAL09883.1| cI [CRIM helper plasmid pAH129]
gi|16209132|gb|AAL09888.1| cI [CRIM helper plasmid pAH130]
gi|16209138|gb|AAL09892.1| cI [CRIM helper plasmid pAH131]
gi|16209182|gb|AAL09915.1| cI [CRIM helper plasmid pINT-ts]
gi|47027959|gb|AAT08997.1| lambda repressor [Flp expression vector pFLP3]
gi|55975982|gb|AAV68247.1| repressor [Broad host range Red recombinase expression vector
pRKcIRed]
gi|154814537|gb|ABS87301.1| CI [Cloning vector pCPP5264]
gi|157955302|gb|ABW06020.1| cI857 [Triparental mating vector pCD13SK-Flp-oriT]
gi|164470280|gb|ABY57979.1| CI857 [Cloning vector pFlpAB-3]
gi|164470289|gb|ABY57987.1| CI857 [Cloning vector pFlpAB-4]
gi|164600695|gb|ABY61785.1| CI857 [Flp expression vector pFlpAB-5]
gi|197091802|gb|ACH42113.1| CI857 [Vector pCD13SK-Flp-oriT-Easd]
gi|210152569|gb|EEA83575.1| hypothetical protein CLONEX_00506 [Clostridium nexile DSM 1787]
gi|215789977|gb|ACJ70060.1| CI857 [Cloning vector pFlp-AB7]
gi|225423174|gb|ACN91079.1| lambda repressor [Site-specific excision vector pBBR1_FLP2]
gi|228274403|gb|EEK13256.1| repressor protein CI [Capnocytophaga gingivalis ATCC 33624]
gi|239522634|gb|EEQ62500.1| lambda cI857 repressor [Clostridiales bacterium 1_7_47FAA]
gi|261305044|gb|EEY08541.1| repressor protein [Brucella pinnipedialis M163/99/10]
gi|281295465|gb|EFA87991.1| peptidase, S24 family [Staphylococcus epidermidis SK135]
gi|288314592|gb|EFC53530.1| repressor protein CI [Enterobacter cancerogenus ATCC 35316]
gi|291067231|gb|EFE05340.1| repressor protein CI [Citrobacter youngae ATCC 29220]
Length = 237
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|26247415|ref|NP_753455.1| repressor protein [Escherichia coli CFT073]
gi|26107816|gb|AAN80015.1|AE016759_289 Repressor protein [Escherichia coli CFT073]
Length = 140
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 43 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 102
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 103 GQVF-LQPLNPQYP 115
>gi|9633419|ref|NP_050522.1| similar to CI repressor [Enterobacteria phage VT2-Sakai]
gi|5881615|dbj|BAA84306.1| cI [Enterobacteria phage VT2-Sakai]
Length = 169
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 72 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 131
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 132 GQVF-LQPLNPQYP 144
>gi|116672382|ref|YP_833315.1| SOS mutagenesis protein UmuD [Arthrobacter sp. FB24]
gi|116612491|gb|ABK05215.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Arthrobacter sp. FB24]
Length = 143
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ +P+ + + T + SM GD LI+N A+
Sbjct: 27 AAGYPSPA---QDYFDGRIDLNEHLIKDITSTYIVRVSGDSMEGAGISDGDELIVNRALD 83
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G ++I G++ K L + L + N YP V
Sbjct: 84 PKDGS-VVIAVLDGELTIKRL-RVTASGVVLQADNPRYPDIRVPA 126
>gi|149911913|ref|ZP_01900512.1| putative transcriptional regulator [Moritella sp. PE36]
gi|149805006|gb|EDM65034.1| putative transcriptional regulator [Moritella sp. PE36]
Length = 250
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM P + G ++++N + N D + + +++ K L G I
Sbjct: 155 PNNVFLMLVDGDSMQPTLKNGSMIMVNRDVD-NLSDGVYVMRHDNNLLVKRLQMLPGGII 213
Query: 194 DLMSLNCCYPV-----DTVEMSDIEWIARILWASQ 223
+ S N Y ++ ++ I R++W Q
Sbjct: 214 RVKSDNTMYDPWEITKSQLDGEELALIGRVVWTGQ 248
>gi|223934043|ref|ZP_03625996.1| putative phage repressor [Streptococcus suis 89/1591]
gi|223897300|gb|EEF63708.1| putative phage repressor [Streptococcus suis 89/1591]
Length = 251
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G+G + + T+ +P D SM P Y GD
Sbjct: 139 ASAGTGQYLNDVKV------ETIELPIEVD----------ADFVVPIYGDSMEPEYHSGD 182
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+ + ++ ++ GD + + G+ K L + L SLN Y
Sbjct: 183 YVFVKLSVDLSDGD-IGVFAYNGEAYIKQL-RITDQGAYLHSLNPDYDN 229
>gi|332855796|ref|ZP_08436047.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
6013150]
gi|332870031|ref|ZP_08439007.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
6013113]
gi|332727271|gb|EGJ58715.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
6013150]
gi|332732531|gb|EGJ63782.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
6013113]
Length = 213
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
++ + E++ ++L T + + ++ + + +P+L + +G+ + V
Sbjct: 43 PKYENLEALCQVLDTTIDYLKYGVNNNEQSVKDLRPITRMLPVLDYVQAGNW----TNVR 98
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VN 166
+ +P + Q TS P ++ GD++ ++ I V
Sbjct: 99 SIQPHEIELWLPAPPEAGRNSF-------YMIVQGTSNTPHFKDGDLICIDPDIPLEYVQ 151
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +++ K L+ +++ L +LN + + + + +
Sbjct: 152 TG-EMIVAMCDDQATFKALVREN-KNMYLQALNGNFHPNIIPLKE 194
>gi|226328124|ref|ZP_03803642.1| hypothetical protein PROPEN_02015 [Proteus penneri ATCC 35198]
gi|225203828|gb|EEG86182.1| hypothetical protein PROPEN_02015 [Proteus penneri ATCC 35198]
Length = 214
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 5/140 (3%)
Query: 81 RTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+T+ + + L+ + +G GGF +S FP + ++ +
Sbjct: 64 PSTQNEHTTLKLMDVYAKAGPGGFINSD-FP--DTIKSIEFSPEKVFELFGRKSLKGIEI 120
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM P D++ +++ + GD + I + K L +GR + + S N
Sbjct: 121 INISGDSMSPAINPRDVVFVDTHNEFFDGDGVYIFSFENSLFIKRLQRVKGRKLAVKSDN 180
Query: 200 CCYPVDTVEMSDIEWIARIL 219
Y +E S++ + RI+
Sbjct: 181 PAYETFYIEESEM-YDLRII 199
>gi|254511805|ref|ZP_05123872.1| LexA repressor [Rhodobacteraceae bacterium KLH11]
gi|221535516|gb|EEE38504.1| LexA repressor [Rhodobacteraceae bacterium KLH11]
Length = 232
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD++++ + GD ++ + K R G++I
Sbjct: 142 GEHYALEVRGDSMIEAGINDGDVVVIRETSAADNGDIVVALVEDQEATLKRFFRR-GQAI 200
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + ++ R++
Sbjct: 201 ALEAANPAYETRVLPEDKVKVQGRLV 226
>gi|6729334|dbj|BAA89781.1| repressor protein [Enterobacteria phage VT2-Sakai]
Length = 191
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 94 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 153
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 154 GQVF-LQPLNPQYP 166
>gi|6249458|emb|CAB60047.1| hypothetical protein [Legionella pneumophila]
Length = 244
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGR--- 191
+D SM P ++ DILI++ Q N GD ++ + +I+ +
Sbjct: 147 NAFALAVKDESMAPEFKFDDILIVDPDTQPNPGDYIVARLENEPEIIIRKFKQLSVSKEK 206
Query: 192 -SIDLMSLNCCYPVDTVEMS 210
+L+++N +P +
Sbjct: 207 PEFELVAINNDWPDVKISKE 226
>gi|52841492|ref|YP_095291.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52628603|gb|AAU27344.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 246
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGR--- 191
+D SM P ++ DILI++ Q N GD ++ + +I+ +
Sbjct: 149 NAFALAVKDESMAPEFKFDDILIVDPDTQPNPGDYIVARLENEPEIIIRKFKQLSVSKEK 208
Query: 192 -SIDLMSLNCCYPVDTVEMS 210
+L+++N +P +
Sbjct: 209 PEFELVAINNDWPDVKISKE 228
>gi|15830439|ref|NP_309212.1| cI repressor protein [Escherichia coli O157:H7 str. Sakai]
gi|7649844|dbj|BAA94122.1| CI protein [Enterobacteria phage VT2-Sakai]
gi|13360645|dbj|BAB34608.1| putative cI repressor protein [Escherichia coli O157:H7 str. Sakai]
Length = 217
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 120 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 180 GQVF-LQPLNPQYP 192
>gi|320659907|gb|EFX27453.1| repressor protein CI [Escherichia coli O55:H7 str. USDA 5905]
Length = 217
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 120 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 180 GQVF-LQPLNPQYP 192
>gi|114778581|ref|ZP_01453408.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1]
gi|114551170|gb|EAU53730.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1]
Length = 194
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 9/154 (5%)
Query: 53 PSTESIFKILAA-TNETICQLLD-LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
PS I ++L + ++ QL+ L + + + +P F G FP
Sbjct: 24 PSYAGIAELLGMKSRASVQQLVSRLKENGYLDNKVPRRLVPTSKFLERPLVGS-APAGFP 82
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
+ + + S + + + + SM+ GDI+I+ + D
Sbjct: 83 SPA---EEALGDAISIDDYLVEHPSATVLVQVDGDSMIGAGINSGDIMIVRRESRPRV-D 138
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
R+++ GD K L + + L N YP
Sbjct: 139 RIIVAIVDGDFTIKYL-RKDKQGYFLEPANPAYP 171
>gi|91210315|ref|YP_540301.1| putative CI repressor of bacteriophage [Escherichia coli UTI89]
gi|195939328|ref|ZP_03084710.1| putative CI repressor of bacteriophage [Escherichia coli O157:H7
str. EC4024]
gi|209447145|ref|YP_002274230.1| repressor [Stx2-converting phage 1717]
gi|215486128|ref|YP_002328559.1| predicted repressor protein [Escherichia coli O127:H6 str.
E2348/69]
gi|261225735|ref|ZP_05940016.1| repressor protein CI [Escherichia coli O157:H7 str. FRIK2000]
gi|261258459|ref|ZP_05950992.1| repressor protein CI [Escherichia coli O157:H7 str. FRIK966]
gi|291281724|ref|YP_003498542.1| CI protein [Escherichia coli O55:H7 str. CB9615]
gi|302861176|ref|YP_003848877.1| CI repressor protein [Stx1 converting phage]
gi|23343453|emb|CAC95084.1| repressor [Enterobacteria phage Nil2]
gi|91071889|gb|ABE06770.1| putative CI repressor of bacteriophage [Escherichia coli UTI89]
gi|209361124|gb|ACI43117.1| repressor [Stx2-converting phage 1717]
gi|215264200|emb|CAS08544.1| predicted repressor protein [Escherichia coli O127:H6 str.
E2348/69]
gi|290761597|gb|ADD55558.1| CI protein [Escherichia coli O55:H7 str. CB9615]
gi|294489683|gb|ADE88439.1| peptidase, S24 (LexA) family [Escherichia coli IHE3034]
gi|307553159|gb|ADN45934.1| putative CI repressor of bacteriophage [Escherichia coli ABU 83972]
gi|307627374|gb|ADN71678.1| repressor protein CI [Escherichia coli UM146]
gi|320637900|gb|EFX07682.1| repressor protein CI [Escherichia coli O157:H7 str. G5101]
gi|320643308|gb|EFX12497.1| repressor protein CI [Escherichia coli O157:H- str. 493-89]
gi|320648651|gb|EFX17292.1| repressor protein CI [Escherichia coli O157:H- str. H 2687]
gi|320654244|gb|EFX22302.1| repressor protein CI [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320664729|gb|EFX31869.1| repressor protein CI [Escherichia coli O157:H7 str. LSU-61]
gi|323953159|gb|EGB49025.1| peptidase S24 [Escherichia coli H252]
Length = 217
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 120 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 180 GQVF-LQPLNPQYP 192
>gi|86153305|ref|ZP_01071509.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|85843031|gb|EAQ60242.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni HB93-13]
Length = 209
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 20/209 (9%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G+ P +FN K + I L N +I
Sbjct: 12 DILASEGKRDLKTKDIAKELGIHPDTFNSIKFRNSIPYPQ------ILNFLNGRNISINY 65
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + I LY + GG G +++ E+
Sbjct: 66 FFYGVSPKDQLECENKYRILKLYKTNASLGG---------GGINDSIDCSELIVDEKLLN 116
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 117 FFGGKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 175
Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L SLN Y + D I I+
Sbjct: 176 GVI-LHSLNPLYKDVFYKNGDFLLIGAIV 203
>gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60]
gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60]
Length = 222
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 47/173 (27%)
Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIE----GRNRWPSTESIFKILA------------A 64
LT LA+K+G SK+ I GRN ES K++ A
Sbjct: 17 GLTQVELAKKSG--------SKQGAISDLESGRN-----ESSTKLVEMAEAMGVSAKWLA 63
Query: 65 TNET--ICQLLDLPF-SDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGV 120
T E + Q + +P S+ +K ++ P+L + +G FD N ++
Sbjct: 64 TGEGNMLDQDIKVPSISNVDFIPQKIRKAPVLNWVQAGHPADVFD-------NGYDEYEY 116
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
+Y + + SM P + +GD +++++ Q GD ++
Sbjct: 117 FYDEGYGLQVYWL-------YVRGDSMNPEFFEGDKILVDAERQARAGDYVIA 162
>gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21]
gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21]
Length = 209
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 23/127 (18%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
+ K PLL P F D + + VP++ G YAI
Sbjct: 81 AADQPKVSRAPLLDVIP---DSFPDDPGAVS----RYISVPDLP---EGCYAI------- 123
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGR--SIDLMS 197
M P R GD++I GD +++ R G+ +L R + I L
Sbjct: 124 VCYGDFMSPTIRDGDVVIFRPESGQKKSGDIIIVHNRWGEP---ILRRYRVKDDEIYLAP 180
Query: 198 LNCCYPV 204
N Y
Sbjct: 181 DNPAYAP 187
>gi|87303597|ref|ZP_01086376.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 5701]
gi|87281821|gb|EAQ73785.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 5701]
Length = 153
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + V + + + + SM+ GD+LI++ +++
Sbjct: 37 AAGFPSPAD-DYVE--TGIDLNEQLIRHPSSTFFLRVSGDSMIGAGIHHGDLLIVDRSVE 93
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R+++ G K L+ +GR + L + + YP + +D
Sbjct: 94 PRHG-RVVVAAVEGAFTLKRLVRHQGR-LRLEAAHPAYPPLELSDAD 138
>gi|320191842|gb|EFW66490.1| prophage repressor [Escherichia coli O157:H7 str. EC1212]
gi|326347828|gb|EGD71544.1| prophage repressor [Escherichia coli O157:H7 str. 1044]
Length = 108
Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 11 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 70
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 71 GQVF-LQPLNPQYP 83
>gi|152985545|ref|YP_001349953.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
gi|150960703|gb|ABR82728.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
Length = 237
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
SM P+ G + ++++ + GD + G + K+L G
Sbjct: 141 PASAACVTVSGNSMEPVLPDGSTVGVDTSARTIRDGD-MYAFDHDGQLRVKLLYRLPGGG 199
Query: 193 IDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
+ + S N +P + E + I I R+ W S
Sbjct: 200 LRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234
>gi|225025512|ref|ZP_03714704.1| hypothetical protein EIKCOROL_02412 [Eikenella corrodens ATCC
23834]
gi|224941796|gb|EEG23005.1| hypothetical protein EIKCOROL_02412 [Eikenella corrodens ATCC
23834]
Length = 251
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 108 VFPTGNKWNTVGVPEIRSP---HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
FP GN P + + A + K + SM P+ D +++
Sbjct: 130 GFPVGN--EEPLFPMAFRRFWIEHYLNADPKDLSVIKVRGDSMEPVLCNNDNILV--NHA 185
Query: 165 VNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219
G+ L + G++V K G + L S N Y +++++ +E + R+
Sbjct: 186 KRKPGNGLFVVRIGGELVVKYTQIMPGSKLLLKSANEIYEPFELDVAEPDADVEIVGRVE 245
Query: 220 W 220
W
Sbjct: 246 W 246
>gi|121594652|ref|YP_986548.1| LexA repressor [Acidovorax sp. JS42]
gi|222110746|ref|YP_002553010.1| lexa repressor [Acidovorax ebreus TPSY]
gi|171769452|sp|A1W897|LEXA_ACISJ RecName: Full=LexA repressor
gi|254809095|sp|B9MI78|LEXA_DIAST RecName: Full=LexA repressor
gi|120606732|gb|ABM42472.1| SOS-response transcriptional repressor, LexA [Acidovorax sp. JS42]
gi|221730190|gb|ACM33010.1| SOS-response transcriptional repressor, LexA [Acidovorax ebreus
TPSY]
Length = 224
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + + + G ++ + D+ K L R G +I+L+ N YPV VE +
Sbjct: 150 DGDLLAVQATREARNGQIIVARLGD-DVTVKRL-RRTGSAIELLPENPDYPVIRVEPGE 206
>gi|91787695|ref|YP_548647.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24
[Polaromonas sp. JS666]
gi|91696920|gb|ABE43749.1| phage repressor protein, Serine peptidase, MEROPS family S24
[Polaromonas sp. JS666]
Length = 207
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 17/163 (10%)
Query: 60 KILAATNETICQLLDL-PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
K+ ++ +L+ EIPL+ +G+ D+ +G + V
Sbjct: 50 KVAELLGISVAELVSGDSRMSPGLGIDVRAEIPLISEVHAGNYTAIDNFQPRSGFEMVPV 109
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIK 174
VP ++ Q + SM+ + + +G IL++ + GD +++
Sbjct: 110 TVP-----------VKRQTFALRVHGDSMVGITGDSFPEGSILVVEPELTAEPGDYVIVL 158
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
K L+ L LN YPV + ++I + R
Sbjct: 159 NSKNQTTFKQLVKDGADYY-LKPLNTRYPVKPLGSAEIIGVVR 200
>gi|159044352|ref|YP_001533146.1| LexA repressor [Dinoroseobacter shibae DFL 12]
gi|189046535|sp|A8LMK0|LEXA_DINSH RecName: Full=LexA repressor
gi|157912112|gb|ABV93545.1| lexA repressor [Dinoroseobacter shibae DFL 12]
Length = 231
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 39/207 (18%)
Query: 42 KRFGIEGRNRWPSTESIFKILAA-TNETICQLLDLPFSDG--RTTEKKEKEIPLLYFPPS 98
KR +G PS + + L + I +L+ G R K + I ++ P +
Sbjct: 15 KRLQRDGVP--PSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHKARAIEIVKLPEA 72
Query: 99 ----GSGGFF------DSGVFPTGN----KWNTVGVP-----EIRSPHNGIYAI------ 133
GGF D P G + V +P +P I +
Sbjct: 73 LMGSMQGGFAPQVIDGDRLDPPVGAMPVSGIHAVELPVMGKIAAGTPIEAISEVSHTVAV 132
Query: 134 -------QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+ + + SM+ GDI+++ GD ++ + K L
Sbjct: 133 PGQMMRQDAEHYALEVKGDSMINAGINNGDIVVIRETSVAESGDIVVALVDGHEATLKTL 192
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+RG +I L + N Y +
Sbjct: 193 -RKRGNAIALEAANPAYETRVYPAEMV 218
>gi|307943610|ref|ZP_07658954.1| transcriptional regulator [Roseibium sp. TrichSKD4]
gi|307773240|gb|EFO32457.1| transcriptional regulator [Roseibium sp. TrichSKD4]
Length = 234
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 14/177 (7%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP------SGSGGFFDS 106
PS + +I A N ++ L + + P +G G +
Sbjct: 56 PSLDKATQIARACNVSLEWLATGQGPKHPRQASEVHAADFIGIPRYDAHLSAGGGTWNAD 115
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
P + + + SM PL DI++++ +
Sbjct: 116 KERPL----DHIPFTREFLAKRLHKSKPRDLVILMVNGDSMEPLINDDDIVMVD-QSKKR 170
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILW 220
D + K + +++ S N YP + + +++D+ I +++W
Sbjct: 171 LEDGIFAFVFDDLAKVKRFRTLANGDLEIRSDNPLYPPEVLQKEQLNDLNIIGKVVW 227
>gi|18158895|pdb|1KCA|A Chain A, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158896|pdb|1KCA|B Chain B, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158897|pdb|1KCA|C Chain C, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158898|pdb|1KCA|D Chain D, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158899|pdb|1KCA|E Chain E, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158900|pdb|1KCA|F Chain F, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158901|pdb|1KCA|G Chain G, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
gi|18158902|pdb|1KCA|H Chain H, Crystal Structure Of The Lambda Repressor C-Terminal
Domain Octamer
Length = 109
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 12 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 71
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 72 GQVF-LQPLNPQYP 84
>gi|256160568|ref|ZP_05458243.1| Repressor protein CI from prophage [Brucella ceti M490/95/1]
Length = 153
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 56 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 115
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 116 GQVF-LQPLNPQYP 128
>gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia
multivorans ATCC 17616]
gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia
multivorans ATCC 17616]
Length = 246
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 28/219 (12%)
Query: 18 ERHNLTPSGLARKAGLDPTSF-------NK-SKRFGIEGR-----NRWPSTESIFKILAA 64
E +L+ + LA +AG+ T+ N+ SK R W +ES K +A
Sbjct: 13 EEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLESESGPKDASA 72
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNK---WNTVG 119
+ +P G + + PP + + D F G W
Sbjct: 73 AAAPQPGIYKIPEDQGNVLVWEHPD----DLPPDENRVWLDRYDYRFSAGTGLIQWEVRQ 128
Query: 120 VPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKP 175
+ A+ + SM P D++++++A + G ++
Sbjct: 129 KKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDG-KVYAIY 187
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE 213
G+ + K + + G SI L S+N YP V +E
Sbjct: 188 FEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELME 226
>gi|148653141|ref|YP_001280234.1| putative prophage repressor [Psychrobacter sp. PRwf-1]
gi|148572225|gb|ABQ94284.1| putative prophage repressor [Psychrobacter sp. PRwf-1]
Length = 219
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 33/161 (20%)
Query: 58 IFKILAATNETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGS-GGFFDSGVF 109
+ K L ++ L+ S+ + + + + P+L + +G +FD +
Sbjct: 54 LAKAL---GVSVDWLVTGRESNNHSFSNVRPVDKHEIRMAPVLNYVQAGEFCEYFDDAIA 110
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
+ P Y ++ SM+P + +++++N +Q + GD
Sbjct: 111 ------DRFE-PVSTKHPKNSYWVELN-------GLSMIPDFYPEELVLINPDMQPSPGD 156
Query: 170 RLLIKPRTGD--IVAKVLISR-----RGRSIDLMSLNCCYP 203
++ K + G+ + K R +L+ LN +P
Sbjct: 157 YVVAK-KAGENAVTFKKWRPRGFDDDGVEYCELVPLNPDFP 196
>gi|33592856|ref|NP_880500.1| LexA repressor [Bordetella pertussis Tohama I]
gi|44888097|sp|Q7VRY0|LEXA_BORPE RecName: Full=LexA repressor
gi|44888099|sp|Q7WCK0|LEXA_BORBR RecName: Full=LexA repressor
gi|33572504|emb|CAE42080.1| LexA repressor [Bordetella pertussis Tohama I]
gi|332382269|gb|AEE67116.1| LexA repressor [Bordetella pertussis CS]
Length = 216
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
G++A QT D K + SM +GD+L + A + G ++ + ++ K L
Sbjct: 118 GLFA-QTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGD-EVTVKRLQR 175
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD 211
+ GR I+L+ N + V +D
Sbjct: 176 QNGR-IELLPENPDFAPIVVANTD 198
>gi|265998933|ref|ZP_06111490.1| repressor protein [Brucella ceti M490/95/1]
gi|262553669|gb|EEZ09391.1| repressor protein [Brucella ceti M490/95/1]
Length = 153
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 56 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 115
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 116 GQVF-LQPLNPQYP 128
>gi|256855230|ref|ZP_05560588.1| temperature-sensitive lambda-repressor [Enterococcus faecalis T8]
gi|256709444|gb|EEU24494.1| temperature-sensitive lambda-repressor [Enterococcus faecalis T8]
Length = 169
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 72 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 131
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 132 GQVF-LQPLNPQYP 144
>gi|218529602|ref|YP_002420418.1| phage repressor [Methylobacterium chloromethanicum CM4]
gi|218521905|gb|ACK82490.1| putative phage repressor [Methylobacterium chloromethanicum CM4]
Length = 244
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT------GDIVAKVLISRRGRSIDLMS 197
S+ P Y G + ++ + D ++++ R G K L++R + L
Sbjct: 155 GDSISPAYEDGTPIYVDPHRRPQPRDYVVVELRGERDGEPGPAFVKRLVARGAGKLRLEQ 214
Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
N +D ++ +++ + R++
Sbjct: 215 HNPSGQLDPIDETEVVRVHRVI 236
>gi|291295793|ref|YP_003507191.1| putative phage repressor [Meiothermus ruber DSM 1279]
gi|290470752|gb|ADD28171.1| putative phage repressor [Meiothermus ruber DSM 1279]
Length = 210
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 31/209 (14%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQLLDLP 76
+ L+ +A AG+ T R + ST E + L + L+ L
Sbjct: 15 KELGLSVRKVASMAGISHTHLGNLIRGISSWKEVQFSTLERLAYALD---IPVNDLVYLV 71
Query: 77 FSDGRTTEKKEKEIPLLYFPP-----SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
+ + +E+ P+ + + +G D P + ++ + +Y
Sbjct: 72 RGKVPSLDHRERVTPVRFLIQPVRGLASAGQPVDPEGVPV--------LADVWRRGSLLY 123
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIV-AKVLISRR 189
++ SM P GD + ++ + ++ G R+ I GD K +
Sbjct: 124 RVE---------GDSMAPTLHDGDRVYVDPSETELREG-RIYICEIPGDGHTIKRVRRLD 173
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ L+S N Y S++ + R+
Sbjct: 174 DGQLWLVSDNPAY--RPWRPSEMRIVGRV 200
>gi|328725290|ref|XP_003248415.1| PREDICTED: protein umuD-like [Acyrthosiphon pisum]
Length = 140
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + ++ + K SM GD+LI++SA++
Sbjct: 23 PCGFPS-PAQDYVE--QRIDLNDLCVTHPSATYFIKVSGDSMIEGGISDGDMLIVDSAVE 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD +++ G+ K L+ + + L +N + + +
Sbjct: 80 PEQGD-VVVAAIAGEFTVKQLMLKPC--LHLKPMNAAHAIIPIP 120
>gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family S24
[Magnetococcus sp. MC-1]
gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24
[Magnetococcus sp. MC-1]
Length = 220
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSIDL 195
K Q SM + +GDI++++ ++ +++ D+ K L GR L
Sbjct: 132 SFALKVQGDSMSTEFSEGDIIVVDPEMEPKNNHYVVVFLPMENDVTFKQLAVDGGRRY-L 190
Query: 196 MSLNCCYP 203
+N YP
Sbjct: 191 KPVNPRYP 198
>gi|224825376|ref|ZP_03698481.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002]
gi|224602297|gb|EEG08475.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002]
Length = 192
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SM+ GD+L+++ +++ G ++++ G++ K L +
Sbjct: 100 PASSFLVTVKGDSMINAGIHDGDMLVVDKSLEARHG-KVVVAVINGELTVKRL-EKTATG 157
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V
Sbjct: 158 LRLLPENPDFAPIEVPEEA 176
>gi|228909524|ref|ZP_04073348.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 200]
gi|228850115|gb|EEM94945.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 200]
Length = 223
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ F + + +P
Sbjct: 69 LATQEDNTVKEEVSIYETIQKDQSNIIHIPIIGSVAAGTPIFAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219
>gi|229151903|ref|ZP_04280100.1| Phage transcriptional repressor [Bacillus cereus m1550]
gi|229191824|ref|ZP_04318797.1| Phage transcriptional repressor [Bacillus cereus ATCC 10876]
gi|228591648|gb|EEK49494.1| Phage transcriptional repressor [Bacillus cereus ATCC 10876]
gi|228631559|gb|EEK88191.1| Phage transcriptional repressor [Bacillus cereus m1550]
Length = 223
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ F + + +P
Sbjct: 69 LATQEDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219
>gi|329122774|ref|ZP_08251346.1| transcriptional regulatory protein [Haemophilus aegyptius ATCC
11116]
gi|327472038|gb|EGF17476.1| transcriptional regulatory protein [Haemophilus aegyptius ATCC
11116]
Length = 234
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 40/188 (21%)
Query: 51 RW------PSTESIFKILAATNETICQLL-DLPFSDGRTTEKKEKEIPLLYFPP------ 97
RW PS ++ KI A ++ L + DG + K+ E+ L+
Sbjct: 43 RWVKGEADPSRTNLIKITEAGGVSLDWLALGVGNMDGVEPQAKKSEVNLIASNDETFSVI 102
Query: 98 ---------SGSGGFFDSGVFP-----TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
+G GGF D P W + +++ ++
Sbjct: 103 EDCREVRISAGGGGFNDEY-KPYQTTKVEKAW--LDSRRLKAEDCAMF---------LVS 150
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + G+ +I++ + + ++ + G ++ K + I L+S N Y
Sbjct: 151 GDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVKKVQ-ITYNGITLISQNTEYA 209
Query: 204 VDTVEMSD 211
+
Sbjct: 210 PIELNAEQ 217
>gi|46201984|ref|ZP_00054008.2| COG2932: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 230
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
T P+ + A + SM PL GD ++++++ +V + +
Sbjct: 120 TWLFPDAVVRYE-FRAQPSDLRMITITGDSMEPLLSSGDRILIDTSQKVPVPPGIFVIWD 178
Query: 177 TGDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
+V K + ++ + S+N Y +I I R++WA
Sbjct: 179 GMGLVTKRIEHIPHSDPPTVVIRSINPEYQTYERTADEINIIGRVIWA 226
>gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12]
gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12]
gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12]
Length = 198
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 22/166 (13%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
E + +IL A N + + L ++ +IP++ +G+G + +
Sbjct: 46 EKLAEILEALNSSFNEFFSLKE-----LCTEDIKIPIVSKVSAGTGLLVEENIV------ 94
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ + +P+ S D + SM P + GDI ++ ++ G+ ++I
Sbjct: 95 DYLPIPKELSNKC--------DFATFVEGNSMFPDVKNGDIALVKMDCEIESGN-IVIFS 145
Query: 176 RTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
G+ K I +S N Y +V E +++ I R++
Sbjct: 146 LNGNSYIKKYHYNPFSNKITFISSNKEYENISVMEGDELKVIGRVI 191
>gi|227111912|ref|ZP_03825568.1| DNA polymerase V subunit UmuD [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 139
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + + SM GD+++++SA+Q
Sbjct: 23 PAGFPSPAN-DYVE--QRIDLNTLCVRHPSATYFVRVSGQSMVEGGIHDGDLVVVDSALQ 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
GD ++I G+ K L R+ L+ +N Y
Sbjct: 80 ARHGD-IIIAALDGEFTIKQLQLTPTRA--LVPMNAAYAP 116
>gi|193066523|ref|ZP_03047566.1| CI protein [Escherichia coli E22]
gi|192925845|gb|EDV80496.1| CI protein [Escherichia coli E22]
Length = 217
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 120 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVELGDFCIARLGGDEFTFKKLIRDS 179
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 180 GQVF-LQPLNPQYP 192
>gi|325961650|ref|YP_004239556.1| SOS response UmuD protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323467737|gb|ADX71422.1| SOS response UmuD protein [Arthrobacter phenanthrenivorans Sphe3]
Length = 128
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + + T + SM GD LI+N A++
Sbjct: 12 AAGFPSPA---QDYFDGRIDLNAHLIKDITSTFVVRVTGDSMEGAGISDGDELIVNRALE 68
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G ++I G++ K L + L + N YP V
Sbjct: 69 PKDGS-VVIAVLDGELTVKRL-RLTAAGVVLQAENPKYPDIRVPA 111
>gi|289165190|ref|YP_003455328.1| phage repressor [Legionella longbeachae NSW150]
gi|288858363|emb|CBJ12231.1| phage repressor [Legionella longbeachae NSW150]
Length = 223
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 7/165 (4%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE-KEIPLLYFPPSGSGGFFDSGVF 109
R P E I ++ A + + L+ L ++ IPLL F + F +
Sbjct: 45 RTPGPEEIKQLAQALDVSPAYLMCLTDEKQPKKKQGLNALIPLLNFQQACEAKLF---IQ 101
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
N N V I ++ K D SM P R DILI+N +++ G+
Sbjct: 102 RLKNNQNEQEVRYIPVTAEFNAKLEEYSFALKMNDESMHPELRLNDILIINPIAKLHPGN 161
Query: 170 RLLIKPRTGDIV--AKVLI-SRRGRSIDLMSLNCCYPVDTVEMSD 211
+ ++ I+ K L S+ S +L + N + ++ +
Sbjct: 162 LVAVQLEDQVIIRRYKQLTFSKNNNSFELKAENDHWGNIIIDKTS 206
>gi|253730853|ref|ZP_04865018.1| possible heat-sensitive lambda citS857 repressor protein/VP16
fusion protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253725410|gb|EES94139.1| possible heat-sensitive lambda citS857 repressor protein/VP16
fusion protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 150
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 53 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 112
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 113 GQVF-LQPLNPQYP 125
>gi|187925688|ref|YP_001897330.1| LexA repressor [Burkholderia phytofirmans PsJN]
gi|187716882|gb|ACD18106.1| LexA repressor [Burkholderia phytofirmans PsJN]
Length = 199
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
ST SIF ++ + L+ T + P+L +G P G
Sbjct: 42 STSSIFALIK--RLSEAGFLERVEGRIAPTRRFFGR-PVLGAVRAGQPQ-------PEGQ 91
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
PE+ + + + + + + SM + GD++++ GD ++
Sbjct: 92 -----EPPELLTIDDYLVDDPNRTVLCRVRGESMRDVGLLDGDLVVVEKNRPTRPGD-IV 145
Query: 173 IKPRTGDIVAKVLI 186
+ G++ K L
Sbjct: 146 VAVVDGEMTVKTLR 159
>gi|323967257|gb|EGB62681.1| peptidase S24 [Escherichia coli M863]
Length = 217
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 137 DTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P + G +++++ V GD + + + K LI G
Sbjct: 121 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG 180
Query: 191 RSIDLMSLNCCYP 203
+ L LN YP
Sbjct: 181 QVF-LQPLNPQYP 192
>gi|331669090|ref|ZP_08369938.1| repressor protein CI [Escherichia coli TA271]
gi|331064284|gb|EGI36195.1| repressor protein CI [Escherichia coli TA271]
Length = 244
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 137 DTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P + G +++++ V GD + + + K LI G
Sbjct: 148 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG 207
Query: 191 RSIDLMSLNCCYP 203
+ L LN YP
Sbjct: 208 QVF-LQPLNPQYP 219
>gi|281599669|gb|ADA72653.1| CI protein [Shigella flexneri 2002017]
Length = 231
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 137 DTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P + G +++++ V GD + + + K LI G
Sbjct: 135 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG 194
Query: 191 RSIDLMSLNCCYP 203
+ L LN YP
Sbjct: 195 QVF-LQPLNPQYP 206
>gi|260868710|ref|YP_003235112.1| putative phage repressor protein CI [Escherichia coli O111:H- str.
11128]
gi|257765066|dbj|BAI36561.1| putative phage repressor protein CI [Escherichia coli O111:H- str.
11128]
Length = 207
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 137 DTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P + G +++++ V GD + + + K LI G
Sbjct: 111 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG 170
Query: 191 RSIDLMSLNCCYP 203
+ L LN YP
Sbjct: 171 QVF-LQPLNPQYP 182
>gi|226940913|ref|YP_002795987.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
gi|226715840|gb|ACO74978.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
Length = 262
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + D++++N A D L + GD+V K L + G I ++S N
Sbjct: 174 LSVKGDSMEGVLNDRDVILINHADNAPK-DGLYVLRIDGDLVVKRLQRKPGGKIGIISAN 232
Query: 200 CCYPVDTVEMSDI----EWIARILW 220
Y ++++D+ + R++W
Sbjct: 233 EAYAPYDIDLNDLPNDFAIVGRVVW 257
>gi|95930066|ref|ZP_01312805.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684]
gi|95133760|gb|EAT15420.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684]
Length = 230
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM P + G +++++ D + + ++ + L + + + N
Sbjct: 143 RVTGDSMAPTFAAGSLVLVDMNQPDLSADAIFALRQDEKVIVRRLQKMVNGDVHVKTDNP 202
Query: 201 CYPVDTVEMSD---IEWIARILWA 221
Y V ++ + R++WA
Sbjct: 203 RYEDQIVRSESLPILDIVGRVVWA 226
>gi|2688954|gb|AAC82517.1| MucA [IncL/M plasmid R446b]
Length = 144
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 103 FFDS---GVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157
FF FP+ + + + H+ + SM GD+L
Sbjct: 19 FFAEPVAAGFPSPAAGYEANEL----NLHDYCVRRPAATYFLRVSGDSMRDARIHDGDVL 74
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+++ A + G ++I + K L R LM LN +P + +
Sbjct: 75 VVDRAEEPRHGS-IVIASIDNEFTVKQLQLRPYPC--LMPLNPAFPPIRFDPEAL 126
>gi|315499847|ref|YP_004088650.1| transcriptional repressor, lexa family [Asticcacaulis excentricus
CB 48]
gi|315417859|gb|ADU14499.1| transcriptional repressor, LexA family [Asticcacaulis excentricus
CB 48]
Length = 235
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
P + + +E+PLL +G + G + + + VPEI Y +
Sbjct: 96 AAPVPASKPANDEGRELPLLGKIAAGV------PIEALGAERDRIRVPEIFVGSGEHYLL 149
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GD +I+ + G +++ GD + ++G S
Sbjct: 150 E-------IEGDSMINAGILDGDYVIIKKSDSAQSG-EIVVALVDGDTATLKRLRKKGAS 201
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
I L + N Y ++
Sbjct: 202 IALEAANPAYKTRIYNADEVA 222
>gi|148261865|ref|YP_001235992.1| LexA repressor [Acidiphilium cryptum JF-5]
gi|326405370|ref|YP_004285452.1| LexA repressor [Acidiphilium multivorum AIU301]
gi|166224548|sp|A5G2J1|LEXA_ACICJ RecName: Full=LexA repressor
gi|146403546|gb|ABQ32073.1| SOS-response transcriptional repressor, LexA [Acidiphilium cryptum
JF-5]
gi|325052232|dbj|BAJ82570.1| LexA repressor [Acidiphilium multivorum AIU301]
Length = 231
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 15/151 (9%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+PL +G + + +P
Sbjct: 89 GDFTARLQGARAADPAAAITLPLYGRIAAGQ------PIEALREHQAEIEIPASLVGPGE 142
Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
YA++ SM+ GD I+ G ++ ++ K L R
Sbjct: 143 HYALE-------VAGDSMVDAGILDGDTAIIRRGETAETGQIVVALIDDVEVTLKRLRRR 195
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G S L N Y + ++ R++
Sbjct: 196 -GNSTALEPANPRYEIRIFPAERVKVQGRLV 225
>gi|229844288|ref|ZP_04464428.1| putative phage repressor [Haemophilus influenzae 6P18H1]
gi|229812537|gb|EEP48226.1| putative phage repressor [Haemophilus influenzae 6P18H1]
Length = 234
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 40/188 (21%)
Query: 51 RW------PSTESIFKILAATNETICQLL-DLPFSDGRTTEKKEKEIPLLYFPP------ 97
RW PS ++ KI A ++ L + DG + K+ E+ L+
Sbjct: 43 RWVKGEADPSRTNLIKITEAGGVSLDWLALGVGNMDGVEPQAKKSEVNLIASNDETFSVI 102
Query: 98 ---------SGSGGFFDSGVFP-----TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
+G GGF D P W + +++ ++
Sbjct: 103 EDCREVRISAGGGGFNDEY-KPYQTTKVEKAW--LDSRRLKAEDCAMF---------LVS 150
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + G+ +I++ + + ++ + G ++ K + I L+S N Y
Sbjct: 151 GDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVKKVQ-ITYNGITLISQNTEYT 209
Query: 204 VDTVEMSD 211
++
Sbjct: 210 PIELDAEQ 217
>gi|134295441|ref|YP_001119176.1| putative phage repressor [Burkholderia vietnamiensis G4]
gi|134138598|gb|ABO54341.1| putative phage repressor [Burkholderia vietnamiensis G4]
Length = 254
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 33/197 (16%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT- 111
P E I + A + + + T+ +P + + D+ P
Sbjct: 59 PPFEVIANLARAAGAGLD-WVAFGDTVPPTSGGNASTLP---GAAAQAVEVRDTLGNPVD 114
Query: 112 ----------------GNKW---NTVGVPEIRSP----HNGIYAIQTQDTRHKTQDTSML 148
G+ + + N ++A T + + S+
Sbjct: 115 VSEFVFIPRYNVKAAAGHGQAVTDEAPKHTMAFRRYWIENYLHACPTDLSVLSVKGDSLQ 174
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV- 207
+ D+++++ + +++ GD++ K L G + + S N Y V
Sbjct: 175 GILNDRDVILIDRSQTTGSAGLYVLRI-DGDVIVKTLQRLPGGILKVSSANTAYEPFEVN 233
Query: 208 ---EMSDIEWIARILWA 221
SD E I R++WA
Sbjct: 234 MAQPPSDFEIIGRVVWA 250
>gi|319763314|ref|YP_004127251.1| lexa repressor [Alicycliphilus denitrificans BC]
gi|330825509|ref|YP_004388812.1| SOS-response transcriptional repressor, LexA [Alicycliphilus
denitrificans K601]
gi|317117875|gb|ADV00364.1| LexA repressor [Alicycliphilus denitrificans BC]
gi|329310881|gb|AEB85296.1| SOS-response transcriptional repressor, LexA [Alicycliphilus
denitrificans K601]
Length = 224
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + + + G ++ + D+ K L R G +I+L+ N YPV VE +
Sbjct: 150 DGDLLAVQATREARSGQIIVARLGD-DVTVKRL-RRTGSAIELLPENPDYPVIRVEPGE 206
>gi|323177107|gb|EFZ62697.1| repressor protein CI [Escherichia coli 1180]
Length = 217
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 137 DTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P + G +++++ V GD + + + K LI G
Sbjct: 121 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG 180
Query: 191 RSIDLMSLNCCYP 203
+ L LN YP
Sbjct: 181 QVF-LQPLNPQYP 192
>gi|257874654|ref|ZP_05654307.1| lambda repressor [Enterococcus casseliflavus EC10]
gi|257808818|gb|EEV37640.1| lambda repressor [Enterococcus casseliflavus EC10]
Length = 149
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 52 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 111
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 112 GQVF-LQPLNPQYP 124
>gi|260557490|ref|ZP_05829705.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
gi|260409116|gb|EEX02419.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
Length = 225
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ + +P++ + +GS F + +P R YA+ K
Sbjct: 89 EGRRVPVISWVAAGS---FTPIETVLKDTEIEEYLPPNRRCGKNGYAL-------KVVGY 138
Query: 146 SMLPLYRKGDILILNSAIQ---VNCGDRLLI-KPRTGDIVAKVLI---SRRGRSIDLMSL 198
SM P + GD + +N IQ + D +++ + K LI + ++ L
Sbjct: 139 SMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVACAGDSEATFKKLIIEGEGTSKFLE--PL 196
Query: 199 NCCYPVDTVEMSD 211
N +P +++S+
Sbjct: 197 NPDWPDKIIKLSE 209
>gi|9955121|pdb|1F39|A Chain A, Crystal Structure Of The Lambda Repressor C-Terminal
Domain
gi|9955122|pdb|1F39|B Chain B, Crystal Structure Of The Lambda Repressor C-Terminal
Domain
Length = 101
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 135 TQDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 3 ASAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 62
Query: 189 RGRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 63 SGQVF-LQPLNPQYP 76
>gi|292488579|ref|YP_003531463.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
amylovora CFBP1430]
gi|292899749|ref|YP_003539118.1| protein UmuD [Erwinia amylovora ATCC 49946]
gi|291199597|emb|CBJ46714.1| protein UmuD [Erwinia amylovora ATCC 49946]
gi|291554010|emb|CBA21063.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
amylovora CFBP1430]
gi|312172726|emb|CBX80982.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
amylovora ATCC BAA-2158]
Length = 139
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + K SM GD+LI++ ++
Sbjct: 23 PCGFPS-PAQDYVE--DRIDLNKLAIKHPSATYFIKVSGDSMCEAGIGDGDLLIVDRSLN 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD +++ G+ K L R + L+ N Y + +
Sbjct: 80 AVHGD-IVVAAIAGEFTVKEL--RTHPFLQLVPHNPHYSPISFRNEE 123
>gi|238801225|gb|ACR56332.1| MucA [Enterobacter cloacae]
Length = 136
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 103 FFDS---GVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157
FF FP+ + + + H+ + SM GD+L
Sbjct: 19 FFAEPVAAGFPSPAAGYEANEL----NLHDYCVRRPAATYFLRVSGDSMRDARIHDGDVL 74
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+++ A + G ++I + K L R LM LN +P + +
Sbjct: 75 VVDRAEEPRHGS-IVIASIDNEFTVKQLQLRPYPC--LMPLNPAFPPIRFDPEAL 126
>gi|27261132|gb|AAN86071.1| heat-sensitive lambda citS857 repressor protein/VP16 fusion protein
[synthetic construct]
Length = 367
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 140 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 199
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 200 GQVF-LQPLNPQYP 212
>gi|89054365|ref|YP_509816.1| LexA repressor [Jannaschia sp. CCS1]
gi|122999507|sp|Q28R71|LEXA_JANSC RecName: Full=LexA repressor
gi|88863914|gb|ABD54791.1| SOS-response transcriptional repressor, LexA [Jannaschia sp. CCS1]
Length = 228
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE-IRSPHNGIYAIQ 134
P + +E+P++ +G + + V VPE + YA++
Sbjct: 91 PANAMAVRAAPAREVPVMGQIAAGV------PIEAISQVASHVAVPEQMLGAGGNHYALE 144
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM+ GDI+++ + GD ++ + K L + G I
Sbjct: 145 -------VKGDSMIDAGINDGDIVVIEEGNTADNGDIVVALVEDHEATLKRLRRK-GGMI 196
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L + N Y +
Sbjct: 197 ALEAANPAYETRVFRDDQV 215
>gi|27383436|ref|NP_774966.1| MucA [Citrobacter freundii]
gi|216967817|ref|YP_002333325.1| MucA [Klebsiella pneumoniae]
gi|27261289|gb|AAN87630.1| MucA [Citrobacter freundii]
gi|215397989|gb|ACJ65266.1| MucA [Klebsiella pneumoniae]
gi|323700911|gb|ADY00064.1| translesion synthesis protein A [Escherichia coli]
Length = 144
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 103 FFDS---GVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157
FF FP+ + + + H+ + SM GD+L
Sbjct: 19 FFAEPVAAGFPSPAAGYEANEL----NLHDYCVRRPAATYFLRVSGDSMRDARIHDGDVL 74
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+++ A + G ++I + K L R LM LN +P + +
Sbjct: 75 VVDRAEEPRHGS-IVIASIDNEFTVKQLQLRPYPC--LMPLNPAFPPIRFDPEAL 126
>gi|288575295|ref|ZP_05976691.2| putative phage repressor [Neisseria mucosa ATCC 25996]
gi|288568389|gb|EFC89949.1| putative phage repressor [Neisseria mucosa ATCC 25996]
Length = 239
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 25/166 (15%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
E K L + L++ IPLL + F+ W
Sbjct: 73 ELYAKALRCRPADL--LVEETQVSEPPLPLGFIRIPLLDAIQA-----FN---------W 116
Query: 116 NTVGVP----EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
+ + +I I T K D SM+P +++G+++I++ + GD +
Sbjct: 117 DKLKSHTGELDISDWLISSADISTDSFGFKIMDFSMMPEFKQGELVIIDPELTPEAGDIV 176
Query: 172 LIKPRTGDIVAKVLISRRGR-----SIDLMSLNCCYPVDTVEMSDI 212
L+ D++ + R +L LN + + + S++
Sbjct: 177 LVATVNRDVLLRKYKQRGISDDGSFIYELHPLNDDFEILSSTSSEL 222
>gi|119383726|ref|YP_914782.1| putative phage repressor [Paracoccus denitrificans PD1222]
gi|119373493|gb|ABL69086.1| putative phage repressor [Paracoccus denitrificans PD1222]
Length = 203
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDT-------RHKTQDTSMLPLYRKGDILI----- 158
G V + + + G+Y + D + SM PL GDI+
Sbjct: 72 VGAGNTVVELVDAYAKGGGLYHVAAPDDLPSSGIVAVEVAGDSMSPLIEPGDIVFFTRHF 131
Query: 159 --LNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
++ A G + + G + K + R + DL S+N +P E+
Sbjct: 132 VGIDPAA---IGHVSICQTDDGRALIKQIRRGREEGTFDLYSVNSAHPP--------EYG 180
Query: 216 ARILWA 221
R++WA
Sbjct: 181 VRLVWA 186
>gi|296136472|ref|YP_003643714.1| putative phage repressor [Thiomonas intermedia K12]
gi|295796594|gb|ADG31384.1| putative phage repressor [Thiomonas intermedia K12]
Length = 224
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 31/234 (13%)
Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
+ K++ AI+ + ++ LAR + P S + + GR + K
Sbjct: 1 MLTGKELGAAIEAARLKKGVSKVTLARAMEIKPPSV---QDWIHHGR--------VAK-- 47
Query: 63 AATNETICQLLDLPFS------------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
+ D+ +P + G +
Sbjct: 48 SRLGALFQYFSDVVGPEHWGVREEWGYNPSLRIVDGMVTLPQYDLKAAAGPGRYLEAQLR 107
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G + ++G+ A+ T SM P GDI++++ +++ D
Sbjct: 108 VGAVQVCQDIVARILRNSGV-AL-TSLALVTVAGDSMEPTINDGDIVVIDRSVETIDRDG 165
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWA 221
+ + + K + +S+ + S N Y + + + R++WA
Sbjct: 166 VYLFTFGDETFIKRIQRM-PKSLSVNSDNGLYKGWEISSEETSSLHVHGRVIWA 218
>gi|224438775|ref|ZP_03659638.1| Repressor protein CI from prophage [Helicobacter cinaedi CCUG
18818]
Length = 108
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 11 SAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 70
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 71 GQVF-LQPLNPQYP 83
>gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM
30120]
gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM
30120]
Length = 214
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 14/184 (7%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKILAATNETICQLLDLP 76
E L+ + LA+ G S R G E R S + I A + + L
Sbjct: 17 ESRGLSQAQLAKLCGYSAAS-----RIGNYELGERKISADDALVISEALGVSPAE---LM 68
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
F E PLL +G+ F K +P + + ++ +
Sbjct: 69 FGTQSDQVISNYEYPLLTKIQAGA---FTENSNSYTEKDAIAWIPTAKKASERAFWLEVE 125
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
P + +G +++++ VN GD + + + K LI G++ L
Sbjct: 126 GHSMTAAQGG-KPSFPEGMLILIDPKEPVNVGDFCIARLNGNEFTFKKLIRESGQTF-LE 183
Query: 197 SLNC 200
LN
Sbjct: 184 PLNP 187
>gi|168260980|ref|ZP_02682953.1| CI protein [Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|307311055|ref|ZP_07590699.1| transcriptional regulator, XRE family [Escherichia coli W]
gi|205349860|gb|EDZ36491.1| CI protein [Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|306908561|gb|EFN39058.1| transcriptional regulator, XRE family [Escherichia coli W]
gi|315061677|gb|ADT76004.1| putative CI repressor [Escherichia coli W]
gi|323377741|gb|ADX50009.1| phage repressor like transcriptional regulator, XRE family
[Escherichia coli KO11]
Length = 217
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 137 DTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P + G +++++ V GD + + + K LI G
Sbjct: 121 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG 180
Query: 191 RSIDLMSLNCCYP 203
+ L LN YP
Sbjct: 181 QVF-LQPLNPQYP 192
>gi|254486471|ref|ZP_05099676.1| LexA repressor [Roseobacter sp. GAI101]
gi|214043340|gb|EEB83978.1| LexA repressor [Roseobacter sp. GAI101]
Length = 239
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM+ GD++++ + GD ++ + K G SI
Sbjct: 149 GEHYALEVKGDSMIDAGINDGDVVVIRETSVADNGDIVVALVEDHEATLKTFKRH-GSSI 207
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + ++ R++
Sbjct: 208 ALEAANPAYETRVLPADKVKVQGRLV 233
>gi|75761233|ref|ZP_00741217.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218898797|ref|YP_002447208.1| LexA repressor [Bacillus cereus G9842]
gi|228902202|ref|ZP_04066364.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 4222]
gi|74491268|gb|EAO54500.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218540796|gb|ACK93190.1| LexA repressor [Bacillus cereus G9842]
gi|228857437|gb|EEN01935.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 4222]
Length = 239
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 29 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLEK 84
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ F + + +P
Sbjct: 85 LATQEDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENI--------EGYLP 136
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 137 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 192
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 193 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 235
>gi|283769265|ref|ZP_06342169.1| peptidase S24-like domain protein [Bulleidia extructa W1219]
gi|283104241|gb|EFC05620.1| peptidase S24-like domain protein [Bulleidia extructa W1219]
Length = 275
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 30/149 (20%)
Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG----VPEI 123
+I L +T +IP+L P G P + + VP
Sbjct: 135 SIDVFLK------NSTNNFIHQIPVLGVVPCGE---------PIEAIEDIIEWVDVVPSQ 179
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
H G+ A + SM P GDILI+ +VN G ++K D K
Sbjct: 180 TKDHFGLIA----------KGNSMSPYILDGDILIVKYTPEVNSGKIAIVKVNGDDATCK 229
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ I L+ N Y ++
Sbjct: 230 RLMINDAG-ITLIPNNPLYKTKIFTPQEV 257
>gi|302127790|emb|CBO78204.1| MucA protein [Salmonella enterica subsp. enterica serovar
Enteritidis]
Length = 144
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 106 SGVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAI 163
+ FP+ + + + H+ + SM GD+L+++ A
Sbjct: 25 AAGFPSPAAGYEANEL----NLHDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAE 80
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ G ++I + K L R LM LN +P + +
Sbjct: 81 EPRHGS-IVIASIDNEFTVKQLQLRPYPC--LMPLNPAFPPIRFDPEAL 126
>gi|212219013|ref|YP_002305800.1| repressor protein C2 [Coxiella burnetii CbuK_Q154]
gi|212013275|gb|ACJ20655.1| repressor protein C2 [Coxiella burnetii CbuK_Q154]
Length = 238
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 115 WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
W +P ++ +Y + Q +M PL+ G +I+ + D
Sbjct: 120 WPE-ALPHYQTSDEVMYISTDANVSKLAYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRD 178
Query: 170 RLLIKPRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEM 209
++++ G+ A+ ++ R L SLN V +
Sbjct: 179 FVVVRL-QGEPEARLRQIITEGNDRY--LKSLNPELEKLEVAL 218
>gi|209363835|ref|YP_001423989.2| repressor protein C2 [Coxiella burnetii Dugway 5J108-111]
gi|207081768|gb|ABS77587.2| repressor protein C2 [Coxiella burnetii Dugway 5J108-111]
Length = 238
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 115 WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
W +P ++ +Y + Q +M PL+ G +I+ + D
Sbjct: 120 WPE-ALPHYQTSDEVMYISTDANVSKLAYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRD 178
Query: 170 RLLIKPRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEM 209
++++ G+ A+ ++ R L SLN V
Sbjct: 179 FVVVRL-QGEPEARLRQIITEGNDRY--LKSLNPELEKLEVAR 218
>gi|163746569|ref|ZP_02153927.1| LexA repressor [Oceanibulbus indolifex HEL-45]
gi|161380454|gb|EDQ04865.1| LexA repressor [Oceanibulbus indolifex HEL-45]
Length = 231
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
G+ A Q + + + SM GDI+++ + GD ++ + K
Sbjct: 133 PGGMIAGQGEHYALEVRGDSMIEAGINDGDIVVIRETSVADNGDIVVALVEDQEATLKRF 192
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ S+ L + N Y + ++ R++
Sbjct: 193 RRQGA-SVALEAANAAYETRVLPSDKVKVQGRLV 225
>gi|254224901|ref|ZP_04918516.1| transciptional regulator [Vibrio cholerae V51]
gi|125622589|gb|EAZ50908.1| transciptional regulator [Vibrio cholerae V51]
Length = 264
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 68/227 (29%), Gaps = 44/227 (19%)
Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--------NETICQLLDLPFS 78
+A+K G+ P + SK E R E I L + E+ ++ + P +
Sbjct: 48 IAKKIGVTPKAV--SKWLNAESMPRQNKMEEIANFLGVSLFWLQYGKQESFSEVKEKPNA 105
Query: 79 ----------DGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPH 127
E +P L +G GF + G + +
Sbjct: 106 YMLGEMQEWDSSTPLGDDEVMVPFLSDVRLSAGNGFLNEEELDNGF---KLRFAKSTLRR 162
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL------IKPRTGDIV 181
G+ A SM P+ G + +N DR L G++
Sbjct: 163 YGVCA--KDAVCVSVSGNSMEPVLPDGSTV------GINRADRTLSDGKIYAINHNGELF 214
Query: 182 AKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE-----WIARILWAS 222
K L G + + S N YP + + I R+ W S
Sbjct: 215 IKRLYKLPGGGVRIYSFNEIEYPPREYTEAQVVEQKISIIGRVFWYS 261
>gi|296535264|ref|ZP_06897472.1| repressor lexA [Roseomonas cervicalis ATCC 49957]
gi|296264404|gb|EFH10821.1| repressor lexA [Roseomonas cervicalis ATCC 49957]
Length = 245
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 12/118 (10%)
Query: 106 SGVFPTGNKWNT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P + V VP YA++ SM+ + GD +I+
Sbjct: 130 AAGLPIEALRDQGASVEVPMALLGQGDHYALE-------VAGDSMIGMGILDGDTVIIRR 182
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G ++ ++ K L + G SI L + N Y ++ R++
Sbjct: 183 GDTAENGSVVVALVDENEVTLKRLRRK-GNSIALEAANPQYETRIFGPDRVKVQGRLV 239
>gi|145632024|ref|ZP_01787771.1| putative phage repressor [Haemophilus influenzae R3021]
gi|144982313|gb|EDJ89907.1| putative phage repressor [Haemophilus influenzae R3021]
Length = 184
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 20/147 (13%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
+IPL+ + +G S G+ ++ V ++ +A+
Sbjct: 43 PASIGGNKIPLISYIQAGKWSGISSLKESCGD-FDYV-FTDL-DVSENAFAL-------S 92
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK-----VLISRRGRSIDLM 196
SM P +++ D++I++ +Q G+ ++ + K + +L+
Sbjct: 93 IIGDSMEPEFKEEDVIIIDPQVQPVAGEFVVAINGDYEATFKKYRPLEIDEYGRTQFELI 152
Query: 197 SLNCCYPVDTVEMSDIEWI-----ARI 218
LN YP + I I RI
Sbjct: 153 PLNSDYPKMSSLKQQISIIGTMVEHRI 179
>gi|38638093|ref|NP_943203.1| translesion synthesis protein [Erwinia amylovora]
gi|37681991|gb|AAQ97878.1| MucA [Erwinia amylovora]
Length = 144
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 106 SGVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAI 163
+ FP+ + + + H+ + SM GD+L+++ A
Sbjct: 25 AAGFPSPAAGYEANEL----NLHDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAE 80
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ G ++I + K L R LM LN +P + +
Sbjct: 81 EPRHGS-IVIASIDNEFTVKQLQLRPYPC--LMPLNPAFPPIRFDPEAL 126
>gi|212212220|ref|YP_002303156.1| repressor protein C2 [Coxiella burnetii CbuG_Q212]
gi|212010630|gb|ACJ18011.1| repressor protein C2 [Coxiella burnetii CbuG_Q212]
Length = 237
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 115 WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
W +P ++ +Y + Q +M PL+ G +I+ + D
Sbjct: 119 WPE-ALPHYQTSDEVMYISTDANVSKLAYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRD 177
Query: 170 RLLIKPRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEM 209
++++ G+ A+ ++ R L SLN V
Sbjct: 178 FVVVRL-QGEPEARLRQIITEGNDRY--LKSLNPELEKLEVAR 217
>gi|215919180|ref|NP_820400.2| S24 family peptidase [Coxiella burnetii RSA 493]
gi|206584064|gb|AAO90914.2| repressor protein C2 [Coxiella burnetii RSA 493]
Length = 238
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 115 WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
W +P ++ +Y + Q +M PL+ G +I+ + D
Sbjct: 120 WPE-ALPHYQTSDEVMYISTDANVSKLAYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRD 178
Query: 170 RLLIKPRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEM 209
++++ G+ A+ ++ R L SLN V
Sbjct: 179 FVVVRL-QGEPEARLRQIITEGNDRY--LKSLNPELEKLEVAR 218
>gi|291326325|ref|ZP_06124059.2| peptidase, S24 family [Providencia rettgeri DSM 1131]
gi|291314825|gb|EFE55278.1| peptidase, S24 family [Providencia rettgeri DSM 1131]
Length = 229
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 46/252 (18%), Positives = 84/252 (33%), Gaps = 74/252 (29%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTE-------S 57
H++I +A R+A++ +T + LA++ G + +W STE
Sbjct: 5 HERIKQA--RLAKK--MTQAELAQQLG-----------VTPQSVQQWETSTEPRKNRVMK 49
Query: 58 IFKILAAT------------NETICQLLDL---------PFSDGRTTEKKEKEIPLLYFP 96
I +IL+ P +D K I L
Sbjct: 50 IAEILSVDAEWLLFGTAKKDGVPAKDFKSREVDTWDSKTPLNDDEVEIPYYKSIELA--A 107
Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
+GS G D+ + + + GI A SM P+ G
Sbjct: 108 GNGSNGGSDNNGY-------KLRFSKSTLKRYGISA--KDVASFPVHGDSMEPVIPSGTT 158
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIV---------AKVLISRRGRSIDLMSLNC-CYPVDT 206
+ +N GD+ ++ G I K+L+ + G + + S N YP +T
Sbjct: 159 VFVN------MGDKTIV---DGGIYFIEQEDLLRVKILLRQPGGKLTIRSYNSIDYPDET 209
Query: 207 VEMSDIEWIARI 218
+++ + + R+
Sbjct: 210 IDIEKVRVVGRV 221
>gi|15887791|ref|NP_353472.1| putative phage repressor [Agrobacterium tumefaciens str. C58]
gi|15155365|gb|AAK86257.1| putative phage repressor [Agrobacterium tumefaciens str. C58]
Length = 231
Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+D ++ +L G G F +G V P + ++A+
Sbjct: 89 TDFGPAPTGPMDVEVLGVAVGGDDGDFTLNGEVSG----YVRRPPGIAHLRKVFAL---- 140
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIV----AKVLISRRGR 191
SM+P Y G+++ + V GD ++I+ P G V K L R
Sbjct: 141 ---HVLSDSMIPRYDPGELIYVGGREAV-AGDHVVIEMFPDEGATVGKAYVKKLKGRTKG 196
Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+I N + I+ + RI+
Sbjct: 197 AIVCEQYNPPKE-LQFDQYAIKNMWRII 223
>gi|307319507|ref|ZP_07598934.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|306894879|gb|EFN25638.1| putative phage repressor [Sinorhizobium meliloti AK83]
Length = 263
Score = 44.5 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP- 175
+P+ + + A + + SM P Y GD ++++ + DRL+
Sbjct: 152 EWFIPDAYLRNE-VRASPSHTLIMEVVGDSMFPTYSPGDRVLVDLSQ-----DRLVTDTV 205
Query: 176 ---RTG--DIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
G + K L + ++S N TVE+S ++ I RI
Sbjct: 206 YAISDGYSEPQIKRLQRVPFSEPTEVRIISDNPNLETFTVELSRVKIIGRI 256
>gi|256825655|ref|YP_003149615.1| Peptidase S24-like protein [Kytococcus sedentarius DSM 20547]
gi|256689048|gb|ACV06850.1| Peptidase S24-like protein [Kytococcus sedentarius DSM 20547]
Length = 115
Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG--RSID 194
+ SM P R GD++++ V G ++ + G + A+ L +R R ID
Sbjct: 7 RVAGRSMEPTLRPGDLVVVLHGAPVRPGRLVVCRLPDGPMGARPLGIKRAVCRRID 62
>gi|253991400|ref|YP_003042756.1| LexA repressor [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253782850|emb|CAQ86015.1| LexA repressor [Photorhabdus asymbiotica]
Length = 201
Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 65 TNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWN 116
T I L + ++ I ++ G + P
Sbjct: 27 TRAEIASHLGFRSPNAAEEHLKALARKGVIEIVAGASRGIRLLLEESGLPLIGRVAAGEP 86
Query: 117 TVGVPEIRSPHNGIYAI--QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
+ I S + A+ + D + SM + GD+L ++ V G ++++
Sbjct: 87 LLAQEHIESHYQVDPALFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVIV 145
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ K + G ++L++ N + +++ +
Sbjct: 146 ARIEDEVTVKRF-KQTGNKVELLAENPEFKPIVIDLRE 182
>gi|120610433|ref|YP_970111.1| putative prophage repressor [Acidovorax citrulli AAC00-1]
gi|120588897|gb|ABM32337.1| phage repressor protein [Acidovorax citrulli AAC00-1]
Length = 230
Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 19/210 (9%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
ER LT LA++A + + R R +I L + + L
Sbjct: 22 ERAGLTQPALAQRANVSQGTIGN---IESGLRKRPRDLLAIAAALHVSPLWLETGQGLMH 78
Query: 78 SD-------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
D + + P++ +G P G+ + P P+ +
Sbjct: 79 GDHDQANVSTAPASMRPRRYPVISSVQAGEWEEIVDQFSP-GDAEDWQDSPVDLGPNGFV 137
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRR 189
++ + P +G + ++ ++ GD ++ K K L+
Sbjct: 138 LKLEGSSMTNPAGGRDNFP---EGMYVHIHPGVEAQPGDYVVAKREADNKATFKKLVRVD 194
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G L ++N +P +++ + RI+
Sbjct: 195 GEQF-LHAINPAWPKPYIKLEPGD---RII 220
>gi|118578715|ref|YP_899965.1| putative phage repressor [Pelobacter propionicus DSM 2379]
gi|118501425|gb|ABK97907.1| putative phage repressor [Pelobacter propionicus DSM 2379]
Length = 235
Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLISRRGRSIDLMSL 198
Q SM P GD++++++ D + + GD ++ K L + S+ + S
Sbjct: 147 ISVQGDSMEPTLSNGDLILVDTRTS-RVEDGAIYVVQYGDALLVKRLQKKYDGSVVIRSD 205
Query: 199 NCCYPVDTVEMSD---IEWIARILWA 221
N Y + + D + + R++WA
Sbjct: 206 NPLYEAEIIHGEDALNLIIVGRVVWA 231
>gi|87120241|ref|ZP_01076136.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
[Marinomonas sp. MED121]
gi|86164344|gb|EAQ65614.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
[Marinomonas sp. MED121]
Length = 102
Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRS 192
++D + SM P GD L+++ + D + + G++ + + + +
Sbjct: 6 NSRDIAMYARGDSMEPTIYSGDSLVIDKTMSSVTSDGGIYVINYDGELFVQRVQKQFHGT 65
Query: 193 IDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
+++ S N Y + SD + I R++W+
Sbjct: 66 VEITSDNKNYGDIVIPSSDLNTLRIIGRVVWS 97
>gi|293446716|ref|ZP_06663138.1| repressor protein CI prophage [Escherichia coli B088]
gi|291323546|gb|EFE62974.1| repressor protein CI prophage [Escherichia coli B088]
gi|332344176|gb|AEE57510.1| phage repressor protein [Escherichia coli UMNK88]
Length = 237
Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 17/155 (10%)
Query: 58 IFKILAATNETICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
+ KIL N ++ + + + + E E P+ + G F +
Sbjct: 66 LAKIL---NVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQA---GMFSPEL 119
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
V + + + ++ + S P + G +++++ V+ G
Sbjct: 120 RTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPAGS-KPSFPDGMLILVDPEQPVDPG 178
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
D + + + K LI G+ L LN +P
Sbjct: 179 DFCIARLGGDEFTFKKLIKDSGQVF-LQPLNPQFP 212
>gi|152991709|ref|YP_001357430.1| phage repressor protein [Sulfurovum sp. NBC37-1]
gi|151423570|dbj|BAF71073.1| phage repressor protein [Sulfurovum sp. NBC37-1]
Length = 217
Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 34/86 (39%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
T+ SM P + G I+ ++ D + I T + K + R +
Sbjct: 126 NTELEAIHVDGESMEPTLQDGSIVFVDRNQTNINKDGIFIASTTAGLFIKRIRQRADGMV 185
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
+L+S N Y + + ++ + +++
Sbjct: 186 ELISDNKAYSPEVLAPDEVSIVGKVV 211
>gi|161789249|ref|YP_001595597.1| hypothetical protein BMSA_0010 [Vibrio sp. 23023]
gi|161761374|gb|ABX77020.1| H-T-H motif hypothetical protein [Vibrio sp. 23023]
Length = 207
Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 31/213 (14%)
Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
LT LA G+ + SK + + R E + +IL +
Sbjct: 13 EKGLTQQDLADAIGVSAVAV--SKWELGQSKPRKKFHEKLSEILGVNE-------KVISG 63
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP----HNGIYAIQ 134
+ T+ EIP + G+ + + + YA +
Sbjct: 64 SEKITKSDYVEIPYYNVKAA------------AGHGYENDELYDREVELVPIEALKYAQK 111
Query: 135 TQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ K SM+P++ G L I +S V GD ++ G + KVL + I
Sbjct: 112 SSVFCIKASGDSMVPVFFDGAKLAIDSSKTIVKDGDLYVV-SYDGCLRVKVLF-KTLNGI 169
Query: 194 DLMSLNCCYPVDTVEMSDIEW---IARILWASQ 223
L S N + + ++ I +++W SQ
Sbjct: 170 RLCSYNSMFKDEEYTHEELTTFRVIGKVIWYSQ 202
>gi|193076849|gb|ABO11574.2| merops peptidase family S24 [Acinetobacter baumannii ATCC 17978]
Length = 263
Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ + +P++ + +GS F + +P + YA+ K
Sbjct: 127 EGRRVPVISWVAAGS---FTPIETVLKDTEIEEYLPPNKRCGKNGYAL-------KVVGY 176
Query: 146 SMLPLYRKGDILILNSAIQ---VNCGDRLLI-KPRTGDIVAKVLI---SRRGRSIDLMSL 198
SM P + GD + +N IQ + D +++ + K LI + ++ L
Sbjct: 177 SMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVACAGDSEATFKRLIIEGEGTSKFLE--PL 234
Query: 199 NCCYPVDTVEMSD 211
N +P +++S+
Sbjct: 235 NPDWPDKIIKLSE 247
>gi|126641192|ref|YP_001084176.1| S24 family peptidase [Acinetobacter baumannii ATCC 17978]
Length = 225
Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ + +P++ + +GS F + +P + YA+ K
Sbjct: 89 EGRRVPVISWVAAGS---FTPIETVLKDTEIEEYLPPNKRCGKNGYAL-------KVVGY 138
Query: 146 SMLPLYRKGDILILNSAIQ---VNCGDRLLI-KPRTGDIVAKVLI---SRRGRSIDLMSL 198
SM P + GD + +N IQ + D +++ + K LI + ++ L
Sbjct: 139 SMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVACAGDSEATFKRLIIEGEGTSKFLE--PL 196
Query: 199 NCCYPVDTVEMSD 211
N +P +++S+
Sbjct: 197 NPDWPDKIIKLSE 209
>gi|33596638|ref|NP_884281.1| LexA repressor [Bordetella parapertussis 12822]
gi|33573339|emb|CAE37323.1| LexA repressor [Bordetella parapertussis]
Length = 242
Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 134 QTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
QT D K + SM R GD+L + A + G ++ + ++ K L +
Sbjct: 148 QTPDYLLKVRGMSM----RDAGILEGDLLAVKRAAEARNGQIVVARLGD-EVTVKRLQRQ 202
Query: 189 RGRSIDLMSLNCCYPVDTVEMSD 211
GR I+L+ N + V +D
Sbjct: 203 NGR-IELLPENPDFSPIVVANTD 224
>gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense
DSM 12261]
gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense
DSM 12261]
Length = 235
Score = 44.2 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 138 TRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDL 195
K + SM G + +N + GD +L+K R GD+ K R ++L
Sbjct: 130 YAIKVEGDSMQEAGIPDGARISVNPEEPIYNGDAVLVKWGRRGDLAVKWYYEYNDR-VEL 188
Query: 196 MSLNCC-YPVDTVEMSDIE 213
S N YP + +IE
Sbjct: 189 RSSNPAKYPPIIITKEEIE 207
>gi|133873978|gb|ABO40673.1| prophage repressor [Enterobacteria phage mEp332]
Length = 237
Score = 44.2 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 135 TQDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 139 GSAFWLEVEGNSMTAPTGYKPSFPDGMLILVDPEQTVEPGDFCIARLGGDEFTFKKLIRD 198
Query: 189 RGRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 199 SGQVF-LQPLNPQYP 212
>gi|12084966|ref|NP_073259.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|17233502|ref|NP_490545.1| SamA [Salmonella typhimurium LT2]
gi|60115500|ref|YP_209292.1| SamA protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161867914|ref|YP_001598095.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|167995153|ref|ZP_02576243.1| protein SamA [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|224504282|ref|YP_002635622.1| SamA [Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|261888739|ref|YP_003264428.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella
enterica subsp. enterica serovar Typhimurium]
gi|305696890|ref|YP_003864205.1| mutagenesis by UV and mutagens related to umuDC operon [Salmonella
enterica subsp. enterica serovar Typhimurium]
gi|134195|sp|P23831|SAMA_SALTY RecName: Full=Protein samA; Contains: RecName: Full=Protein samA'
gi|217088|dbj|BAA14225.1| UmuD [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|12060336|dbj|BAB20542.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|16445323|gb|AAL23541.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|45359324|gb|AAS58911.1| SamA protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161087293|gb|ABX56763.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|205327113|gb|EDZ13877.1| protein SamA [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|224470991|gb|ACN48820.1| SamA [Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|261857327|emb|CBA11400.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella
enterica subsp. enterica serovar Typhimurium]
gi|267990091|gb|ACY86488.1| SamA [Salmonella enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|304376192|dbj|BAJ15354.1| mutagenesis by UV and mutagens related to umuDC operon [Salmonella
enterica subsp. enterica serovar Typhimurium]
gi|312915775|dbj|BAJ39748.1| protein SamA [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|322713005|gb|EFZ04577.1| SamA protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323132995|gb|ADX20424.1| mutagenesis protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|326626282|gb|EGE32626.1| protein samA [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
gi|332991451|gb|AEF10433.1| mutagenesis by UV and mutagens [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 140
Score = 44.2 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 106 SGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--DTSMLPL-YRKGDILIL 159
FP+ + + Y I+ + SM + GD++++
Sbjct: 24 PAGFPSPAADYTEEELDL--------NAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVV 75
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+ A + GD ++I G+ K L + I L+ +N YP
Sbjct: 76 DKAEKPMQGD-IVIAETDGEFTVKRLQLKP--RIALLPINPAYP 116
>gi|209964501|ref|YP_002297416.1| LexA repressor [Rhodospirillum centenum SW]
gi|226694238|sp|B6IST2|LEXA_RHOCS RecName: Full=LexA repressor
gi|209957967|gb|ACI98603.1| LexA repressor [Rhodospirillum centenum SW]
Length = 237
Score = 44.2 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 21/154 (13%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSP 126
+ + +PL + P +T + VP
Sbjct: 95 GDFRGALPGREARGDAEAVSLPLYGRIAA---------GLPIEALRDTTASIDVPTGLIA 145
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
YA++ SM+ GD +I+ G ++ ++ K L
Sbjct: 146 SGEHYALE-------VAGDSMVDAGILDGDTVIIQRCETAENGTVIVALVDDNEVTLKRL 198
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ G SI L N Y + R++
Sbjct: 199 RRK-GNSIALEPANPAYETRVFGADRVRIQGRLV 231
>gi|239815617|ref|YP_002944527.1| LexA repressor [Variovorax paradoxus S110]
gi|259494481|sp|C5CKV7|LEXA_VARPS RecName: Full=LexA repressor
gi|239802194|gb|ACS19261.1| SOS-response transcriptional repressor, LexA [Variovorax paradoxus
S110]
Length = 227
Score = 44.2 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 137 DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
D K + SM GD+L + + + G ++ + ++ K L + I+L
Sbjct: 136 DYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVARLGD-EVTVKRLKR-NKQVIEL 193
Query: 196 MSLNCCYPVDTVEMSD 211
+ N YP V+ +
Sbjct: 194 HAENPDYPTIVVQPGE 209
>gi|319793947|ref|YP_004155587.1| transcriptional repressor, lexa family [Variovorax paradoxus EPS]
gi|315596410|gb|ADU37476.1| transcriptional repressor, LexA family [Variovorax paradoxus EPS]
Length = 227
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 137 DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
D K + SM GD+L + + + G ++ + ++ K L + I+L
Sbjct: 136 DYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVARLGD-EVTVKRLKR-NKQVIEL 193
Query: 196 MSLNCCYPVDTVEMSD 211
+ N YP V+ +
Sbjct: 194 HAENPDYPTIIVQPGE 209
>gi|260435498|ref|ZP_05789468.1| protein UmuD [Synechococcus sp. WH 8109]
gi|260413372|gb|EEX06668.1| protein UmuD [Synechococcus sp. WH 8109]
Length = 143
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 14/133 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
++ +PL + FP+ + V V + + T
Sbjct: 5 HRPLPLQPKRSRLTLPLAGERVA--------AGFPSPAD-DYVDV--GIDLNEQLIRHPT 53
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SM GD+L+++ ++ G ++++ G K L+ RGR +
Sbjct: 54 STFFLHVSGESMTDAGIHDGDLLVVDRSLDPRPG-QVVVAVLDGAFTLKRLMRHRGR-LR 111
Query: 195 LMSLNCCYPVDTV 207
L + + YP +
Sbjct: 112 LEAAHPDYPPLEL 124
>gi|167554278|ref|ZP_02348019.1| protein SamA [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205321486|gb|EDZ09325.1| protein SamA [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 140
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 17/104 (16%)
Query: 106 SGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--DTSMLPL-YRKGDILIL 159
FP+ + + + Y I+ + + SM + GD++++
Sbjct: 24 PAGFPSPAADYTEDELDL--------NAYCIRRPSATYFVRAIGDSMKDMGLHSGDLMVV 75
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+ A + GD ++I G+ K L + I L+ +N YP
Sbjct: 76 DKAEKPMQGD-IVIAETDGEFTVKRLQLKP--RIALLPMNPAYP 116
>gi|255264421|ref|ZP_05343763.1| LexA repressor [Thalassiobium sp. R2A62]
gi|255106756|gb|EET49430.1| LexA repressor [Thalassiobium sp. R2A62]
Length = 232
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 16/146 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE-IRSPHNGIYAIQ 134
P E+P++ +G + + ++V VP + + YA++
Sbjct: 95 PHDARPVETTHAIELPVMGKIAAGV------PIEAISHAAHSVAVPGGMVAGTCEHYALE 148
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM+ GD++++ + GD ++ + K R G SI
Sbjct: 149 -------VKGDSMIDAGINDGDVVVIKETSTADNGDIVVALVEDQEATLKRF-RRNGASI 200
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y ++ R++
Sbjct: 201 ALEAANPAYETRVFNDDQVKVQGRLV 226
>gi|218886195|ref|YP_002435516.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757149|gb|ACL08048.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 249
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 39/204 (19%)
Query: 50 NRWPS-------TESIFKILAATNE-----TICQLLDLPFSDGRTTEKKEKEIP------ 91
R+PS TE + +I A + + + + P+ + + E+P
Sbjct: 49 ERFPSRTNLARLTEHLDRIPAVSGLQPHRRGLHERMLRPYGEAPRASAGQPEVPEEVRRL 108
Query: 92 -----LLYFPPS---GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
L+ + GG +G P + R+ + +
Sbjct: 109 AEEFVLVDRAEARPSAGGGSLQTGGHPQEQHAFRLDWVLGRARSTTGLCL------MEVM 162
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM GD++++N DR+ + +I K N +
Sbjct: 163 GRSMERTLHDGDLVLVNQHDHALAEDRIYVVRVQDEIYIKRFSR-TPGRYHFRGDNPEFA 221
Query: 204 VDTVEM----SDIEW--IARILWA 221
+E+ ++W I R++WA
Sbjct: 222 YQDIEIDPRDEALQWEVIGRVIWA 245
>gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223]
gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223]
Length = 231
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV---AKVLISRRGRSIDLM 196
SM P + G +++++ V ++ + R GD++ A + ++
Sbjct: 146 ITVTGDSMEPALKDGSLIVVDPTQTVVRDGKIYV-FRQGDVLRVKAFSYEKQMVKA---K 201
Query: 197 SLNCCYPVDTVEMSDIEWIARILWAS 222
S N Y + + ++E + R++++S
Sbjct: 202 SYNEFYKDELYRLDELELLGRVVFSS 227
>gi|164686056|ref|ZP_01946368.2| peptidase S24-like domain protein [Coxiella burnetii 'MSU Goat
Q177']
gi|165924149|ref|ZP_02219981.1| peptidase S24-like domain protein [Coxiella burnetii RSA 334]
gi|164601612|gb|EAX33041.2| peptidase S24-like domain protein [Coxiella burnetii 'MSU Goat
Q177']
gi|165916408|gb|EDR35012.1| peptidase S24-like domain protein [Coxiella burnetii RSA 334]
Length = 216
Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 115 WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
W +P ++ +Y + Q +M PL+ G +I+ + D
Sbjct: 98 WPE-ALPHYQTSDEVMYISTDANVSKLAYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRD 156
Query: 170 RLLIKPRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEM 209
++++ G+ A+ ++ R L SLN V +
Sbjct: 157 FVVVRL-QGEPEARLRQIITEGNDRY--LKSLNPELEKLEVAL 196
>gi|167753569|ref|ZP_02425696.1| hypothetical protein ALIPUT_01846 [Alistipes putredinis DSM 17216]
gi|167658194|gb|EDS02324.1| hypothetical protein ALIPUT_01846 [Alistipes putredinis DSM 17216]
Length = 136
Score = 43.8 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISRRG 190
++ Q+ R Q SMLP +R G ++ L + G ++ + G+ V +I
Sbjct: 19 LEGQNVRICVQGQSMLPFFRSGSVITLRPLRHEDLRRGAVVMAETVQGNFVVHRIIQATP 78
Query: 191 RSIDLMS---LNCC--YPVDTVEMSDIEWIARIL 219
+ L+ L P + D I R+L
Sbjct: 79 EEVTLLGDGNLTTETMPPAKVYGVVDCSAIHRVL 112
>gi|163742788|ref|ZP_02150173.1| LexA repressor [Phaeobacter gallaeciensis 2.10]
gi|161384043|gb|EDQ08427.1| LexA repressor [Phaeobacter gallaeciensis 2.10]
Length = 224
Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + Q Q + + SM GDI+++ + GD ++ + K +
Sbjct: 128 SMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETAVADNGDVVVALVEGQEATLKRIYR 187
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ G +I L + N Y ++ R++
Sbjct: 188 K-GSTIALEAANPAYETRRYRQDQVKVQGRLV 218
>gi|294786785|ref|ZP_06752039.1| UmuD protein [Parascardovia denticolens F0305]
gi|294485618|gb|EFG33252.1| UmuD protein [Parascardovia denticolens F0305]
Length = 140
Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ S + SM GD+LI++ ++
Sbjct: 15 AGFPSVA---QDYFDGDFSFDENVIIHPDTTFIVTVAGDSMQGAGIFDGDLLIVDRSLPA 71
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEW 214
D ++I G++ K L+ + + L N YP + E + W
Sbjct: 72 QEND-VVIAAIDGELTVKRLVIDQEGNPVLHPENPSYPDIHLYWEADALIW 121
>gi|261406209|ref|YP_003242450.1| LexA family transcriptional repressor [Paenibacillus sp. Y412MC10]
gi|329930854|ref|ZP_08284253.1| repressor LexA [Paenibacillus sp. HGF5]
gi|261282672|gb|ACX64643.1| transcriptional repressor, LexA family [Paenibacillus sp. Y412MC10]
gi|328934556|gb|EGG31061.1| repressor LexA [Paenibacillus sp. HGF5]
Length = 208
Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 40/148 (27%), Gaps = 24/148 (16%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFD------------SGVFPTGNKW---NTVGVPEIRS 125
R K + I LL S S F + P + +P+
Sbjct: 57 RRDPTKPRAIELLGQEESESANLFTHTIARVPVVGKVTAGVPITAMENIEDYFPLPQHYV 116
Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
+ ++ + SM GD +I+ + GD ++ + K
Sbjct: 117 GDDKVFML-------SVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVAMTEEDEATVKT 169
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ + L N Y + I
Sbjct: 170 F-YKEKDHVRLQPENPTYEPLRLNHVTI 196
>gi|110680397|ref|YP_683404.1| LexA repressor [Roseobacter denitrificans OCh 114]
gi|123065396|sp|Q163X5|LEXA_ROSDO RecName: Full=LexA repressor
gi|109456513|gb|ABG32718.1| LexA repressor [Roseobacter denitrificans OCh 114]
Length = 233
Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 41/209 (19%)
Query: 42 KRFGIEGRNRWPSTESIFKILAA-TNETICQLLDLPFSDG--RTTEKKEKEIPLLYFPP- 97
KR +G PS + + + L + I +L+ G R + + I ++ P
Sbjct: 15 KRVQRDGVP--PSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHRARAIEIVKLPET 72
Query: 98 ---SGSGGFFD--------SGVFPTGN----KWNTVGVPEIRS-----------PHNGIY 131
+ GGF P G + V +P + ++
Sbjct: 73 LGGAARGGFTPRVIEGDKPDAPLPAGAQAVSSADAVALPLVGRIAAGLPIEAINQNSASV 132
Query: 132 AIQTQ-------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
A+ Q + + SM+ GD++++ + GD ++ + K
Sbjct: 133 AVPGQMLSGKGDHYALEVKGDSMIDAGINDGDVVVIRETSVADNGDIVVALIEDHEATLK 192
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ + G SI L + N Y +
Sbjct: 193 RYMRK-GSSIALEAANPAYETRVFTEDKV 220
>gi|308171850|ref|YP_003915180.1| UmuD-like protein [Arthrobacter arilaitensis Re117]
gi|307743222|emb|CBQ74045.1| UmuD-like protein [Arthrobacter arilaitensis Re117]
Length = 143
Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q + SM GD LI++ ++Q G ++I G++ K L +
Sbjct: 52 QVSTFIVRVSGESMQGAGISDGDELIVDRSVQPRDG-HVVIAVIDGEMTVKRLSTGPAGV 110
Query: 193 IDLMSLNCCYPVDTVE 208
+ L + N YP V
Sbjct: 111 V-LKAENPDYPDLRVA 125
>gi|87200194|ref|YP_497451.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
gi|87135875|gb|ABD26617.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
Length = 213
Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 27/224 (12%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
A+D + ++ + S ++R G + + R G R ++
Sbjct: 2 DDARRALDELIQQRGVNYSSVSRLLGRNAAYIQQYIRR---GSPR--------QLDEQDR 50
Query: 67 ETICQLLDLPFSDGRTTEKKEK------EIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVG 119
+ + + ++ +PLL +G G + ++
Sbjct: 51 SVLARFFGVDEKVLGAPARRSGPVVELVHVPLLNVEASAGHGALAEMEAKSAQFGFDEKW 110
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTG 178
+ + + +I SM P GD ++++ Q D + +
Sbjct: 111 LRRLTASKASSLSI------IAVHGDSMEPTLHDGDEVMVDLGDGQSRLRDGIYVLRMDD 164
Query: 179 DIVAKVLISRR-GRSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
+ K + G+ ++S N YP +E + + R+LW
Sbjct: 165 MLSVKRIALEPQGKRASVLSDNPAYPSWRGLEKRTLNIVGRVLW 208
>gi|315646590|ref|ZP_07899708.1| transcriptional repressor, LexA family protein [Paenibacillus
vortex V453]
gi|315278233|gb|EFU41553.1| transcriptional repressor, LexA family protein [Paenibacillus
vortex V453]
Length = 208
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 40/148 (27%), Gaps = 24/148 (16%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFD------------SGVFPTGNKW---NTVGVPEIRS 125
R K + I LL S S F + P + +P+
Sbjct: 57 RRDPTKPRAIELLGQEESDSANLFTHTIARVPVVGKVTAGVPITAMENIEDYFPLPQHYV 116
Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
+ ++ + SM GD +I+ + GD ++ + K
Sbjct: 117 GDDKVFML-------SVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVAMTEEDEATVKT 169
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ + L N Y + I
Sbjct: 170 F-YKEKDHVRLQPENPTYEPLRLNHVTI 196
>gi|331701909|ref|YP_004398868.1| phage repressor like XRE family transcriptional regulator
[Lactobacillus buchneri NRRL B-30929]
gi|329129252|gb|AEB73805.1| phage repressor like transcriptional regulator, XRE family
[Lactobacillus buchneri NRRL B-30929]
Length = 237
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 34/85 (40%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D SM PL +KG + ++ +V G+ ++ R + K ++
Sbjct: 152 GADELITVDGDSMEPLLKKGSQVFIHYQPEVENGEIAIVHIRDVGVTCKKFYVNEDNTVT 211
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
L S+N Y + ++ I +++
Sbjct: 212 LKSINEAYDDMVFDCDEVNVIGKVI 236
>gi|313682117|ref|YP_004059855.1| phage repressor [Sulfuricurvum kujiense DSM 16994]
gi|313154977|gb|ADR33655.1| putative phage repressor [Sulfuricurvum kujiense DSM 16994]
Length = 219
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 102 GFFDSGVFPTGNKWN--TVGVPEIRSPHNGIYAIQTQDT-----RHKTQDTSMLPLYRKG 154
+F S G + + + N + ++ + SM P +
Sbjct: 88 RYFSSVNASAGGGADNEELDYEPLMLEDNFVLSLGGEKELRHIEAINVSGDSMEPSFSYN 147
Query: 155 DILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
DI+ +N + ++ G I+ G + K + R +D++S N YP ++E
Sbjct: 148 DIIFINRSKTDISRGGIFTIRTEHG-LFIKRIQVRIDGKLDIISDNKDYPTYVARRDEVE 206
Query: 214 WIARIL 219
I R++
Sbjct: 207 VIGRVV 212
>gi|315226410|ref|ZP_07868198.1| SOS mutagenesis and repair protein UmuD [Parascardovia denticolens
DSM 10105]
gi|315120542|gb|EFT83674.1| SOS mutagenesis and repair protein UmuD [Parascardovia denticolens
DSM 10105]
Length = 137
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ S + SM GD+LI++ ++
Sbjct: 12 AGFPSVA---QDYFDGDFSFDENVIIHPDTTFIVTVAGDSMQGAGIFDGDLLIVDRSLPA 68
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEW 214
D ++I G++ K L+ + + L N YP + E + W
Sbjct: 69 QEND-VVIAAIDGELTVKRLVIDQEGNPVLHPENPSYPDIHLYWEADALIW 118
>gi|161831001|ref|YP_001597255.1| peptidase S24-like domain-containing protein [Coxiella burnetii RSA
331]
gi|81628752|sp|Q83BT6|Y1416_COXBU RecName: Full=Uncharacterized HTH-type transcriptional regulator
CBU_1416
gi|161762868|gb|ABX78510.1| peptidase S24-like domain protein [Coxiella burnetii RSA 331]
Length = 216
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 115 WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
W +P ++ +Y + Q +M PL+ G +I+ + D
Sbjct: 98 WPE-ALPHYQTSDEVMYISTDANVSKLAYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRD 156
Query: 170 RLLIKPRTGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEM 209
++++ G+ A+ ++ R L SLN V
Sbjct: 157 FVVVRL-QGEPEARLRQIITEGNDRY--LKSLNPELEKLEVAR 196
>gi|303328406|ref|ZP_07358843.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
gi|302861400|gb|EFL84337.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
Length = 211
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 140 HKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
SM PL R+GD ++++ ++ G ++ ++ K L L
Sbjct: 122 MCVAGDSMEPLIREGDTILVDESEKGKELRDGYIFVVGLND-ALMVKRLAKIPNGW-RLC 179
Query: 197 SLNCCYPVDTVEMSD---------IEWIARIL 219
S N P V+ D + W R++
Sbjct: 180 SENKERPDIDVQGDDFNTFRVYGRVRWFGRVV 211
>gi|170080892|ref|YP_001730212.1| repressor protein CI [Escherichia coli str. K-12 substr. DH10B]
gi|133351|sp|P14819|RPC1_BPPH8 RecName: Full=Repressor protein CI
gi|14804|emb|CAA31471.1| unnamed protein product [Enterobacteria phage phi80]
gi|169888727|gb|ACB02434.1| repressor protein CI [Escherichia coli str. K-12 substr. DH10B]
Length = 236
Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV-AKVLISRRGRSIDLMSLNCC 201
SM P+ G + +++ + D L GD+ K L + G I + S+N
Sbjct: 151 SGDSMEPVIPDGATVAVDTGNK-RVIDGELYAINQGDLKRIKQLYRKPGGKILIRSINRD 209
Query: 202 YPVDTVEMSDIEWIARILWAS 222
Y + + +D+E I + W S
Sbjct: 210 YDDEEADEADVEIIGFVFWYS 230
>gi|71559074|ref|YP_271801.1| SamA [Salmonella enterica]
gi|68166373|gb|AAY88134.1| SamA [Salmonella enterica]
Length = 140
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--DTSMLPL-YRKGDILILNSA 162
FP+ + Y I+ + SM + GD+++++ A
Sbjct: 24 PAGFPSPAA-DYTE----EKLDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKA 78
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+ GD ++I G+ K L + I L+ +N YP
Sbjct: 79 EKPMQGD-IVIAETDGEFTVKRLQLKP--RIALLPINPAYP 116
>gi|44888098|sp|Q7W0T5|LEXA_BORPA RecName: Full=LexA repressor
Length = 216
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 134 QTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
QT D K + SM R GD+L + A + G ++ + ++ K L +
Sbjct: 122 QTPDYLLKVRGMSM----RDAGILEGDLLAVKRAAEARNGQIVVARLGD-EVTVKRLQRQ 176
Query: 189 RGRSIDLMSLNCCYPVDTVEMSD 211
GR I+L+ N + V +D
Sbjct: 177 NGR-IELLPENPDFSPIVVANTD 198
>gi|114327480|ref|YP_744637.1| LexA repressor [Granulibacter bethesdensis CGDNIH1]
gi|122327547|sp|Q0BTY8|LEXA_GRABC RecName: Full=LexA repressor
gi|114315654|gb|ABI61714.1| lexA repressor [Granulibacter bethesdensis CGDNIH1]
Length = 242
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 20/171 (11%)
Query: 53 PSTESIFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVF 109
PS S A T N + ++PL +G D+ +
Sbjct: 82 PSAPSFASPPAFTPNVIQGSFSSRIAGVRAAQDASAVQLPLYGRIAAGMPIEALRDTSAY 141
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
+ VP + YA++ SM+ GD +I+ + G
Sbjct: 142 --------LSVPIDMLGNGEHYALE-------VAGDSMIDAGIFDGDTVIIQQSDLAENG 186
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
++ ++ K L R G+S+ L N + + R++
Sbjct: 187 QIVVALIDDTEVTLKRLRRR-GKSVALEPANERHETRIFPADRVRVQGRLI 236
>gi|312114155|ref|YP_004011751.1| LexA family transcriptional regulator [Rhodomicrobium vannielii
ATCC 17100]
gi|311219284|gb|ADP70652.1| transcriptional repressor, LexA family [Rhodomicrobium vannielii
ATCC 17100]
Length = 258
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
Y + + SM ++GD ++L GD ++ + K L +R
Sbjct: 164 YLSTGDHFALEVRGDSMIEAGIQEGDTVVLKKTAAAESGDIVVALIDDEEATLKRL-RKR 222
Query: 190 GRSIDLMSLNCCYPVDTVEMSDI 212
G+SI L N Y +
Sbjct: 223 GQSIALEPANPAYETRIFGPDRV 245
>gi|83942599|ref|ZP_00955060.1| LexA repressor [Sulfitobacter sp. EE-36]
gi|83953840|ref|ZP_00962561.1| LexA repressor [Sulfitobacter sp. NAS-14.1]
gi|83841785|gb|EAP80954.1| LexA repressor [Sulfitobacter sp. NAS-14.1]
gi|83846692|gb|EAP84568.1| LexA repressor [Sulfitobacter sp. EE-36]
Length = 232
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + Q SM+ GD++I+ + GD ++ + K R G S+
Sbjct: 142 GEHYALEVQGDSMIDAGINDGDVVIIRETSVADDGDIVVALVEDHEATLKKF-RRHGSSV 200
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + ++ R++
Sbjct: 201 ALEAANPAYETRVLPSDKVKVQGRLV 226
>gi|170683779|ref|YP_001744018.1| DNA polymerase V subunit UmuD [Escherichia coli SMS-3-5]
gi|218700236|ref|YP_002407865.1| DNA polymerase V subunit UmuD [Escherichia coli IAI39]
gi|300939591|ref|ZP_07154248.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|170521497|gb|ACB19675.1| protein UmuD [Escherichia coli SMS-3-5]
gi|218370222|emb|CAR18018.1| DNA polymerase V, subunit D [Escherichia coli IAI39]
gi|300455595|gb|EFK19088.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
Length = 139
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + + + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYIE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|229551634|ref|ZP_04440359.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus rhamnosus LMS2-1]
gi|229314952|gb|EEN80925.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus rhamnosus LMS2-1]
Length = 260
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
+G G F D P +TV +P+ P + Y K SM P Y
Sbjct: 132 GIVAAGYGAFNDDRYEPM----DTVKIPDSAIPSHYDYC-------FKVVGDSMSPYYED 180
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
G+ + + V G ++ + K+++ + + L SLN
Sbjct: 181 GEFVFVQKTQDVTNGMIAVVDIDDMTFIKKLILEQ--DRLCLRSLNDD 226
>gi|149915248|ref|ZP_01903776.1| putative transcriptional regulator, repressor [Roseobacter sp.
AzwK-3b]
gi|149810969|gb|EDM70808.1| putative transcriptional regulator, repressor [Roseobacter sp.
AzwK-3b]
Length = 220
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 16/211 (7%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
ER N++ + +ARKAG+ + KR G+ + S E KI A + +L
Sbjct: 15 ERQNVSVAEIARKAGVPYDAVRDIKR----GKVQSTSWERAVKIAQALGIVLEDVLPATS 70
Query: 78 S----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+ + + + S G P G+ + P A
Sbjct: 71 KTEQVREAASSDLQAMVSVYDVHASAGDGAVVIHEEPIGS----LAFPA-NYLRQLTQAN 125
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLISR-RGR 191
+ SMLP D+++L+ + + D L + G+ ++ K +
Sbjct: 126 WRDLAIISVKGDSMLPTLADDDVVMLDRSKRDLSYDGLFVIRDNGEALLVKRIQRAPTPG 185
Query: 192 SIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221
+ ++S N Y ++SD+E I R++WA
Sbjct: 186 HVIIISDNRALYDPVEKKLSDMEVIGRVIWA 216
>gi|323516288|gb|ADX90669.1| S24 family peptidase [Acinetobacter baumannii TCDC-AB0715]
Length = 229
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVA--KVLISRRG 190
TSMLP + GD + +N V D +++ GD A K LI G
Sbjct: 135 NGYGLIVTGTSMLPKFEPGDRIYVNPDYPVFDLKTNDLVIV-SCAGDTQATFKRLIIEDG 193
Query: 191 RSIDLMSLNCCYPVDTVEMSD-------IEWIAR 217
L LN +P +++++ + + R
Sbjct: 194 EEKYLEPLNTKWPEQIIKLTEECKLVGKVVGMHR 227
>gi|315929874|gb|EFV09035.1| Signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
305]
Length = 224
Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSID 194
K SM P GD++ ++ + V GD ++I G+I K L+ + I
Sbjct: 122 IKVIGDSMEPFIHSGDVIAIDVSKNKLDLVKNGDIVVINL-DGEIYCKKLLKQPFVNEIV 180
Query: 195 LMSLNCCYPVDTVEMSDI 212
L S+N Y V + I
Sbjct: 181 LSSMNSFYKDIVVNIEHI 198
>gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 202
Score = 43.8 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 3/106 (2%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
P + + + + K + SM P Y +GD +IL
Sbjct: 84 PAGIPIEAIED---ISDTEDISFKDFDKNKTYIGLKVEGDSMYPKYLQGDTIILELTPDC 140
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G + + K +I +I LM +N YP T D
Sbjct: 141 ESGTDAAVYVNGYEATLKTVIKNDNGTITLMPINTSYPPKTYGKDD 186
>gi|317969758|ref|ZP_07971148.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CB0205]
Length = 148
Score = 43.8 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G E+ + +PL + FP+ + + V + + +
Sbjct: 9 GGLRDERPRRPLPLASSTVA--------AGFPSPAD-DYIDV--GIDLNETLIRHPSSTF 57
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ SM + GD+L+++ +++ G +++ G K L +GR + L +
Sbjct: 58 FLRVSGDSMVEAGIQHGDLLVVDRSLEARPG-HVVVAVLDGAFTLKRLARHQGR-LRLEA 115
Query: 198 LNCCYPVDTVEM 209
N YP +
Sbjct: 116 ANSAYPPLELHH 127
>gi|283138937|gb|ADB12540.1| hypothetical protein [uncultured bacterium 9F08]
Length = 125
Score = 43.8 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
Y + SM P + +GD++++ G ++
Sbjct: 17 EEFDYQPTGCEDKEPYVL-------MVLGDSMEPEFNEGDVIVIEPGANYRDGSYIIAYH 69
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCY 202
+ + + L + L LN Y
Sbjct: 70 ND-EYIFRQL-RVINDNFYLTPLNPNY 94
>gi|149914774|ref|ZP_01903304.1| LexA repressor [Roseobacter sp. AzwK-3b]
gi|149811567|gb|EDM71402.1| LexA repressor [Roseobacter sp. AzwK-3b]
Length = 233
Score = 43.8 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
YA++ + SM GD++I+ + GD ++ + K R
Sbjct: 146 YALE-------VRGDSMIEAGINDGDVVIIRETNTADNGDIVVALVEDQEATLKKFYRR- 197
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G +I L + N Y + ++ R++
Sbjct: 198 GNAIALEAANPAYETRVLPEDQVKVQGRLV 227
>gi|307258155|ref|ZP_07539905.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306863340|gb|EFM95273.1| Possible LexA family repressor/S24 family protease [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 107
Score = 43.8 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK------VLI 186
+ K + SM P + GDI+I++ ++ + G+ + + K L
Sbjct: 6 VSGDAFALKIKGDSMEPEFIAGDIVIIDPRVEPHAGEFVAAINGDYEATFKKYRPLEDLD 65
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ +L+ LN + + +I RI+
Sbjct: 66 EYGRQHFELVPLNPDWHSMSSLKQEI----RII 94
>gi|1854946|gb|AAB48301.1| RvuZ homolog [Rattus norvegicus]
Length = 79
Score = 43.8 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 137 DTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SM ++ GD LI++ A++ GD +++ GD+ K L +S
Sbjct: 6 TYVVLVSGDSMTGAGIF-DGDYLIVSRALEAKSGD-VVVACLNGDVFVKRLGR-CQKSYV 62
Query: 195 LMSLNCCYPVD 205
L S + Y
Sbjct: 63 LQSEHPDYAPR 73
>gi|257438216|ref|ZP_05613971.1| LexA repressor [Faecalibacterium prausnitzii A2-165]
gi|257199293|gb|EEU97577.1| LexA repressor [Faecalibacterium prausnitzii A2-165]
Length = 211
Score = 43.4 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 33/209 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
+ + ++ S A++ GL ++ K K G PS E++ ++ A + +LL
Sbjct: 8 ALCQARGISRSRAAQEMGLSNSTVTKWKNTGAT-----PSGETLARVSAYFGVPVGELLG 62
Query: 75 ---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
+G PLL + P + N G I
Sbjct: 63 EAVPSVQEERKLPEGAVPFDPALTAPLLGTVRA---------GLPMYAEENIEGYIPITR 113
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
Y + + SM + + D +++ +V G ++ + K
Sbjct: 114 KDGARY------FWLRVRGDSMNAVGISENDEILVREQPEVENGQLAVVMVNGDEATVKY 167
Query: 185 LISRRGRSIDL--MSLNCCYPVDTVEMSD 211
+ G + L S N + ++
Sbjct: 168 F-RQEGSLVVLTPKSFNPVHQPQIYDLKR 195
>gi|229117182|ref|ZP_04246561.1| Phage transcriptional repressor [Bacillus cereus Rock1-3]
gi|228666350|gb|EEL21813.1| Phage transcriptional repressor [Bacillus cereus Rock1-3]
Length = 223
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLEV 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L T + IP++ +G+ F + + +P
Sbjct: 69 LTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNDPIHEPQTYDLSAEDVKIIGRVVQA 219
>gi|82776514|ref|YP_402863.1| DNA polymerase V subunit UmuD [Shigella dysenteriae Sd197]
gi|301648166|ref|ZP_07247919.1| peptidase S24-like domain protein [Escherichia coli MS 146-1]
gi|307137796|ref|ZP_07497152.1| DNA polymerase V subunit UmuD [Escherichia coli H736]
gi|309789205|ref|ZP_07683798.1| UmuD protein [Shigella dysenteriae 1617]
gi|331641709|ref|ZP_08342844.1| protein UmuD [Escherichia coli H736]
gi|331652213|ref|ZP_08353232.1| protein UmuD [Escherichia coli M718]
gi|81240662|gb|ABB61372.1| UmuD [Shigella dysenteriae Sd197]
gi|301073752|gb|EFK88558.1| peptidase S24-like domain protein [Escherichia coli MS 146-1]
gi|308922959|gb|EFP68473.1| UmuD protein [Shigella dysenteriae 1617]
gi|315615980|gb|EFU96606.1| UmuD protein [Escherichia coli 3431]
gi|331038507|gb|EGI10727.1| protein UmuD [Escherichia coli H736]
gi|331050491|gb|EGI22549.1| protein UmuD [Escherichia coli M718]
Length = 139
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|15801405|ref|NP_287422.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 EDL933]
gi|15830932|ref|NP_309705.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. Sakai]
gi|16129146|ref|NP_415701.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
MG1655]
gi|24112570|ref|NP_707080.1| DNA polymerase V subunit UmuD [Shigella flexneri 2a str. 301]
gi|30062700|ref|NP_836871.1| DNA polymerase V subunit UmuD [Shigella flexneri 2a str. 2457T]
gi|74311713|ref|YP_310132.1| DNA polymerase V subunit UmuD [Shigella sonnei Ss046]
gi|82544364|ref|YP_408311.1| DNA polymerase V subunit UmuD [Shigella boydii Sb227]
gi|89108028|ref|AP_001808.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
W3110]
gi|110641408|ref|YP_669138.1| DNA polymerase V subunit UmuD [Escherichia coli 536]
gi|110805182|ref|YP_688702.1| DNA polymerase V subunit UmuD [Shigella flexneri 5 str. 8401]
gi|157159399|ref|YP_001462433.1| DNA polymerase V subunit UmuD [Escherichia coli E24377A]
gi|157160686|ref|YP_001458004.1| DNA polymerase V subunit UmuD [Escherichia coli HS]
gi|168752764|ref|ZP_02777786.1| protein UmuD [Escherichia coli O157:H7 str. EC4113]
gi|168756548|ref|ZP_02781555.1| protein UmuD [Escherichia coli O157:H7 str. EC4401]
gi|168771074|ref|ZP_02796081.1| protein UmuD [Escherichia coli O157:H7 str. EC4486]
gi|168778216|ref|ZP_02803223.1| protein UmuD [Escherichia coli O157:H7 str. EC4196]
gi|168782541|ref|ZP_02807548.1| protein UmuD [Escherichia coli O157:H7 str. EC4076]
gi|168787684|ref|ZP_02812691.1| protein UmuD [Escherichia coli O157:H7 str. EC869]
gi|170020449|ref|YP_001725403.1| DNA polymerase V subunit UmuD [Escherichia coli ATCC 8739]
gi|170080811|ref|YP_001730131.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
DH10B]
gi|187732911|ref|YP_001879965.1| DNA polymerase V subunit UmuD [Shigella boydii CDC 3083-94]
gi|188493785|ref|ZP_03001055.1| protein UmuD [Escherichia coli 53638]
gi|191169122|ref|ZP_03030882.1| protein UmuD [Escherichia coli B7A]
gi|191170936|ref|ZP_03032487.1| protein UmuD [Escherichia coli F11]
gi|193066783|ref|ZP_03047799.1| protein UmuD [Escherichia coli E22]
gi|193071165|ref|ZP_03052088.1| protein UmuD [Escherichia coli E110019]
gi|194430792|ref|ZP_03063189.1| protein UmuD [Escherichia coli B171]
gi|194437085|ref|ZP_03069184.1| protein UmuD [Escherichia coli 101-1]
gi|195938838|ref|ZP_03084220.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str.
EC4024]
gi|208809140|ref|ZP_03251477.1| protein UmuD [Escherichia coli O157:H7 str. EC4206]
gi|208815181|ref|ZP_03256360.1| protein UmuD [Escherichia coli O157:H7 str. EC4045]
gi|208822366|ref|ZP_03262685.1| protein UmuD [Escherichia coli O157:H7 str. EC4042]
gi|209400795|ref|YP_002270123.1| protein UmuD [Escherichia coli O157:H7 str. EC4115]
gi|209918422|ref|YP_002292506.1| DNA polymerase V subunit UmuD [Escherichia coli SE11]
gi|217328507|ref|ZP_03444589.1| protein UmuD [Escherichia coli O157:H7 str. TW14588]
gi|218553738|ref|YP_002386651.1| DNA polymerase V subunit UmuD [Escherichia coli IAI1]
gi|218694697|ref|YP_002402364.1| DNA polymerase V subunit UmuD [Escherichia coli 55989]
gi|218704698|ref|YP_002412217.1| DNA polymerase V subunit UmuD [Escherichia coli UMN026]
gi|238900414|ref|YP_002926210.1| DNA polymerase V, subunit D [Escherichia coli BW2952]
gi|253773819|ref|YP_003036650.1| DNA polymerase V subunit UmuD [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161265|ref|YP_003044373.1| DNA polymerase V subunit UmuD [Escherichia coli B str. REL606]
gi|254792660|ref|YP_003077497.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str.
TW14359]
gi|256018567|ref|ZP_05432432.1| DNA polymerase V subunit UmuD [Shigella sp. D9]
gi|256023141|ref|ZP_05437006.1| DNA polymerase V subunit UmuD [Escherichia sp. 4_1_40B]
gi|260843475|ref|YP_003221253.1| DNA polymerase V subunit D [Escherichia coli O103:H2 str. 12009]
gi|260854844|ref|YP_003228735.1| DNA polymerase V subunit D [Escherichia coli O26:H11 str. 11368]
gi|261224920|ref|ZP_05939201.1| DNA polymerase V, subunit D [Escherichia coli O157:H7 str.
FRIK2000]
gi|261257223|ref|ZP_05949756.1| DNA polymerase V subunit D [Escherichia coli O157:H7 str. FRIK966]
gi|291282198|ref|YP_003499016.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. CB9615]
gi|293404718|ref|ZP_06648710.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1412]
gi|293409561|ref|ZP_06653137.1| DNA polymerase V subunit UmuD [Escherichia coli B354]
gi|293414453|ref|ZP_06657102.1| DNA polymerase V subunit UmuD [Escherichia coli B185]
gi|293433501|ref|ZP_06661929.1| DNA polymerase V subunit UmuD [Escherichia coli B088]
gi|297516123|ref|ZP_06934509.1| DNA polymerase V subunit UmuD [Escherichia coli OP50]
gi|298380361|ref|ZP_06989960.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1302]
gi|300816870|ref|ZP_07097090.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
gi|300821050|ref|ZP_07101199.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
gi|300896557|ref|ZP_07115078.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
gi|300906914|ref|ZP_07124588.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
gi|300917942|ref|ZP_07134573.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
gi|300921855|ref|ZP_07138012.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
gi|300928274|ref|ZP_07143811.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
gi|300951645|ref|ZP_07165469.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
gi|300955578|ref|ZP_07167937.1| peptidase S24-like domain protein [Escherichia coli MS 175-1]
gi|300996032|ref|ZP_07181366.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
gi|301017203|ref|ZP_07181984.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
gi|301029520|ref|ZP_07192600.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
gi|301307334|ref|ZP_07213343.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
gi|301327108|ref|ZP_07220388.1| peptidase S24-like domain protein [Escherichia coli MS 78-1]
gi|307310063|ref|ZP_07589713.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
gi|309794268|ref|ZP_07688692.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
gi|312971365|ref|ZP_07785540.1| protein umuD [Escherichia coli 1827-70]
gi|331657227|ref|ZP_08358189.1| protein UmuD [Escherichia coli TA206]
gi|331662576|ref|ZP_08363499.1| protein UmuD [Escherichia coli TA143]
gi|331667564|ref|ZP_08368428.1| protein UmuD [Escherichia coli TA271]
gi|331676959|ref|ZP_08377655.1| protein UmuD [Escherichia coli H591]
gi|332279629|ref|ZP_08392042.1| UmuD protein [Shigella sp. D9]
gi|84029417|sp|P0AG12|UMUD_ECO57 RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
gi|84029418|sp|P0AG11|UMUD_ECOLI RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
gi|84029419|sp|P0AG13|UMUD_SHIFL RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
gi|12514880|gb|AAG56034.1|AE005335_7 SOS mutagenesis; error-prone repair; processed to UmuD'; forms
complex with UmuC [Escherichia coli O157:H7 str. EDL933]
gi|148125|gb|AAA24728.1| UmuD protein [Escherichia coli]
gi|148128|gb|AAA98073.1| umuD [Escherichia coli]
gi|1651580|dbj|BAA36030.1| DNA polymerase V, subunit D [Escherichia coli str. K12 substr.
W3110]
gi|1787431|gb|AAC74267.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
MG1655]
gi|13361142|dbj|BAB35101.1| UmuD protein [Escherichia coli O157:H7 str. Sakai]
gi|24051468|gb|AAN42787.1| mutagenesis and repair protein [Shigella flexneri 2a str. 301]
gi|30040948|gb|AAP16678.1| mutagenesis and repair protein [Shigella flexneri 2a str. 2457T]
gi|73855190|gb|AAZ87897.1| UmuD [Shigella sonnei Ss046]
gi|81245775|gb|ABB66483.1| UmuD [Shigella boydii Sb227]
gi|110343000|gb|ABG69237.1| UmuD protein [Escherichia coli 536]
gi|110614730|gb|ABF03397.1| SOS mutagenesis [Shigella flexneri 5 str. 8401]
gi|157066366|gb|ABV05621.1| protein UmuD [Escherichia coli HS]
gi|157081429|gb|ABV21137.1| protein UmuD [Escherichia coli E24377A]
gi|169755377|gb|ACA78076.1| peptidase S24 and S26 domain protein [Escherichia coli ATCC 8739]
gi|169888646|gb|ACB02353.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
DH10B]
gi|187429903|gb|ACD09177.1| protein UmuD [Shigella boydii CDC 3083-94]
gi|187766778|gb|EDU30622.1| protein UmuD [Escherichia coli O157:H7 str. EC4196]
gi|188013531|gb|EDU51653.1| protein UmuD [Escherichia coli O157:H7 str. EC4113]
gi|188488984|gb|EDU64087.1| protein UmuD [Escherichia coli 53638]
gi|189000043|gb|EDU69029.1| protein UmuD [Escherichia coli O157:H7 str. EC4076]
gi|189356367|gb|EDU74786.1| protein UmuD [Escherichia coli O157:H7 str. EC4401]
gi|189360079|gb|EDU78498.1| protein UmuD [Escherichia coli O157:H7 str. EC4486]
gi|189372424|gb|EDU90840.1| protein UmuD [Escherichia coli O157:H7 str. EC869]
gi|190900836|gb|EDV60625.1| protein UmuD [Escherichia coli B7A]
gi|190908668|gb|EDV68256.1| protein UmuD [Escherichia coli F11]
gi|192925573|gb|EDV80251.1| protein UmuD [Escherichia coli E22]
gi|192955497|gb|EDV85977.1| protein UmuD [Escherichia coli E110019]
gi|194411164|gb|EDX27589.1| protein UmuD [Escherichia coli B171]
gi|194424068|gb|EDX40056.1| protein UmuD [Escherichia coli 101-1]
gi|208728941|gb|EDZ78542.1| protein UmuD [Escherichia coli O157:H7 str. EC4206]
gi|208731829|gb|EDZ80517.1| protein UmuD [Escherichia coli O157:H7 str. EC4045]
gi|208737851|gb|EDZ85534.1| protein UmuD [Escherichia coli O157:H7 str. EC4042]
gi|209162195|gb|ACI39628.1| protein UmuD [Escherichia coli O157:H7 str. EC4115]
gi|209772708|gb|ACI84666.1| UmuD protein [Escherichia coli]
gi|209772710|gb|ACI84667.1| UmuD protein [Escherichia coli]
gi|209772712|gb|ACI84668.1| UmuD protein [Escherichia coli]
gi|209772714|gb|ACI84669.1| UmuD protein [Escherichia coli]
gi|209772716|gb|ACI84670.1| UmuD protein [Escherichia coli]
gi|209911681|dbj|BAG76755.1| mutagenesis and repair protein UmuD [Escherichia coli SE11]
gi|217318934|gb|EEC27360.1| protein UmuD [Escherichia coli O157:H7 str. TW14588]
gi|218351429|emb|CAU97137.1| DNA polymerase V, subunit D [Escherichia coli 55989]
gi|218360506|emb|CAQ98062.1| DNA polymerase V, subunit D [Escherichia coli IAI1]
gi|218431795|emb|CAR12680.1| DNA polymerase V, subunit D [Escherichia coli UMN026]
gi|238860840|gb|ACR62838.1| DNA polymerase V, subunit D [Escherichia coli BW2952]
gi|242376963|emb|CAQ31685.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
complex with UmuC, subunit of DNA polymerase V
[Escherichia coli BL21(DE3)]
gi|253324863|gb|ACT29465.1| peptidase S24 and S26 domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973166|gb|ACT38837.1| DNA polymerase V, subunit D [Escherichia coli B str. REL606]
gi|253977380|gb|ACT43050.1| DNA polymerase V, subunit D [Escherichia coli BL21(DE3)]
gi|254592060|gb|ACT71421.1| DNA polymerase V, subunit D [Escherichia coli O157:H7 str. TW14359]
gi|257753493|dbj|BAI24995.1| DNA polymerase V subunit D [Escherichia coli O26:H11 str. 11368]
gi|257758622|dbj|BAI30119.1| DNA polymerase V subunit D [Escherichia coli O103:H2 str. 12009]
gi|260449683|gb|ACX40105.1| peptidase S24 and S26 domain protein [Escherichia coli DH1]
gi|281600596|gb|ADA73580.1| DNA polymerase V subunit [Shigella flexneri 2002017]
gi|284920987|emb|CBG34052.1| SOS mutagenesis and repair protein [Escherichia coli 042]
gi|290762071|gb|ADD56032.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. CB9615]
gi|291324320|gb|EFE63742.1| DNA polymerase V subunit UmuD [Escherichia coli B088]
gi|291426926|gb|EFE99952.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1412]
gi|291434511|gb|EFF07484.1| DNA polymerase V subunit UmuD [Escherichia coli B185]
gi|291470029|gb|EFF12513.1| DNA polymerase V subunit UmuD [Escherichia coli B354]
gi|298277803|gb|EFI19317.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1302]
gi|299877584|gb|EFI85795.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
gi|300304639|gb|EFJ59159.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
gi|300317554|gb|EFJ67338.1| peptidase S24-like domain protein [Escherichia coli MS 175-1]
gi|300359586|gb|EFJ75456.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
gi|300400334|gb|EFJ83872.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
gi|300401347|gb|EFJ84885.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
gi|300414855|gb|EFJ98165.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
gi|300421781|gb|EFK05092.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
gi|300449091|gb|EFK12711.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
gi|300463743|gb|EFK27236.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
gi|300526349|gb|EFK47418.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
gi|300530644|gb|EFK51706.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
gi|300837480|gb|EFK65240.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
gi|300846286|gb|EFK74046.1| peptidase S24-like domain protein [Escherichia coli MS 78-1]
gi|306909781|gb|EFN40275.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
gi|308122173|gb|EFO59435.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
gi|309701483|emb|CBJ00790.1| SOS mutagenesis and repair protein [Escherichia coli ETEC H10407]
gi|310335962|gb|EFQ01162.1| protein umuD [Escherichia coli 1827-70]
gi|313649361|gb|EFS13792.1| UmuD protein [Shigella flexneri 2a str. 2457T]
gi|315060433|gb|ADT74760.1| DNA polymerase V, subunit D [Escherichia coli W]
gi|315135819|dbj|BAJ42978.1| DNA polymerase V subunit UmuD [Escherichia coli DH1]
gi|315254862|gb|EFU34830.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
gi|320181810|gb|EFW56720.1| Error-prone repair protein UmuD [Shigella boydii ATCC 9905]
gi|320183054|gb|EFW57918.1| Error-prone repair protein UmuD [Shigella flexneri CDC 796-83]
gi|320187967|gb|EFW62634.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str.
EC1212]
gi|320195837|gb|EFW70462.1| Error-prone repair protein UmuD [Escherichia coli WV_060327]
gi|320199220|gb|EFW73811.1| Error-prone repair protein UmuD [Escherichia coli EC4100B]
gi|320637328|gb|EFX07135.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. G5101]
gi|320643189|gb|EFX12390.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H- str.
493-89]
gi|320648126|gb|EFX16802.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H- str. H
2687]
gi|320653960|gb|EFX22034.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320659439|gb|EFX27008.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. USDA
5905]
gi|320664576|gb|EFX31727.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str.
LSU-61]
gi|323153149|gb|EFZ39413.1| UmuD protein [Escherichia coli EPECa14]
gi|323162294|gb|EFZ48152.1| protein umuD [Escherichia coli E128010]
gi|323165667|gb|EFZ51454.1| protein umuD [Shigella sonnei 53G]
gi|323172469|gb|EFZ58106.1| protein umuD [Escherichia coli LT-68]
gi|323185656|gb|EFZ71017.1| protein umuD [Escherichia coli 1357]
gi|323379004|gb|ADX51272.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli KO11]
gi|323937901|gb|EGB34165.1| peptidase S24 [Escherichia coli E1520]
gi|323942461|gb|EGB38629.1| peptidase S24 [Escherichia coli E482]
gi|323947535|gb|EGB43539.1| peptidase S24 [Escherichia coli H120]
gi|323962760|gb|EGB58338.1| peptidase S24 [Escherichia coli H489]
gi|323964674|gb|EGB60145.1| peptidase S24 [Escherichia coli M863]
gi|323973420|gb|EGB68607.1| peptidase S24 [Escherichia coli TA007]
gi|323977255|gb|EGB72342.1| peptidase S24 [Escherichia coli TW10509]
gi|324015677|gb|EGB84896.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
gi|324017572|gb|EGB86791.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
gi|324117269|gb|EGC11176.1| peptidase S24 [Escherichia coli E1167]
gi|326342722|gb|EGD66492.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str.
1044]
gi|326346428|gb|EGD70165.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str.
1125]
gi|327253865|gb|EGE65494.1| protein umuD [Escherichia coli STEC_7v]
gi|331055475|gb|EGI27484.1| protein UmuD [Escherichia coli TA206]
gi|331060998|gb|EGI32962.1| protein UmuD [Escherichia coli TA143]
gi|331065149|gb|EGI37044.1| protein UmuD [Escherichia coli TA271]
gi|331075648|gb|EGI46946.1| protein UmuD [Escherichia coli H591]
gi|332094406|gb|EGI99455.1| protein umuD [Shigella boydii 3594-74]
gi|332101981|gb|EGJ05327.1| UmuD protein [Shigella sp. D9]
gi|332342762|gb|AEE56096.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332757824|gb|EGJ88151.1| protein umuD [Shigella flexneri 4343-70]
gi|332759425|gb|EGJ89733.1| protein umuD [Shigella flexneri 2747-71]
gi|332760265|gb|EGJ90555.1| protein umuD [Shigella flexneri K-671]
gi|332767406|gb|EGJ97600.1| UmuD protein [Shigella flexneri 2930-71]
gi|333005615|gb|EGK25133.1| protein umuD [Shigella flexneri K-218]
gi|333019357|gb|EGK38640.1| protein umuD [Shigella flexneri K-304]
Length = 139
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|315930359|gb|EFV09439.1| peptidase S24-like family protein [Campylobacter jejuni subsp.
jejuni 305]
Length = 222
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G++P +FN K + I L N +I
Sbjct: 25 DILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYPQ------ILNFLNERNISINY 78
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + +I LY + GG G + + E+
Sbjct: 79 FFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDCSELIVDEKLLN 129
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 130 FFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 188
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 189 GVI-LHSLNPLYKD 201
>gi|333005008|gb|EGK24528.1| protein umuD [Shigella flexneri VA-6]
Length = 139
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQRLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB
1108]
Length = 259
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-C 200
SM P+ G ++ N + ++ + G I K L G I + S N
Sbjct: 170 ISGNSMSPVLHDGSTVLANMNESLVVDGKMYVIDHGGQIRVKALYRLPGGGIRVRSYNTA 229
Query: 201 CYPV-----DTVEMSDIEWIARILW 220
+P +E S I + R+ W
Sbjct: 230 EHPDETYTAREMEDSRIRIMGRVFW 254
>gi|308047905|ref|YP_003911471.1| SOS-response transcriptional repressor, LexA [Ferrimonas balearica
DSM 9799]
gi|307630095|gb|ADN74397.1| SOS-response transcriptional repressor, LexA [Ferrimonas balearica
DSM 9799]
Length = 207
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + + SM + GD+L ++ G ++ + ++ K R G
Sbjct: 111 PSANYLLRVRGDSMKEIGILDGDLLAVHQTQDARNGQVVVARVGEDEVTVKRFERR-GNV 169
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
+ L + N Y V++ D
Sbjct: 170 VYLHAENAEYEPIVVDLEDTA 190
>gi|293381388|ref|ZP_06627389.1| signal peptidase I [Lactobacillus crispatus 214-1]
gi|290922078|gb|EFD99079.1| signal peptidase I [Lactobacillus crispatus 214-1]
Length = 210
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P ++ GD LI Q+ G+ +++K G + K +I G I
Sbjct: 41 TVSGPSMQPTFQNGDRLIAERHAQIKRGEVVIVKAPDEPGALYIKRVIGLPGEKI 95
>gi|256843912|ref|ZP_05549399.1| signal peptidase I [Lactobacillus crispatus 125-2-CHN]
gi|295693815|ref|YP_003602425.1| signal peptidase i [Lactobacillus crispatus ST1]
gi|256613817|gb|EEU19019.1| signal peptidase I [Lactobacillus crispatus 125-2-CHN]
gi|295031921|emb|CBL51400.1| Signal peptidase I [Lactobacillus crispatus ST1]
Length = 210
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P ++ GD LI Q+ G+ +++K G + K +I G I
Sbjct: 41 TVSGPSMQPTFQNGDRLIAERHAQIKRGEVVIVKAPDEPGALYIKRVIGLPGEKI 95
>gi|299483505|gb|ADJ19586.1| putative transcriptional repressor protein [Treponema primitia
ZAS-2]
Length = 242
Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 30/200 (15%)
Query: 21 NLTPSGLARKAGLDPTSFNKSKRFG---IEGRNRWPSTESIFKILAATNETICQLLDLPF 77
LT G A GL SK G G + PS E++ K+ N + L
Sbjct: 51 GLTKKGFAESLGL-------SKALGYQISTGMLK-PSRETLEKLSFIYNVNLNWFL---L 99
Query: 78 SDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+G E ++ I LL +G G + + T+ +P +Q
Sbjct: 100 GEGSPFETEKATIKLLRQEAAAGQGREIEDY-----AEEETLKLPRSLISPYRPENLQ-- 152
Query: 137 DTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-SRRGRSI 193
SM +Y GD +I + + G+ + + ++ K + RS+
Sbjct: 153 --AVYVAGDSMIGEHIY-NGDAVIFHPG--LTEGNGIYVLSLDTSLLVKRVSFDELPRSV 207
Query: 194 DLMSLNCCYPVDTVEMSDIE 213
L+S N YP + +++E
Sbjct: 208 FLISANPAYPPRQISGAELE 227
>gi|218884748|ref|YP_002429130.1| signal peptidase [Desulfurococcus kamchatkensis 1221n]
gi|218766364|gb|ACL11763.1| signal peptidase [Desulfurococcus kamchatkensis 1221n]
Length = 152
Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVA 182
+ + SMLP R+GDI+I+ A + GD ++I G ++
Sbjct: 34 LNGFSPLAVVKGYSMLPTLREGDIVIVQKATPEAIRPGD-VIIYSTGGKLII 84
>gi|114771089|ref|ZP_01448529.1| LexA repressor [alpha proteobacterium HTCC2255]
gi|114548371|gb|EAU51257.1| LexA repressor [alpha proteobacterium HTCC2255]
Length = 228
Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 38/205 (18%)
Query: 42 KRFGIEGRNRWPSTESIFKILAA-TNETICQLLDLPFSDG--RTTEKKEKEIPLLYFPPS 98
KR +G PS + + + L + I +L+ G R + + I +L P S
Sbjct: 15 KRLQKDGVP--PSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHRARAIEILRLPES 72
Query: 99 GSGGFFDS------------GVFPTGNKWNTVGVPEIRSPHNG--IYAIQ---------- 134
GG F P N + +P + G I AIQ
Sbjct: 73 IDGGGFQPRIIEGSLTPPPAAALPIEAA-NALTLPIMGRIAAGTPIEAIQQVSNNVSVPG 131
Query: 135 ------TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + + SM GDI+++N GD ++ + K L
Sbjct: 132 EMLKNSGRHYALEVKGDSMIEAGINDGDIVVINEQNDAENGDIVVALVDDQEATLKRL-R 190
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI 212
+RG + L + N Y +
Sbjct: 191 KRGTVVALEAANPAYETRVYRDDQV 215
>gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia coli
O157:H7 EDL933]
gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia coli
O157:H7 str. EDL933]
Length = 215
Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 32/215 (14%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK---------RFGIEGRNRWPSTE 56
H+ I E I + E L+ + LA+ G S+ + +
Sbjct: 5 HEIIGERIKSLREAKGLSQAQLAKLCGWAA----PSRLGNYELGTRKVSADD-------- 52
Query: 57 SIFKIL-AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+L AA + + F + ++ E PL + G F T +
Sbjct: 53 --ALVLGAALGVSP---AKIMFGEDSDAVFRQYEYPLFSSVQA---GPFXEVGXYTASDA 104
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
VP + ++ + T + P + +G +++++ A V GD +
Sbjct: 105 KAW-VPTTTKASEKAFWLEVKGHSM-TAPQGVRPSFPEGMLILVDPAEPVESGDFCVASA 162
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
+ L+ LN Y + S
Sbjct: 163 NGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHS 197
>gi|86609770|ref|YP_478532.1| S24 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558312|gb|ABD03269.1| peptidase, S24 (LexA) family [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 219
Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR----LLIKPRTGDIVAKVLISRR 189
+ + + Q SM P GD + + GD + + GD++ K L
Sbjct: 123 PAELSLIRVQGDSMSPTLEDGDWIFVERQ---EGGDLGCEGIYVFQMDGDLLVKRLQRLP 179
Query: 190 GRSIDLMSLNCCYPVDTVEMSD 211
G + ++S N +P +++D
Sbjct: 180 GSQVKVISDNPRFPPFVADLAD 201
>gi|257463935|ref|ZP_05628320.1| SOS-response transcriptional repressor, LexA [Fusobacterium sp.
D12]
gi|317061461|ref|ZP_07925946.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313687137|gb|EFS23972.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 214
Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 16/128 (12%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
E+ IPL +G G F + + +P +R+ + +
Sbjct: 88 EEGPAAIPLFPRISAGI-GVFGEE-----EVEDYISIPGVRNLEEVF--------SVRVK 133
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P R I++ +Q++ G + G+ K L + I LMS N Y
Sbjct: 134 GDSMEPTIRNSSIIVCRQNMQIHNG-EIGAFLVNGEAFVKRLQVKS-DYIVLMSDNPNYQ 191
Query: 204 VDTVEMSD 211
+ SD
Sbjct: 192 PIYISPSD 199
>gi|253577142|ref|ZP_04854463.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843524|gb|EES71551.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
Length = 208
Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 38/148 (25%), Gaps = 24/148 (16%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFD------------SGVFPTGNKW---NTVGVPEIRS 125
R K + I LL S + F + P + +PE
Sbjct: 57 RRDPTKPRAIELLGQEESENYNLFAHSVTRVPIVGKVTAGVPITATENIEDYFPLPEH-- 114
Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
YA SM GD +I+ N GD ++ + K
Sbjct: 115 -----YAADGDIFMLSVVGDSMIEAGIHNGDYVIVRQQQTANNGDIVVAMTEDDEATVKT 169
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ I L N ++ I
Sbjct: 170 F-YKESDHIRLQPENSTMEPLRLKHVTI 196
>gi|319956938|ref|YP_004168201.1| phage repressor [Nitratifractor salsuginis DSM 16511]
gi|319419342|gb|ADV46452.1| putative phage repressor [Nitratifractor salsuginis DSM 16511]
Length = 200
Score = 43.4 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 28/148 (18%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYAIQT 135
D + IPL+ S PTG + + VP + YA++
Sbjct: 64 DETQEIPLNRYIPLIGEA---------SCGVPTGAFYESDEYIAVP-PGVDASSSYAVKA 113
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSID 194
SM P G+I++ ++ D ++ G+ K + + S+
Sbjct: 114 -------SGDSMWPTIADGEIVVCDTKRPP--SDNSVVHYTFDGESGIKRVKRQSDGSVI 164
Query: 195 LMSLNCCYP---VDTVEMSDIE--WIAR 217
L+ N + + + AR
Sbjct: 165 LLPDNTSCEGCTPIVIPKDRVAELYTAR 192
>gi|119961687|ref|YP_947146.1| SOS mutagenesis protein UmuD [Arthrobacter aurescens TC1]
gi|119948546|gb|ABM07457.1| putative SOS mutagenesis protein UmuD [Arthrobacter aurescens TC1]
Length = 143
Score = 43.4 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ +P+ + + T + SM GD LI+N A++
Sbjct: 27 AAGYPSPA---QDYFDGRIDLNEHLIKDVTSTFVVRVTGQSMEGAGISDGDELIVNRALE 83
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G +++ G++ K L + L + N YP V
Sbjct: 84 PKDGS-VVVAVLDGELTIKRL-RVTPSGVILQADNPKYPDIRVPA 126
>gi|227522302|ref|ZP_03952351.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus hilgardii ATCC 8290]
gi|227090509|gb|EEI25821.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus hilgardii ATCC 8290]
Length = 235
Score = 43.4 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 35/85 (41%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D SM PL +KG + ++ +V G+ ++ R + K + ++
Sbjct: 150 GADELITVDGDSMEPLLKKGSQVFIHYQPEVEDGEIAIVHIRDIGVTCKKIYVNEDNTVT 209
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
L S+N Y + ++ I +++
Sbjct: 210 LRSINEAYDDMHFDCDEVNVIGKVI 234
>gi|229844478|ref|ZP_04464618.1| putative prophage repressor [Haemophilus influenzae 6P18H1]
gi|229812727|gb|EEP48416.1| putative prophage repressor [Haemophilus influenzae 6P18H1]
Length = 221
Score = 43.4 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA---KVLISRRGRS 192
+ + SMLP + +GD+++++ I G + + K L +R
Sbjct: 126 NSFYLRIERKSMLPRFNEGDLVLIDPDIAPTPGKFVAAINGNNEATFKQYKELGTRTSEG 185
Query: 193 I---DLMSLNCCYPVDTVEMSDIEWIARIL 219
I +L+ LN +P + DI RI+
Sbjct: 186 IPHFELVPLNPMFPTLSSLNQDI----RII 211
>gi|229098164|ref|ZP_04229112.1| Phage transcriptional repressor [Bacillus cereus Rock3-29]
gi|228685355|gb|EEL39285.1| Phage transcriptional repressor [Bacillus cereus Rock3-29]
Length = 223
Score = 43.4 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLEV 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L T + IP++ +G+ F + + +P
Sbjct: 69 LTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSLN--CCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L+ + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNHPIHEPQTYDLSAEDVKIIGRVVQA 219
>gi|11138336|gb|AAG31331.1|AF182207_5 ORF 221 [Lactobacillus phage mv4]
Length = 221
Score = 43.4 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 17/156 (10%)
Query: 56 ESIFKILAATNETIC-QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
E + +NE I + +P + + +IPL+ G D +
Sbjct: 62 EKLADFFRVSNEEIDPRFATMPENMVPVDQSHLVKIPLIGHIACGEPITADQNI----EG 117
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ T P+ P + I+A++ + SM P GDI + +V G +
Sbjct: 118 YITEYFPDHVDPDS-IFALKCE-------GDSMEPYILDGDIAYIRQQPEVEDG-EIAAV 168
Query: 175 PRTGDIVAKVLIS--RRGRSIDLMSLNCCYPVDTVE 208
GD A L + G + L+ N Y ++
Sbjct: 169 LVDGDTRAS-LKRVKKVGNQVFLLPDNPHYSPIVLD 203
>gi|99081161|ref|YP_613315.1| putative phage repressor [Ruegeria sp. TM1040]
gi|99037441|gb|ABF64053.1| hypothetical protein TM1040_1320 [Ruegeria sp. TM1040]
Length = 211
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTV 118
+I A+ + L +G T I + +G+ FD+ +P G V
Sbjct: 52 RIAASFGTNLENFL-----EGNTAPSVRPTISIAGTVGAGAQVPVFDA--YPKGGG-PQV 103
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-----GDRLLI 173
P SPH GI A++ + SM P+Y D+L + + G R +
Sbjct: 104 ECPPGLSPH-GIVAVE-------VEGDSMEPVYSDRDLLFYSRNGHDSVPSDIIGHRCVC 155
Query: 174 KPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ G K + + L+SLN + ++W AR+
Sbjct: 156 EDEDGMGWVKQVKAGDEPGLFHLISLNPGANN--IWNVRLKWAARV 199
>gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
Length = 264
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 27/142 (19%)
Query: 87 EKEIPLLYFPPSGSGGF---FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
++++P+ G G FD + + +P + G Y +
Sbjct: 135 QRDLPVYAAAKGGDGHVIITFDPISY--------MKMPAVLQGVKGGYGL-------LLS 179
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDLMSLN 199
SM+P YR G+ ++N + + +++ + + + K L+ R L N
Sbjct: 180 GESMVPAYRPGETALVNPNLPPMRDEDVILYHTSEMDENEAIIKRLVGYNDREWMLEQYN 239
Query: 200 CCYPVDTVEMSDIEW--IARIL 219
+W R++
Sbjct: 240 PHKEFKEFRA---DWPVCHRVV 258
>gi|85703338|ref|ZP_01034442.1| LexA repressor [Roseovarius sp. 217]
gi|85672266|gb|EAQ27123.1| LexA repressor [Roseovarius sp. 217]
Length = 233
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM GD++I+ + GD ++ + K R G +I
Sbjct: 143 ANHYALEVRGDSMIEAGINDGDVVIIRETSVADNGDIVVALIEDQEATLKRFYRR-GNAI 201
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y ++ R++
Sbjct: 202 ALEAANPAYETRLFPEDQVQVQGRLV 227
>gi|300717122|ref|YP_003741925.1| DNA polymerase V, subunit D [Erwinia billingiae Eb661]
gi|299062958|emb|CAX60078.1| DNA polymerase V, subunit D [Erwinia billingiae Eb661]
Length = 139
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
FP+ + V + + + + + SM GD+L+++S+++
Sbjct: 25 GFPSPAA-DYVE--SRIDLNELLVSHPSATYFIRAAGNSMIEGNINDGDMLVVDSSLKPQ 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GDR++ G+ K L S+ L+ +N Y ++
Sbjct: 82 HGDRVIAAI-DGEFTLKKLQ-LTP-SVKLLPMNPSYAAIDID 120
>gi|34541026|ref|NP_905505.1| umuD protein [Porphyromonas gingivalis W83]
gi|34397341|gb|AAQ66404.1| umuD protein [Porphyromonas gingivalis W83]
Length = 141
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 19/136 (13%)
Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
LL F G FP+ + + + ++ + + + SM +
Sbjct: 14 LLPFADEGI-----RAGFPS-PAQDYMDI--AIDLNHELITHPYSTFYGRVKGNSMEDAH 65
Query: 152 R-KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
GDIL+++ +++ GD + + G+ K + + I L N YP V
Sbjct: 66 VFDGDILVIDKSLEARDGD-MAVCFLDGEFTLKTI-RIKSEEILLEPANPDYPTIHVSAD 123
Query: 211 D--IEW------IARI 218
+ + W I +I
Sbjct: 124 NDFVIWGIVTYCIHKI 139
>gi|26247496|ref|NP_753536.1| DNA polymerase V subunit UmuD [Escherichia coli CFT073]
gi|91210396|ref|YP_540382.1| DNA polymerase V subunit UmuD [Escherichia coli UTI89]
gi|117623397|ref|YP_852310.1| DNA polymerase V subunit UmuD [Escherichia coli APEC O1]
gi|218558107|ref|YP_002391020.1| DNA polymerase V subunit UmuD [Escherichia coli S88]
gi|227886404|ref|ZP_04004209.1| DNA polymerase V subunit UmuD [Escherichia coli 83972]
gi|237705138|ref|ZP_04535619.1| mutagenesis and repair protein UmuD [Escherichia sp. 3_2_53FAA]
gi|301046821|ref|ZP_07193939.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
gi|306813923|ref|ZP_07448096.1| DNA polymerase V subunit UmuD [Escherichia coli NC101]
gi|26107897|gb|AAN80096.1|AE016759_370 UmuD protein [Escherichia coli CFT073]
gi|85376582|gb|ABC70509.1| UmuD [Escherichia coli]
gi|91071970|gb|ABE06851.1| UmuD protein [Escherichia coli UTI89]
gi|115512521|gb|ABJ00596.1| mutagenesis and repair protein UmuD [Escherichia coli APEC O1]
gi|218364876|emb|CAR02572.1| DNA polymerase V, subunit D [Escherichia coli S88]
gi|222032978|emb|CAP75718.1| Protein umuD [Escherichia coli LF82]
gi|226899895|gb|EEH86154.1| mutagenesis and repair protein UmuD [Escherichia sp. 3_2_53FAA]
gi|227836608|gb|EEJ47074.1| DNA polymerase V subunit UmuD [Escherichia coli 83972]
gi|294491049|gb|ADE89805.1| protein UmuD [Escherichia coli IHE3034]
gi|300301240|gb|EFJ57625.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
gi|305852560|gb|EFM53008.1| DNA polymerase V subunit UmuD [Escherichia coli NC101]
gi|307553233|gb|ADN46008.1| protein UmuD [Escherichia coli ABU 83972]
gi|307627299|gb|ADN71603.1| DNA polymerase V subunit UmuD [Escherichia coli UM146]
gi|312945809|gb|ADR26636.1| DNA polymerase V subunit UmuD [Escherichia coli O83:H1 str. NRG
857C]
gi|315288605|gb|EFU48003.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
gi|315290751|gb|EFU50123.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
gi|323187408|gb|EFZ72717.1| protein umuD [Escherichia coli RN587/1]
gi|323949706|gb|EGB45592.1| peptidase S24 [Escherichia coli H252]
gi|323953967|gb|EGB49766.1| peptidase S24 [Escherichia coli H263]
gi|324006037|gb|EGB75256.1| peptidase S24-like domain protein [Escherichia coli MS 57-2]
Length = 139
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLTPMNSAYSPITISSED 123
>gi|331672716|ref|ZP_08373502.1| protein UmuD [Escherichia coli TA280]
gi|331069937|gb|EGI41306.1| protein UmuD [Escherichia coli TA280]
Length = 139
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLILHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|315504932|ref|YP_004083819.1| transcriptional repressor, lexa family [Micromonospora sp. L5]
gi|315411551|gb|ADU09668.1| transcriptional repressor, LexA family [Micromonospora sp. L5]
Length = 250
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 16/121 (13%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
+PL+ +G + + + +P ++A+ +
Sbjct: 119 CPGVRVPLVGAIAAGV------PILAEEHVEEILALPSELVGRGTLFAL-------HVRG 165
Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM GD++++ + GD ++ + KV SR G+ ++L+ N YP
Sbjct: 166 DSMIEAGIADGDVIVVRQQVSAENGD-IVAALIDDEATVKVYRSRDGK-VELLPRNPLYP 223
Query: 204 V 204
V
Sbjct: 224 V 224
>gi|295111675|emb|CBL28425.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Synergistetes bacterium SGP1]
Length = 233
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 25/213 (11%)
Query: 16 MAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES-IFKILAATNETICQL 72
MA R + LA + G+ P + + + I R+ S +S I K L ++ L
Sbjct: 14 MARRKALGMKRPELAERLGVKPNTLYRYEIGSIGIRD---SMKSRIAKEL---GVSLAYL 67
Query: 73 LDLPFSDGR---------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
+ GR + +P+L GF S V KW E
Sbjct: 68 VSGTAEVGRERGSEETPEPVVPPQVYLPILDQEACAGSGFNWSDVRAGARKWMPWPTLET 127
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
P T+ K + SM+ + G ++++N +V GD ++ V
Sbjct: 128 GGPVG-----PTKPYFVKVEGDSMIGANIQDGCLILVNPNTEVRSGDIAYVRWNDRCSVK 182
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
++ GR ++L N + ++ ++E++
Sbjct: 183 GIIFYNDGR-VELRPANKDFSSIWIQRDEVEFL 214
>gi|294650866|ref|ZP_06728213.1| LexA family repressor [Acinetobacter haemolyticus ATCC 19194]
gi|292823284|gb|EFF82140.1| LexA family repressor [Acinetobacter haemolyticus ATCC 19194]
Length = 224
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 42/225 (18%)
Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW------P 53
M S H++I + +D NL + LAR +KR + + +W P
Sbjct: 1 MFVMSLHERIKQKLD----EKNLKAADLARA----------TKRSAVSAK-KWLDGVSVP 45
Query: 54 STESIFKILAATNETICQLL----DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
+ E++ I T LL + D + K + P+L + +G+ +
Sbjct: 46 TAENLKTIAKFLGVTDDWLLYGGKEQQTIDNNVSNKPARLAPVLSWVQAGTFTNVQAVDM 105
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVN 166
++W + +P+ K Q S P + +GD ++++ +
Sbjct: 106 SQVDEW--LPLPDEC----------INCFYLKVQGISNQPDFLEGDYILVDPDVYYSDMQ 153
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++++ D K L+ S + +LN + + + + +
Sbjct: 154 SGDMIVVRKFE-DATFKKLVIETDGSRYMQALNPNFQPNIIPLDE 197
>gi|293386435|ref|YP_003540597.1| UV protection protein [Erwinia amylovora ATCC 49946]
gi|291201078|emb|CBJ48216.1| UV protection protein [Erwinia amylovora ATCC 49946]
Length = 142
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + V ++ ++ + SM + GD+++++ ++
Sbjct: 26 AAGFPS-PAQDYVE--ASLDLNDLCIRHRSATYFVRASGDSMNDAGIKDGDLMVVDKSLT 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
GD ++I G+ KVL R + L +N +P E +E + W
Sbjct: 83 AEHGD-IVIAAVEGEFTVKVLQLRP--RLALQPMNPSFPTLFPEPDTLEIFGVVTW 135
>gi|227522664|ref|ZP_03952713.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus hilgardii ATCC 8290]
gi|227090184|gb|EEI25496.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus hilgardii ATCC 8290]
Length = 155
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G V R N + D K SM P + + ++ A + G +
Sbjct: 46 AGTGEELVD---ERDQINYRGELPKFDFAIKINGDSMEPRFHDQQVALVKKAFEAENG-Q 101
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
++I G K + ++ L+SLN Y V+
Sbjct: 102 IVIAYVDGRSYIKQF-EQTEQTCRLVSLNRKYAPIEVQ 138
>gi|328953857|ref|YP_004371191.1| SOS-response transcriptional repressor, LexA [Desulfobacca
acetoxidans DSM 11109]
gi|328454181|gb|AEB10010.1| SOS-response transcriptional repressor, LexA [Desulfobacca
acetoxidans DSM 11109]
Length = 202
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
E+P+L +G + + +T+ +P ++ + + SM
Sbjct: 77 EVPILGQIAAGQ------PLLASEQVEDTLPLPRSWVQGEEVFLL-------RVAGDSMA 123
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
PL GD++++ +V GD + V +V + L N +
Sbjct: 124 PLILPGDLVMVRVQPRVARGDIAAVLIYEEATVKRVYEE--AGGLVLRGDNPNFAPLRFS 181
Query: 209 MSDIEWIARIL 219
+ + +IL
Sbjct: 182 PEEAAELVQIL 192
>gi|312115168|ref|YP_004012764.1| peptidase S24/S26A/S26B, conserved region [Rhodomicrobium vannielii
ATCC 17100]
gi|311220297|gb|ADP71665.1| Peptidase S24/S26A/S26B, conserved region [Rhodomicrobium vannielii
ATCC 17100]
Length = 129
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAI 163
FP+ + + + + + SM L+ GDIL+++ AI
Sbjct: 11 PAGFPSPAD-DYLE--GELDLNKFLIRNPAATFYVRLSGDSMVMAGLF-DGDILVVDRAI 66
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PVDTVEMSDIE-W 214
+++ G++ K L S G I+L S N Y P+ VE ++ W
Sbjct: 67 SAR-HRHIVVAVVDGELTVKRLWS-SGGVIELRSENPAYQPIKMVEGRELVIW 117
>gi|281357484|ref|ZP_06243972.1| Peptidase S24/S26A/S26B [Victivallis vadensis ATCC BAA-548]
gi|281316087|gb|EFB00113.1| Peptidase S24/S26A/S26B [Victivallis vadensis ATCC BAA-548]
Length = 312
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
LP + IP++ + + G D P ++ PE +
Sbjct: 159 LPAGYFGDGAMLVRPIPVVSWANAA--GHLDLLANPDTRLFSRWD-PENTETVPAPVGTR 215
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGD----IVAKVLIS 187
+ SM P DI+++ + V ++ + G +V K L
Sbjct: 216 KGTQAFRVTGISMEPTIMDDDIILVEQRMSLDEVPNNKIVVARLTEGKFEDCVVCKRLRR 275
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ G L S N V VE SD++W+ ++
Sbjct: 276 QGGHCW-LTSDNPAGMVIPVEPSDLQWLGIVV 306
>gi|188994990|ref|YP_001929242.1| putative error-prone repair: SOS-response transcriptional repressor
UmuD homolog [Porphyromonas gingivalis ATCC 33277]
gi|188594670|dbj|BAG33645.1| putative error-prone repair: SOS-response transcriptional repressor
UmuD homolog [Porphyromonas gingivalis ATCC 33277]
Length = 141
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
LL F G FP+ + + + ++ + + + SM +
Sbjct: 14 LLPFADEGI-----RAGFPS-PAQDYMDI--AIDLNHELITHPYSTFYGRVKGNSMEDAH 65
Query: 152 R-KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
GDIL+++ +++ GD + + G+ K + + I L N YP V
Sbjct: 66 VFDGDILVIDKSLEARDGD-MAVCFLDGEFTLKTI-RIKSEEILLEPANPDYPTIHVSAD 123
Query: 211 D--IEW 214
+ + W
Sbjct: 124 NDFVIW 129
>gi|329298544|ref|ZP_08255880.1| DNA polymerase V subunit UmuD [Plautia stali symbiont]
Length = 98
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + SM R+GD+L+++S++ D ++I G+ K L +
Sbjct: 4 PSATYFVRVEGDSMRDANIREGDLLVVDSSLNAR-HDDIVIAAINGEFTVKRL--QTHPC 60
Query: 193 IDLMSLNCCYPV 204
+ LM +N Y
Sbjct: 61 VQLMPMNPRYQP 72
>gi|260425213|ref|ZP_05779194.1| putative phage repressor [Citreicella sp. SE45]
gi|260423785|gb|EEX17034.1| putative phage repressor [Citreicella sp. SE45]
Length = 228
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 46/213 (21%)
Query: 21 NLTPSGLARK------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
L+ + LA + +D ++ NK G+ R S E + +I T
Sbjct: 35 GLSQAALAERLDAVVPKNVDRSTINK----MTLGK-RAISAEELLRISEITG-------- 81
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+ +G+ FD+ +P G V P SPH G+ A+
Sbjct: 82 FDVPGEAPIRPTTA---IAGKVGAGAQVPVFDA--YPKGGG-PQVECPPGLSPH-GVVAV 134
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILN-------SAIQVNCGDRLLIKPRTGDIVAKVLI 186
+ + SM P+Y GD+L + G R +++ + G K +
Sbjct: 135 E-------VEGDSMEPVYSAGDLLFYTRDTHDGIPDDAI--GHRCIVEDQDGMGWVKQVK 185
Query: 187 S-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ L+SLN + ++W AR+
Sbjct: 186 AGEEPGLFHLISLNPGATN--MWNKRLKWAARV 216
>gi|256849525|ref|ZP_05554957.1| signal peptidase [Lactobacillus crispatus MV-1A-US]
gi|262046193|ref|ZP_06019156.1| signal peptidase I [Lactobacillus crispatus MV-3A-US]
gi|256713641|gb|EEU28630.1| signal peptidase [Lactobacillus crispatus MV-1A-US]
gi|260573523|gb|EEX30080.1| signal peptidase I [Lactobacillus crispatus MV-3A-US]
Length = 210
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P ++ GD LI Q+ G+ +++K G + K +I G I
Sbjct: 41 TVSGLSMQPTFQNGDRLIAERHAQIKRGEVVIVKAPDEPGALYIKRVIGLPGEKI 95
>gi|227878456|ref|ZP_03996396.1| possible signal peptidase I [Lactobacillus crispatus JV-V01]
gi|227861985|gb|EEJ69564.1| possible signal peptidase I [Lactobacillus crispatus JV-V01]
Length = 219
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P ++ GD LI Q+ G+ +++K G + K +I G I
Sbjct: 50 TVSGLSMQPTFQNGDRLIAERHAQIKRGEVVIVKAPDEPGALYIKRVIGLPGEKI 104
>gi|332092221|gb|EGI97298.1| protein umuD [Shigella boydii 5216-82]
Length = 139
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPS-PTADYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564]
gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564]
Length = 260
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQ 164
+ F G ++ I D K SM P Y+ GDIL +++ +
Sbjct: 139 ASGFNYGFGYDDTDRETIEVDERP----PRHDIATKVSGDSMQPDYQDGDILYLVDRGLT 194
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD +I K+ + L+SLN Y ++
Sbjct: 195 TYNGDLAVIAYGDRSYFKKIYTE--NGRLRLVSLNDKYEDIILD 236
>gi|228922414|ref|ZP_04085718.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837239|gb|EEM82576.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 223
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L +G T + IP++ +G+ + + +P
Sbjct: 69 LATQEGNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219
>gi|187476916|ref|YP_784940.1| phage repressor protein [Bordetella avium 197N]
gi|115421502|emb|CAJ48011.1| Putative phage repressor protein [Bordetella avium 197N]
Length = 317
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVL--ISRRGRSIDLMS 197
SM P+ R G L++ + D + G ++ K + GR + S
Sbjct: 219 GDSMEPIIRDGAALLVAIDQSLTLHDVAAGGVYAINYDGKMLVKTVAKDRLTGRWVA-RS 277
Query: 198 LNCCYPVDTVE-MSDIEWIARILWA 221
N +P +E + + R++WA
Sbjct: 278 FNAQHPDIPLEGNGLVRVLGRVVWA 302
>gi|34497787|ref|NP_902002.1| SOS mutagenesis [Chromobacterium violaceum ATCC 12472]
gi|34103643|gb|AAQ60004.1| SOS mutagenesis [Chromobacterium violaceum ATCC 12472]
Length = 198
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
K + SM GD+L++ + + G ++++ G++ K L
Sbjct: 106 PGDTFMVKVKGDSMQGAGIHDGDLLLVERSREPRSG-KVVVAALNGELTVKRLERGPAG- 163
Query: 193 IDLMSLNCCYPVDTVE 208
+ L+ N Y V
Sbjct: 164 VRLLPENPAYQPIDVP 179
>gi|295102328|emb|CBK99873.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Faecalibacterium prausnitzii L2-6]
Length = 208
Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 44/163 (26%), Gaps = 26/163 (15%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
E + L T + L DLP + +PL+ G+
Sbjct: 52 EELAAALDTTPAWLMGLADLPCPPPGFEPLPEMARVPLVGSIACGT-------------- 97
Query: 115 WNTVGVPEIRSPHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
P + Y A D +SM P GDI+ + +V G+
Sbjct: 98 ------PITAEQNIECYIGVPAAWHADFALTCHGSSMAPTICDGDIVCIRRQPEVEQGEI 151
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
++ + K + + L P +E
Sbjct: 152 AAVRIGE-EATLKHFHRQGETVMLLADNTAVCPPMVFAGPQLE 193
>gi|315925034|ref|ZP_07921251.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263]
gi|315621933|gb|EFV01897.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263]
Length = 219
Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
IP+L P + +G EI A + + TSM
Sbjct: 93 SIPVLGSV---------PAGVPVEAVEDIIGTIEIPRE---WLAGGAEFIGLRVTGTSMY 140
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
P+Y +GD +++ + G +I D K ++ +I L N +P T
Sbjct: 141 PMYLEGDTVVIEIKHDCDSGQDAIIYVNGYDATLKTVVKNDDGTITLKPRNPEWPTKTYG 200
Query: 209 MSD 211
D
Sbjct: 201 PGD 203
>gi|158520251|ref|YP_001528121.1| LexA family transcriptional regulator [Desulfococcus oleovorans
Hxd3]
gi|158509077|gb|ABW66044.1| transcriptional repressor, LexA family [Desulfococcus oleovorans
Hxd3]
Length = 210
Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 37/182 (20%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKE--------------------KEIPL 92
PS L+ ++ I Q L L G T +EIP+
Sbjct: 27 PSLRQAADALSVSHTAISQALKLLEKKGYITRHGRYSRDIHVLNPMNQSAGMHRWREIPV 86
Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS-PHNGIYAIQTQDTRHKTQDTSML-PL 150
+ +G + +W V + P + ++A+ + + SM
Sbjct: 87 IGAITAGLPMY-------AQQEWEGTLVLDRSCFPGDNLFAL-------RVKGDSMKDAA 132
Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
GD++I G+ ++ + K R I+L N Y +
Sbjct: 133 ILDGDLVICEPRQFAENGEIVVALVNGEEATVKRFFKR-QDHIELKPENPAYAPLKLMFG 191
Query: 211 DI 212
D+
Sbjct: 192 DV 193
>gi|315930676|gb|EFV09696.1| peptidase S24-like family protein [Campylobacter jejuni subsp.
jejuni 305]
Length = 222
Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G+ P +FN K + I L N +I
Sbjct: 25 DILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQ------ILNFLNQRNISINY 78
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + +I LY + GG G + + E+
Sbjct: 79 FFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDCSELIMDEKLLN 129
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 130 FFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 188
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 189 GVI-LHSLNPLYED 201
>gi|313116334|gb|ADR32142.1| phage repressor protein, putative [Campylobacter jejuni]
Length = 222
Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G+ P +FN K + I L N +I
Sbjct: 25 DILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQ------ILNFLNQRNISINY 78
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + +I LY + GG G + + E+
Sbjct: 79 FFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDCSELIMDEKLLN 129
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 130 FFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 188
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 189 GVI-LHSLNPLYED 201
>gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019]
gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019]
Length = 215
Score = 43.0 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 32/215 (14%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK---------RFGIEGRNRWPSTE 56
H+ I E I + E L+ + LA+ G S+ + +
Sbjct: 5 HEIIGERIKSLREAKGLSQAQLAKLCGWAA----PSRLGNYELGTRKVSADD-------- 52
Query: 57 SIFKIL-AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+L AA + + F + ++ E PL + G F T +
Sbjct: 53 --ALVLGAALGVSP---AKIMFGEDSDAVFRQYEYPLFSSVQA---GPFSEVGSYTASDA 104
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
VP + ++ + T + P + +G +++++ A V GD +
Sbjct: 105 KAW-VPTTTKASEKAFWLEVKGHSM-TAPQGVRPSFPEGMLILVDPAEPVESGDFCVASA 162
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
+ L+ LN Y + S
Sbjct: 163 NGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHS 197
>gi|193077634|gb|ABO12464.2| EsvI [Acinetobacter baumannii ATCC 17978]
Length = 229
Score = 43.0 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 22/163 (13%)
Query: 58 IFKILAATNETICQLLDLPFSDGRT------TEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
+ K + L T ++K K P+L + +G+ S
Sbjct: 55 LVKAAEFLGVSKDWLAGQSNKMDATKIDNNVSKKVAKLAPVLSWVQAGTFTNVQSVDLSM 114
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCG 168
+W + +P+ + K Q S P + +GD ++++ + G
Sbjct: 115 VEEW--LPLPDECT----------NCFYLKVQGVSNQPDFLEGDYILVDPDVYYSDMQSG 162
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D ++++ D K L+ S L +LN + + + + +
Sbjct: 163 DMVVVRRFE-DATFKKLVIETDGSRYLQALNPKFEPNIIPLDE 204
>gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a]
gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a]
Length = 215
Score = 43.0 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 32/215 (14%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK---------RFGIEGRNRWPSTE 56
H+ I E I + E L+ + LA+ G S+ + +
Sbjct: 5 HEIIGERIKSLREAKGLSQAQLAKLCGWAA----PSRLGNYELGTRKVSADD-------- 52
Query: 57 SIFKIL-AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+L AA + + F + ++ E PL + G F T +
Sbjct: 53 --ALVLGAALGVSP---AKIMFGEDSDAVFRQYEYPLFSSVQA---GPFSEVGSYTASDA 104
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
VP + ++ + T + P + +G +++++ A V GD +
Sbjct: 105 KAW-VPTTTKASEKAFWLEVKGHSM-TAPQGVRPSFPEGMLILVDPAEPVESGDFCVASA 162
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
+ L+ LN Y + +
Sbjct: 163 NGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHT 197
>gi|197105225|ref|YP_002130602.1| SOS-response transcriptional repressor, LexA [Phenylobacterium
zucineum HLK1]
gi|229621740|sp|B4RBX6|LEXA_PHEZH RecName: Full=LexA repressor
gi|196478645|gb|ACG78173.1| SOS-response transcriptional repressor, LexA [Phenylobacterium
zucineum HLK1]
Length = 229
Score = 43.0 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 15/140 (10%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
+E+P+L +G+ + + + + VPE + ++
Sbjct: 97 PVAANDTRELPILGKIAAGT------PIEAIQQERDRLPVPEAMLGAGEHFVLE------ 144
Query: 141 KTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
Q SM+ GD +++ N GD ++ + K L + SI L + N
Sbjct: 145 -IQGDSMINAGILDGDFVVIRRTDSANSGDIVVALVDGEEATLKRLRKKGA-SIALEAAN 202
Query: 200 CCYPVDTVEMSDIEWIARIL 219
Y + R++
Sbjct: 203 PAYETRIFGPDRVAVQGRLV 222
>gi|332702887|ref|ZP_08422975.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay]
gi|332553036|gb|EGJ50080.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay]
Length = 247
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 135 TQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+Q + SM P R GD +L+ S +V G ++ G +V K L R G+ +
Sbjct: 153 SQMCLMRVAGDSMEPTLRDGDAVLLDQSQTEVVYGKIYVVGIDEG-VVVKRLDKRPGKLV 211
Query: 194 DLMSLNCC-YPVDTVEMSD---IEWIARILW 220
L+S N YP V +++ + + R++W
Sbjct: 212 -LVSDNRQVYPPLEVALNESVSVRIVGRVIW 241
>gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family
[Jonquetella anthropi E3_33 E1]
gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family
[Jonquetella anthropi E3_33 E1]
Length = 247
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGG---FF----DSGVF----PTG 112
T + + P + +PLL + GG FF DS F P
Sbjct: 82 TAASDNEAASYPNDPRVIPLTNCRRVPLLSPEATAHCGGGCSFFEITSDSTEFIICTP-- 139
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
+ +G P +A+ ++ ++ S GD L++N A++V + +
Sbjct: 140 ---DELGSP--IDDLRPPFAVSSEGNCLQSSGIS------DGDKLVVNPAVEVRDFNVCV 188
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
I R + AK + + I+L S N V V D+E
Sbjct: 189 ICWRDH-LSAKRIRKLQNGDIELRSDNG---VAVVPADDVE 225
>gi|239907530|ref|YP_002954271.1| UmuD protein [Desulfovibrio magneticus RS-1]
gi|239797396|dbj|BAH76385.1| UmuD protein [Desulfovibrio magneticus RS-1]
Length = 143
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK-----GDILILN 160
FP+ + + + + + + SM R GDIL+++
Sbjct: 27 PAGFPS-PAEDYID--KKIDLNEHLVRHPAATFFVRVDGDSM----RDAGVASGDILVVD 79
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEW 214
A++ G +++ G++ K L R G+ + L+ N Y V + W
Sbjct: 80 RALEAKDGS-IVVAALDGELTVKRLRRRDGKLL-LVPENPDYQAVEVAPEASFMVW 133
>gi|114569948|ref|YP_756628.1| LexA repressor [Maricaulis maris MCS10]
gi|122316090|sp|Q0APU7|LEXA_MARMM RecName: Full=LexA repressor
gi|114340410|gb|ABI65690.1| SOS-response transcriptional repressor, LexA [Maricaulis maris
MCS10]
Length = 232
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 106 SGVFPTGNKWNTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAI 163
+ P + P G + + + SM GD +++
Sbjct: 116 AAGVPISAIQHETDRFPVPADMVMG-----GEHFGLEVKGDSMIEAGIMDGDTVLIRRCQ 170
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
GD ++ + K L ++G S+ L + N Y ++ R++
Sbjct: 171 SAETGDIVVALIDDEEATLKRL-RKKGGSVALEAANPEYETRIFPPDRVKVQGRLV 225
>gi|15596103|ref|NP_249597.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
gi|107100364|ref|ZP_01364282.1| hypothetical protein PaerPA_01001389 [Pseudomonas aeruginosa PACS2]
gi|116048830|ref|YP_792370.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893125|ref|YP_002441994.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
gi|254239258|ref|ZP_04932581.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719]
gi|296390740|ref|ZP_06880215.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
gi|313105790|ref|ZP_07792053.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
gi|9946808|gb|AAG04295.1|AE004525_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
gi|115584051|gb|ABJ10066.1| probable transcriptional regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126171189|gb|EAZ56700.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719]
gi|218773353|emb|CAW29165.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
gi|310878555|gb|EFQ37149.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
Length = 237
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
SM P+ G + ++++ + GD + G + K+L G
Sbjct: 141 PASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGD-MYAFDHDGQLRVKLLYRLPGGG 199
Query: 193 IDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
+ + S N +P + E + I I R+ W S
Sbjct: 200 LRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234
>gi|126642082|ref|YP_001085066.1| EsvI [Acinetobacter baumannii ATCC 17978]
Length = 154
Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
T K Q S P + +GD ++++ + GD ++++ D K L+
Sbjct: 51 TNCFYLKVQGVSNQPDFLEGDYILVDPDVYYSDMQSGDMVVVRRFE-DATFKKLVIETDG 109
Query: 192 SIDLMSLNCCYPVDTVEMSD 211
S L +LN + + + + +
Sbjct: 110 SRYLQALNPKFEPNIIPLDE 129
>gi|49081996|gb|AAT50398.1| PA0906 [synthetic construct]
Length = 238
Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
SM P+ G + ++++ + GD + G + K+L G
Sbjct: 141 PASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGD-MYAFDHDGQLRVKLLYRLPGGG 199
Query: 193 IDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
+ + S N +P + E + I I R+ W S
Sbjct: 200 LRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234
>gi|294784043|ref|ZP_06749365.1| LexA repressor [Fusobacterium sp. 1_1_41FAA]
gi|294479855|gb|EFG27634.1| LexA repressor [Fusobacterium sp. 1_1_41FAA]
Length = 219
Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 111 TGNKWNTVGVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNC 167
G + + P+ P G +++ + SM P G+ +++ V
Sbjct: 99 AGRGYLNMDKPDYYMPITKGDFSL--NSFFVEITGDSMEPTLEDGEYALVDPNNTAYVKN 156
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
++ G I L ++ + I L S N Y +
Sbjct: 157 KIYVVTYNDEGYIKRVELKEKK-KVITLKSDNPDYDDIDIPEE 198
>gi|240141185|ref|YP_002965665.1| putative phage repressor [Methylobacterium extorquens AM1]
gi|240011162|gb|ACS42388.1| putative phage repressor [Methylobacterium extorquens AM1]
Length = 212
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT------GDIVAKVLISRRGRSIDLMS 197
S+ P Y G + ++ + D ++++ R G K L+SR G + L
Sbjct: 123 GDSVAPAYEDGSPIYVDPHRRPAPRDYVVVELRGEREGEPGPAFVKRLVSRGGGKLRLEQ 182
Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
N ++ ++ +D+ + R++
Sbjct: 183 HNPPKQLEPIDEADVVRVHRVI 204
>gi|238918201|ref|YP_002931715.1| LexA repressor [Edwardsiella ictaluri 93-146]
gi|259494473|sp|C5B718|LEXA_EDWI9 RecName: Full=LexA repressor
gi|238867769|gb|ACR67480.1| repressor LexA, putative [Edwardsiella ictaluri 93-146]
Length = 202
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 105 DSGVFP-TGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGD 155
D P G G P + H G Y I D + SM + GD
Sbjct: 72 DETGLPLVGQV--AAGEPLLAQQHIEGFYQIDPSLFKPGADFLLRVNGMSMRDIGILDGD 129
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+L ++ V G ++++ ++ K L + G + L+ NC + V++ +
Sbjct: 130 LLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNMVQLLPENCDFQPIVVDLRE 183
>gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein)
[Burkholderia multivorans CGD1]
gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein)
[Burkholderia multivorans CGD1]
Length = 257
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 109 FPTGNK---WNTVGVPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSA 162
F G W + A+ + SM P D++++++A
Sbjct: 126 FSAGTGLIQWEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTA 185
Query: 163 -IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE 213
+ G ++ G+ + K + + G SI L S+N YP V +E
Sbjct: 186 KTHIRDG-KVYAIYFEGEPLVKQIFKQAGGSICLHSINSGKYPDKIVTPELME 237
>gi|121634351|ref|YP_974596.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
gi|120866057|emb|CAM09795.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
gi|325131771|gb|EGC54472.1| putative transcriptional regulator [Neisseria meningitidis M6190]
gi|325137661|gb|EGC60238.1| putative transcriptional regulator [Neisseria meningitidis ES14902]
Length = 228
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 95
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 96 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRNTKNLSVISVKGDSMEGVLNDGD 155
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP----VDTVEMSD 211
+++N + D L + +++ K L G I+++S N YP D
Sbjct: 156 SILVNHSENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNHPADD 214
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 215 VEIIGRVEW 223
>gi|15678595|ref|NP_275710.1| hypothetical protein MTH567 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2621644|gb|AAB85073.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 206
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + SM P + G LI+ + GD ++ + ++ K +
Sbjct: 101 ESQFGVDQLPMPAVVSGDSMYPTLKDGQDLIVLKTDRYTVGDIVIARHPEYGLIVKRVGK 160
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIE------WIAR 217
+ LMS N S I W+ R
Sbjct: 161 IEPERVYLMSDNKKVERIYTPTSVIVRTPLNTWVPR 196
>gi|262066050|ref|ZP_06025662.1| LexA repressor [Fusobacterium periodonticum ATCC 33693]
gi|291380300|gb|EFE87818.1| LexA repressor [Fusobacterium periodonticum ATCC 33693]
Length = 219
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 111 TGNKWNTVGVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNC 167
G + + P+ P G +++ + SM P G+ +++ V
Sbjct: 99 AGRGYLNMDKPDYYMPITKGDFSL--NSFFVEITGNSMEPTLEDGEYALVDPNNTAYVKN 156
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
++ G I L ++ ++I L S N Y +
Sbjct: 157 KIYVVTYNDEGYIKRVELKEKK-KTITLKSDNPDYDDIDIPEE 198
>gi|218689126|ref|YP_002397338.1| DNA polymerase V subunit UmuD [Escherichia coli ED1a]
gi|312966417|ref|ZP_07780639.1| UmuD protein [Escherichia coli 2362-75]
gi|331646495|ref|ZP_08347598.1| protein UmuD [Escherichia coli M605]
gi|218426690|emb|CAR07525.1| DNA polymerase V, subunit D [Escherichia coli ED1a]
gi|281178338|dbj|BAI54668.1| mutagenesis and repair protein UmuD [Escherichia coli SE15]
gi|312288870|gb|EFR16768.1| UmuD protein [Escherichia coli 2362-75]
gi|315296574|gb|EFU55869.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
gi|330911045|gb|EGH39555.1| error-prone repair protein UmuD [Escherichia coli AA86]
gi|331045247|gb|EGI17374.1| protein UmuD [Escherichia coli M605]
Length = 139
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IIIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|149204799|ref|ZP_01881762.1| LexA repressor [Roseovarius sp. TM1035]
gi|149141768|gb|EDM29821.1| LexA repressor [Roseovarius sp. TM1035]
Length = 233
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM GD++I+ + GD ++ + K R G +I
Sbjct: 143 ANHYALEVRGDSMIEAGINDGDVVIIRETSVADNGDIVVALIEDQEATLKRFYRR-GNAI 201
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + R++
Sbjct: 202 ALEAANPAYETRLFPEDQVRVQGRLV 227
>gi|117926057|ref|YP_866674.1| phage repressor [Magnetococcus sp. MC-1]
gi|117609813|gb|ABK45268.1| putative phage repressor [Magnetococcus sp. MC-1]
Length = 264
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+TQ SM P + GD+L+L+ + ++ + + K L GR I ++S N
Sbjct: 177 IQTQGDSMYPTFDDGDVLLLDMGQREVVDGKVFVLRSEEYLYVKRLQILPGR-ILIVSDN 235
Query: 200 CCYPVDTVEMSDIE-W--IARILWA 221
Y V + E W + R++W
Sbjct: 236 PKYQSVQVTREERELWKIVGRVVWV 260
>gi|238912035|ref|ZP_04655872.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 139
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + + + + + K SM+ GD+L+++S+
Sbjct: 23 PCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKATGDSMIDAGINDGDLLVVDSSRT 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L +N Y V D
Sbjct: 80 AEHGD-IVIAAVDGEFTVKRLQLRP--TVQLNPMNSAYSPIIVGSED 123
>gi|200389474|ref|ZP_03216085.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|199601919|gb|EDZ00465.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
Length = 158
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + + + + + K SM+ GD+L+++S+
Sbjct: 42 PCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKATGDSMIDAGINDGDLLVVDSSRT 98
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L +N Y V D
Sbjct: 99 AEHGD-IVIAAVDGEFTVKRLQLRP--TVQLNPMNSAYSPIIVGSED 142
>gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai]
gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai]
gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str.
Sakai]
gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str. 1044]
Length = 212
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 32/215 (14%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK---------RFGIEGRNRWPSTE 56
H+ I E I + E L+ + LA+ G S+ + +
Sbjct: 2 HEIIGERIKSLREAKGLSQAQLAKLCGWAA----PSRLGNYELGTRKVSADD-------- 49
Query: 57 SIFKIL-AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
+L AA + + F + ++ E PL + G F T +
Sbjct: 50 --ALVLGAALGVSP---AKIMFGEDSDAVFRQYEYPLFSSVQA---GPFSEVGSYTASDA 101
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
VP + ++ + T + P + +G +++++ A V GD +
Sbjct: 102 KAW-VPTTTKASEKAFWLEVKGHSM-TAPQGVRPSFPEGMLILVDPAEPVESGDFCVASA 159
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
+ L+ LN Y + S
Sbjct: 160 NGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHS 194
>gi|85058915|ref|YP_454617.1| hypothetical protein SG0937 [Sodalis glossinidius str. 'morsitans']
gi|84779435|dbj|BAE74212.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
Length = 236
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 140 HKTQDTSMLPLYRKG-DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
T SM P G + I + V+ GD + G K L R I + S
Sbjct: 150 FTTHGNSMEPFIPDGTCVAIDCNNKHVHDGD-VYAININGLKRIKQLYMRPKGKIVVRSF 208
Query: 199 NC-CYPVDTVEMSDIEWIARILWAS 222
N YP + + +++ I R+ W S
Sbjct: 209 NRLEYPDEEFDEQEVDIIGRLFWTS 233
>gi|309776822|ref|ZP_07671796.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53]
gi|308915570|gb|EFP61336.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53]
Length = 194
Score = 42.6 bits (99), Expect = 0.040, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
RW S ES + A + + +L + + K P+L + +G F + +
Sbjct: 33 KRWESGES-SNVSQARLDKLSELFGIDVNACLQGNVK----PILGYVKAGYDLFANENLL 87
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCG 168
+ V E D + Q SM GD++ + S V G
Sbjct: 88 ----GYEEVTGKEAA----------QGDYYLRVQGDSMTGSRIYDGDLVYVKSCSDVESG 133
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
++ ++ K ++ + I LM+ N +IE
Sbjct: 134 AIAVVLLEYNEVTIKKILKKENTVI-LMATNPTVEPRVFTRQEIE 177
>gi|167553752|ref|ZP_02347498.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205321891|gb|EDZ09730.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 139
Score = 42.6 bits (99), Expect = 0.040, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + + + + + K SM+ GD+L+++S+
Sbjct: 23 PCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKATGDSMIDAGINDGDLLVVDSSRT 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L +N Y V D
Sbjct: 80 AEHGD-IVIAAVDGEFTVKRLQLRP--TVQLNPMNSAYSPIIVGSED 123
>gi|15927573|ref|NP_375106.1| hypothetical protein SA1805 [Staphylococcus aureus subsp. aureus
N315]
gi|29028622|ref|NP_803311.1| cI-like repressor [Staphylococcus phage phi 12]
gi|30043985|ref|NP_835522.1| similar to repressor [Staphylococcus phage phiN315]
gi|49484242|ref|YP_041466.1| repressor [Staphylococcus aureus subsp. aureus MRSA252]
gi|87160268|ref|YP_494620.1| phi77 ORF011-like protein, phage transcriptional repressor
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88195287|ref|YP_500091.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|118725059|ref|YP_908795.1| putative repressor [Staphylococcus phage phiNM3]
gi|151222133|ref|YP_001332955.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161510223|ref|YP_001575882.1| transcription regulator [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253315033|ref|ZP_04838246.1| phi77 ORF011-like protein, phage transcriptional repressor
[Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|253729783|ref|ZP_04863948.1| bifunctional S24 family peptidase/transcriptional regulator
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|258413673|ref|ZP_05681947.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258425108|ref|ZP_05687978.1| transcription regulator [Staphylococcus aureus A9635]
gi|258434317|ref|ZP_05688718.1| transcription regulator [Staphylococcus aureus A9299]
gi|258447839|ref|ZP_05695974.1| transcription regulator [Staphylococcus aureus A6224]
gi|258452360|ref|ZP_05700370.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|282917348|ref|ZP_06325103.1| repressor [Staphylococcus aureus subsp. aureus D139]
gi|282928797|ref|ZP_06336390.1| repressor [Staphylococcus aureus A10102]
gi|283771163|ref|ZP_06344054.1| transcription regulator [Staphylococcus aureus subsp. aureus H19]
gi|294849551|ref|ZP_06790293.1| repressor [Staphylococcus aureus A9754]
gi|295428581|ref|ZP_06821208.1| repressor [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297589944|ref|ZP_06948584.1| bifunctional S24 family peptidase/transcriptional regulator
[Staphylococcus aureus subsp. aureus MN8]
gi|13701792|dbj|BAB43085.1| SA1805 [Staphylococcus aureus subsp. aureus N315]
gi|18920546|gb|AAL82286.1| cI-like repressor [Staphylococcus phage phi 12]
gi|49242371|emb|CAG41083.1| putative repressor [Staphylococcus aureus subsp. aureus MRSA252]
gi|87126242|gb|ABD20756.1| phi77 ORF011-like protein, phage transcriptional repressor
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87202845|gb|ABD30655.1| Helix-turn-helix domain protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|104641824|gb|ABF73166.1| putative repressor [Staphylococcus phage phiNM3]
gi|150374933|dbj|BAF68193.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160369032|gb|ABX30003.1| possible bifunctional S24 family peptidase/transcriptional
regulator [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253726518|gb|EES95247.1| bifunctional S24 family peptidase/transcriptional regulator
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|257839626|gb|EEV64096.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257844691|gb|EEV68735.1| transcription regulator [Staphylococcus aureus A9635]
gi|257849265|gb|EEV73246.1| transcription regulator [Staphylococcus aureus A9299]
gi|257858936|gb|EEV81804.1| transcription regulator [Staphylococcus aureus A6224]
gi|257859947|gb|EEV82785.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|269941472|emb|CBI49869.1| putative phage repressor protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282318975|gb|EFB49330.1| repressor [Staphylococcus aureus subsp. aureus D139]
gi|282589532|gb|EFB94620.1| repressor [Staphylococcus aureus A10102]
gi|283459757|gb|EFC06848.1| transcription regulator [Staphylococcus aureus subsp. aureus H19]
gi|285817683|gb|ADC38170.1| CI-like repressor, phage associated [Staphylococcus phage phiN315]
gi|294823688|gb|EFG40115.1| repressor [Staphylococcus aureus A9754]
gi|295127563|gb|EFG57202.1| repressor [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577072|gb|EFH95786.1| bifunctional S24 family peptidase/transcriptional regulator
[Staphylococcus aureus subsp. aureus MN8]
gi|312830369|emb|CBX35211.1| helix-turn-helix family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315196785|gb|EFU27130.1| possible bifunctional S24 family peptidase/transcriptional
regulator [Staphylococcus aureus subsp. aureus CGS01]
gi|320143662|gb|EFW35440.1| peptidase S24-like domain protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329724424|gb|EGG60934.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus
21189]
Length = 237
Score = 42.6 bits (99), Expect = 0.040, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
I T D K SM P+++ G+I+ + + G + V KV +
Sbjct: 151 IPTHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVED--DR 208
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y ++
Sbjct: 209 LTLVSLNKDYDDLHFYRNE 227
>gi|307721127|ref|YP_003892267.1| phage repressor [Sulfurimonas autotrophica DSM 16294]
gi|306979220|gb|ADN09255.1| putative phage repressor [Sulfurimonas autotrophica DSM 16294]
Length = 219
Score = 42.6 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 9/125 (7%)
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-------HKTQDTSMLPLYRKGD 155
+F G + + R SM P + D
Sbjct: 89 YFSDVNASAGGGSDIECEEIEELEIPEQFVFMLGGERELQNIEAINVSGDSMEPTFSYND 148
Query: 156 ILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
I+ +N + +N G I+ G + K + R +D++S N Y T++ + +E
Sbjct: 149 IVFINRSKTDINRGGIFTIRTEAG-LFIKRVQKRIDGKLDVISDNSIYNTQTLDANQVEV 207
Query: 215 IARIL 219
I R++
Sbjct: 208 IGRVV 212
>gi|66395676|ref|YP_240035.1| ORF020 [Staphylococcus phage 47]
gi|209363558|ref|YP_002267976.1| probable transcriptional repressor [Staphylococcus phage
phi2958PVL]
gi|257428267|ref|ZP_05604665.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
65-1322]
gi|282905891|ref|ZP_06313746.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282919258|ref|ZP_06326993.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
C427]
gi|284024543|ref|ZP_06378941.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 132]
gi|62636100|gb|AAX91211.1| ORF020 [Staphylococcus phage 47]
gi|208973059|dbj|BAG74375.1| probable transcriptional repressor [Staphylococcus phage
phi2958PVL]
gi|257275108|gb|EEV06595.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
65-1322]
gi|282317068|gb|EFB47442.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
C427]
gi|282331183|gb|EFB60697.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
Btn1260]
Length = 204
Score = 42.6 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 59/168 (35%), Gaps = 15/168 (8%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
I K+ A + ++ + + K+IP++ S P + N
Sbjct: 46 IVKLAKALRVSPSYIMGIEDEKPQLETIPVKKIPVVSKI---------SAGMPIYTEENL 96
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ + + ++ + SM L++ GD++++ V G ++
Sbjct: 97 IDYIYFATKNLNS---NKEEFGLQVSGDSMDKLFQDGDVVVVEKDSTVENGQLGVVLVNG 153
Query: 178 GDIVAKVLISRRGRSIDL-MSLNCCYPVDTVEM-SDIEWIARILWASQ 223
+ K + + I + S N + +++ + R++ ASQ
Sbjct: 154 YNGTVKRIRYNNDQIILIPESNNPSHYPQVYGKDDEVKIVGRVV-ASQ 200
>gi|294506195|ref|YP_003570253.1| umuD protein [Salinibacter ruber M8]
gi|294342523|emb|CBH23301.1| umuD protein [Salinibacter ruber M8]
Length = 194
Score = 42.6 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + + TSM GDIL+++ A++
Sbjct: 77 EAGFPSPAS-DYVE--TELDLAEHLIEHEAATYYLRVSGTSMTRAGIHDGDILVVDRAVE 133
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
GD +++ ++ K L +R GR+
Sbjct: 134 PADGD-VVVAALDAELTVKRLRTRDGRAF 161
>gi|317505686|ref|ZP_07963583.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315663200|gb|EFV02970.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 226
Score = 42.6 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
F + K+K IPL+ FP+ + + V + + + +
Sbjct: 83 FGGSAKSSNKQKGIPLIPIDAV--------AGFPSDDN-DGVYMEDCEHYSIPEFEAKGA 133
Query: 137 DTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAK-VLISRRGRS 192
+ + SM PLY GDI+ ++ + G ++ G +V + S
Sbjct: 134 NFLIRVSGDSMHPLYENGDIIACRKISDILFFQWGGIYVLDTSQGALVKRVEEAEDDKES 193
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I +S N + + SDI ++ I+
Sbjct: 194 ILCISENPRFKPFRLPKSDIRSLSTIV 220
>gi|296445564|ref|ZP_06887520.1| putative phage repressor [Methylosinus trichosporium OB3b]
gi|296256969|gb|EFH04040.1| putative phage repressor [Methylosinus trichosporium OB3b]
Length = 230
Score = 42.6 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 9/174 (5%)
Query: 54 STESIFKILAATNETICQLL----DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
S E + +I ++ L+ F + P S
Sbjct: 54 SAEKLGRIAEVAGVSLDWLVLDRGAPVFEQEGEPPPLPAGPDMAMIPHSHVRPRVAEPAD 113
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
+ P G+ A + + R SM P G +++++ + GD
Sbjct: 114 SRSALVEKLPFPRALLRRLGLGAGEVEFVRAV--GDSMEPTIDDGALVLIDRTRKEIAGD 171
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RILW 220
+ + G+ + + SI L+S N Y + V D+E +A R W
Sbjct: 172 AIYLVTLDGEARLERVRRNIDGSILLISDNRRYDPEHVRRQDVERLAVHGRACW 225
>gi|330954045|gb|EGH54305.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7]
Length = 143
Score = 42.6 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + I A SM GD+ I++ +++
Sbjct: 24 SAGFPSPAA-DHIEKHISLDELFSIRA--PHVYLVTVLGESMQGAGIHSGDLAIVDRSLE 80
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD +++ + V K L R + + L S N + + D
Sbjct: 81 AEHGD-IVVAALNAEAVCKRLHMRN-KVVILQSENPHFAPRHIMEGD 125
>gi|256827991|ref|YP_003156719.1| peptidase S24 and S26 domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256577167|gb|ACU88303.1| peptidase S24 and S26 domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 153
Score = 42.6 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEIRSP 126
+ LL L E + + P G+ + D S FP+ + +
Sbjct: 1 MSNLLQLSTPSRERLEILGRAV---SEPRHGTPLYLDRISAGFPSPAD-DYIE--TALDL 54
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+ + + SM GD+L+++ + Q G ++++ G++ K L
Sbjct: 55 NTYLIRNPAATFMVRVSGDSMTGAGISDGDVLVVDRSEQPAHG-KIVVAVLDGELTVKRL 113
Query: 186 ISRRGRSIDLMSLNCCYPVDTV 207
+ + G+++ L N CY TV
Sbjct: 114 VMKNGQTL-LAPENPCYQPITV 134
>gi|86138839|ref|ZP_01057411.1| LexA repressor [Roseobacter sp. MED193]
gi|85824486|gb|EAQ44689.1| LexA repressor [Roseobacter sp. MED193]
Length = 238
Score = 42.6 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 15/154 (9%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPT---GNKWNTVGVPE-IRSP 126
+ P + + P + + +P+ + S
Sbjct: 87 AGAFSPASARPPSTPRSTPAASVLAALEIPVMGRIAAGVPIEAINQITHQIAIPQTMLSS 146
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+ YA++ + SM+ GDI+++ + GD ++ + K L
Sbjct: 147 NGKHYALE-------VRGDSMINAGINDGDIVVIRETDTADDGDIVVALIADEEATLKRL 199
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
R G +I L + N Y + + ++ R++
Sbjct: 200 FRRNG-AIALEAENPAYETRVLSPNQVKVQGRLV 232
>gi|152990029|ref|YP_001355751.1| phage repressor protein [Nitratiruptor sp. SB155-2]
gi|151421890|dbj|BAF69394.1| phage repressor protein [Nitratiruptor sp. SB155-2]
Length = 219
Score = 42.6 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 144 DTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P + G IL ++ S + V G L+ G + K + R ++++S N Y
Sbjct: 137 GDSMEPTLKDGSILFVDRSELDVKKGGIFLLSTLMG-LFVKRVRLRLDGKLEMISDNPSY 195
Query: 203 PVDTVEMSDIEWIARIL 219
PV+ V+ +++ + +++
Sbjct: 196 PVEVVQGDEVQVVGKVV 212
>gi|321157034|emb|CBW39022.1| Putative phage repressor protein [Streptococcus phage 040922]
Length = 263
Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVN 166
F G ++ I D K SM P Y+ GDIL +++ +
Sbjct: 147 GFNYGFGYDDTDRETIEVDERP----PRHDIATKVSGDSMQPDYQDGDILYLVDKGLTTY 202
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD +I K+ + L+SLN Y ++
Sbjct: 203 NGDLAVIAYGDRSYFKKIYTE--NGRLRLVSLNDKYEDIILD 242
>gi|149012706|ref|ZP_01833682.1| phage transcriptional repressor [Streptococcus pneumoniae
SP19-BS75]
gi|147763306|gb|EDK70244.1| phage transcriptional repressor [Streptococcus pneumoniae
SP19-BS75]
Length = 263
Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVN 166
F G ++ I D K SM P Y+ GDIL +++ +
Sbjct: 147 GFNYGFGYDDTDRETIEVDERP----PRHDIATKVSGDSMQPDYQDGDILYLVDKGLTTY 202
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD +I K+ + L+SLN Y ++
Sbjct: 203 NGDLAVIAYGDRSYFKKIYTE--NGRLRLVSLNDKYEDIILD 242
>gi|303257549|ref|ZP_07343561.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
gi|302859519|gb|EFL82598.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
Length = 227
Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
R K + SM PL D++++ S ++ G R+ + K L + S
Sbjct: 133 PEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDG-RIYAFVFGDALRVKRLYRKIDGS 191
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
I + S N +P +T+ +D E
Sbjct: 192 IMVHSENPNFPDETISPADTE 212
>gi|92113491|ref|YP_573419.1| putative phage repressor [Chromohalobacter salexigens DSM 3043]
gi|91796581|gb|ABE58720.1| putative phage repressor [Chromohalobacter salexigens DSM 3043]
Length = 227
Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 20/209 (9%)
Query: 18 ERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKILAATNETIC-QLLDL 75
+R L+ + A AG+ T+ N K R P TE + L + + L
Sbjct: 21 KRLGLSQTAFANLAGVGKTTQINYEKGT------RNPDTEYLA-ALDSAGVDVYYVLTGR 73
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
S G + + E PL + P + G + + +
Sbjct: 74 KSSGGSSDVQAPVEEPLDGYSPVPMYDIEAAAG--AGRLIEHENIESTLYFQTQALSAEG 131
Query: 136 QDTRHKTQ----DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
D H SM + GD +I++ D + + + K + G
Sbjct: 132 LDPAHLIGAKVRGDSMGSTLQDGDRVIVD--CSQRTPDGVFLLRVGEEYRIKRVQRVAGG 189
Query: 192 SIDLMSLNCCYPVDTV---EMSDIEWIAR 217
+ L+S N Y + + EM D+E + R
Sbjct: 190 AWLLISDNHAYEKEMIKPDEMQDVEILGR 218
>gi|86149224|ref|ZP_01067456.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85840582|gb|EAQ57839.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni CF93-6]
Length = 209
Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G+ P +FN K + I L N +I
Sbjct: 12 DILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQ------ILNFLNQRNISINY 65
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + +I LY + GG G + + E+
Sbjct: 66 FFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDCSELIVDEKLLN 116
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 117 FFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 175
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 176 GVI-LHSLNPLYKD 188
>gi|323669712|emb|CBJ94835.1| UV protection protein [Salmonella bongori]
Length = 140
Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 106 SGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--DTSMLPL-YRKGDILIL 159
+ FP+ + + Y I+ + + SM + GD++++
Sbjct: 24 AAGFPSPAADYTEEELDL--------NAYCIRRPSSTFFVRAIGDSMRDMGLHSGDLMVV 75
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+ A + GD ++I G+ K L + I L+ +N YPV
Sbjct: 76 DKAEKPLQGD-IVIAETEGEFTVKRLQLKP--RIALLPMNPAYPV 117
>gi|331682667|ref|ZP_08383286.1| protein UmuD [Escherichia coli H299]
gi|331080298|gb|EGI51477.1| protein UmuD [Escherichia coli H299]
Length = 139
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y + D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPIIISSED 123
>gi|260867589|ref|YP_003233991.1| DNA polymerase V subunit D [Escherichia coli O111:H- str. 11128]
gi|257763945|dbj|BAI35440.1| DNA polymerase V subunit D [Escherichia coli O111:H- str. 11128]
gi|323179304|gb|EFZ64874.1| protein umuD [Escherichia coli 1180]
Length = 139
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSSITISSED 123
>gi|310287284|ref|YP_003938542.1| peptidase S24-like domain [Bifidobacterium bifidum S17]
gi|309251220|gb|ADO52968.1| Conserved hypothetical protein with peptidase S24-like domain
[Bifidobacterium bifidum S17]
Length = 131
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-------KTQDTSMLP--LYRKGDI 156
+ FP+ P + G +++ H SM ++ GD
Sbjct: 9 AAGFPS---------PALDGREEG-FSLDAHVIEHPEYTFIVTVAGDSMEGAGIFH-GDW 57
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
L+++ ++ GD +++ G++ K L+SR GR + L + N YP
Sbjct: 58 LVVDRSLTPEDGD-VVVAVLDGELTVKRLLSRDGRPM-LHAENPRYPD 103
>gi|254480410|ref|ZP_05093657.1| LexA repressor [marine gamma proteobacterium HTCC2148]
gi|214038993|gb|EEB79653.1| LexA repressor [marine gamma proteobacterium HTCC2148]
Length = 200
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ P + N ++ A D + SM+ + GD+L ++S
Sbjct: 81 AAGNPVLAEENIEDYCDLPPEFFKPRA----DYFLRVTGDSMIDIGIFDGDLLAVHSTPV 136
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211
N GD +++ ++ K L + L+ N Y V++ +
Sbjct: 137 ANNGD-VVVARIEDEVTVKRLQKGPNEHQLQLLPENPDYQPIKVDLRE 183
>gi|153000861|ref|YP_001366542.1| putative prophage repressor [Shewanella baltica OS185]
gi|160875569|ref|YP_001554885.1| peptidase S24/S26 domain-containing protein [Shewanella baltica
OS195]
gi|151365479|gb|ABS08479.1| putative prophage repressor [Shewanella baltica OS185]
gi|160861091|gb|ABX49625.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195]
gi|315267756|gb|ADT94609.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
OS678]
Length = 139
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
+ FP+ + V + + K Q SM GDIL+++ ++Q
Sbjct: 23 AAGFPS-PAQDYVE--QTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQ 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
GD ++ G+ K L R + L+ N + +
Sbjct: 80 PAHGDTVVAAV-NGEFTVKQLQLRPV--VQLLPRNALFSPIAI 119
>gi|126174565|ref|YP_001050714.1| putative prophage repressor [Shewanella baltica OS155]
gi|217973182|ref|YP_002357933.1| peptidase S24 and S26 domain-containing protein [Shewanella baltica
OS223]
gi|304408934|ref|ZP_07390555.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
OS183]
gi|307302937|ref|ZP_07582692.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
BA175]
gi|125997770|gb|ABN61845.1| UmuD protein. Serine peptidase. MEROPS family S24 [Shewanella
baltica OS155]
gi|217498317|gb|ACK46510.1| peptidase S24 and S26 domain protein [Shewanella baltica OS223]
gi|304352755|gb|EFM17152.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
OS183]
gi|306913297|gb|EFN43719.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
BA175]
Length = 139
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
+ FP+ + V + + K Q SM GDIL+++ ++Q
Sbjct: 23 AAGFPS-PAQDYVE--QTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQ 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
GD ++ G+ K L R + L+ N + +
Sbjct: 80 PAHGDTVVAAV-NGEFTVKQLQLRPV--VQLLPRNALFSPIAI 119
>gi|330837533|ref|YP_004412174.1| SOS-response transcriptional repressor, LexA [Spirochaeta coccoides
DSM 17374]
gi|329749436|gb|AEC02792.1| SOS-response transcriptional repressor, LexA [Spirochaeta coccoides
DSM 17374]
Length = 209
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 18/145 (12%)
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE--IR 124
+ + +++ + + +P+L +G + N +TV +P ++
Sbjct: 60 AGLSRTMEVISEQYAPFQ-EMINVPVLGNIAAGK------PIMSEENMEDTVPIPASMLK 112
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
+ YA++ + ++ GD+ I+ A GD ++ + A
Sbjct: 113 RTPDPYYALKVRGESMVGAG-----IF-DGDLAIIRHATTARNGDIVVASVGEMESNAIT 166
Query: 185 LIS--RRGRSIDLMSLNCC-YPVDT 206
L R I+L + N P+ T
Sbjct: 167 LKRFYRDAHMIELRAENPEIGPIRT 191
>gi|333007509|gb|EGK26987.1| protein umuD [Shigella flexneri K-272]
gi|333019891|gb|EGK39163.1| protein umuD [Shigella flexneri K-227]
Length = 139
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ K SM+ GD+LI++SAI + GD ++I G+ K L R +
Sbjct: 48 PSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGD-IVIAAVDGEFTVKKLQLRP--T 104
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ +N Y T+ D
Sbjct: 105 VQLIPMNSAYSPITISSED 123
>gi|300023412|ref|YP_003756023.1| transcriptional repressor, LexA family [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525233|gb|ADJ23702.1| transcriptional repressor, LexA family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 239
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + SM GD +I+ GD ++ + K L ++G +
Sbjct: 148 NGEHFALEVKGDSMIEAGIHDGDTVIVRRCNTAENGDIIVALVEGEEATLKRL-RKKGST 206
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L + N + ++ R++
Sbjct: 207 IALEAANPEFKTRIFGPDQVDIQGRLV 233
>gi|2914397|pdb|1AY9|A Chain A, Wild-Type Umud' From E. Coli
gi|2914398|pdb|1AY9|B Chain B, Wild-Type Umud' From E. Coli
Length = 108
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ K SM+ GD+LI++SAI + GD ++I G+ K L R +
Sbjct: 17 PSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGD-IVIAAVDGEFTVKKLQLRP--T 73
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ +N Y T+ D
Sbjct: 74 VQLIPMNSAYSPITISSED 92
>gi|227514731|ref|ZP_03944780.1| possible repressor lexA [Lactobacillus fermentum ATCC 14931]
gi|227086935|gb|EEI22247.1| possible repressor lexA [Lactobacillus fermentum ATCC 14931]
Length = 212
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 36/222 (16%)
Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS----FNKSKRFGIEGRNRWP--STESI 58
S++++ + ++ + ++ ++ S LARK + ++ FN G+ ++P
Sbjct: 10 SNEEVIKYLNELRKQQKISISELARKVDMSKSTVSQYFN--------GKLQFPLNRAHDF 61
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
++L T LL L S + K IPLL G D + + +
Sbjct: 62 ARVL---GVTTDDLLGLDLSKVNPINRLTK-IPLLGTIACGDPILADENIT------DYL 111
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRT 177
P P ++ ++ + SM P + G ++++ +V G+ ++
Sbjct: 112 TEPVDYLPSGKLFYLRAK-------GQSMEPTIKNGSLVLIRQQPEVEDGEIAAVLFTDD 164
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + G ++ L+ N Y V + RIL
Sbjct: 165 DEATLKRVKR-SGDTMILLPDNRRYEPIIVSKDNPV---RIL 202
>gi|319891834|ref|YP_004148709.1| Phage repressor [Staphylococcus pseudintermedius HKU10-03]
gi|317161530|gb|ADV05073.1| Phage repressor [Staphylococcus pseudintermedius HKU10-03]
Length = 234
Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
E+ + + +G+G G V + H I D + SM
Sbjct: 119 EVAVYGYASAGTGETLIDG----------VEFTTQYNGH-----IPNHDFALQVNGDSME 163
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
PL+ +I+ ++ Q+N G ++ I G+ K + + I L+SLN YP +
Sbjct: 164 PLFEDKEIIFVDKTKQINSG-QIGIFVIDGEAYLKKVF-ISDKGIRLVSLNSKYPDLHFD 221
Query: 209 MS 210
S
Sbjct: 222 SS 223
>gi|326797423|ref|YP_004315243.1| phage repressor [Marinomonas mediterranea MMB-1]
gi|326548187|gb|ADZ93407.1| putative phage repressor [Marinomonas mediterranea MMB-1]
Length = 206
Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 140 HKTQDTSMLPLYRKGDILI-----LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM PL + D+++ + + RL GD++ K + + S+
Sbjct: 116 LRVMGDSMEPLLKDKDMVMIDTSRVKPTEAMPFAVRL-----DGDLLVKGIQRQGDGSLI 170
Query: 195 LMSLNCCYPVDTV----EMSDIEWIARILW 220
L+S N Y + D I ++W
Sbjct: 171 LVSRNKAYNDLIINSKQPPEDFAIIGAVVW 200
>gi|289168204|ref|YP_003446473.1| cI-like repressor, S. pneumoniae bacteriophage EJ-1 [Streptococcus
mitis B6]
gi|288907771|emb|CBJ22608.1| cI-like repressor, S. pneumoniae bacteriophage EJ-1 [Streptococcus
mitis B6]
Length = 262
Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSID 194
D + SM P Y GD++ + V+ D ++ + G+ K L+ +S
Sbjct: 175 ADFVIPIKGDSMEPDYHDGDLVFIQ--TSVDLNDGVIGVFNYNGEAYIKQLVIDTEQSY- 231
Query: 195 LMSLNCCYPV 204
L SLN Y
Sbjct: 232 LHSLNPAYKD 241
>gi|328880988|emb|CCA54227.1| Signal peptidase I [Streptomyces venezuelae ATCC 10712]
Length = 202
Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGD-IVAKVLISR 188
A+ + TSM P R GD +++ D +L++ D ++ K +I
Sbjct: 22 AVAVTTLGVRVDGTSMAPTLRAGDRVLVAPGSAGRARRFDVVLLRVEGKDALLVKRVIGL 81
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL---WASQ 223
G + ++S P + + R++ WA+Q
Sbjct: 82 PGDRVAIVS-TPEEPFQVLLQERGRGPVRRVVAPTWAAQ 119
>gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM
12444]
gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM
12444]
Length = 227
Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 31/220 (14%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
+ +R LT LA + G++ + + +R R P E +F++ LL
Sbjct: 23 ALRKRKGLTQVDLAERMGVEQPTIQRWERG-----QREPKFEQLFRLAEILGVDASALLS 77
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ P LY G + + + + W + +
Sbjct: 78 KDVAVPLG--------PTLYVKGDVQAGLWRTAIEHPASDW--IAFTGRADVSADL---- 123
Query: 135 TQDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRLLIKPR----TGDIVAKVLIS 187
+ SM +Y +G IL L + + G R+++ + K L+
Sbjct: 124 EHRFGLRVVGDSMDQVYPEGTILECISLFGRAEASPGKRVIVIRTDIHGDSEATVKELVE 183
Query: 188 RRGR-SIDLMSLNCCYPVDTVEMSD---IEW-IARILWAS 222
+ G + S N + + + +E IA I+ AS
Sbjct: 184 QNGELWLVPRSSNPAHMPIKLNSQEPGIVETRIAAIVVAS 223
>gi|294085036|ref|YP_003551796.1| DNA polymerase V [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664611|gb|ADE39712.1| DNA polymerase V [Candidatus Puniceispirillum marinum IMCC1322]
Length = 129
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
F S FP+ + + + + + SM GD+L+++ +
Sbjct: 12 FVSAGFPS-PAEDYID--STLDLNAHLIENPAATFFLRVAGDSMTGAGIHSGDLLMVDRS 68
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
+ D ++I + K L + L S N YP + W
Sbjct: 69 LTPKIND-IVIATIHNEFTVKRLGQHKEGWF-LQSENPDYPCLEIPEDSHIW 118
>gi|114707513|ref|ZP_01440409.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
[Fulvimarina pelagi HTCC2506]
gi|114537072|gb|EAU40200.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
[Fulvimarina pelagi HTCC2506]
Length = 183
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 26/183 (14%)
Query: 58 IFKILAATNETIC----------QLLDLPFSDGRT---TEKKEKEIPLLYF-PPSGSGGF 103
+ KI AT ++ L L S E + +P + +G G
Sbjct: 4 LVKISEATGVSMDWLCTGSGAREHLTSLTLSRDEPIMVDEGRVAIVPRIGTRADAGPGAL 63
Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK-TQDTSMLPLYRKGDILILNSA 162
+ + V RS ++ + R SMLP ++ GD ++++
Sbjct: 64 -------VQIEDDDVSYFGFRSAWLRAQGVEPKAVRLLDIHGDSMLPTFKDGDTALVDTG 116
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIA---RI 218
I R+ G ++ K +I +R S+ L S N Y + V ++ + R+
Sbjct: 117 INRVVDSRIYAIVFAGLLIVKRVILKRDGSLILRSDNRDVYEDEMVPSGEVSDLHVAGRV 176
Query: 219 LWA 221
WA
Sbjct: 177 FWA 179
>gi|213052515|ref|ZP_03345393.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213418856|ref|ZP_03351922.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
gi|213426679|ref|ZP_03359429.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213586424|ref|ZP_03368250.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
gi|213620597|ref|ZP_03373380.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213647572|ref|ZP_03377625.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213855468|ref|ZP_03383708.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 117
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 20/123 (16%)
Query: 90 IPLLYFPPSGSGGFFDS---GVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
IP+ P + + F FP+ + + Y I+ + +
Sbjct: 5 IPIASIPEALTIPLFTERCAAGFPSPATDYTEEELDL--------NAYCIRRPSSTFFVR 56
Query: 144 --DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
SM + GD+++++ A + GD ++I G+ K L + I L+ +N
Sbjct: 57 AIGDSMRDMGLHSGDLMVVDKAEKPLQGD-IVIAETEGEFTVKRLQLKP--RIALLPMNP 113
Query: 201 CYP 203
Y
Sbjct: 114 AYH 116
>gi|157371448|ref|YP_001479437.1| putative phage repressor [Serratia proteamaculans 568]
gi|157323212|gb|ABV42309.1| putative phage repressor [Serratia proteamaculans 568]
Length = 248
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 140 HKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ +SM P + GD++ I ++ G I+ + KVLI + + + SL
Sbjct: 158 IRISGSSMEPRLQDGDVVGINTDDTRIREGKTYAIR-HGNLLRVKVLIEQPDGGVTIRSL 216
Query: 199 NCC--------YPVDTVEMSDIEWIARILWAS 222
N YP + + R+ W+S
Sbjct: 217 NREEYQDEHLSYPQR---KDQLVVLGRVFWSS 245
>gi|219882924|ref|YP_002478088.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
A6]
gi|219861930|gb|ACL42271.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
A6]
Length = 143
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + T + SM GD L+++ AI
Sbjct: 27 PAGFPSPA---QDYFTGRIDLNAHLIRDITSTFLVRVSGHSMEGAGISDGDELVVDRAIT 83
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
G+ +++ G++ K L + L + N YP V
Sbjct: 84 PVDGN-VVVAIVDGELTIKRL-RLEHGRVRLAAENPDYPDLVVP 125
>gi|149003996|ref|ZP_01828803.1| phage transcriptional repressor [Streptococcus pneumoniae
SP14-BS69]
gi|147757978|gb|EDK64985.1| phage transcriptional repressor [Streptococcus pneumoniae
SP14-BS69]
Length = 252
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQ 164
+ F G ++ I D K SM P Y+ GDIL +++ +
Sbjct: 134 ASGFNYGFGYDDTDREIIEVDEQP----PHHDIATKVSGDSMQPDYQDGDILYLVDKGLT 189
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD +I K+ + L+SLN Y ++
Sbjct: 190 TYNGDLAVIAYGDRSYFKKIYTE--NGRLRLVSLNDKYEDIILD 231
>gi|218289122|ref|ZP_03493358.1| transcriptional repressor, LexA family [Alicyclobacillus
acidocaldarius LAA1]
gi|218240705|gb|EED07884.1| transcriptional repressor, LexA family [Alicyclobacillus
acidocaldarius LAA1]
Length = 202
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 107 GVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
P + + +P + + ++A++ GD+ I+
Sbjct: 89 AGLPISALEDIEGYLPLPRDVAKGDEVFALRVVGESMINAG------ILDGDLAIVRRQT 142
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+ GD ++ + K GR + L N P
Sbjct: 143 SADNGDIVVAMTDEDEATIKRFYREDGR-VRLQPENDDMPPLYFP 186
>gi|218768428|ref|YP_002342940.1| hypothetical protein NMA1636 [Neisseria meningitidis Z2491]
gi|121052436|emb|CAM08772.1| hypothetical protein NMA1636 [Neisseria meningitidis Z2491]
Length = 292
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 142 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 192
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
DTSM P+ KGD+L++ ++ D +LI+ +V L+ + +
Sbjct: 193 ----AMPDTSMSPVIEKGDLLVVEPRMRPADEDIVLIELSDKRLVVAHLVIDIAGRMLIY 248
Query: 197 SLNCCYPVDTVEMSDI 212
+ +
Sbjct: 249 QTGRPSEALDLPEGSV 264
>gi|288576456|ref|ZP_05978830.2| putative repressor protein [Neisseria mucosa ATCC 25996]
gi|288565446|gb|EFC87006.1| putative repressor protein [Neisseria mucosa ATCC 25996]
Length = 237
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 68/218 (31%), Gaps = 57/218 (26%)
Query: 42 KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
K F +G P E++ KI T + LL K +P L +
Sbjct: 32 KVFAKDGL---PKAETLIKIQDVTGCDLNWLL------------TGKGVPYLDRARPENA 76
Query: 102 GFF----------DSGVFPT-----------------GNKWNTVGVPEIRSPHNGIYAIQ 134
G F D+ P G+ + Y I+
Sbjct: 77 GAFPVSDTGAGAVDTLGNPVDLREFVFIPRYSVEAAAGHGQTVSDEKPLFCMAFRRYWIE 136
Query: 135 TQDTR-------HKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
TR + SM + GD ILI ++ + G +L D+ K +
Sbjct: 137 NYVTRQTDKLSVIAVKGDSMEGILNHGDNILINHAETEPRDGLYVL--RIGNDLFVKNIQ 194
Query: 187 SRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
GR + + S N Y +++ +DI I R+ W
Sbjct: 195 RLPGRLL-VKSANPLYEPFEIDLTADNTDIAIIGRVEW 231
>gi|253722209|pdb|1I4V|A Chain A, Solution Structure Of The Umud' Homodimer
gi|253722210|pdb|1I4V|B Chain B, Solution Structure Of The Umud' Homodimer
Length = 115
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ K SM+ GD+LI++SAI + GD ++I G+ K L R +
Sbjct: 24 PSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGD-IVIAAVDGEFTVKKLQLRP--T 80
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ +N Y T+ D
Sbjct: 81 VQLIPMNSAYSPITISSED 99
>gi|113953219|ref|YP_730811.1| UmuD protein [Synechococcus sp. CC9311]
gi|113880570|gb|ABI45528.1| UmuD protein [Synechococcus sp. CC9311]
Length = 147
Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQ 164
+ FP+ + + V + + + + SM GD+L+++ ++
Sbjct: 31 AAGFPSPAD-DYIDV--GIDLNEQLIRHPSSTFFLRVSGDSMTGEGIHHGDLLVVDRSLD 87
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
+ G R+++ G K L+ RG + L + N YP +
Sbjct: 88 PHPG-RVVVAILDGAFTLKRLVRHRG-HLRLEAANPDYPHLDLHH 130
>gi|289807247|ref|ZP_06537876.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 102
Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 7 PSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 64
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 65 VELLPENSEFTPIVVDLRE 83
>gi|213021398|ref|ZP_03335845.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 105
Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 10 PSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 67
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 68 VELLPENSEFTPIVVDLRE 86
>gi|153813056|ref|ZP_01965724.1| hypothetical protein RUMOBE_03464 [Ruminococcus obeum ATCC 29174]
gi|149830858|gb|EDM85948.1| hypothetical protein RUMOBE_03464 [Ruminococcus obeum ATCC 29174]
Length = 236
Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 18/150 (12%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNK 114
E K+L N + + + + + + L P +G+G F DS F
Sbjct: 87 EGQAKVLDYMNLLMKS-GEYIREEPIIYQFPRRTLSLYDLPVSAGTGQFLDSDRFSEIEV 145
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ V + D + SM PLY G I+ ++ + G + +
Sbjct: 146 GDEVS--------------SSADFGVRVCGDSMEPLYLDGQIIWIHKQETLEEG-EIGVF 190
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
GD K + I L+SLN Y
Sbjct: 191 FLDGDAYVKKYH-QSDSGIQLISLNKKYAP 219
>gi|121635114|ref|YP_975359.1| hypothetical protein NMC1358 [Neisseria meningitidis FAM18]
gi|304387242|ref|ZP_07369439.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
gi|120866820|emb|CAM10578.1| hypothetical protein NMC1358 [Neisseria meningitidis FAM18]
gi|304338730|gb|EFM04843.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
gi|325208370|gb|ADZ03822.1| peptidase domain protein [Neisseria meningitidis NZ-05/33]
Length = 292
Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 142 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 192
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
DTSM P+ KGD+L++ ++ D +LI+ +V L+ + +
Sbjct: 193 ----AMPDTSMSPVIEKGDLLVVEPRMRPADEDIVLIELSDKRLVVAHLVIDIAGRMLIY 248
Query: 197 SLNCCYPVDTVEMSDI 212
+ +
Sbjct: 249 QTGRPSEALDLPEGSV 264
>gi|256847032|ref|ZP_05552478.1| LexA repressor [Lactobacillus coleohominis 101-4-CHN]
gi|256715696|gb|EEU30671.1| LexA repressor [Lactobacillus coleohominis 101-4-CHN]
Length = 208
Score = 42.2 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 23/125 (18%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
+ L T E + L + E K+ +IPLL +G + + +
Sbjct: 65 RALEITPEGLS-FLGI--------EPKQNQIPLLGIVAAG------EPILAEQDATDFFP 109
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
+P + H+ ++ +Q Q TSM+ + GD +I+ N GD ++
Sbjct: 110 IPPTINDHDDLFMLQ-------IQGTSMINMGILDGDKVIVRRQNTANNGDVVIAMTSDN 162
Query: 179 DIVAK 183
+ K
Sbjct: 163 EATCK 167
>gi|262044717|ref|ZP_06017768.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259037939|gb|EEW39159.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 239
Score = 42.2 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM P+ G + +N+ + ++ G K+L ++ + S N
Sbjct: 153 FPVRGDSMEPVIPDGTTVAINTEDKKIVDGKIYAISEDGWKRVKMLYRTGPDTVSVRSFN 212
Query: 200 C-CYPVDTVEMSDIEWIARILWAS 222
+P + ++ IE I R+ W S
Sbjct: 213 SVEHPAEDKPLNKIEIIGRVFWYS 236
>gi|117926204|ref|YP_866821.1| phage repressor [Magnetococcus sp. MC-1]
gi|117609960|gb|ABK45415.1| putative phage repressor [Magnetococcus sp. MC-1]
Length = 264
Score = 42.2 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ Q SM P + GD+L+L+ + ++ + + K L GR I ++S N
Sbjct: 177 IQAQGDSMYPTFDDGDVLLLDMGQREVVDGKVFVLRSEEYLYVKRLQILPGR-ILIVSDN 235
Query: 200 CCYPVDTVEMSDIE-W--IARILWA 221
Y V + E W + R++W
Sbjct: 236 PKYQSVQVTREERELWKIVGRVVWV 260
>gi|52842310|ref|YP_096109.1| prophage repressor CI-like [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629421|gb|AAU28162.1| hypothetical prophage repressor CI-like [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 234
Score = 42.2 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 14/173 (8%)
Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATNETICQLLDLPFS-DGR 81
GL RKA + T K R R +R P E I ++ A + + L+ L +
Sbjct: 25 AKGLTRKALEELTDDLKQSRISNWERGDRTPGPEEIKQLARALDISPAYLMCLTDEKRPK 84
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+PLL + D F + + + I S + +
Sbjct: 85 KIPGLGSLVPLLDHQQA-----CDPKGFIQRVRNEHNSDEISFIPISSELSTR--LGENA 137
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRR 189
K +D SM P R DILI++ +++ G + + +++ +
Sbjct: 138 FALKMKDESMHPELRVNDILIIDPNSELHPGSLVAAQLNEENEVIVRRYKQLT 190
>gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
Length = 244
Score = 42.2 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 5/134 (3%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
S+ TE ++PL+ + +G P G+ + + P H + +
Sbjct: 100 SESNITEWPVGKLPLISWVQAGDWSEIVDNFQP-GDAEDWIACPFPSGSHGFVLRVVGDS 158
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ + D S +R+GD + +N + ++ + K L+ L +
Sbjct: 159 MYNPSGDMS----FREGDFISVNPDREAQHRSLVIARHNGEKATFKQLLIDENDGPMLFA 214
Query: 198 LNCCYPVDTVEMSD 211
LN +P + +
Sbjct: 215 LNPNWPKRYIALDK 228
>gi|325144655|gb|EGC66953.1| hypothetical protein NMBM01240013_0871 [Neisseria meningitidis
M01-240013]
Length = 292
Score = 42.2 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 143 ADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV---- 192
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
DTSM P+ KGD+L++ ++ D +LI+ +V L
Sbjct: 193 ---AMPDTSMSPVIEKGDLLVVEPRMRPADEDIVLIELSDKRLVVAHL 237
>gi|119715961|ref|YP_922926.1| peptidase S24, S26A and S26B [Nocardioides sp. JS614]
gi|119536622|gb|ABL81239.1| peptidase S24, S26A and S26B [Nocardioides sp. JS614]
Length = 113
Score = 42.2 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK-VLISRRGRSID----LM 196
SM PL GD L+++ G ++ + G + K R R+ L+
Sbjct: 12 VSGRSMTPLLAPGDRLLVSYRRPARPGAVVVARLADGTVAVKRAAQRRTTRTGQAGWWLL 71
Query: 197 SLNCCYPVDT 206
S N VD+
Sbjct: 72 SDNPDEGVDS 81
>gi|161503561|ref|YP_001570673.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160864908|gb|ABX21531.1| hypothetical protein SARI_01639 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 139
Score = 42.2 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + + K SM GD+L+++S+
Sbjct: 23 PCGFPSPAA-DYVE--QRIDLNELLVSHPGSTYFVKATGDSMIEAGISDGDLLVVDSSRT 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L +N Y + D
Sbjct: 80 AEHGD-IVIAAVGGEFTVKRLQLRP--TVQLNPMNSAYSPIIIGSED 123
>gi|229104259|ref|ZP_04234930.1| Phage transcriptional repressor [Bacillus cereus Rock3-28]
gi|228679155|gb|EEL33361.1| Phage transcriptional repressor [Bacillus cereus Rock3-28]
Length = 223
Score = 42.2 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 HLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLEV 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L T + IP++ +G+ F + + +P
Sbjct: 69 LTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNDPIHEPQTYDLSAEDVKIIGRVVQA 219
>gi|320182370|gb|EFW57268.1| putative transcriptional regulator [Shigella boydii ATCC 9905]
gi|323170913|gb|EFZ56563.1| peptidase S24-like family protein [Escherichia coli LT-68]
Length = 224
Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
++ + SM P GD++ +N+ + G I + K LI S
Sbjct: 129 ESSAKLVRVTGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSD-LLRVKTLI-ATPTS 186
Query: 193 IDLMSLNC-CYPVDTVEMSD----IEWIARILWAS 222
+ + S+N YP + ++ + + I R+ W+S
Sbjct: 187 VIIRSINREEYPDEVMDRDEFHKTVRIIGRVFWSS 221
>gi|260565880|ref|ZP_05836352.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260151001|gb|EEW86107.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
Length = 85
Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
T P + G +++++ V GD + + + K LI G+ L LN YP
Sbjct: 3 TGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 60
>gi|255067367|ref|ZP_05319222.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC
29256]
gi|255048337|gb|EET43801.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC
29256]
Length = 218
Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 27/181 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTT-----EKKEKEIPLLYFPPSGSGGFFDSG 107
P+ E+++++ + LL D T + ++IP+L +
Sbjct: 45 PNAENLYELSQVLGCDLGWLLKGEGEDTNTNVVFIEDSNNRKIPVLDVAQIENWNLRIPI 104
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
P + + + +A+ K SM P + +GD+++++ +
Sbjct: 105 PNPIKGAYLMSNIHDPN----KCFAL-------KISGDSMNPDFVEGDLIVVDIEQKPEP 153
Query: 168 GDRLLIKPRTGDIVAKVLISRR-----GRSIDLMSLNCCYPVDTVEMSDIEWI-----AR 217
G+ ++ + D+V + L LN +P + IE I R
Sbjct: 154 GEFVVARI-DKDVVFRKYQVVSSVNGEPECFSLSPLNRDFPPFSSSRHTIEIIGTMVEHR 212
Query: 218 I 218
I
Sbjct: 213 I 213
>gi|149022031|ref|ZP_01835993.1| phage transcriptional repressor [Streptococcus pneumoniae
SP23-BS72]
gi|147929875|gb|EDK80864.1| phage transcriptional repressor [Streptococcus pneumoniae
SP23-BS72]
Length = 263
Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQ 164
+ F G ++ I D K SM P Y+ GDIL +++ +
Sbjct: 145 ASGFNYGFGYDDTDRETIEVDERP----PRHDIATKVSGDSMQPDYQDGDILYLVDKGLT 200
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD +I K+ + L+SLN Y ++
Sbjct: 201 TYNGDLAIIAYGDRSYFKKIYTE--NGRLRLVSLNDKYEDIILD 242
>gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator
MP104C]
gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator
MP104C]
Length = 245
Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 47/219 (21%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
I I R ER ++ LA A LD + SK + PS E++ +I +
Sbjct: 2 DIGPRIARFRERAGMSQKKLAELAALDRSHI--SKIESGDTS---PSLEALMRICESMGV 56
Query: 68 TICQLLDL-PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRS 125
T+ + + IP+ + E+
Sbjct: 57 TLAEFFGSDVQPVPVVAGVVKARIPI--------------------RTEDYYEGFLELDK 96
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR----TGDI 180
+A+Q SM+ +GD + + + G ++ G I
Sbjct: 97 KCRADFAVQ-------VSGDSMVWAGINEGDFALCRRSEVAHNGQMVVAAIENNDWGGTI 149
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
V G+ L S N Y + + ARI+
Sbjct: 150 KYYV---NNGKHYLLRSANPEYKDRIMPSN-----ARIV 180
>gi|167855686|ref|ZP_02478443.1| LexA repressor [Haemophilus parasuis 29755]
gi|167853204|gb|EDS24461.1| LexA repressor [Haemophilus parasuis 29755]
Length = 209
Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 13/123 (10%)
Query: 105 DSGVFP------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
D P G + E P NG D K SM + GD+L
Sbjct: 79 DEEGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLL 138
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIE 213
++ V G +++ ++ K L + G I L N ++ +IE
Sbjct: 139 AVHKTKSVRNGQ-VVVARVDDEVTVKRLEKK-GDLIYLHPENDELEPIIIDPRQSYIEIE 196
Query: 214 WIA 216
IA
Sbjct: 197 GIA 199
>gi|78212710|ref|YP_381489.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9605]
gi|78197169|gb|ABB34934.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9605]
Length = 143
Score = 41.8 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 14/133 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
++ +PL + FP+ + V V + + T
Sbjct: 5 HRPLPLQPKRSRLTLPLAGERVA--------AGFPSPAD-DYVDV--GIDLNEQLIRHPT 53
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SM GD+L+++ ++ G ++++ G K L+ RGR +
Sbjct: 54 STFFLHVSGESMTDAGIHDGDLLVVDRSLDPRPG-QVVVAVLDGAFTLKRLMHHRGR-LR 111
Query: 195 LMSLNCCYPVDTV 207
L + + YP +
Sbjct: 112 LEAAHPDYPPLEL 124
>gi|329113614|ref|ZP_08242393.1| Phage Repressor [Acetobacter pomorum DM001]
gi|326697060|gb|EGE48722.1| Phage Repressor [Acetobacter pomorum DM001]
Length = 264
Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCG--DRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+T SM P R GD L++++ D + + G ++ K L S I + S
Sbjct: 168 LETSGDSMEPTLRSGDRLLVDTR---RRHILDGIHVLVVNGGLLVKRLSSEPSGKICIAS 224
Query: 198 LNCCYPVDTVEMSDIEW 214
N Y + S W
Sbjct: 225 DNHLYKEFLTDASRFRW 241
>gi|313139988|ref|ZP_07802181.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132498|gb|EFR50115.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 141
Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-------KTQDTSMLP--LYRKGDI 156
+ FP+ P + G +++ +H SM ++ GD
Sbjct: 19 AAGFPS---------PALDGREEG-FSLDAHVIKHPEYTFIATVAGDSMEGAGIFH-GDW 67
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
L+++S++ GD +++ G++ K L+SR GR + L + N YP
Sbjct: 68 LVVDSSLTPEDGD-VVVAVLDGELTVKRLLSRDGRPM-LHAENPRYPD 113
>gi|83589968|ref|YP_429977.1| SOS-response transcriptional repressor, LexA [Moorella
thermoacetica ATCC 39073]
gi|123739298|sp|Q2RJF5|LEXA_MOOTA RecName: Full=LexA repressor
gi|83572882|gb|ABC19434.1| SOS-response transcriptional repressor, LexA [Moorella
thermoacetica ATCC 39073]
Length = 205
Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 16/130 (12%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
T K +PLL +G + N + +P + + +
Sbjct: 74 PALTRAKNMVSVPLLGKITAGQ------PILAFENIEDVFPLPADLAGAENAFML----- 122
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
SM GD LI+ GD +++ + K R I+L+
Sbjct: 123 --HVSGDSMIEAGILDGDYLIVRPQDTAENGD-IVVALLEDEATVKYF-YRYPDHIELVP 178
Query: 198 LNCCYPVDTV 207
N V
Sbjct: 179 ANSSMQPLIV 188
>gi|114321148|ref|YP_742831.1| putative phage repressor [Alkalilimnicola ehrlichii MLHE-1]
gi|114227542|gb|ABI57341.1| putative phage repressor [Alkalilimnicola ehrlichii MLHE-1]
Length = 247
Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM+P GD+L++++ Q D + + +VAK L + + S N Y
Sbjct: 163 GDSMVPTVADGDLLLVDTREQEPAEDAIYVLRLEHHVVAKRLQVDWKGGLWVRSDNPQYA 222
Query: 204 VDTVEMSD---------IEWIAR 217
+ D + W+AR
Sbjct: 223 DQHISTEDAAELNIVGRVVWMAR 245
>gi|152987517|ref|YP_001345496.1| protein MucA [Pseudomonas aeruginosa PA7]
gi|150962675|gb|ABR84700.1| protein MucA [Pseudomonas aeruginosa PA7]
Length = 147
Score = 41.8 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + + S + SM L GDIL+++ +I
Sbjct: 28 AAGFPS-PAEDHIE--ASLSLDELCVVHPAATFFLRVVGDSMTGLGIFDGDILVVDRSIT 84
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G +++ G+ K L G + L + N YP + +
Sbjct: 85 PRAG-MVVVAVVNGEFTCKQLAYEHGAPV-LRAANKAYPDIRLRDGE 129
>gi|188535218|ref|YP_001909015.1| LexA repressor [Erwinia tasmaniensis Et1/99]
gi|229621213|sp|B2VKA1|LEXA_ERWT9 RecName: Full=LexA repressor
gi|188030260|emb|CAO98147.1| LexA repressor [Erwinia tasmaniensis Et1/99]
Length = 202
Score = 41.8 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQ------TQDTRHKTQDTSMLPL-YRKGDI 156
D P G P + H G Y + D + SM + GD+
Sbjct: 72 DESGLPL-IGRVAAGEPLLAEQHIEGHYQVDPGLFKPGADFLLRVSGMSMKNIGIMDGDL 130
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
L ++ V G +++ ++ K L + G ++L+ N + V++
Sbjct: 131 LAVHKTEDVRNGQ-VVVARIDDEVTVKRL-KKNGNMVELLPENPDFQPIVVDLRQ 183
>gi|311279424|ref|YP_003941655.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae
SCF1]
gi|308748619|gb|ADO48371.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae
SCF1]
Length = 143
Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
++ + +P F S FP+ + V + + + + + K
Sbjct: 11 RERRSVPFFPFYSS-----LVPCGFPS-PAQDYVE--KRIDLNELLVSHPSATYFVKASG 62
Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM GD+L+++SA+ G+ ++I G+ K L R ++ L+ +N Y
Sbjct: 63 DSMVEAGIGDGDLLVVDSALTAEHGN-IVIAAVDGEFTVKRLQLRP--TVQLIPMNSAYK 119
Query: 204 VDTVEMS 210
+E
Sbjct: 120 PIVIESE 126
>gi|296504207|ref|YP_003665907.1| LexA repressor [Bacillus thuringiensis BMB171]
gi|296325259|gb|ADH08187.1| LexA repressor [Bacillus thuringiensis BMB171]
Length = 219
Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 9 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 64
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ + + +P
Sbjct: 65 LTTQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENI--------EGYLP 116
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 117 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 172
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 173 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 215
>gi|294637311|ref|ZP_06715609.1| toxin-antitoxin system, antitoxin component, Xre family
[Edwardsiella tarda ATCC 23685]
gi|291089519|gb|EFE22080.1| toxin-antitoxin system, antitoxin component, Xre family
[Edwardsiella tarda ATCC 23685]
Length = 216
Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 30/145 (20%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRSPHNGIYA 132
+ + +PLL +G+ W + E+
Sbjct: 73 VSGNAIPGPDLYRRVPLLSQVQAGN--------------WKEIVENHFDELTEWIETTAK 118
Query: 133 IQTQDTRHKTQDTSM--------LPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAK 183
+ + SM LP +G I+I++ G ++ + ++ + K
Sbjct: 119 VSPYAFSLRVVGDSMSNPGSGVSLP---EGSIVIVDPEGDPVNGRIVVARLKSTNEATVK 175
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE 208
L +I LM LN Y ++
Sbjct: 176 KLSIDGP-NIYLMPLNPNYKPIQLD 199
>gi|317121920|ref|YP_004101923.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
marianensis DSM 12885]
gi|315591900|gb|ADU51196.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
marianensis DSM 12885]
Length = 201
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 16/140 (11%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+ D + +PL+ +G + N + + +P P ++A+
Sbjct: 65 AIEILDEANVRTRTVPVPLVGQVTAGQ------PILAVENIEDILPLPADLVPEGEVFAL 118
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GD +I+ GD ++ V + R G
Sbjct: 119 -------RIRGDSMIGAGILDGDYVIVRRQDTAQNGDIVVALLEDEATVKRFYQERDG-- 169
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I L N V + +
Sbjct: 170 IRLQPENPAMEPIRVRHARV 189
>gi|309379597|emb|CBX21768.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 228
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P F G D+ F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLT------GEGSPFPDEAPKKSFAYDTLGNEVDTDEFVFV 95
Query: 113 NKWNTVGVPEIR---SPHNGIYAIQTQDTRHK--------------TQDTSMLPLYRKGD 155
+++ ++ + + + + SM + GD
Sbjct: 96 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTCDVKNLSVISVKGDSMEGVLNDGD 155
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP----VDTVEMSD 211
+++N + D L + +++ K L G I+++S N YP D
Sbjct: 156 SILVNHSENTPK-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNHPADD 214
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 215 VEIIGRVEW 223
>gi|290474009|ref|YP_003466883.1| hypothetical protein XBJ1_0950 [Xenorhabdus bovienii SS-2004]
gi|289173316|emb|CBJ80091.1| hypothetical protein XBJ1_0950 [Xenorhabdus bovienii SS-2004]
Length = 217
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
ID + +++N+ L+R GL + N +R P+ ++ I + ++
Sbjct: 23 IDFLIKKNNIDSQTLSRLTGLGIATINSLRRGVGN-----PTIATVSSIADVFGVNVGEI 77
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIRSPHNGI 130
D S+ E+ IPL+ + + +G N + + + +
Sbjct: 78 TDGKLSESNKNEEIISSIPLVRYDEL--------DGYVSGKIITKNLYKLSIQDNHEDSL 129
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+A++ + + P + I I++ V D +L+K + I + +
Sbjct: 130 FAVEFGNNL-------LFPYFDSNTIAIVSKTEAVCDSDVVLVKIKDAPICFRQV 177
>gi|258542190|ref|YP_003187623.1| LexA repressor [Acetobacter pasteurianus IFO 3283-01]
gi|256633268|dbj|BAH99243.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-01]
gi|256636327|dbj|BAI02296.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-03]
gi|256639380|dbj|BAI05342.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-07]
gi|256642436|dbj|BAI08391.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-22]
gi|256645491|dbj|BAI11439.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-26]
gi|256648544|dbj|BAI14485.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-32]
gi|256651597|dbj|BAI17531.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654588|dbj|BAI20515.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
3283-12]
Length = 216
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ L + ++ +LP + R + + K IPL + P
Sbjct: 61 ARALEV--IQLPEMQELPPNVVRASFTRPKAETVRIPLYGRIAA---------GLPIEAV 109
Query: 115 WNT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
+T + VP YA++ SM+ GD +I+ Q G
Sbjct: 110 PDTSHVLTVPAEMLGSGDYYALE-------VAGDSMVDAGILDGDSVIIRRTDQAENGQI 162
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
++ ++ K L + G I L N Y V +
Sbjct: 163 VVALIDEHEVTLKRLRRK-GNMIALEPANSSYETRIVPAEKL 203
>gi|229496464|ref|ZP_04390180.1| putative phage repressor [Porphyromonas endodontalis ATCC 35406]
gi|229316692|gb|EEN82609.1| putative phage repressor [Porphyromonas endodontalis ATCC 35406]
Length = 226
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
+ ++ IPL+ +G ++ + + + Q D
Sbjct: 90 PSHTPQEGIPLIPIEAW--------AGALSGEDYSIMEY---ECERYVVPSFQDADFLIT 138
Query: 142 TQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ SM P Y GDI+ + S + G +I G ++ KV +I L+S
Sbjct: 139 VRGDSMTPKYYSGDIVACRKVFLSDLWFQWGKVYIIDTNQGSLLKKVRRGSSEETITLVS 198
Query: 198 LNCCYPVDTVEMSDIEWIA 216
N Y + I IA
Sbjct: 199 ENPEYEPFELRKDQIYNIA 217
>gi|269214789|ref|ZP_05987153.2| putative repressor protein [Neisseria lactamica ATCC 23970]
gi|269209033|gb|EEZ75488.1| putative repressor protein [Neisseria lactamica ATCC 23970]
Length = 236
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P F G D+ F
Sbjct: 50 PKSETLKKIKQLKGCSIDWLLT------GEGSPFPDEAPKKSFAYDTLGNEVDTDEFVFV 103
Query: 113 NKWNTVGVPEIR---SPHNGIYAIQTQDTRHK--------------TQDTSMLPLYRKGD 155
+++ ++ + + + + SM + GD
Sbjct: 104 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTCDVKNLSVISVKGDSMEGVLNDGD 163
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP----VDTVEMSD 211
+++N + D L + +++ K L G I+++S N YP D
Sbjct: 164 SILVNHSENTPK-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNHPADD 222
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 223 VEIIGRVEW 231
>gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)]
gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341]
gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385]
gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)]
gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341]
gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385]
Length = 237
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI------KPRTGDIVAKVLIS 187
SM P+ G + ++CGD+ LI G++ K L
Sbjct: 140 PENAVCVAITGDSMEPVLPNGSTV------GIDCGDKTLIDGKIYAINHNGELFIKKLYR 193
Query: 188 RRGRSIDLMSLNC-CYPVDTVEMSDIE-----WIARILWAS 222
G + + S N YP + + R+ W S
Sbjct: 194 LPGGGLRIYSFNEIEYPPREYSQEQVAEQQISIVGRVFWYS 234
>gi|83816438|ref|YP_444450.1| umuD protein [Salinibacter ruber DSM 13855]
gi|83757832|gb|ABC45945.1| umuD protein [Salinibacter ruber DSM 13855]
Length = 140
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + + TSM GDIL+++ A++
Sbjct: 23 EAGFPSPAS-DYVE--TELDLAEHLIEHEAATYYLRVSGTSMTRAGIHDGDILVVDRAVE 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
GD +++ ++ K L +R GR+
Sbjct: 80 PADGD-VVVAALDAELTVKRLRTRDGRAF 107
>gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens
FD-1]
Length = 217
Score = 41.8 bits (97), Expect = 0.068, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ + SM P + D++++ +++ ++ D + K + + I L
Sbjct: 125 DYFWLEVKGDSMEPELHEKDLVLVQEQSELDAECYAVVTVDNEDGLVKQVQIDNTK-ITL 183
Query: 196 MSLNCCYPVDTVEMSDIEWIARI 218
S+N YP E D + RI
Sbjct: 184 KSINPYYPPRVFEKQD---MNRI 203
>gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586]
gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586]
Length = 237
Score = 41.8 bits (97), Expect = 0.068, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI------KPRTGDIVAKVLIS 187
SM P+ G + ++CGD+ LI G++ K L
Sbjct: 140 PENAVCVAITGDSMEPVLPNGSTV------GIDCGDKTLIDGKIYAINHNGELFIKKLYR 193
Query: 188 RRGRSIDLMSLNC-CYPVD-----TVEMSDIEWIARILWAS 222
G + + S N YP V I + R+ W S
Sbjct: 194 LPGGGLRIYSFNEIEYPPREYLQEQVAEQQISIVGRVFWYS 234
>gi|224282829|ref|ZP_03646151.1| putative prophage repressor [Bifidobacterium bifidum NCIMB 41171]
Length = 102
Score = 41.8 bits (97), Expect = 0.068, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 141 KTQDTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
SM ++ GD L+++S++ GD +++ G++ K L+SR GR + L +
Sbjct: 12 TVAGDSMEGAGIFH-GDWLVVDSSLTPEDGD-VVVAVLDGELTVKRLLSRDGRPM-LHAE 68
Query: 199 NCCYPV 204
N YP
Sbjct: 69 NPRYPD 74
>gi|253575013|ref|ZP_04852352.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845469|gb|EES73478.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
Length = 232
Score = 41.8 bits (97), Expect = 0.069, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+PL+ +G + + V +P+ + ++ +
Sbjct: 101 VPLVGKTAAGIEKTYYEFIR------GYVPIPK-EVIKGTCFVLEVDGDSMN--GDGIE- 150
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
GD +++ V GD L++ +I K + G+ I L+S N YP V
Sbjct: 151 ---HGDFVVIKQQPVVENGDIALLRIED-EITLKRIQREGGKII-LVSSNPAYPKRAVPE 205
Query: 210 SDI 212
++
Sbjct: 206 RNV 208
>gi|78358014|ref|YP_389463.1| SOS mutagenesis protein UmuD [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220419|gb|ABB39768.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 208
Score = 41.8 bits (97), Expect = 0.069, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK-----GDILILN 160
+ FP+ + + + + + SM R GDIL+++
Sbjct: 92 AAGFPSPAD-DYID--RRLDLNEYLVRNPESTFYVRVHGESM----RDAGIWAGDILVVD 144
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
A+Q G R++I G++ K L R + L+ N Y V +
Sbjct: 145 RAVQPATG-RVVIAVLDGELTVKRLKKEGDRLL-LVPENPDYSPVDVSGRE 193
>gi|330830155|ref|YP_004393107.1| peptidase S24-like domain-containing protein [Aeromonas veronii
B565]
gi|328805291|gb|AEB50490.1| Peptidase S24-like domain protein [Aeromonas veronii B565]
Length = 120
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + + + A + SM+ R GD+L+++ + +
Sbjct: 4 GFPS-PAQDYTE--QTIDLNQLCVAHPAATYFVRAAGDSMVDHGIRDGDLLVVDRSRKAR 60
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G ++I G+ K L + ++ L+ N Y
Sbjct: 61 HGS-VVIAAVDGEFTVKKL--QLAPTVALLPGNPAYRPIHFNEGQ 102
>gi|229047381|ref|ZP_04192978.1| Phage transcriptional repressor [Bacillus cereus AH676]
gi|228723966|gb|EEL75314.1| Phage transcriptional repressor [Bacillus cereus AH676]
Length = 239
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 29 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 84
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ + + +P
Sbjct: 85 LATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENI--------EGYLP 136
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 137 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 192
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 193 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 235
>gi|228959912|ref|ZP_04121578.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229128978|ref|ZP_04257952.1| Phage transcriptional repressor [Bacillus cereus BDRD-Cer4]
gi|229146271|ref|ZP_04274645.1| Phage transcriptional repressor [Bacillus cereus BDRD-ST24]
gi|228637190|gb|EEK93646.1| Phage transcriptional repressor [Bacillus cereus BDRD-ST24]
gi|228654476|gb|EEL10340.1| Phage transcriptional repressor [Bacillus cereus BDRD-Cer4]
gi|228799764|gb|EEM46715.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 223
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 13 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 68
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ + + +P
Sbjct: 69 LATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENI--------EGYLP 120
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 121 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 176
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 177 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219
>gi|30021801|ref|NP_833432.1| LexA repressor [Bacillus cereus ATCC 14579]
gi|29897357|gb|AAP10633.1| LexA repressor [Bacillus cereus ATCC 14579]
Length = 219
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 34/224 (15%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ + + A K GL PT+ +S G+ S +++ K+ T L
Sbjct: 9 RLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTDDLER 64
Query: 75 LPFSDGRTT-------------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
L + T + IP++ +G+ + + +P
Sbjct: 65 LATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENI--------EGYLP 116
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ + + + + TSM + G +++ V G ++K D
Sbjct: 117 ML----STFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDAT 172
Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDT--VEMSDIEWIARILWA 221
K + + G I L+ L + + T + D++ I R++ A
Sbjct: 173 VKKIS-KSGSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 215
>gi|311064132|ref|YP_003970857.1| UmuD protein [Bifidobacterium bifidum PRL2010]
gi|310866451|gb|ADP35820.1| UmuD protein [Bifidobacterium bifidum PRL2010]
Length = 141
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-------KTQDTSMLP--LYRKGDI 156
+ FP+ P + G +++ H SM ++ GD
Sbjct: 19 AAGFPS---------PALDGREEG-FSLDAHVIEHPEYTFIVTVAGDSMEGAGIFH-GDW 67
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
L+++ ++ GD +++ G++ K L+SR GR + L + N YP
Sbjct: 68 LVVDRSLTPEDGD-VVVAVLDGELTVKRLLSRDGRPM-LHAENPRYPD 113
>gi|317129106|ref|YP_004095388.1| transcriptional repressor, LexA family [Bacillus cellulosilyticus
DSM 2522]
gi|315474054|gb|ADU30657.1| transcriptional repressor, LexA family [Bacillus cellulosilyticus
DSM 2522]
Length = 208
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 14/114 (12%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
+++ L R +E +P++ +G + N + + +P
Sbjct: 68 EVIGLNDEARRVSESPSVYVPVIGKVTAG------DPITAIENVEDYLPLPASFVHDENS 121
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ ++ SM GD +++ N GD ++ + K
Sbjct: 122 FILE-------ISGDSMIEAGIFDGDYVVVRQQQNANNGDIVVAMTEEDEATVK 168
>gi|270262714|ref|ZP_06190985.1| transcriptional repressor [Serratia odorifera 4Rx13]
gi|270043398|gb|EFA16491.1| transcriptional repressor [Serratia odorifera 4Rx13]
Length = 234
Score = 41.8 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 140 HKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ +SM P + GD++ I ++ G I+ + KVLI + + + SL
Sbjct: 144 IRISGSSMEPRLQDGDVVGINTDDTRIREGKTYAIR-HGNLLRVKVLIEQPDGGVTIRSL 202
Query: 199 NC-----CYPVDTVEMSDIEWIARILWAS 222
N + + + R+ W+S
Sbjct: 203 NREEYQDEHLSYAQRKDQLVVLGRVFWSS 231
>gi|46200913|ref|ZP_00056183.2| COG2932: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 221
Score = 41.8 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 15/182 (8%)
Query: 48 GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE-----IPLLYFPPSGSGG 102
GR+ PS+E + ++ A I LL +P + GG
Sbjct: 40 GRSADPSSEKLTRVAAVLQMPIEALLYDEDGKQAPAVTTPSRRDYVAVPFVDVEADMGGG 99
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNS 161
G W P +S G+ ++ R + + SM P GD+++L++
Sbjct: 100 AVAESEE-EGAPW---HFP--KSWLRGVLRLRPAGLRLIRVRGDSMEPTLLGGDVVMLDT 153
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ + + +VAK L G S+ ++S N Y +I I RI
Sbjct: 154 TQTIPNPTGIFVLHDGFGLVAKRLERLAGGEIPSVRIISDNSRYSPYDRSGEEIRIIGRI 213
Query: 219 LW 220
+W
Sbjct: 214 VW 215
>gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2]
gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans
PW2]
Length = 211
Score = 41.8 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 116 NTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ +P + H Y ++ + M +Y +G +++++ + G ++
Sbjct: 101 ECIELPSEVALAHPNAYFLE-------VKGDCMNRVYPEGCLILIDPESEPRSGSIAVVS 153
Query: 175 PRTGDIVAKVLISRRGRSIDLM--SLNCCYPVDTVEMSD 211
+ + + L + ++ L S N + +E D
Sbjct: 154 IDGSECLVRRL-YQTAHTLVLSPESWNSEHCDVIIERGD 191
>gi|312959301|ref|ZP_07773818.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
WH6]
gi|311286018|gb|EFQ64582.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
WH6]
Length = 244
Score = 41.8 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 28/219 (12%)
Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL--- 72
+ +R ++P+ L R+ G+ ++ ++ + G+ PS + I ++ + QL
Sbjct: 13 LLDRDRISPTELYRRTGVPQSTLSR----ILSGKIVDPSDKHISRVAEYFRVSTDQLRGR 68
Query: 73 LDLPFSDGRTTEKKEKEIPLLYF----PPSGSGG----FFDSGVFPTGNKWNTVGVPEIR 124
+ L S + E+ + P F G+ + E
Sbjct: 69 VALGVSREEGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEESEKA 128
Query: 125 SPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSAIQVNCGDRL----LIK 174
S G +++ + + SMLP+ R G + +N+ GD +
Sbjct: 129 SLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSA-IGDIVDGDLYAI 187
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI 212
G + K L I L S N +P + DI
Sbjct: 188 NHNGQLRVKQLYRL-PSGIRLRSFNRDEHPDEDYSFQDI 225
>gi|330953440|gb|EGH53700.1| LexA repressor [Pseudomonas syringae Cit 7]
Length = 202
Score = 41.8 bits (97), Expect = 0.072, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 16/128 (12%)
Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
+ EIP+L +G+ P G + + + + D + Q
Sbjct: 75 PELLEIPVLGRVAAGA---------PIGP---DLDIHSTLHLDRSTFT-RVPDYLLRVQG 121
Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM GD++ ++ Q + G ++ + G++ K L R + L+ N Y
Sbjct: 122 DSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQRR-AEQVRLLPRNPAYE 179
Query: 204 VDTVEMSD 211
V
Sbjct: 180 PIIVTPDQ 187
>gi|317505418|ref|ZP_07963339.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315663473|gb|EFV03219.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 256
Score = 41.8 bits (97), Expect = 0.072, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 42/243 (17%)
Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--------P--STES 57
KI I+ ++++ +T L +K G +++ G + + +W P STE
Sbjct: 19 KILSRIEELSKQEGITIGALEKKIGASKGVLSRAIAKGTDIQAKWIESLVENYPMYSTEW 78
Query: 58 IFK-----ILAATNETICQLLDLPFSDGRTTEKK-----------EKEIPLLYFPPSGSG 101
+ + AAT E+ L + + + IPL+ +
Sbjct: 79 LLTGNGPMLKAATQESQVT-AQLSTPTAKDRIPEAFRCLDALHFTHELIPLV--SQKAAA 135
Query: 102 GFFD-SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--- 157
GF + + +P+ R H D + SM P Y GDI+
Sbjct: 136 GFGNADFAITESDVKEYYVIPKWRRQH--------VDFMIEVTGDSMQPKYNAGDIVGCT 187
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
I++++ + +I R ++ K L+ S+ +S N YP + +I IA
Sbjct: 188 IIHNSGFIQWNRPHVIATREQGLLIKRLMPGTTANSLSAVSENIQYPPFDIPKDEITGIA 247
Query: 217 RIL 219
++
Sbjct: 248 LVI 250
>gi|254421027|ref|ZP_05034751.1| LexA repressor [Brevundimonas sp. BAL3]
gi|196187204|gb|EDX82180.1| LexA repressor [Brevundimonas sp. BAL3]
Length = 233
Score = 41.8 bits (97), Expect = 0.072, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 25/146 (17%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
P + +E+PLL +G+ + ++ + VPE Y +
Sbjct: 94 GAPRPAAVSAANDTRELPLLGKIAAGT------PIAAIQHEQERLSVPESMLGKGDHYLL 147
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD-----RLLIKPRTGDIVAKVLIS 187
+ + SM GD+++ + GD +++ G+ +
Sbjct: 148 E-------IEGDSMIEAGILNGDLVV------IRRGDTANNGEIVVALVEGEEATLKRLR 194
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIE 213
R+G SI L N Y +E
Sbjct: 195 RKGGSIALEPANRNYETRIFGPDQVE 220
>gi|300925164|ref|ZP_07141074.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
gi|300418694|gb|EFK02005.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
Length = 79
Score = 41.8 bits (97), Expect = 0.073, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
P + G +++++ V GD + + + K LI G+ L LN YP
Sbjct: 1 PSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 54
>gi|118589993|ref|ZP_01547397.1| LexA repressor [Stappia aggregata IAM 12614]
gi|118437490|gb|EAV44127.1| LexA repressor [Stappia aggregata IAM 12614]
Length = 236
Score = 41.8 bits (97), Expect = 0.073, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---KWNTVGVPEIRSPHNGIYAIQTQ 136
G+ K P++ G + P +++ VP+ YA++
Sbjct: 96 GKPEPAKAAPEPVIGVTEVPVMGRI-AAGVPIEAIQTHSHSITVPQDLIGRGEHYALE-- 152
Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ SM GD +++ + GD ++ + K L + SI L
Sbjct: 153 -----VRGDSMIEAGILDGDTVLIRRTDSADSGDIVVALVDDEEATLKRLRKKGA-SIAL 206
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
+ N Y + R++
Sbjct: 207 EAANPAYETRIFGPGRVRVQGRLV 230
>gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D
str. JGS1721]
gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D
str. JGS1721]
Length = 342
Score = 41.8 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL---IS 187
++ SM LY G+++I+ V GD ++I G+ K
Sbjct: 240 FSSAYDYFALTINGDSMNKLYEDGEVIIVRKQNYVRNGD-IIIACILGEATCKEYYFNED 298
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI 212
+ S N + +I
Sbjct: 299 EDKHELIPHSTNPKHKPQFYSDDEI 323
>gi|325127686|gb|EGC50599.1| putative transcriptional regulator [Neisseria meningitidis N1568]
Length = 202
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 16 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 69
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 70 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGD 129
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSD 211
+++N D L + +++ K L G I+++S N YP + D
Sbjct: 130 SILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDD 188
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 189 VEIIGRVEW 197
>gi|324114222|gb|EGC08195.1| peptidase S24 [Escherichia fergusonii B253]
gi|325497678|gb|EGC95537.1| DNA polymerase V subunit UmuD [Escherichia fergusonii ECD227]
Length = 139
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + + K SM GD+L+++SAI
Sbjct: 23 PCGFPSPAA-DYVE--QRIDLNQLVIQHPSATYFVKAAGDSMIEAGIGDGDLLVVDSAIT 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ GD ++I G+ K L R S+ L+ +N Y T+ +
Sbjct: 80 ASHGD-IVIAAVDGEFTVKRLQLRP--SVQLVPMNSAYSPITLGSEE 123
>gi|308388740|gb|ADO31060.1| putative transcriptional regulator [Neisseria meningitidis
alpha710]
gi|325129691|gb|EGC52504.1| putative transcriptional regulator [Neisseria meningitidis
OX99.30304]
Length = 228
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 95
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 96 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYITRDTKNLSVISVKGDSMEGVLNDGD 155
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSD 211
+++N D L + +++ K L G I+++S N YP + D
Sbjct: 156 SILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDD 214
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 215 VEIIGRVEW 223
>gi|304388214|ref|ZP_07370335.1| probable transcriptional regulator, repressor [Neisseria
meningitidis ATCC 13091]
gi|304337825|gb|EFM03973.1| probable transcriptional regulator, repressor [Neisseria
meningitidis ATCC 13091]
Length = 236
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 50 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 103
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 104 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGD 163
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSD 211
+++N D L + +++ K L G I+++S N YP + D
Sbjct: 164 SILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDD 222
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 223 VEIIGRVEW 231
>gi|255252724|ref|YP_003090259.1| cI major repressor protein [Salmonella phage c341]
gi|223697697|gb|ACN18321.1| cI major repressor protein [Salmonella phage g341c]
Length = 224
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 48 GRNRWPSTESIFKILAATNETICQL-----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
GR R PS + I I T + + S + K + E P + G
Sbjct: 45 GR-RNPSIQEIGAIFQYLGVTDVRFNADGTFSVGESTEQKPVKPQFEYPFFSHVQA---G 100
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
F + + + + + ++ + S P + +G +++++
Sbjct: 101 MFTPEFRTFTERDAECWISTTKKASDSSFWLEVEGHSMTAPAGS-RPSFPEGMLILVDPE 159
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+ V+ GD + + + K LI G+ L LN +P
Sbjct: 160 VPVDPGDFCIARLCGDEFTFKKLIKDSGQVF-LQPLNPQFP 199
>gi|221328664|ref|YP_002533506.1| Repressor [Salmonella phage epsilon34]
gi|193244732|gb|ACF16671.1| Repressor [Salmonella phage epsilon34]
Length = 212
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 48 GRNRWPSTESIFKILAATNETICQL-----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
GR R PS + I I T + + S + K + E P + G
Sbjct: 33 GR-RNPSIQEIGAIFQYLGVTDVRFNADGTFSVGESTEQKPVKPQFEYPFFSHVQA---G 88
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
F + + + + + ++ + S P + +G +++++
Sbjct: 89 MFTPEFRTFTERDAECWISTTKKASDSSFWLEVEGHSMTAPAGS-RPSFPEGMLILVDPE 147
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+ V+ GD + + + K LI G+ L LN +P
Sbjct: 148 VPVDPGDFCIARLCGDEFTFKKLIKDSGQVF-LQPLNPQFP 187
>gi|15676461|ref|NP_273600.1| putative repressor protein [Neisseria meningitidis MC58]
gi|7225782|gb|AAF40984.1| putative repressor protein [Neisseria meningitidis MC58]
gi|261393074|emb|CAX50669.1| putative transcriptional regulator [Neisseria meningitidis 8013]
gi|316985422|gb|EFV64370.1| peptidase S24-like family protein [Neisseria meningitidis H44/76]
gi|325139792|gb|EGC62325.1| putative transcriptional regulator [Neisseria meningitidis CU385]
gi|325200756|gb|ADY96211.1| putative transcriptional regulator [Neisseria meningitidis H44/76]
Length = 228
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 95
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 96 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGD 155
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSD 211
+++N D L + +++ K L G I+++S N YP + D
Sbjct: 156 SILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDD 214
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 215 VEIIGRVEW 223
>gi|161869489|ref|YP_001598656.1| transcriptional regulator [Neisseria meningitidis 053442]
gi|218767679|ref|YP_002342191.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
gi|254804438|ref|YP_003082659.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
gi|121051687|emb|CAM07990.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
gi|161595042|gb|ABX72702.1| transcriptional regulator [Neisseria meningitidis 053442]
gi|254667980|emb|CBA04278.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
gi|254671461|emb|CBA09000.1| peptidase, S24 family [Neisseria meningitidis alpha153]
gi|319409934|emb|CBY90261.1| putative transcriptional regulator [Neisseria meningitidis WUE
2594]
gi|325133929|gb|EGC56585.1| putative transcriptional regulator [Neisseria meningitidis M13399]
gi|325135854|gb|EGC58466.1| putative transcriptional regulator [Neisseria meningitidis M0579]
gi|325141783|gb|EGC64232.1| putative transcriptional regulator [Neisseria meningitidis
961-5945]
gi|325144058|gb|EGC66368.1| putative transcriptional regulator [Neisseria meningitidis
M01-240013]
gi|325197768|gb|ADY93224.1| putative transcriptional regulator [Neisseria meningitidis G2136]
gi|325202655|gb|ADY98109.1| putative transcriptional regulator [Neisseria meningitidis
M01-240149]
gi|325203646|gb|ADY99099.1| putative transcriptional regulator [Neisseria meningitidis
M01-240355]
gi|325206594|gb|ADZ02047.1| putative transcriptional regulator [Neisseria meningitidis
M04-240196]
gi|325207599|gb|ADZ03051.1| transcriptional regulator [Neisseria meningitidis NZ-05/33]
Length = 228
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 95
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 96 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGD 155
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSD 211
+++N D L + +++ K L G I+++S N YP + D
Sbjct: 156 SILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDD 214
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 215 VEIIGRVEW 223
>gi|330970607|gb|EGH70673.1| putative transcriptional regulator [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 283
Score = 41.8 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDI 156
FF G + R G +Q + SM P+ G
Sbjct: 150 FFKEVELSAGKGSEVMLETNGRMLRFGKRTLQKKGIDPNTAGCVPVHGNSMEPVLPDGST 209
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVE----MSD 211
+ +++A+ ++ G + KVL G + L S N +P + +
Sbjct: 210 VGVDTAVTAIQDGKMYAIDHDGQLRVKVLYRLPGSGLRLRSYNAEEHPDERYDGDYVRDH 269
Query: 212 IEWIARILWAS 222
I I ++ W S
Sbjct: 270 IRVIGKVFWYS 280
>gi|219870292|ref|YP_002474667.1| LexA repressor [Haemophilus parasuis SH0165]
gi|254809099|sp|B8F317|LEXA_HAEPS RecName: Full=LexA repressor
gi|219690496|gb|ACL31719.1| LexA repressor/SOS-response transcriptional repressors
(RecA-mediated autopeptidases) [Haemophilus parasuis
SH0165]
Length = 209
Score = 41.8 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 13/123 (10%)
Query: 105 DSGVFP------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
D P G + E P NG D K SM + GD+L
Sbjct: 79 DEEGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLL 138
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIE 213
++ V G +++ ++ K L + G I L N V+ +IE
Sbjct: 139 AVHKTKSVRNGQ-VVVARVDDEVTVKRLEKK-GDLIYLHPENDELEPIVVDPRQSYIEIE 196
Query: 214 WIA 216
IA
Sbjct: 197 GIA 199
>gi|297250710|ref|ZP_06864870.2| putative repressor protein [Neisseria polysaccharea ATCC 43768]
gi|296838118|gb|EFH22056.1| putative repressor protein [Neisseria polysaccharea ATCC 43768]
Length = 236
Score = 41.5 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 50 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 103
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 104 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGD 163
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSD 211
+++N D L + +++ K L G I+++S N YP + D
Sbjct: 164 SILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPTFEINLNDLTDD 222
Query: 212 IEWIARILW 220
+E I R+ W
Sbjct: 223 VEIIGRVEW 231
>gi|117676113|ref|YP_863689.1| putative prophage repressor [Shewanella sp. ANA-3]
gi|117614937|gb|ABK50390.1| putative prophage repressor [Shewanella sp. ANA-3]
Length = 244
Score = 41.5 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 133 IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ + + SM + GDILI++ + + GD ++I + V KVL R
Sbjct: 147 LVESTFVGRARGESMTGVGIHSGDILIVSRQLTPSSGD-VIIAMYNEEFVCKVLDLSNSR 205
Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
L+S N + ++ + D W ++ AS
Sbjct: 206 ---LLSANDDFEPVSIRLDDRFWCEGVVPAS 233
>gi|110633994|ref|YP_674202.1| LexA repressor [Mesorhizobium sp. BNC1]
gi|122965964|sp|Q11HT8|LEXA_MESSB RecName: Full=LexA repressor
gi|110284978|gb|ABG63037.1| SOS-response transcriptional repressor, LexA [Chelativorans sp.
BNC1]
Length = 236
Score = 41.5 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
++GVP YA++ + SM GD +I+ N GD ++
Sbjct: 135 SIGVPPDMITGGEHYALE-------VKGDSMIEAGIFDGDTVIIRQTQAANPGDIVVALV 187
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + SI L + N Y ++ R++
Sbjct: 188 DEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGRLV 230
>gi|218549260|ref|YP_002383051.1| DNA polymerase V subunit UmuD [Escherichia fergusonii ATCC 35469]
gi|218356801|emb|CAQ89429.1| DNA polymerase V, subunit D [Escherichia fergusonii ATCC 35469]
Length = 139
Score = 41.5 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
FP+ + V + + + + K SM GD+L+++SAI
Sbjct: 23 PCGFPSPAA-DYVE--QRIDLNQLVIQHPSATYFVKAAGDSMIEAGIGDGDLLVVDSAIT 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ GD ++I G+ K L R S+ L+ +N Y T+ +
Sbjct: 80 ASHGD-IVIAAVDGEFTVKRLQLRP--SVQLVPMNSSYSPITLGSEE 123
>gi|66395748|ref|YP_240112.1| ORF019 [Staphylococcus phage 37]
gi|62636171|gb|AAX91282.1| ORF019 [Staphylococcus phage 37]
Length = 208
Score = 41.5 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
++ K SM L+ GDI+I+ V G ++ + K + + I +
Sbjct: 117 EEFGLKVSGDSMDKLFDDGDIVIVEKDSAVENGQLGVVMINGYNATVKRVRYNGDQIILI 176
Query: 196 -MSLNCCY-PVDTVEMSDIEWIARILWASQ 223
S N + P E ++ I RI+ ASQ
Sbjct: 177 PESNNTNHYPQVYGENDEVIIIGRII-ASQ 205
>gi|332560550|ref|ZP_08414868.1| hypothetical protein RSWS8N_15929 [Rhodobacter sphaeroides WS8N]
gi|332274348|gb|EGJ19664.1| hypothetical protein RSWS8N_15929 [Rhodobacter sphaeroides WS8N]
Length = 212
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 24/168 (14%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
KI AA +I F + + +G+ + G+ V
Sbjct: 52 KIAAAFGVSIEDFFAGVFDRQP-------SVAVAGKVGAGAHVDLVDA-YAKGDGMYHVA 103
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----QVN-CGDRLLIK 174
P PH GI A++ + SMLPL+R G +L A V + +
Sbjct: 104 CPPQLKPH-GIVAVE-------VEGDSMLPLHRPGSVLFYTRAAAEGVPVEAVNSPCVCE 155
Query: 175 PRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
G KV+ + L+SLN + ++W A +L A
Sbjct: 156 DVDGRAWLKVVKIGSQEGTFSLLSLNPDSNN--MHGVRLKWAAPVLLA 201
>gi|291166068|gb|EFE28114.1| LexA repressor [Filifactor alocis ATCC 35896]
Length = 213
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 24/153 (15%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
R P+ ++ I + LL + ++K IP+L + P
Sbjct: 44 REPNATNLSNIADVLGVSTDYLLGY----SQEAKRKGVSIPILGKVVA---------GIP 90
Query: 111 TGNKWNTVGVPEIRSP---HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
+ EI +A+ K Q SM P +GDI+I+ V
Sbjct: 91 IEAVEEILDYEEITPELARTGTFFAL-------KIQGESMEPKLFEGDIVIIRQQNNVEN 143
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
G+ ++ D K +I I L N
Sbjct: 144 GEIAVVLVNRQDATVKQIIKHDNG-IFLNGFNP 175
>gi|118594372|ref|ZP_01551719.1| putative prophage repressor [Methylophilales bacterium HTCC2181]
gi|118440150|gb|EAV46777.1| putative prophage repressor [Methylophilales bacterium HTCC2181]
Length = 191
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
T + PL +F FP+ + V + ++ + A +
Sbjct: 56 TAPSELGSQPLAWFSHKV------PAGFPSPAD-DHVE--KRLDLNDYLIAQKEATFFVS 106
Query: 142 TQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ SM+ GDI+I++ + GD +++ G+ K L
Sbjct: 107 IKGDSMIDASIHDGDIVIVDRSKDAKIGD-IVLASIDGEFTVKTLAK 152
>gi|315058148|gb|ADT72477.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni S3]
Length = 209
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 20/194 (10%)
Query: 14 DRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A + +L +A++ G+ P +FN K + I L N +I
Sbjct: 12 DILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQ------ILNFLNERNISINY 65
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGI 130
+ + + +I LY + GG G + + E+
Sbjct: 66 FFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDCSELIMDEKLLN 116
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM PL + G I +++ +I R G + K ++ +
Sbjct: 117 FFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 175
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 176 GVI-LHSLNPLYKD 188
>gi|311107821|ref|YP_003980674.1| peptidase S24-like family protein [Achromobacter xylosoxidans A8]
gi|310762510|gb|ADP17959.1| peptidase S24-like family protein [Achromobacter xylosoxidans A8]
Length = 367
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVLISR--RGRSIDLMS 197
SM P+ R G L++ + D + G ++ K + G+ + S
Sbjct: 269 GDSMEPVIRDGAALLVVPNESLTLQDIAAGGVYAINYDGKMIVKTVARERLTGQWVA-RS 327
Query: 198 LNCCYPVDTVEM-SDIEWIARILWA 221
N + +E + + + R++WA
Sbjct: 328 FNSLHDDIPLENGASVRVLGRVVWA 352
>gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM
30120]
gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM
30120]
Length = 236
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 16/156 (10%)
Query: 56 ESIFKILAATNETICQLLDL-----------PFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
E+ K+ A ++ L + PLL +G+ F
Sbjct: 59 ENAVKLAEALEVSVDDFSPLLAKEIRRMFNSVSEQKIVSNGDRYMYPLLTKVQAGT---F 115
Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
K +P + + + ++ + P + +G +++++
Sbjct: 116 TENSNSYTEKDAYAWIPTAKKASDSAFWLEVEGHSMTAPQGG-RPSFPEGMLILIDPKEP 174
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
VN GD + K + K LI G++ L LN
Sbjct: 175 VNVGDFCIAKLNGNEFTFKKLIRESGQTF-LEPLNP 209
>gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94]
gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94]
Length = 218
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-----SKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ LT LA+KAG+ + +K +K F + ++FK+ AA + Q
Sbjct: 13 QKAGLTQDALAKKAGITRVAISKAEQGLTKSFNGD---------TLFKVAAALGCS-PQW 62
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L + E K P S + + + + H+ YA
Sbjct: 63 LQNGDEKDKHWENNVKSCPQRDTAHSYPVINWVQAGLFATSGDDYNMYDQDNWRHSVKYA 122
Query: 133 IQTQDTRHKTQDTSML-PL---YRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLIS 187
+ + SM P+ + +G +++N +V G ++ + ++ + K IS
Sbjct: 123 GER-GFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEATFKKYIS 181
Query: 188 RRGRSIDLMSLNCCYP 203
G++ L LN YP
Sbjct: 182 DMGKAF-LKPLNPQYP 196
>gi|158341487|ref|YP_001522652.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
MBIC11017]
gi|158311728|gb|ABW33338.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
MBIC11017]
Length = 143
Score = 41.5 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH--------NGIYAIQTQDTRHKTQDTSMLP--LYRKG 154
D P + + G P H + + + + SM ++ G
Sbjct: 13 DPVCLPIFSAPVSAGFPSPADDHLQKNLNLQDALIPRPAATFLMRVEGDSMEGCGIF-SG 71
Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
D+L+++ +I G ++I G+ K L + I L + N YP TV+
Sbjct: 72 DLLVVDRSIDPVDG-AVVIAVLEGEFTVKRL-RKTQGKILLTAENPDYPPITVQRG 125
>gi|71736633|ref|YP_274867.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557186|gb|AAZ36397.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320324029|gb|EFW80112.1| LexA repressor [Pseudomonas syringae pv. glycinea str. B076]
gi|320329027|gb|EFW85026.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4]
Length = 205
Score = 41.5 bits (96), Expect = 0.081, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLD----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ + EIP+L +G+ P
Sbjct: 44 SVARKHIMALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRVAAGA---------P 94
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 95 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 150
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L + L+ N Y V
Sbjct: 151 IVVARL-DGEVTIKRLHR-SADQVRLLPRNPAYEPIIVTPDQ 190
>gi|156932314|ref|YP_001436230.1| LexA repressor [Cronobacter sakazakii ATCC BAA-894]
gi|166224568|sp|A7MPP3|LEXA_ENTS8 RecName: Full=LexA repressor
gi|156530568|gb|ABU75394.1| hypothetical protein ESA_00089 [Cronobacter sakazakii ATCC BAA-894]
Length = 202
Score = 41.5 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFKPIVVDLRE 183
>gi|37676526|ref|NP_936922.1| hypothetical protein VVA0866 [Vibrio vulnificus YJ016]
gi|37201068|dbj|BAC96892.1| hypothetical protein [Vibrio vulnificus YJ016]
Length = 214
Score = 41.5 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSL 198
K + P + G+ ++L+ + GD + I + +++ K L + RG + +
Sbjct: 124 IKVNGEGLFPRIKHGESIVLSRTAEPTPGDDVAIWLKETNELMIKTLTADRGGHYQVFDV 183
Query: 199 NCCYPVDTVEMSDI 212
N +T++ DI
Sbjct: 184 NNASRPETIQKDDI 197
>gi|332290413|ref|YP_004421265.1| LexA repressor [Gallibacterium anatis UMN179]
gi|330433309|gb|AEC18368.1| LexA repressor [Gallibacterium anatis UMN179]
Length = 206
Score = 41.5 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNK 114
K+L T T + L + ++ T KE+ L G D G+
Sbjct: 25 AKLLKVTVSTFSERLAIEIAEMAKTIDKEEIALLASTKNEGEKIIIDVLNVEASAGNGSV 84
Query: 115 WNTVGVPE-IRSPHNGIYAI-----QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
+ V V + Y + + SM P + GD++ ++ Q G
Sbjct: 85 GDLVEVVSRLYYVPEQYYTLFRGINPEGLRVINIKGDSMAPTFNSGDMIFVDINTQTFEG 144
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
D + I + K L + + L S N Y
Sbjct: 145 DGVYIFNYNNSLYVKRLQRAGEKFLVL-SDNPTY 177
>gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619]
gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619]
Length = 259
Score = 41.5 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
Q SM P+ G + +N Q+ G IK G + KVL G +
Sbjct: 164 QAVCVVVSGNSMEPVLPDGSTVGVNIGQTQIVDGKMYAIK-HDGQLRVKVLYRVPGGGVR 222
Query: 195 LMSLN-CCYPVDTVEMSD-----IEWIARILW 220
S N +P +T + IE I R+ W
Sbjct: 223 FRSFNQSEHPDETYTADEMAEKSIEIIGRVFW 254
>gi|222148888|ref|YP_002549845.1| LexA repressor [Agrobacterium vitis S4]
gi|254809084|sp|B9JX59|LEXA_AGRVS RecName: Full=LexA repressor
gi|221735874|gb|ACM36837.1| LexA repressor [Agrobacterium vitis S4]
Length = 239
Score = 41.5 bits (96), Expect = 0.086, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM GD +I+ +A N GD ++
Sbjct: 137 DISVPMEMLGSGEHYALE-------VKGDSMIEAGILDGDTVIIRNATTANPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L + N Y +
Sbjct: 190 DDEEATLKRFRRRGA-SIALEAANPAYETRIFGPDRV 225
>gi|329113360|ref|ZP_08242141.1| LexA repressor [Acetobacter pomorum DM001]
gi|326697185|gb|EGE48845.1| LexA repressor [Acetobacter pomorum DM001]
Length = 220
Score = 41.5 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ L + ++ +LP + R + + K IPL + P
Sbjct: 65 ARALEV--IQLPEMQELPPNVVRASFTRPKAETVRIPLYGRIAA---------GLPIEAV 113
Query: 115 WNT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
+T + VP YA++ SM+ GD +I+ Q G
Sbjct: 114 PDTSHVLTVPTEMLGTGDYYALE-------VAGDSMVDAGILDGDNVIIRRTDQAENGQI 166
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
++ ++ K L + G I L N Y V +
Sbjct: 167 VVALIDEHEVTLKRLRRK-GNMIALEPANSSYETRIVPAEKL 207
>gi|317058133|ref|ZP_07922618.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313683809|gb|EFS20644.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 345
Score = 41.5 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRT-GDIVAKVLISRRG 190
I + SM GDI+I+ ++VN GD + + + GD V K L + G
Sbjct: 218 IDGDIIGIRVSGDSMEKTIYDGDIVIVKKDVEVNIGDIGVFLLNKEFGDGVVKRLAKKNG 277
Query: 191 RSIDLMSLNCCYPVDTVEMSDI 212
+ L S N Y ++ S++
Sbjct: 278 VFV-LESDNPYYKPIEIKSSEV 298
>gi|310779490|ref|YP_003967823.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
2926]
gi|309748813|gb|ADO83475.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
2926]
Length = 232
Score = 41.5 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 32/132 (24%)
Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
K IP+ +G G D G + + +P I++ ++A+ SM
Sbjct: 110 KGIPVYERISAGIGAIND------GEVTDYLSIPGIKNAQE-VFAVN-------VWGDSM 155
Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL--------ISRRGRSIDLMSLN 199
P + G ++I +++ G+I A +L I + + LMS N
Sbjct: 156 EPNIKDGSVIICRKDVEIR----------DGEIGAFLLNDEAYVKRIKVTNQYVALMSDN 205
Query: 200 CCYPVDTVEMSD 211
YP + +
Sbjct: 206 PNYPPIFIGPGE 217
>gi|257451561|ref|ZP_05616860.1| transcriptional regulator, XRE family protein [Fusobacterium sp.
3_1_5R]
Length = 342
Score = 41.5 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRT-GDIVAKVLISRRG 190
I + SM GDI+I+ ++VN GD + + + GD V K L + G
Sbjct: 215 IDGDIIGIRVSGDSMEKTIYDGDIVIVKKDVEVNIGDIGVFLLNKEFGDGVVKRLAKKNG 274
Query: 191 RSIDLMSLNCCYPVDTVEMSDI 212
+ L S N Y ++ S++
Sbjct: 275 VFV-LESDNPYYKPIEIKSSEV 295
>gi|227535713|ref|ZP_03965762.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227186680|gb|EEI66747.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 257
Score = 41.5 bits (96), Expect = 0.088, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
+G G F D P +TV +P+ P + Y K SM P Y
Sbjct: 129 GIVAAGYGAFNDDRDEPM----DTVKIPDSAIPSHYDYC-------FKVVGDSMHPTYDD 177
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
G+ + + V G ++ + K++ + + L SLN
Sbjct: 178 GEFVFVQKTQDVTNGMIAVVDIDDMTFIKKLIFEQ--DRLCLRSLNDD 223
>gi|282861056|ref|ZP_06270121.1| putative phage repressor [Streptomyces sp. ACTE]
gi|282563714|gb|EFB69251.1| putative phage repressor [Streptomyces sp. ACTE]
Length = 145
Score = 41.5 bits (96), Expect = 0.089, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ G A++ + SM+P + GD L++ +V GD ++++
Sbjct: 2 PELTQEPGGGRAVRRPFQVVEVTGPSMVPTFYHGDWLLVQYGARVRPGDVVILR 55
>gi|330939437|gb|EGH42793.1| putative transcriptional regulator [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 271
Score = 41.5 bits (96), Expect = 0.090, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 18/177 (10%)
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-------PPSGSGGFFDSGVFPTGNKWN 116
L DG + IP+ + P FF G
Sbjct: 92 VVGAPFSMDLQEGDLDGPPSASAHALIPIEEWDDKTPLDPDEVELPFFKEVELSAGKGSE 151
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
+ R G +Q + SM P+ G + +++A+ +
Sbjct: 152 VMLETNGRMLRFGKRTLQKKGIDPNTAGCVPVHGNSMEPVLPDGSTVGVDTAVTAIQDGK 211
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVE----MSDIEWIARILWAS 222
+ G + KVL G + L S N +P + + I I ++ W S
Sbjct: 212 MYAIDHDGQLRVKVLYRLPGSGLRLRSYNAEEHPDERYDGDYVRDHIRVIGKVFWYS 268
>gi|195953192|ref|YP_002121482.1| putative phage repressor [Hydrogenobaculum sp. Y04AAS1]
gi|195932804|gb|ACG57504.1| putative phage repressor [Hydrogenobaculum sp. Y04AAS1]
Length = 205
Score = 41.5 bits (96), Expect = 0.090, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 30/206 (14%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS---TESIFKILAATNETICQLLD 74
E ++ LA+ G D SF + G+ P ESI K L + LL+
Sbjct: 12 ESKGISRRELAKMMGKDEVSFEQYLYKLESGKILNPGIELVESISKAL---GISPKDLLE 68
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
G IP++ +G+G + V +I
Sbjct: 69 KQEEHGDIETVF--AIPIVDV-KAGAGNPL--------YAEEYIYVNDIIPSRYL----- 112
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ K + SM P+ + G+ +I++++ + G +I + G ++ + +
Sbjct: 113 ---SAIKIKGDSMEPIIKDGEYVIIDTSSKDIINGKIYVISDKDGGLLVRRIYKLNDGFF 169
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L+ N Y V+ SDI RI+
Sbjct: 170 RLLPENEAYKSQDVKASDI----RII 191
>gi|116667752|pdb|2HO0|A Chain A, Structure Of A Hyper-Cleavable Monomeric Fragment Of Phage
Lambda Repressor Containing The Cleavage Site Region
Length = 133
Score = 41.5 bits (96), Expect = 0.090, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSML-PL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + K LI
Sbjct: 43 SAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 102
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 103 GQVF-LQPLNPQYP 115
>gi|120537133|ref|YP_957190.1| putative prophage repressor [Marinobacter aquaeolei VT8]
gi|120326968|gb|ABM21275.1| UmuD protein. Serine peptidase. MEROPS family S24 [Marinobacter
aquaeolei VT8]
Length = 142
Score = 41.5 bits (96), Expect = 0.090, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 103 FFDSG---VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
FF FP+ + + + S + + +SM GD+L+
Sbjct: 19 FFSDAVKAGFPS-PAQDYIE--KTLSLDDLCIRTPAATYFVRASGSSMERAGIHDGDVLV 75
Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ ++ +++I G+ V K L L + + YP T+ D
Sbjct: 76 VDRSLPP-GHRKIVIASVDGEFVCKRLDLSVPSRPVLRAESEDYPDITLREED 127
>gi|300713283|ref|YP_003739322.1| DNA polymerase V subunit [Erwinia billingiae Eb661]
gi|299060354|emb|CAX53604.1| DNA polymerase V subunit [Erwinia billingiae Eb661]
Length = 142
Score = 41.5 bits (96), Expect = 0.093, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + V + + + SM + GD+++++ + +
Sbjct: 26 AAGFPSPAA-DYVE--AALDLNELCIRHRAATYFVRASGNSMTDAGIKDGDLMVVDKSEK 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ GD ++I G+ KVL R + L +N +P + +E + W
Sbjct: 83 PSHGD-IVIAAVDGEFTVKVLQLRP--RLALQPMNPAFPTIYPDPDALEIFGVVTW 135
>gi|332853417|ref|ZP_08434736.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
gi|332870600|ref|ZP_08439342.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
gi|332728623|gb|EGJ59991.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
gi|332732160|gb|EGJ63429.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
Length = 263
Score = 41.5 bits (96), Expect = 0.094, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ + +P++ + +GS F + +P R YA+ K
Sbjct: 127 EGRRVPVISWVAAGS---FTPIETVLKDTEIEEYLPPNRRCGKNGYAL-------KVVGY 176
Query: 146 SMLPLYRKGDILILNSAIQ---VNCGDRLLI-KPRTGDIVAKVLI---SRRGRSIDLMSL 198
SM P + GD + +N IQ + D +++ + K LI + ++ L
Sbjct: 177 SMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVACAGDSEATFKKLIIEGEGTSKFLE--PL 234
Query: 199 NCCYPVDTVEMSD 211
N +P +++S+
Sbjct: 235 NSDWPDKIIKLSE 247
>gi|33339176|gb|AAQ14269.1|AF251128_1 LexA [Sinorhizobium meliloti]
Length = 238
Score = 41.5 bits (96), Expect = 0.094, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM GD +I+ + + GD ++
Sbjct: 136 DISVPVEMIGSGEHYALE-------IKGDSMIEAGILDGDTVIIRNGSTASPGDIVVALI 188
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K R SI L + N Y ++ R++
Sbjct: 189 DDEEATLKRFRRRGA-SIALEAANPAYETRIFGPDRVKIKGRLV 231
>gi|78356205|ref|YP_387654.1| transcriptional regulator [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218610|gb|ABB37959.1| transcriptional regulator, putative [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 270
Score = 41.5 bits (96), Expect = 0.094, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ + SM P GD +++N D++ + +I K +
Sbjct: 175 SSLRLMEVMGRSMEPTLHNGDDVLVNEGDTYLVEDKVYVVRVQDEIYIKRFAR-TPGRLL 233
Query: 195 LMSLNCC--YPVDTVEMSDI--EW--IARILWA 221
N Y ++ D+ +W I R++WA
Sbjct: 234 FRGDNRDLAYQDIEIDPQDVSCDWTVIGRVIWA 266
>gi|240124036|ref|ZP_04736992.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae PID332]
gi|268682662|ref|ZP_06149524.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|268622946|gb|EEZ55346.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
Length = 228
Score = 41.5 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N D L + +++ K L G I+++S N
Sbjct: 140 ISVKGDSMEGVLNDGDSILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISAN 198
Query: 200 CCYPVDTVE----MSDIEWIARILW 220
YP + D+E I R+ W
Sbjct: 199 EAYPAFEINLNDLTDDVEIIGRVEW 223
>gi|242280573|ref|YP_002992702.1| phage repressor [Desulfovibrio salexigens DSM 2638]
gi|242123467|gb|ACS81163.1| putative phage repressor [Desulfovibrio salexigens DSM 2638]
Length = 218
Score = 41.5 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 17/215 (7%)
Query: 14 DRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+R+ E +++ LAR+ G+ + + K+ G RW S+ L +T +
Sbjct: 11 ERLKEHTDISTQAQLARELGVGRAAVSLVKKKGAVP-PRWILELSVRYNLDST--WLESG 67
Query: 73 LDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
L P + E + IP + S GG F++G G R G
Sbjct: 68 LGSPRPEVNAVEFADEFSRIPKVAARLSAGGGSFETGG-------EIEGFYAFRKDWIGG 120
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P ++GDI++L+ + + + ++ K + R G
Sbjct: 121 KGNPSDMVLMEVYGNSMEPELKEGDIVLLDQSRKDILAGGIYAVGVEDTVMVKRVEKRPG 180
Query: 191 RSIDLMSLNCCYPVDTV---EMSDIEWIARILWAS 222
+ + L S N Y + E+ ++ + +++W S
Sbjct: 181 QVV-LHSDNKDYAPIYLGGDELENVRVLGQVVWVS 214
>gi|194099219|ref|YP_002002310.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae NCCP11945]
gi|239999505|ref|ZP_04719429.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae 35/02]
gi|240014682|ref|ZP_04721595.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae DGI18]
gi|240017129|ref|ZP_04723669.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae FA6140]
gi|240081233|ref|ZP_04725776.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae FA19]
gi|240113444|ref|ZP_04727934.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae MS11]
gi|240116210|ref|ZP_04730272.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae PID18]
gi|240118494|ref|ZP_04732556.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae PID1]
gi|240121204|ref|ZP_04734166.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae PID24-1]
gi|240126341|ref|ZP_04739227.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae SK-92-679]
gi|240128702|ref|ZP_04741363.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae SK-93-1035]
gi|254494221|ref|ZP_05107392.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
gi|260439977|ref|ZP_05793793.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae DGI2]
gi|268595316|ref|ZP_06129483.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
gi|268597344|ref|ZP_06131511.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
gi|268599518|ref|ZP_06133685.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|268601872|ref|ZP_06136039.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|268604203|ref|ZP_06138370.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|268684927|ref|ZP_06151789.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
gi|268687089|ref|ZP_06153951.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|291043265|ref|ZP_06568988.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293398584|ref|ZP_06642762.1| transcriptional regulator, repressor [Neisseria gonorrhoeae F62]
gi|193934509|gb|ACF30333.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae NCCP11945]
gi|226513261|gb|EEH62606.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
gi|268548705|gb|EEZ44123.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
gi|268551132|gb|EEZ46151.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
gi|268583649|gb|EEZ48325.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|268586003|gb|EEZ50679.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|268588334|gb|EEZ53010.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|268625211|gb|EEZ57611.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
gi|268627373|gb|EEZ59773.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|291012871|gb|EFE04854.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291611055|gb|EFF40152.1| transcriptional regulator, repressor [Neisseria gonorrhoeae F62]
gi|317164754|gb|ADV08295.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 228
Score = 41.5 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N D L + +++ K L G I+++S N
Sbjct: 140 ISVKGDSMEGVLNDGDSILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISAN 198
Query: 200 CCYPVDTVE----MSDIEWIARILW 220
YP + D+E I R+ W
Sbjct: 199 EAYPAFEINLNDLTDDVEIIGRVEW 223
>gi|70728592|ref|YP_258341.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
Pf-5]
gi|68342891|gb|AAY90497.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
Pf-5]
Length = 248
Score = 41.5 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 29/235 (12%)
Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
M S + + + + +R ++P+ L R+ G+ ++ ++ + G+ PS + I +
Sbjct: 1 MRSMQIRNVSTVLRELLDRDGISPTELHRRTGVPQSTLSR----ILSGKIVDPSDKHISR 56
Query: 61 ILAATNETICQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGG--------FFDSGV 108
I + QL + E+ + + F
Sbjct: 57 IAEYFQVSTDQLRGRVDIAPARAAAPRGEIHSELKDISLWDDDTPVDDDEVSVPFLREVE 116
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSA 162
G+ + E S G +++ + + SMLP+ R G + +N+
Sbjct: 117 LAAGSGRFVIEESERASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAG 176
Query: 163 ----IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI 212
+ GD L G + K L I L S N +P + +I
Sbjct: 177 KCAIGDIVDGD-LYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYSFQEI 229
>gi|59801770|ref|YP_208482.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae FA 1090]
gi|59718665|gb|AAW90070.1| putative transcriptional regulator, repressor [Neisseria
gonorrhoeae FA 1090]
Length = 236
Score = 41.5 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N D L + +++ K L G I+++S N
Sbjct: 148 ISVKGDSMEGVLNDGDSILVNHGENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISAN 206
Query: 200 CCYPVDTVE----MSDIEWIARILW 220
YP + D+E I R+ W
Sbjct: 207 EAYPAFEINLNDLTDDVEIIGRVEW 231
>gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
11568]
gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
11568]
Length = 188
Score = 41.5 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFN--KSKRFGIEGRNRWPSTESIFKILAATNETIC 70
+ + +R L+ LARKAG+ ++ + +S R PS S+ ++L A ++
Sbjct: 16 LRALRDRLGLSQRALARKAGVPSSTVSLVESGRTS-------PSVGSLKRLLDAAGISLG 68
Query: 71 QLLD 74
Sbjct: 69 DFFS 72
>gi|281357786|ref|ZP_06244272.1| signal peptidase I [Victivallis vadensis ATCC BAA-548]
gi|281315733|gb|EFA99760.1| signal peptidase I [Victivallis vadensis ATCC BAA-548]
Length = 152
Score = 41.5 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 140 HKTQDTSMLPLYRKGDILI-LNS----AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM+P YR G +L+ + + G +++ G+ + K + + G +
Sbjct: 23 IRVTGGSMMPTYRDGQLLVGVKAFWLRGEPFRRG-EVVMCRVGGEKLLKRIYALPGDEVV 81
Query: 195 LMSLNCCYPV--------DTVEMSDIEWIARI 218
+ SL+ + V ++++ ARI
Sbjct: 82 IFSLDDGFHVMVQAENYLRYYQLAEGIGHARI 113
>gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987]
gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987]
Length = 340
Score = 41.5 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL---ISRRGRS 192
SM LY G+++I+ GD ++I G+ K
Sbjct: 245 DYFALTINGDSMNKLYEDGEVIIVRKQNYARNGD-IIIACILGEATCKEYYFNKDDDKNE 303
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
+ S N + + +I
Sbjct: 304 LIPHSTNPKHKPKSYSNDEI 323
>gi|330829454|ref|YP_004392406.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
veronii B565]
gi|328804590|gb|AEB49789.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
veronii B565]
Length = 248
Score = 41.5 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 144 DTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P GD ++++ S Q+ G +++ ++ AK L I ++S N
Sbjct: 162 GDSMEPTIHSGDSILVDISKNQIEDGSIFVLRLGE-ELYAKRLQKNFDGGITIISDNRDD 220
Query: 202 YPVDTVEMSDIEWIA---RILWA 221
YP+ V + +E +A +++WA
Sbjct: 221 YPLQVVPANQLENLAVIGKVVWA 243
>gi|330828944|ref|YP_004391896.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
veronii B565]
gi|328804080|gb|AEB49279.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
veronii B565]
Length = 248
Score = 41.5 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 144 DTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P GD ++++ S Q+ G +++ ++ AK L I ++S N
Sbjct: 162 GDSMEPTIHSGDSILVDISKNQIEDGSIFVLRLGE-ELYAKRLQKNFDGGITIISDNRDD 220
Query: 202 YPVDTVEMSDIEWIA---RILWA 221
YP+ V + +E +A +++WA
Sbjct: 221 YPLQVVPANQLENLAVIGKVVWA 243
>gi|89885828|ref|YP_516026.1| putative prophage repressor [Rhodoferax ferrireducens T118]
gi|89347826|gb|ABD72028.1| putative prophage repressor [Rhodoferax ferrireducens T118]
Length = 146
Score = 41.5 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 107 GVFPTGN---KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSA 162
FP+ + + ++ H + SM GDIL+++ A
Sbjct: 29 AGFPSPAEDLGAQRIDLTQLLVTH------PQATYFLRASGQSMIEAGIFDGDILVVDRA 82
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
I+ G ++I GD K L R+GR I L + N +
Sbjct: 83 IKPRHG-HIVIAILDGDFTVKQLHQRQGR-IKLKAANPTFAE 122
>gi|325136532|gb|EGC59136.1| hypothetical protein NMBM0579_0800 [Neisseria meningitidis M0579]
gi|325198559|gb|ADY94015.1| hypothetical protein NMBG2136_1316 [Neisseria meningitidis G2136]
Length = 292
Score = 41.1 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 142 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 192
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
DTSM P+ KGD++++ ++ D +LI+ +V L
Sbjct: 193 ----AMPDTSMSPVIEKGDLVVVEPRMRPADEDIVLIELSDKRLVVAHL 237
>gi|317405210|gb|EFV85549.1| LexA repressor [Achromobacter xylosoxidans C54]
Length = 216
Score = 41.1 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRLLIKPRTGDIV 181
+ ++A Q D K + SM R GD+L + A + G ++ + D+
Sbjct: 116 DSSLFA-QAPDYLLKVRGMSM----RDAGILEGDLLAVKKASEARNGQIVVARLGD-DVT 169
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
K L + GR I+L+ N + V VE
Sbjct: 170 VKRLQRQNGR-IELLPENPDFNVIVVEADQ 198
>gi|320008611|gb|ADW03461.1| nickel-type superoxide dismutase maturation protease [Streptomyces
flavogriseus ATCC 33331]
Length = 145
Score = 41.1 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE A + + SM+P GD+L++ V GD ++++
Sbjct: 2 PEPAEEPWSGRAARRPFQVVEVTGPSMVPTLYHGDLLLVQRGAPVRPGDVVILR 55
>gi|117926640|ref|YP_867257.1| phage repressor [Magnetococcus sp. MC-1]
gi|117610396|gb|ABK45851.1| putative phage repressor [Magnetococcus sp. MC-1]
Length = 215
Score = 41.1 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 9/129 (6%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G GG D + + SM P R GD
Sbjct: 89 ASAGHGGAIDEE-----PIVEKLAFKSDWIIGEMGLDSERLAL-INVHGDSMEPTLRGGD 142
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDI 212
+L+L+ D + + ++ K +I + S N Y + + +
Sbjct: 143 MLLLDLRRVEVRDDAIYVLRLENHLIVKRAQRMLDGTILIRSDNPIYKEQSASPEQARQL 202
Query: 213 EWIARILWA 221
I R++W
Sbjct: 203 CVIGRVVWV 211
>gi|330880639|gb|EGH14788.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4]
Length = 202
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLD----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ + EIP+L +G+ P
Sbjct: 41 SVARKHIMALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRVAAGA---------P 91
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 92 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 147
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L + L+ N Y V
Sbjct: 148 IVVARL-DGEVTIKRLHR-SADQVRLLPRNPAYEPIIVTPDQ 187
>gi|294790734|ref|ZP_06755892.1| UmuD protein [Scardovia inopinata F0304]
gi|294458631|gb|EFG26984.1| UmuD protein [Scardovia inopinata F0304]
Length = 146
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ S + + SM GDILI++ ++
Sbjct: 11 PAGFPSVA---QDYFDGDFSFDENVITHPDTTFVVRVSGDSMEGAGIFNGDILIVDKSLA 67
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
D ++I G++ K L+ L N YP + + +
Sbjct: 68 AEESD-IVIAAINGELTVKRLLLNTDNLPFLHPENRAYPDIPLYLEE 113
>gi|238023271|ref|ZP_04603697.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147]
gi|237865391|gb|EEP66531.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147]
Length = 214
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTR--HKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
W++ + + I + D SM P + GD+++++ ++ G+
Sbjct: 93 KNWDSTRIINHTETEYIMSEINHSEFAVAFNIIDDSMTPDFLVGDLIVIDPKVRPLPGEF 152
Query: 171 LLIKPRTGDIV----AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI-----ARI 218
+L + + A L +S L+ LN Y + +IE I RI
Sbjct: 153 VLARSGETTLFRKFKANELDLGNEQSFSLIPLNDDYASLSSSNHEIEIIGTMIEHRI 209
>gi|152969737|ref|YP_001334846.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238894236|ref|YP_002918970.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae NTUH-K2044]
gi|330007476|ref|ZP_08305957.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
gi|150954586|gb|ABR76616.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
complex with UmuC [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238546552|dbj|BAH62903.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328535458|gb|EGF61927.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
Length = 139
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 103 FFDS---GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
FF FP+ + V + + + + K SM+ +GD+L+
Sbjct: 17 FFADLVQCGFPS-PAQDYVE--KRIDLNELLVQHPSATYFVKAAGDSMIDAGIDEGDLLV 73
Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++SA + GD ++I G+ K L + L +N Y V +
Sbjct: 74 VDSARKAEHGD-IVIAAVGGEFTVKKLQLLP--RVQLNPMNPAYSPIVVGREE 123
>gi|91200971|emb|CAJ74028.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
Length = 191
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVL---ISRRGR 191
+ SM PL R+GD +++ Q+ GD + + IV +VL G
Sbjct: 27 EMFTIPIVGRSMYPLIREGDNVLVECGYSQIRRGDIIAFRSENKLIVHRVLTISEKGTGF 86
Query: 192 SIDLMSLNCCYPVDTVEMSDI 212
S N + V +I
Sbjct: 87 SFITKGDNVPHADPVVSHREI 107
>gi|327254477|gb|EGE66099.1| helix-turn-helix family protein [Escherichia coli STEC_7v]
Length = 237
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM P GD++ +N+ + G I + K LI S
Sbjct: 142 ERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSD-LLRVKTLI-ATPTS 199
Query: 193 IDLMSLNC-CYPVDTVEMSD----IEWIARILWAS 222
+ + S+N YP + ++ + + I R+ W+S
Sbjct: 200 VIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 234
>gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava
NJ9703]
gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava
NJ9703]
Length = 228
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CC 201
SM P++ G L +++ + ++ G + K+L + + S N
Sbjct: 145 DGDSMEPVFPSGATLGIDTGSKNIRDGQIYAINHGGLLRTKILHKLPENKVRIRSYNQSE 204
Query: 202 YPVDTVEMSDIEWIARILWAS 222
YP + + D+ I R+ W S
Sbjct: 205 YPDEEASLDDLSVIGRVFWWS 225
>gi|222085871|ref|YP_002544402.1| LexA repressor [Agrobacterium radiobacter K84]
gi|254809083|sp|B9JEY4|LEXA_AGRRK RecName: Full=LexA repressor
gi|221723319|gb|ACM26475.1| LexA repressor [Agrobacterium radiobacter K84]
Length = 240
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ ++ N GD ++
Sbjct: 138 DITVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNSTTANPGDIVVALV 190
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 191 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 226
>gi|37528202|ref|NP_931547.1| LexA repressor [Photorhabdus luminescens subsp. laumondii TTO1]
gi|44888094|sp|Q7MZB8|LEXA_PHOLL RecName: Full=LexA repressor
gi|36787639|emb|CAE16746.1| LexA repressor [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 201
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 65 TNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWN 116
T I L + ++ I ++ G + P
Sbjct: 27 TRAEIAARLGFRSPNAAEEHLKALARKGVIEIVAGASRGIRLLLEESGLPLIGRVAAGEP 86
Query: 117 TVGVPEIRSPHNGIYAI--QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
+ I S + A+ + D + SM + GD+L ++ V G ++++
Sbjct: 87 LLAQEHIESHYQVDPALFKPSADFLLRVSGMSMKDVGIMDGDLLAVHKTQNVRNG-QIIV 145
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ K + G ++L++ N + V++ +
Sbjct: 146 ARIEDEVTVKRF-KQTGNKVELLAENPEFKPIEVDLRE 182
>gi|293392401|ref|ZP_06636723.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
4582]
gi|291425055|gb|EFE98262.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
4582]
Length = 228
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRT 177
P R + K S+LP+ GD + ++ + GD L R
Sbjct: 117 FPLRRDDLRRAGVSASNARIVKIWGNSLLPVLTNGDYVAVDTTHTQSIRDGD--LYAIRD 174
Query: 178 GDIV-AKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
G ++ K ++S + L S N YP + + ++ + I R+ W+S
Sbjct: 175 GVLLRVKTVVSLPDGGVILRSFNKEEYPDEVLSYNERKARVHVIGRVFWSS 225
>gi|255006786|ref|ZP_05145387.2| repressor-like protein [Staphylococcus aureus subsp. aureus
Mu50-omega]
Length = 238
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
I D K SM P+++ G+I+ + + G + V KV +
Sbjct: 152 IPPHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVED--DR 209
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y ++
Sbjct: 210 LTLVSLNKEYRDLHFYRNE 228
>gi|160896773|ref|YP_001562355.1| putative phage repressor [Delftia acidovorans SPH-1]
gi|160362357|gb|ABX33970.1| putative phage repressor [Delftia acidovorans SPH-1]
Length = 204
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCY 202
SM GDIL++N+++ D + + G+ K+L + ++S N Y
Sbjct: 119 GRSMADRINDGDILLVNTSVDTLTQDGVYVIELEGENYVKLLERDFSTGGVRIVSYNPAY 178
Query: 203 PVDTVE---MSDIEWIARILW 220
P +E + + R+LW
Sbjct: 179 PPQVLEGEAANRLRICGRVLW 199
>gi|15924988|ref|NP_372522.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50]
gi|156980315|ref|YP_001442574.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu3]
gi|282919844|ref|ZP_06327576.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427]
gi|14247771|dbj|BAB58160.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu50]
gi|156722450|dbj|BAF78867.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu3]
gi|282316482|gb|EFB46859.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427]
Length = 242
Score = 41.1 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
I D K SM P+++ G+I+ + + G + V KV +
Sbjct: 156 IPPHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVED--DR 213
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y ++
Sbjct: 214 LTLVSLNKEYRDLHFYRNE 232
>gi|330999680|ref|ZP_08323389.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
11859]
gi|329574186|gb|EGG55762.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
11859]
Length = 226
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV------PEIRSPHNGIYAIQTQDTRHK 141
K +P F+ S N + + P S + Y
Sbjct: 79 KTMPAANMVSIQQVDFYGSCGVGVMNFEDYPEIKTLQVTPAWFSRNFAFYN-PRDVKIIT 137
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P R GD + ++ + D + + G+ K + G+ I L+S N
Sbjct: 138 ALGDSMEPEIRDGDAVFIDITDKETLRDGIYLLVVDGEAYIKRVQKLIGKKIALLSTNKA 197
Query: 202 YPVDTVEMS---DIEWIARILWA 221
Y + + ++ I R++ +
Sbjct: 198 YKDIEISLDSDIEVRIIGRVIKS 220
>gi|319410673|emb|CBY91050.1| hypothetical protein NMAA_1137 [Neisseria meningitidis WUE 2594]
Length = 239
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 89 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 139
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
DTSM P+ KGD+L++ ++ D +LI+ +V L+ + +
Sbjct: 140 ----AMPDTSMSPVIEKGDLLVVEPRMRPADEDIVLIELSDKRLVVAHLVIDIAGRMLIY 195
Query: 197 SLNCCYPVDTVEMSDI 212
+ +
Sbjct: 196 QTGRPSEALDLPEGSV 211
>gi|183600458|ref|ZP_02961951.1| hypothetical protein PROSTU_04034 [Providencia stuartii ATCC 25827]
gi|188019942|gb|EDU57982.1| hypothetical protein PROSTU_04034 [Providencia stuartii ATCC 25827]
Length = 207
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K + R
Sbjct: 112 PHADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIEDEVTVKRFKQQGNR- 169
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L++ N + V++
Sbjct: 170 VELIAENPEFAPIIVDLRQ 188
>gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15]
Length = 327
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
++ + SM P+ G + +N+ + G + K L R G
Sbjct: 229 VEENAACAFVRGNSMEPVMPDGTCVGVNTGDTTIRDGEIYAIDHDGMLRVKYLHRRPGGG 288
Query: 193 IDLMSLNC-CYPVDTVEMSD-----IEWIARILWAS 222
I ++S N + + D I I R+ W S
Sbjct: 289 IKIVSQNASEHATEEYSAQDVIDNNIRIIGRVFWWS 324
>gi|241765291|ref|ZP_04763270.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
gi|241365010|gb|EER59915.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
Length = 144
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SM GD+L+++ A++ G +++ G+ K L + GR
Sbjct: 51 PQATFLLRVAGDSMRDAGIDDGDLLVVDRALKPRHG-CVVVAVVDGEFTVKRLHQQFGR- 108
Query: 193 IDLMSLNCCYPV 204
I L + N +P
Sbjct: 109 IRLRAANPTFPD 120
>gi|213971544|ref|ZP_03399655.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1]
gi|301386149|ref|ZP_07234567.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato
Max13]
gi|302060711|ref|ZP_07252252.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato K40]
gi|213923736|gb|EEB57320.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1]
Length = 143
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + I A SM GD+ I++ +++
Sbjct: 24 SAGFPSPAA-DHIEKHISLDELFSIRA--PHVYLVTVLGESMQGAGIHSGDLAIVDRSLE 80
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD +++ + V K L R + L S N + + D
Sbjct: 81 AEHGD-IVVAALNAEAVCKRLHMRN-EVLILQSENPHFAPRHIMEGD 125
>gi|329847829|ref|ZP_08262857.1| HTH-type transcriptional regulator prtR [Asticcacaulis biprosthecum
C19]
gi|328842892|gb|EGF92461.1| HTH-type transcriptional regulator prtR [Asticcacaulis biprosthecum
C19]
Length = 197
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 27/159 (16%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIY 131
L DG + + +IPL F G+ W + I + +
Sbjct: 50 LGRGDGPRSLSRMNDIPLSELR------------FSAGHGWVDVGEIEGRVIGFSDDELR 97
Query: 132 AIQTQDTR----HKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGD-IVAKVL 185
A+ + + SM P G +L+ Q+N G + R G+ + K L
Sbjct: 98 ALGRTSIHGLKAFRAKGDSMTPTIPDGAPVLVDELDTQLNEG---IYAFRVGEHLRIKRL 154
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEW---IARILWA 221
I+ S N YP + + +D+E + R++WA
Sbjct: 155 RPVGVGGIEARSDNDHYPPEVFQGADLEHFKILGRVIWA 193
>gi|323441550|gb|EGA99200.1| hypothetical protein SAO46_2483 [Staphylococcus aureus O46]
Length = 237
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM P+++ G+I+ + + G + V KV +
Sbjct: 151 VPPHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVED--DR 208
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y ++
Sbjct: 209 LTLVSLNKEYRDLHFYRNE 227
>gi|16765334|ref|NP_460949.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167993577|ref|ZP_02574671.1| protein UmuD [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|238912429|ref|ZP_04656266.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|137028|sp|P22493|UMUD_SALTY RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
gi|154413|gb|AAA27247.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16420532|gb|AAL20908.1| error-prone repair: SOS-response transcriptional repressor
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|205328407|gb|EDZ15171.1| protein UmuD [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261247164|emb|CBG24987.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267993990|gb|ACY88875.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158511|emb|CBW18021.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312912988|dbj|BAJ36962.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|323130277|gb|ADX17707.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332988886|gb|AEF07869.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 139
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-L 148
IPL +F + FP+ + + + + + + + K SM
Sbjct: 13 IPLPFFS------YLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKASGDSMIE 63
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD+L+++S+ + GD ++I G+ K L R ++ L+ +N Y V
Sbjct: 64 AGISDGDLLVVDSSRNADHGD-IVIAAIEGEFTVKRLQLRP--TVQLIPMNGAYRPIPVG 120
Query: 209 MSD 211
D
Sbjct: 121 SED 123
>gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68]
Length = 240
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-----SKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ LT LA+KAG+ + +K +K F + ++FK+ AA + Q
Sbjct: 35 QKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGD---------TLFKVAAALQCS-PQW 84
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L G+ E K P S + + + H+ YA
Sbjct: 85 LQNGDEKGKYWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWRHSVKYA 144
Query: 133 IQTQDTRHKTQDTSML-PL---YRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLIS 187
+ + SM P+ + +G +++N +V G ++ + ++ + K IS
Sbjct: 145 GER-GFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEATFKKYIS 203
Query: 188 RRGRSIDLMSLNCCYP 203
G++ L LN YP
Sbjct: 204 EMGKAF-LKPLNPQYP 218
>gi|300919981|ref|ZP_07136440.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
gi|300412928|gb|EFJ96238.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
Length = 235
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM P GD++ +N+ + G I + K LI S
Sbjct: 140 ERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSD-LLRVKTLI-ATPTS 197
Query: 193 IDLMSLNC-CYPVDTVEMSD----IEWIARILWAS 222
+ + S+N YP + ++ + + I R+ W+S
Sbjct: 198 VIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 232
>gi|289423803|ref|ZP_06425598.1| repressor LexA [Peptostreptococcus anaerobius 653-L]
gi|289155842|gb|EFD04512.1| repressor LexA [Peptostreptococcus anaerobius 653-L]
Length = 211
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 14/125 (11%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
+PL+ +GS + N + +P Y K + SML
Sbjct: 87 RLPLVGQIAAGS------PILAEENIEEYIALPS-------SYVKNGSSFMLKVKGDSML 133
Query: 149 PL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
GD +I++ + + +++ GD + R I L N Y
Sbjct: 134 NAGILDGDYIIIDPSNKNPSNGKMVAALIDGDTSTVKTLERIDNKIVLKPENPDYQPMIF 193
Query: 208 EMSDI 212
+ S +
Sbjct: 194 DTSQV 198
>gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638]
gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012]
gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638]
gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012]
gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74]
Length = 218
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-----SKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ LT LA+KAG+ + +K +K F + ++FK+ AA + Q
Sbjct: 13 QKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGD---------TLFKVAAALQCS-PQW 62
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L G+ E K P S + + + H+ YA
Sbjct: 63 LQNGDEKGKYWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWRHSVKYA 122
Query: 133 IQTQDTRHKTQDTSML-PL---YRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLIS 187
+ + SM P+ + +G +++N +V G ++ + ++ + K IS
Sbjct: 123 GER-GFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEATFKKYIS 181
Query: 188 RRGRSIDLMSLNCCYP 203
G++ L LN YP
Sbjct: 182 EMGKAF-LKPLNPQYP 196
>gi|168821320|ref|ZP_02833320.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205342098|gb|EDZ28862.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320088645|emb|CBY98403.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 202
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFTPIVVDLRE 183
>gi|78045221|ref|YP_360210.1| LexA repressor [Carboxydothermus hydrogenoformans Z-2901]
gi|123743176|sp|Q3ACC4|LEXA_CARHZ RecName: Full=LexA repressor
gi|77997336|gb|ABB16235.1| LexA repressor [Carboxydothermus hydrogenoformans Z-2901]
Length = 204
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 30/140 (21%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---GNKWNTVGVPEIRSPHNGIYAIQTQ 136
++ IPLL + +PT N + +P+ P ++A+
Sbjct: 72 AEKAPEELLSIPLLGNVAA---------GYPTLAIENAEEEMQIPKSLFPEKELFAL--- 119
Query: 137 DTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG- 190
+ + SM LP GD++I+ GD +++ G++ K
Sbjct: 120 ----RIKGDSMIEEGILP----GDVIIVKKQEVAENGD-IVVAYLEGEVTVKKFWKDSVN 170
Query: 191 RSIDLMSLNCCYPVDTVEMS 210
I L+ N Y +
Sbjct: 171 GVIKLIPANSKYEPIIINRE 190
>gi|89091943|ref|ZP_01164898.1| UmuD [Oceanospirillum sp. MED92]
gi|89083678|gb|EAR62895.1| UmuD [Oceanospirillum sp. MED92]
Length = 141
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + V + + + + + SM+ GDILI++ ++
Sbjct: 25 SAGFPS-PAQDYVE--KTLDLNELLIQRPAATYFVRAEGDSMIGAGIHSGDILIVDRSLT 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD ++I G++ K L + L+ N Y T+
Sbjct: 82 AKEGD-IVIAAVEGELTVKQLQLKPVCR--LLPRNNAYRPITIA 122
>gi|325918520|ref|ZP_08180636.1| SOS-response transcriptional repressor, LexA [Xanthomonas
vesicatoria ATCC 35937]
gi|325535255|gb|EGD07135.1| SOS-response transcriptional repressor, LexA [Xanthomonas
vesicatoria ATCC 35937]
Length = 201
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G +P+L + P G +G+ ++++ D
Sbjct: 68 PGGAGRDALLALPVLGRVAA---------GVPIGA---DIGLERQLWLDRTLFSL-RPDY 114
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
K Q SM GD++ ++ + + G ++++ G+I K L R I L+
Sbjct: 115 LLKVQGDSMIDDGILDGDLVGVHRSNEARDG-QIVVARVDGEITIKRL-ERGPERIRLLP 172
Query: 198 LNCCYPVDTVEMSD 211
N + V
Sbjct: 173 RNRAHAPIVVAADA 186
>gi|254172822|ref|ZP_04879496.1| signal peptidase I [Thermococcus sp. AM4]
gi|214032978|gb|EEB73806.1| signal peptidase I [Thermococcus sp. AM4]
Length = 191
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SM P GD++++ + V GD +L + G +++ D
Sbjct: 32 QYVVVLTDSMEPKIHPGDLVVVYPSKDVQPGDVILYRIEIGGTEYRIIHRVVAIRTD 88
>gi|241204519|ref|YP_002975615.1| LexA repressor [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240858409|gb|ACS56076.1| SOS-response transcriptional repressor, LexA [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 239
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 137 DIAVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 225
>gi|71280789|ref|YP_267128.1| putative transcriptional regulator [Colwellia psychrerythraea 34H]
gi|71146529|gb|AAZ27002.1| putative transcriptional regulator [Colwellia psychrerythraea 34H]
Length = 210
Score = 41.1 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCG--DRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
SM P + G ++++N G D + + +++ K L I + S
Sbjct: 121 MLVDGDSMYPTLKNGAMIMVNKHF---NGLSDGIYVMRHEQNLLVKRLQMLPNGIIKVKS 177
Query: 198 LNCCYPV-----DTVEMSDIEWIARILWASQ 223
N Y + ++ +DIE I R++W+ Q
Sbjct: 178 DNNLYEPWEINKENLDGTDIEIIGRVVWSGQ 208
>gi|322835568|ref|YP_004215594.1| peptidase S24/S26A/S26B [Rahnella sp. Y9602]
gi|321170769|gb|ADW76467.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602]
Length = 139
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + + + K SM GD+L+++ ++
Sbjct: 23 PCGFPS-PAQDYVE--DRLDLNKLLIRHPSATYFIKVSGESMHGAGISDGDLLVVDRSLS 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I +G+ K L R + L+ N Y + + ++
Sbjct: 80 AVHGD-IVIAAVSGEFTVKEL--RTHPYLQLVPHNDDYSSISFQNAE 123
>gi|296444565|ref|ZP_06886529.1| transcriptional repressor, LexA family [Methylosinus trichosporium
OB3b]
gi|296257833|gb|EFH04896.1| transcriptional repressor, LexA family [Methylosinus trichosporium
OB3b]
Length = 235
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
T+ +P +A++ + GDI+++ + GD ++
Sbjct: 134 TISLPPDLLGGGEHFALEVRGDSMIDAG------ILDGDIVVVKKQDSADTGDIVVALID 187
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K L R SI L + N Y + R++
Sbjct: 188 DEEATLKRLRKRGA-SIALEAANPAYETRIFGPDRVRIQGRLV 229
>gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii
DSM 4541]
gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
DSM 4541]
Length = 233
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIK 174
P R + K S+ P+ GD++ ++ S + GD L
Sbjct: 119 EEYTYPFRRDELRKYGVSASNARIVKIIGNSLYPVLNSGDLVAVDVSKRDIKDGD--LYA 176
Query: 175 PRTGDIV-AKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEW----IARILWAS 222
R G ++ K+L+ R I + S N YP + + ++ I R+ W+S
Sbjct: 177 IRDGVLLRVKILVYRPDGGIIIRSFNKDEYPDEQLPRNEAAARVHVIGRVFWSS 230
>gi|330900329|gb|EGH31748.1| LexA repressor [Pseudomonas syringae pv. japonica str. M301072PT]
gi|330981302|gb|EGH79405.1| LexA repressor [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 202
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 16/130 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ EIP+L + P G + + + D +
Sbjct: 73 PRPELLEIPVLGRVAA---------GVPIGPDLDIHTTLHLDRSTFT----RVPDYLLRV 119
Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
Q SM GD++ ++ Q + G ++ + G++ K L R I L+ N
Sbjct: 120 QGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQRR-ADQIRLLPRNPA 177
Query: 202 YPVDTVEMSD 211
Y V
Sbjct: 178 YEPIIVTPDQ 187
>gi|302187803|ref|ZP_07264476.1| LexA repressor [Pseudomonas syringae pv. syringae 642]
Length = 205
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 16/133 (12%)
Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
+ EIP+L +G+ P G + + + D
Sbjct: 73 SSEPRPELLEIPVLGRVAAGA---------PIGPDLDIHTTLHLDRSTFT----RVPDYL 119
Query: 140 HKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ Q SM GD++ ++ Q + G ++ + G++ K L R + L+
Sbjct: 120 LRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQRR-ADQVRLLPR 177
Query: 199 NCCYPVDTVEMSD 211
N Y V
Sbjct: 178 NPAYEPIIVTPDQ 190
>gi|192361112|ref|YP_001982175.1| LexA repressor [Cellvibrio japonicus Ueda107]
gi|229621197|sp|B3PEX1|LEXA_CELJU RecName: Full=LexA repressor
gi|190687277|gb|ACE84955.1| LexA repressor [Cellvibrio japonicus Ueda107]
Length = 200
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM GD+L ++ QV G ++ + ++ K + ++
Sbjct: 106 PSADYFLRVHGMSMKDAGILDGDLLAVHRTDQVRNGQIVVARIGE-EVTVKRFKRQGNQA 164
Query: 193 -IDLMSLNCCYPVDTVEMSDIE 213
++L N + V V+M D E
Sbjct: 165 QVELWPENPDFKVIHVDMRDQE 186
>gi|78485203|ref|YP_391128.1| putative prophage repressor [Thiomicrospira crunogena XCL-2]
gi|78363489|gb|ABB41454.1| UmuD protein. Serine peptidase. MEROPS family S24 [Thiomicrospira
crunogena XCL-2]
Length = 206
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + V ++ + + Q SM + GDIL+++ ++
Sbjct: 91 AGFPSPAD-DYVE--TRLDLNDKLIQNKQATFLLTVQGDSMKKAGIQDGDILVVDRSLTP 147
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV-DTVEMSDIEWIARILW 220
G +++I G++ K L + + L+ N YP E SDI ++W
Sbjct: 148 QDG-KIVIAALDGELTVKTLSIKSTGTW-LVPENDNYPPIPVREESDI-----VIW 196
>gi|330971222|gb|EGH71288.1| LexA repressor [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 202
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 16/130 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ EIP+L + P G + + + D +
Sbjct: 73 PRPELLEIPVLGRVAA---------GVPIGPDLDIHTTLHLDRSTFT----RVPDYLLRV 119
Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
Q SM GD++ ++ Q + G ++ + G++ K L R + L+ N
Sbjct: 120 QGDSMIEDGILDGDLVGVHRNSQASDGQIVVARL-DGEVTIKRLQRR-ADQVRLLPRNPA 177
Query: 202 YPVDTVEMSD 211
Y V
Sbjct: 178 YEPIIVTPDK 187
>gi|16762918|ref|NP_458535.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16767487|ref|NP_463102.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29144405|ref|NP_807747.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56416037|ref|YP_153112.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62182686|ref|YP_219103.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161505300|ref|YP_001572412.1| LexA repressor [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|161617365|ref|YP_001591330.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167552539|ref|ZP_02346292.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167991426|ref|ZP_02572525.1| LexA repressor [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168231233|ref|ZP_02656291.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168239348|ref|ZP_02664406.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168243634|ref|ZP_02668566.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168263442|ref|ZP_02685415.1| LexA repressor [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|168466919|ref|ZP_02700767.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|194446691|ref|YP_002043488.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194449839|ref|YP_002048228.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194472176|ref|ZP_03078160.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194738283|ref|YP_002117116.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197247736|ref|YP_002149151.1| LexA repressor [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197263236|ref|ZP_03163310.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197364964|ref|YP_002144601.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198244996|ref|YP_002218132.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|200388085|ref|ZP_03214697.1| LexA repressor [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204927146|ref|ZP_03218348.1| LexA repressor [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205355009|ref|YP_002228810.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859391|ref|YP_002246042.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213052230|ref|ZP_03345108.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213423564|ref|ZP_03356544.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
gi|213424504|ref|ZP_03357301.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213619392|ref|ZP_03373218.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213647510|ref|ZP_03377563.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213859894|ref|ZP_03385598.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
gi|224586003|ref|YP_002639802.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238913014|ref|ZP_04656851.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|289824645|ref|ZP_06544172.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|61227645|sp|P0A273|LEXA_SALTY RecName: Full=LexA repressor
gi|61227646|sp|P0A274|LEXA_SALTI RecName: Full=LexA repressor
gi|71648702|sp|Q57GZ0|LEXA_SALCH RecName: Full=LexA repressor
gi|71648703|sp|Q5PL14|LEXA_SALPA RecName: Full=LexA repressor
gi|189046544|sp|A9MGP6|LEXA_SALAR RecName: Full=LexA repressor
gi|189046545|sp|A9N1L6|LEXA_SALPB RecName: Full=LexA repressor
gi|226694239|sp|B5F1Q6|LEXA_SALA4 RecName: Full=LexA repressor
gi|226694240|sp|B5FQR1|LEXA_SALDC RecName: Full=LexA repressor
gi|226694241|sp|B5QZ62|LEXA_SALEP RecName: Full=LexA repressor
gi|226694242|sp|B5R7T6|LEXA_SALG2 RecName: Full=LexA repressor
gi|229621745|sp|B4TDM0|LEXA_SALHS RecName: Full=LexA repressor
gi|229621746|sp|B4T1T2|LEXA_SALNS RecName: Full=LexA repressor
gi|229621747|sp|B5BJW0|LEXA_SALPK RecName: Full=LexA repressor
gi|229621748|sp|B4TQQ5|LEXA_SALSV RecName: Full=LexA repressor
gi|254809105|sp|C0Q514|LEXA_SALPC RecName: Full=LexA repressor
gi|25300634|pir||AD1015 repressor LexA (EC 3.4.21.88) [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|47766|emb|CAA44731.1| lexA [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16422795|gb|AAL23061.1| SOS response regulator [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16505225|emb|CAD09221.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi]
gi|29140043|gb|AAO71607.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56130294|gb|AAV79800.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62130319|gb|AAX68022.1| SOS response regulator, transcriptional repressor (LexA family)
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|160866647|gb|ABX23270.1| hypothetical protein SARI_03441 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161366729|gb|ABX70497.1| hypothetical protein SPAB_05220 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405354|gb|ACF65576.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194408143|gb|ACF68362.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194458540|gb|EDX47379.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194713785|gb|ACF93006.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195630596|gb|EDX49208.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197096441|emb|CAR62047.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197211439|gb|ACH48836.1| LexA repressor [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197241491|gb|EDY24111.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197287939|gb|EDY27327.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197939512|gb|ACH76845.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|199605183|gb|EDZ03728.1| LexA repressor [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204323811|gb|EDZ09006.1| LexA repressor [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205274790|emb|CAR39849.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205322831|gb|EDZ10670.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205330205|gb|EDZ16969.1| LexA repressor [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205334379|gb|EDZ21143.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205337302|gb|EDZ24066.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205347902|gb|EDZ34533.1| LexA repressor [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|206711194|emb|CAR35570.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224470531|gb|ACN48361.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261249335|emb|CBG27198.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267996548|gb|ACY91433.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160730|emb|CBW20261.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312915342|dbj|BAJ39316.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321223105|gb|EFX48175.1| SOS-response repressor and protease LexA [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322615393|gb|EFY12313.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618454|gb|EFY15343.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322622135|gb|EFY18985.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627205|gb|EFY23997.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322631166|gb|EFY27930.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637616|gb|EFY34317.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642582|gb|EFY39179.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322643598|gb|EFY40153.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648334|gb|EFY44793.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322654643|gb|EFY50963.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322659603|gb|EFY55846.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322662189|gb|EFY58405.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666066|gb|EFY62244.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672486|gb|EFY68597.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322675915|gb|EFY71986.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322680399|gb|EFY76437.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322684706|gb|EFY80710.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322717185|gb|EFZ08756.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323132576|gb|ADX20006.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323195970|gb|EFZ81136.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197100|gb|EFZ82241.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201782|gb|EFZ86846.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206296|gb|EFZ91258.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213308|gb|EFZ98110.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323215677|gb|EGA00421.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323222100|gb|EGA06486.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323226512|gb|EGA10718.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229137|gb|EGA13266.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236254|gb|EGA20330.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323237627|gb|EGA21688.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241708|gb|EGA25737.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323248145|gb|EGA32082.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323254524|gb|EGA38335.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323258416|gb|EGA42093.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259695|gb|EGA43329.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265968|gb|EGA49464.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323270410|gb|EGA53858.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326625929|gb|EGE32274.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
gi|326630161|gb|EGE36504.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
gi|332991053|gb|AEF10036.1| LexA repressor [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 202
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFTPIVVDLRE 183
>gi|330721314|gb|EGG99396.1| Error-prone repair protein UmuD [gamma proteobacterium IMCC2047]
Length = 144
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + + + + + +SM + D+LI++ A++
Sbjct: 25 PAGFPSPAD-DYMD--KKLDLNEHLIQHPSATFYCRVSGSSMTAVGIFDDDLLIVDRALK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
GD +++ G + K+L R L+ N YP
Sbjct: 82 PRQGD-VVLAFVNGGLACKILD---IRGKQLLPANDQYPP 117
>gi|282850930|ref|ZP_06260304.1| peptidase S24-like protein [Lactobacillus gasseri 224-1]
gi|282557882|gb|EFB63470.1| peptidase S24-like protein [Lactobacillus gasseri 224-1]
Length = 226
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 59/219 (26%), Gaps = 59/219 (26%)
Query: 20 HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFKILAATNETICQLL 73
H +T S LARKAG+ T+ G R ST E + L I
Sbjct: 26 HGMTQSELARKAGIPLTTL--------SGYLREKSTPNAGNLEKLALALNVKKSDIDPRY 77
Query: 74 DLPFSDGRTTEK-------KEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKWNTV 118
T +P++ G+ T
Sbjct: 78 SFELDSEPTPSNSIDTSGMHYVRVPIIGTIACGEPILAEQNIEGY-------------TH 124
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSA------IQVNCGDR 170
+ E + ++A+ + Q SM PL G ++++ V D
Sbjct: 125 ELFEEEPKKDELFAL-------RCQGDSMEPLIPDGALVLIHKQPTVEDDEIAAVQVDDD 177
Query: 171 LLIKPRTGDIVAKV--LISRRGRSIDLMSLNCCYPVDTV 207
+ V K L D + LN P +
Sbjct: 178 TRATLKKVKHVGKDVFLYPINTTKYDPIILNEDNPGRIL 216
>gi|47605793|sp|P61605|LEXA_AGRTU RecName: Full=LexA repressor
gi|33339178|gb|AAQ14270.1|AF251129_1 LexA [Agrobacterium tumefaciens]
Length = 239
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM GD +I+ + + GD ++
Sbjct: 137 DISVPVEMIGSGEHYALE-------IKGDSMIEAGILDGDTVIIRNGSTASPGDIVVALI 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + SI L + N Y ++ R++
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGRLV 232
>gi|170719058|ref|YP_001784213.1| prophage repressor [Haemophilus somnus 2336]
gi|168827187|gb|ACA32558.1| putative prophage repressor [Haemophilus somnus 2336]
Length = 228
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK------VLISRR 189
K SM P +++GD+++++ I GD ++ + K +
Sbjct: 133 NAFYLKIVGNSMSPRFQEGDMVLIDPEIYPVPGDFVVAINEDNEATFKQYKETGEVDEHG 192
Query: 190 GRSIDLMSLNCCYPVDTVEMSDI 212
+ L+ LN + + + I
Sbjct: 193 RKHFKLVPLNDNFGTLSSKHHKI 215
>gi|260856429|ref|YP_003230320.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
11368]
gi|257755078|dbj|BAI26580.1| predicted phage repressor protein CI [Escherichia coli O26:H11 str.
11368]
Length = 235
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM P GD++ +N+ + G I + K LI S
Sbjct: 140 ERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSD-LLRVKTLI-ATPTS 197
Query: 193 IDLMSLNC-CYPVDTVEMSD----IEWIARILWAS 222
+ + S+N YP + ++ + + I R+ W+S
Sbjct: 198 VIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 232
>gi|206579793|ref|YP_002239124.1| protein UmuD homolog [Klebsiella pneumoniae 342]
gi|288936023|ref|YP_003440082.1| peptidase S24/S26A/S26B, conserved region [Klebsiella variicola
At-22]
gi|290512829|ref|ZP_06552194.1| DNA polymerase V [Klebsiella sp. 1_1_55]
gi|206568851|gb|ACI10627.1| protein UmuD homolog [Klebsiella pneumoniae 342]
gi|288890732|gb|ADC59050.1| Peptidase S24/S26A/S26B, conserved region [Klebsiella variicola
At-22]
gi|289774712|gb|EFD82715.1| DNA polymerase V [Klebsiella sp. 1_1_55]
Length = 139
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + + + K SM GD+L+++ ++
Sbjct: 23 PCGFPS-PAQDYVE--DRLDLNKLLIKHPSATYFIKVSGESMRDAGISDGDLLVVDRSLS 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R + L+ N Y + ++
Sbjct: 80 AVHGD-IVIAAIAGEFTVKEL--RTHPFLQLVPHNRDYASISFHNAE 123
>gi|291617316|ref|YP_003520058.1| UmuD [Pantoea ananatis LMG 20103]
gi|291152346|gb|ADD76930.1| UmuD [Pantoea ananatis LMG 20103]
gi|327393763|dbj|BAK11185.1| SOS-response transcriptional repressor UmuD [Pantoea ananatis
AJ13355]
Length = 145
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + I + + SM GD+L+++SA++
Sbjct: 29 PCGFPS-PAQDYVE--QRIDLNKLIVQHPSSTYFVRVSGESMTGAGINDGDMLVVDSALR 85
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ GD +++ G+ K L + + LM +N + + D
Sbjct: 86 ASHGD-IVVASVEGEFTVKRLQLQPC--LQLMPMNRQFKPIAISTED 129
>gi|332703676|ref|ZP_08423764.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus
str. Walvis Bay]
gi|332553825|gb|EGJ50869.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus
str. Walvis Bay]
Length = 151
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + V + + + + SM + R GD+L+++ +I
Sbjct: 24 AGFPSPAD-DYVE--QSLDLNEHLVRNPPATYFVRASGDSMEGVGIRPGDLLVVDRSIDP 80
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
G ++I G+ K L R + L N Y
Sbjct: 81 RPG-LIVIASVQGEYTVKTLERR-ADRLWLAPANPRY 115
>gi|15888721|ref|NP_354402.1| LexA repressor [Agrobacterium tumefaciens str. C58]
gi|25453092|sp|Q8UFK2|LEXA_AGRT5 RecName: Full=LexA repressor
gi|15156463|gb|AAK87187.1| LexA repressor [Agrobacterium tumefaciens str. C58]
Length = 240
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 14/140 (10%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWN---TVGVPEIRSPHNGIYAI 133
+ P F + + + P N + VP YA+
Sbjct: 95 PKEPEPAPAVKAPANDFAGAATIPVMGRIAAGVPISAIQNNTHDLAVPVDMLGSGEHYAL 154
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM GD +I+ + N GD ++ + K + S
Sbjct: 155 E-------VKGDSMIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGA-S 206
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I L + N Y +
Sbjct: 207 IALEAANPAYETRIFGPDRV 226
>gi|325290126|ref|YP_004266307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
8271]
gi|324965527|gb|ADY56306.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
8271]
Length = 101
Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
++ + LA+ LDPT+ K + + PS S+ +I A ++
Sbjct: 15 GISANALAKNVCLDPTTI--YKIEANDAK---PSLGSLERICEALGISLADFFS 63
>gi|189464654|ref|ZP_03013439.1| hypothetical protein BACINT_00997 [Bacteroides intestinalis DSM
17393]
gi|189436928|gb|EDV05913.1| hypothetical protein BACINT_00997 [Bacteroides intestinalis DSM
17393]
Length = 240
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRLLIKPR-TGD--IVAKVLI 186
I D SM P+ + GD++ +NS V G+ L+ GD + K +
Sbjct: 138 IPACDGALYISGDSMYPILKSGDVVGFKEVNSFSSVIYGEMYLVSFCIDGDEYLSVKYVN 197
Query: 187 SRRGRS-IDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
I L+S N + + ++ I+ +A I+ S
Sbjct: 198 RSDVEGCIKLVSYNPHHEPMDIPLASIQAMA-IVKFS 233
>gi|66045998|ref|YP_235839.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
B728a]
gi|63256705|gb|AAY37801.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
B728a]
Length = 143
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + I A SM GD+ I++ +++
Sbjct: 24 SAGFPSPAA-DHIEKHISLDELFSIRA--PHVYLVTVLGESMQGAGIHSGDLAIVDRSLE 80
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD +++ + V K L R I L S N + + D
Sbjct: 81 AEHGD-IVVAALNAEAVCKRLHMRNDVVI-LQSENPHFAPRHIMEGD 125
>gi|300781920|ref|YP_003739155.1| SamA [Erwinia billingiae Eb661]
gi|299060186|emb|CAX53376.1| Protein SamA [Erwinia billingiae Eb661]
Length = 148
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
+ +PL P + FP+ + V + +
Sbjct: 14 PPESCPQLRVPLFADPCA--------AGFPS-PAQDYVE--SELDLNELCIRRRASTFFV 62
Query: 141 KTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ +SM L GD+++++ A + + GD ++I G+ K L + + L+ +N
Sbjct: 63 RASGSSMQELGLFDGDVMVVDRAEEASQGD-IVIAEVNGEFTVKRLQLQPC--LALLPMN 119
Query: 200 CCYPVDTVEMSDIEWIARILW 220
YPV + D++ + + W
Sbjct: 120 PAYPV--IYPEDLQLLGVVTW 138
>gi|299537453|ref|ZP_07050747.1| Signal peptidase I T [Lysinibacillus fusiformis ZC1]
gi|298727014|gb|EFI67595.1| Signal peptidase I T [Lysinibacillus fusiformis ZC1]
Length = 186
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRS 192
Q K Q SM P Y DI+I++ ++ D+++ + P ++ K +I G
Sbjct: 32 QFLFAPIKVQGASMYPTYHDKDIIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGLPGDK 91
Query: 193 IDL 195
+++
Sbjct: 92 VEM 94
>gi|169828759|ref|YP_001698917.1| Signal peptidase I T [Lysinibacillus sphaericus C3-41]
gi|168993247|gb|ACA40787.1| Signal peptidase I T [Lysinibacillus sphaericus C3-41]
Length = 188
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRS 192
Q K Q SM P Y DI+I++ ++ D+++ + P ++ K +I G
Sbjct: 34 QFLFAPIKVQGASMYPTYHDKDIIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGLPGDK 93
Query: 193 IDL 195
+++
Sbjct: 94 VEM 96
>gi|58040701|ref|YP_192665.1| LexA repressor [Gluconobacter oxydans 621H]
gi|58003115|gb|AAW62009.1| LexA repressor [Gluconobacter oxydans 621H]
Length = 259
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 19/146 (13%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+++ IPL +G D + + VP YA+
Sbjct: 124 SEASVANDRQTVSIPLYGRIAAGLPIEAMQDDS--------DRIDVPVSLLGTGEHYAL- 174
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM GDI I+ G ++ ++ K L R G I
Sbjct: 175 ------TVAGDSMIEAGILDGDIAIIRRRETAENGQIIVALIDEQEVTLKKLRRR-GSMI 227
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + R++
Sbjct: 228 ALEAANRDYETRIFPAERVHIQGRLV 253
>gi|313668958|ref|YP_004049242.1| transcriptional regulator [Neisseria lactamica ST-640]
gi|313006420|emb|CBN87883.1| putative transcriptional regulator [Neisseria lactamica 020-06]
Length = 228
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N + D L + +++ K L G I+++S N
Sbjct: 140 ISVKGDSMEGVLNDGDSILVNHSENTPK-DGLYVLRINENLLVKRLQIVPGGIINVISAN 198
Query: 200 CCYP----VDTVEMSDIEWIARILW 220
YP D+E I R+ W
Sbjct: 199 EAYPAFEINLNHPADDVEIIGRVEW 223
>gi|270262434|ref|ZP_06190705.1| protein UmuD [Serratia odorifera 4Rx13]
gi|270043118|gb|EFA16211.1| protein UmuD [Serratia odorifera 4Rx13]
Length = 140
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SM + GD+LI++S+++ G+ ++I G+ K L
Sbjct: 49 PNATYFVRASGDSMVEGNIKDGDLLIVDSSLRAEHGN-IVIAAIDGEFTVKKLQRHP--D 105
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ +N Y D
Sbjct: 106 LRLLPMNPAYAPIVFGDED 124
>gi|320159692|ref|YP_004172916.1| hypothetical protein ANT_02820 [Anaerolinea thermophila UNI-1]
gi|319993545|dbj|BAJ62316.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
Length = 798
Score = 41.1 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSI 193
SM PL+ KGD+++L A GD ++ + G ++ +++ R R +
Sbjct: 38 EYVIVSGDSMEPLFHKGDLVLLRRAPFYEVGDIVVYRYPGIGAVIHRIVDRRLDRFV 94
>gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905]
Length = 218
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 22/196 (11%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-----SKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ LT LA+KAG+ + +K +K F + ++FK+ AA + Q
Sbjct: 13 QKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGD---------TLFKVAAALQCS-PQW 62
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
L G+ E K P S + T + + H+ YA
Sbjct: 63 LQNGDEKGKHWENNVKSCPQRDTAHSYPVINWVQAGLFTTAGDDYNMYDQDNWRHSVKYA 122
Query: 133 IQTQDTRHKTQDTSML-PL---YRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLIS 187
+ + SM P+ + +G +++N +V G ++ + ++ + K IS
Sbjct: 123 GER-GFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEATFKKYIS 181
Query: 188 RRGRSIDLMSLNCCYP 203
G++ L LN YP
Sbjct: 182 EMGKAF-LKPLNPQYP 196
>gi|298370234|ref|ZP_06981550.1| repressor protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298281694|gb|EFI23183.1| repressor protein [Neisseria sp. oral taxon 014 str. F0314]
Length = 231
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 40/191 (20%)
Query: 44 FGIEGRNRWP----STESIFKILAATN--ETICQLLDLPFSDGRTTEKKEKEI----PLL 93
EG +P +TES I I + + +P D + + P+
Sbjct: 62 LTGEGEP-FPHSHLATESSATISDTLGNPVDIDEFVFIPRYDIQAAAGHGRLAGNEKPMF 120
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
F W N + + + SM +
Sbjct: 121 AMA------FRRD--------WIE----------NYVTRSTKNLSVISVKGDSMEGVLND 156
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----M 209
GD +++N D L + +++ K L G I+++S N YP ++
Sbjct: 157 GDSILINHGETTPR-DGLYVLRINENLLVKRLQVMPGGIINVISANDAYPTFEIDLNHLT 215
Query: 210 SDIEWIARILW 220
D+ I R+ W
Sbjct: 216 DDVAIIGRVEW 226
>gi|289673956|ref|ZP_06494846.1| LexA repressor [Pseudomonas syringae pv. syringae FF5]
Length = 99
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D + Q SM GD++ ++ Q + G ++ + G++ K L R I
Sbjct: 9 VPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQRR-ADQI 66
Query: 194 DLMSLNCCYPVDTVEMSD 211
L+ N Y V
Sbjct: 67 RLLPRNPAYEPIIVTPDQ 84
>gi|90416646|ref|ZP_01224576.1| LexA repressor [marine gamma proteobacterium HTCC2207]
gi|90331399|gb|EAS46635.1| LexA repressor [marine gamma proteobacterium HTCC2207]
Length = 201
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 20/128 (15%)
Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
IP++ +G + N + VP + Y + + Q SM
Sbjct: 73 SGIPIIGRVAAG------DPILAEQNIEDYQEVPSSTFHPHADYFL-------RVQGQSM 119
Query: 148 LPL-YRKGDILIL--NSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYP 203
+ + GD+L + + ++++ G++ K L R I L+ N Y
Sbjct: 120 INVGIMDGDLLAVHQQPTAE---NSQIVVARVDGEVTVKRLKRTRSKHEIHLLPENHDYS 176
Query: 204 VDTVEMSD 211
V++
Sbjct: 177 PILVDLRA 184
>gi|58583065|ref|YP_202081.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188577892|ref|YP_001914821.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A]
gi|71648695|sp|Q5GX75|LEXA1_XANOR RecName: Full=LexA repressor 1
gi|58427659|gb|AAW76696.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188522344|gb|ACD60289.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 201
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G +P+L + P G +G+ ++++ D
Sbjct: 68 PGGAGRDALLNLPVLGRVAA---------GVPIGA---DIGLERQLWLDRALFSL-RPDY 114
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ Q SM GD++ ++ + + G ++++ G+I K L R I L+
Sbjct: 115 LLQVQGDSMIDDGILDGDLVGVHRSKEARDG-QIVVARVDGEITIKRLERGTER-IRLLP 172
Query: 198 LNCCYPVDTVEMSD 211
N + V
Sbjct: 173 RNRAHAPIVVAADA 186
>gi|325134356|gb|EGC57001.1| Peptidase S24-like family protein [Neisseria meningitidis M13399]
Length = 206
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 57 ADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV---- 106
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
DTSM P+ KGD+L++ ++ D +LI+ +V L
Sbjct: 107 ---AMPDTSMSPVIEKGDLLVVEPRMRPADEDIVLIELSDKRLVVAHL 151
>gi|329897460|ref|ZP_08272103.1| SOS-response repressor and protease LexA [gamma proteobacterium
IMCC3088]
gi|328921157|gb|EGG28560.1| SOS-response repressor and protease LexA [gamma proteobacterium
IMCC3088]
Length = 199
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGR 191
D K + SM+ + GD L + V G ++++ ++ K L G
Sbjct: 106 PPADYFLKVRGDSMINVGILDGDFLAVKRTSDVRNG-QIVVARIEDEVTVKRLDKPAGGH 164
Query: 192 SIDLMSLNCCYPVDTVEMSD 211
++ L++ N Y V++ D
Sbjct: 165 TVRLIAENPAYEPIVVDLRD 184
>gi|258404327|ref|YP_003197069.1| putative phage repressor [Desulfohalobium retbaense DSM 5692]
gi|257796554|gb|ACV67491.1| putative phage repressor [Desulfohalobium retbaense DSM 5692]
Length = 211
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM P ++GD ++++ Q + ++ K + + + L+S N
Sbjct: 123 MDIMGDSMEPELKEGDTVLVDQNQQEIYAGGMYAMGVEDTVMVKRVEKHPNKLV-LLSTN 181
Query: 200 CCYPVDTVEMSDIEW---IARILWA 221
Y ++ +IE I RILW
Sbjct: 182 QRYTPIVLQGDEIEAVTCIGRILWV 206
>gi|225076034|ref|ZP_03719233.1| hypothetical protein NEIFLAOT_01061 [Neisseria flavescens
NRL30031/H210]
gi|241760766|ref|ZP_04758857.1| transcriptional regulator [Neisseria flavescens SK114]
gi|319639088|ref|ZP_07993845.1| transcriptional regulator [Neisseria mucosa C102]
gi|224952749|gb|EEG33958.1| hypothetical protein NEIFLAOT_01061 [Neisseria flavescens
NRL30031/H210]
gi|241318663|gb|EER55215.1| transcriptional regulator [Neisseria flavescens SK114]
gi|317399666|gb|EFV80330.1| transcriptional regulator [Neisseria mucosa C102]
Length = 228
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N +++ +++ K L G ++++S N
Sbjct: 140 ISVKGDSMEGVLNDGDTILINHGQTTPRDGLYVLRLNE-NLLVKRLQLIPGGIVNVISAN 198
Query: 200 CCYPVDTV----EMSDIEWIARILW 220
YP + D+ I R+ W
Sbjct: 199 EAYPTFEIDLKNPTDDVAIIGRVEW 223
>gi|221641156|ref|YP_002527418.1| hypothetical protein RSKD131_3057 [Rhodobacter sphaeroides KD131]
gi|221161937|gb|ACM02917.1| Hypothetical Protein RSKD131_3057 [Rhodobacter sphaeroides KD131]
Length = 212
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 32/172 (18%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
KI AA +I F + + +G+ + G+ V
Sbjct: 52 KIAAAFGVSIEDFFAGVFDRQP-------SVAVAGRVGAGAHVDLVDA-YAKGDGMYHVA 103
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P PH G+ A++ + SMLPL+R G +L A + + ++
Sbjct: 104 CPPQLKPH-GVVAVE-------VEGDSMLPLHRPGSVLFYTRAAA----EGVPVEAINAP 151
Query: 180 IVAKVLISRR----------GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
V + + R + L+SLN + ++W A +L A
Sbjct: 152 CVCEDVDGRAWLKVVKIGSQEGTFSLLSLNPDSDN--MHGVRLKWAAPVLLA 201
>gi|254294062|ref|YP_003060085.1| LexA repressor [Hirschia baltica ATCC 49814]
gi|254042593|gb|ACT59388.1| SOS-response transcriptional repressor, LexA [Hirschia baltica ATCC
49814]
Length = 228
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
+ + P + + +A++ Q SM GDI+IL G+ ++
Sbjct: 125 DRITAPTLGMNSDQHFALE-------VQGDSMIEAGILDGDIVILKKGDTAISGEIVVAL 177
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + R G SI L + N Y +
Sbjct: 178 VNEEEATLKRIRKRNG-SIALEAANPAYETRIFGPDKV 214
>gi|261379287|ref|ZP_05983860.1| putative repressor protein [Neisseria subflava NJ9703]
gi|284797724|gb|EFC53071.1| putative repressor protein [Neisseria subflava NJ9703]
Length = 228
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N +++ +++ K L G ++++S N
Sbjct: 140 ISVKGDSMEGVLNDGDTILINHGQTTPRDGLYVLRLNE-NLLVKRLQLIPGGIVNVISAN 198
Query: 200 CCYPVDTV----EMSDIEWIARILW 220
YP + D+ I R+ W
Sbjct: 199 EAYPTFEIDLKNPTDDVAIIGRVEW 223
>gi|331646999|ref|ZP_08348098.1| protein SamB [Escherichia coli M605]
gi|331044316|gb|EGI16447.1| protein SamB [Escherichia coli M605]
Length = 297
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--DTSMLPL-YRKGDILILNSA 162
FP+ + + Y I+ + + SM + GD++I++ A
Sbjct: 24 PAGFPSPAA-DYME----EELDLNTYCIRHPASTFFVRAIGDSMKDMGLHSGDLMIVDKA 78
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
+ GD ++I G+ K L + + L+ +N P
Sbjct: 79 EKPQQGD-IVIAETDGEFTVKRLQLKP--RVALLPMNPVSPPKQ 119
>gi|166711026|ref|ZP_02242233.1| LexA repressor [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 201
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
G +P+L + P G +G+ ++++ D
Sbjct: 68 PGGAGRDALLNLPVLGRVAA---------GVPIGA---DIGLERQLWLDRALFSL-RPDY 114
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ Q SM GD++ ++ + + G ++++ G+I K L R I L+
Sbjct: 115 LLQVQGDSMIDDGILDGDLVGVHRSNEARDG-QIVVARVDGEITIKRLERGTER-IRLLP 172
Query: 198 LNCCYPVDTVEMSD 211
N + V
Sbjct: 173 RNRAHAPIVVAADA 186
>gi|94499501|ref|ZP_01306038.1| LexA repressor [Oceanobacter sp. RED65]
gi|94428255|gb|EAT13228.1| LexA repressor [Oceanobacter sp. RED65]
Length = 202
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 15/131 (11%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
R +++E +PL+ +G + + V +P + ++
Sbjct: 67 RLAQQEETGLPLIGRVAAG------EPILAQEHVERHVQLPRDFFHPTADFLLE------ 114
Query: 141 KTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM + GD++ ++ QV G ++ + + ++ K + + L+ N
Sbjct: 115 -VHGDSMKDIGIMNGDLIAVHKTQQVRNGQIVVARVNSEEVTVKRFQ-KDKNIVKLLPEN 172
Query: 200 CCYPVDTVEMS 210
Y V++
Sbjct: 173 SEYSPIVVDLE 183
>gi|269104777|ref|ZP_06157473.1| phage repressor [Photobacterium damselae subsp. damselae CIP
102761]
gi|268161417|gb|EEZ39914.1| phage repressor [Photobacterium damselae subsp. damselae CIP
102761]
Length = 238
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
PL+ + +G+ F + +P + P + + + + SM+
Sbjct: 112 PLISWVQAGA--FTEIREYPES---DYQYYPSPVKCGSRTFIL-------RVHGDSMMDR 159
Query: 151 YRKGDILILNSA-IQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVD 205
+ +GD++ ++ I+ G ++ + + K L G+ + L +LN YP D
Sbjct: 160 FHEGDLIYVDPDQIEPIHGKFVIAQLEDSAEATFKQLQIVDGQKL-LKALNPNYPAD 215
>gi|295397998|ref|ZP_06808054.1| repressor LexA [Aerococcus viridans ATCC 11563]
gi|294973756|gb|EFG49527.1| repressor LexA [Aerococcus viridans ATCC 11563]
Length = 203
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 24/139 (17%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIRSPHNGIYAIQTQDTRHK 141
+ IP++ +G P P +++ + ++ + K
Sbjct: 76 SSQGIPMIGTVTAGQ---------PITAVEEIEDYFPIPPTLKNQSDSLFML-------K 119
Query: 142 TQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM GD +I+ GD ++ G+ K G I L N
Sbjct: 120 IRGDSMIEAGILDGDFVIVRQESSAKNGDIVIAMTDEGEATCKRFFKEDG-YIRLQPENH 178
Query: 201 CYPVDTVEMSDIEWIARIL 219
+ D++ + R++
Sbjct: 179 SLEPIILP--DVQILGRVI 195
>gi|66045756|ref|YP_235597.1| LexA repressor [Pseudomonas syringae pv. syringae B728a]
gi|63256463|gb|AAY37559.1| Peptidase S24, LexA repressor [Pseudomonas syringae pv. syringae
B728a]
Length = 205
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 16/130 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ EIP+L + P G + + + D +
Sbjct: 76 PRPELLEIPVLGRVAA---------GVPIGPDLDIHTTLHLDRSTFT----RVPDYLLRV 122
Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
Q SM GD++ ++ Q + G ++ + G++ K L R + L+ N
Sbjct: 123 QGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQRR-ADQVRLLPRNPA 180
Query: 202 YPVDTVEMSD 211
Y V
Sbjct: 181 YEPIIVTPDQ 190
>gi|237728127|ref|ZP_04558608.1| LexA [Citrobacter sp. 30_2]
gi|283836667|ref|ZP_06356408.1| repressor LexA [Citrobacter youngae ATCC 29220]
gi|226910138|gb|EEH96056.1| LexA [Citrobacter sp. 30_2]
gi|291067407|gb|EFE05516.1| repressor LexA [Citrobacter youngae ATCC 29220]
Length = 202
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFKPIVVDLRE 183
>gi|325271052|ref|ZP_08137637.1| hypothetical protein HMPREF9141_2847 [Prevotella multiformis DSM
16608]
gi|324986650|gb|EGC18648.1| hypothetical protein HMPREF9141_2847 [Prevotella multiformis DSM
16608]
Length = 236
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 111 TGNKWNTVGVPEIRSPHNGIYAI-----QTQDTRHKTQDTSMLPLYRKGDIL---ILNSA 162
+ + +S Y I Q D + SM P Y GDI+ I++++
Sbjct: 113 VAAGFGSADFVIAKSDVKEYYVIPKWKRQHVDFMIEVTGDSMQPKYNAGDIVGCTIIHNS 172
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ +I R ++ K L+ S+ +S N YP + +I IA ++
Sbjct: 173 GFIQWNRPHVIATREQGLLIKRLMPGTTTNSLSAVSENTQYPPFDIPKEEITGIALVI 230
>gi|257468732|ref|ZP_05632826.1| repressor LexA [Fusobacterium ulcerans ATCC 49185]
gi|317062987|ref|ZP_07927472.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313688663|gb|EFS25498.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 229
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 48/222 (21%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF-----------------K 60
E + + LA+ G+ + +N +R G R P +E I K
Sbjct: 12 EELGYSQNKLAKTIGITQSYYNTIER----GEVRNPPSEEILDKMIAILQLSDKEAADFK 67
Query: 61 ILAATNET----ICQLLDLPFSDGRTTEKKEKE-------IPLLYFPPSGSGGFFDSGVF 109
LAA +T + +L L + E IPL +G G F
Sbjct: 68 YLAAIEKTPPLILEELKRLEKQKDAPPKADIYELKNFDNYIPLYSRISAGI-GVFTEEG- 125
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P + + +P IR+ ++A+ + SM P + I++ ++V G
Sbjct: 126 PV----DFISIPGIRNID-TLFAVN-------VKGDSMEPTIKNSSIILCRKGVEVRNG- 172
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G+ K L I L+S N Y + +
Sbjct: 173 EIGAFIVNGESYVKRL-KITANYIALISDNPNYQPIYIGPGE 213
>gi|71648700|sp|Q5FNN8|LEXA_GLUOX RecName: Full=LexA repressor
Length = 238
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 19/146 (13%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+++ IPL +G D + + VP YA+
Sbjct: 103 SEASVANDRQTVSIPLYGRIAAGLPIEAMQDDS--------DRIDVPVSLLGTGEHYAL- 153
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM GDI I+ G ++ ++ K L R G I
Sbjct: 154 ------TVAGDSMIEAGILDGDIAIIRRRETAENGQIIVALIDEQEVTLKKLRRR-GSMI 206
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + R++
Sbjct: 207 ALEAANRDYETRIFPAERVHIQGRLV 232
>gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27]
gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27]
Length = 218
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 38/204 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-----SKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ LT LA+KAG+ + +K +K F + ++FK+ AA + L
Sbjct: 13 QKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGD---------TLFKVAAALQCSPQWL 63
Query: 73 LDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
D P++ + + G F + + +
Sbjct: 64 QSGDEKDKHWENNVKSCPQRDTAHSYPVINWVQA---GLFATAGD------DYNMYDQDN 114
Query: 125 SPHNGIYAIQTQDTRHKTQDTSML-PL---YRKGDILILNSAIQVNCGDRLLIKPRT-GD 179
H+ YA + + SM P+ + +G +++N +V G ++ + ++ +
Sbjct: 115 WRHSVKYAGER-GFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNE 173
Query: 180 IVAKVLISRRGRSIDLMSLNCCYP 203
K IS G++ L LN YP
Sbjct: 174 ATFKKYISEMGKAF-LKPLNPQYP 196
>gi|315633588|ref|ZP_07888878.1| LexA repressor [Aggregatibacter segnis ATCC 33393]
gi|315477630|gb|EFU68372.1| LexA repressor [Aggregatibacter segnis ATCC 33393]
Length = 207
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D K SM + GD+L ++S V G ++++ ++ K L + G +
Sbjct: 111 PQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNG-QVVVARIEDEVTVKRLERK-GST 168
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L + N + V+++
Sbjct: 169 VYLHAENEEFAPIVVDLTQ 187
>gi|220923486|ref|YP_002498788.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
gi|219948093|gb|ACL58485.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
Length = 220
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNC--GDRLLIKPRTGDIVAKVLIS 187
+ + ++ SMLP Y GD++I+ + V+ GD L+K G+ K ++
Sbjct: 111 LPDGLSAYEVWGDSMLPRYDPGDLIIVTDQPVPVSRVVGDVALVKTADGNRYLKRVLR 168
>gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
PCA]
gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens
PCA]
gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter
sulfurreducens KN400]
Length = 212
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ P + G YA+ M P R GD+++ + A G+ +L+ R
Sbjct: 115 IVFPGMP---QGCYAVLAY-------GDFMAPTIRDGDMVLFDPARPAAPGEIVLVTNRW 164
Query: 178 GDIVAKVLISRRGRSIDL------MSLNCCYPVD 205
G+ +L R ++ +L + + +P
Sbjct: 165 GE---AILRRYRLKAGELLFSPDNAAYSPFHPDP 195
>gi|15965363|ref|NP_385716.1| LexA repressor [Sinorhizobium meliloti 1021]
gi|307312740|ref|ZP_07592371.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
BL225C]
gi|307317224|ref|ZP_07596665.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
AK83]
gi|25453100|sp|Q92PW3|LEXA_RHIME RecName: Full=LexA repressor
gi|15074543|emb|CAC46189.1| Putative LexA repressor transcription regulator [Sinorhizobium
meliloti 1021]
gi|306897312|gb|EFN28057.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
AK83]
gi|306899465|gb|EFN30097.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
BL225C]
Length = 238
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM GD +I+ + + GD ++
Sbjct: 136 DISVPVEMIGSGEHYALE-------IKGDSMIEAGILDGDTVIIRNGSTASPGDIVVALI 188
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + SI L + N Y ++ R++
Sbjct: 189 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGRLV 231
>gi|227822058|ref|YP_002826029.1| LexA repressor [Sinorhizobium fredii NGR234]
gi|227341058|gb|ACP25276.1| LexA repressor [Sinorhizobium fredii NGR234]
Length = 254
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ VP + YA++ + SM GD +I+ +A + GD ++
Sbjct: 152 EISVPVEMIGNGEHYALE-------IKGDSMIEAGILDGDTVIIRNANTASPGDIVVALI 204
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 205 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 240
>gi|157414969|ref|YP_001482225.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 81116]
gi|157385933|gb|ABV52248.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 81116]
gi|307747607|gb|ADN90877.1| Putative peptidase [Campylobacter jejuni subsp. jejuni M1]
Length = 209
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 14 DRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
D +A NL +A++ G+ P +FN K + I L N +I
Sbjct: 12 DILASEGKCNLKTKDIAKELGIHPDTFNSMKFRNSIPYPQ------ILNFLNQRNISINY 65
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNGI 130
+ + + +I LY + GG G + + ++
Sbjct: 66 FFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLIDSSDLIIDEKVLN 116
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM P+ + G I +++ +I R G + K ++ +
Sbjct: 117 FFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDD 175
Query: 191 RSIDLMSLNCCYPV 204
I L SLN Y
Sbjct: 176 GVI-LHSLNPLYED 188
>gi|84624899|ref|YP_452271.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84368839|dbj|BAE69997.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 201
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
+ P G +G+ ++++ D + Q SM GD++ ++ + +
Sbjct: 86 AAGVPIGA---DIGLERQLWLDRALFSL-RPDYLLQVQGDSMIDDGILDGDLVGVHRSKE 141
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G ++++ G+I K L R I L+ N + V
Sbjct: 142 ARDG-QIVVARVDGEITIKRLERGTER-IRLLPRNRAHAPIVVAADA 186
>gi|331008501|gb|EGH88557.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 202
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 22/165 (13%)
Query: 54 STESIFK--ILAATNETICQLLD----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
S+ S+ + I+A T + +++ + E+P+L +G+
Sbjct: 38 SSRSVARKHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRVAAGA------- 90
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
P G + + + D + Q SM GD++ ++ Q +
Sbjct: 91 --PIGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQAS 144
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G ++ + G++ K L + L+ N Y V
Sbjct: 145 DGQIVVARL-DGEVTIKRLHR-SADQVRLLPRNPAYEPIIVTPDQ 187
>gi|331698894|ref|YP_004335133.1| peptidase S24/S26A/S26B, conserved region [Pseudonocardia
dioxanivorans CB1190]
gi|326953583|gb|AEA27280.1| Peptidase S24/S26A/S26B, conserved region [Pseudonocardia
dioxanivorans CB1190]
Length = 109
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM P GD++I+ V GD +L++ R G + K G + N
Sbjct: 13 VRGPSMSPALTDGDVVIVRFGAPVRAGDVVLVRWASRPGQLSVKRARRPEGEGWWVEGDN 72
Query: 200 C--CYPVDTVEMSDIE 213
T+ ++++
Sbjct: 73 PFGSTDSRTLGPAEVD 88
>gi|269137588|ref|YP_003294288.1| SOS-response transcriptional repressor (RecA-mediated
autopeptidase) [Edwardsiella tarda EIB202]
gi|267983248|gb|ACY83077.1| SOS-response transcriptional repressor (RecA-mediated
autopeptidase) [Edwardsiella tarda EIB202]
gi|304557659|gb|ADM40323.1| SOS-response repressor and protease LexA [Edwardsiella tarda
FL6-60]
Length = 202
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 105 DSGVFP-TGNKWNTVGVPEIRSPH-NGIYAIQ------TQDTRHKTQDTSMLPL-YRKGD 155
D P G G P + H G Y + + D + SM + GD
Sbjct: 72 DETGLPLIGQV--AAGEPLLAQQHIEGFYQVDPSLFKPSADFLLRVNGMSMRDIGILDGD 129
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+L ++ V G ++++ ++ K L + G + L+ N + V++ +
Sbjct: 130 LLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNMVQLLPENSDFQPIVVDLRE 183
>gi|188492331|ref|ZP_02999601.1| bacteriophage CI repressor protein [Escherichia coli 53638]
gi|188487530|gb|EDU62633.1| bacteriophage CI repressor protein [Escherichia coli 53638]
Length = 129
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNK-SKRFGIEGRNRWPSTESIFKILAATNETICQ 71
+D ++++H+L+ S LAR AG+ +S N KR I S +S KI ATN ++
Sbjct: 16 LDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGTI-------SKDSAAKIAEATNVSLSW 68
Query: 72 LLDLPFSDGRTT 83
LL R T
Sbjct: 69 LLTGKEDSNRET 80
>gi|325132394|gb|EGC55087.1| hypothetical protein NMBM6190_0795 [Neisseria meningitidis M6190]
gi|325138383|gb|EGC60951.1| Peptidase S24-like family protein [Neisseria meningitidis ES14902]
gi|325201877|gb|ADY97331.1| Peptidase S24-like family protein [Neisseria meningitidis
M01-240149]
Length = 206
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 56 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 106
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
DTSM P+ KGD+L++ ++ D +LI+ +V L+ + +
Sbjct: 107 ----AMPDTSMSPVIEKGDLLVVEPRMRPADEDIVLIELSDKRLVVAHLVIDIAGRMLIY 162
Query: 197 SLNCCYPVDTVEMSDI 212
+ +
Sbjct: 163 QTGRPSEALDLPEGSV 178
>gi|301155074|emb|CBW14537.1| phage-related repressor protein [Haemophilus parainfluenzae T3T1]
Length = 224
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 7/157 (4%)
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
T E I +L +G+G + PT +
Sbjct: 63 TGEGDPDPSYRIVEVSEPQNPNTVRIDILDVEASAGNGAYLS----PTEQGLLSQEFDLT 118
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
A + SM P GD+L ++ + D L + G K
Sbjct: 119 FFRQQFGRADAKYLKLITVKGDSMAPTLESGDLLYVDISENYFAADGLYVFTFDGQTFIK 178
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA-RIL 219
L + G+ + ++S N Y T D +I R++
Sbjct: 179 RLQ-KVGKEMLVISDNPTYKEWTFTQDDDVFIHGRVI 214
>gi|323189774|gb|EFZ75052.1| repressor protein C2 domain protein [Escherichia coli RN587/1]
gi|327250312|gb|EGE62031.1| repressor protein C2 domain protein [Escherichia coli STEC_7v]
Length = 86
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVD 205
M+ YR GD++ ++ + GD ++ G+ K LI + L +LN +P
Sbjct: 1 MIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEP 59
Query: 206 TV 207
+
Sbjct: 60 YI 61
>gi|294791093|ref|ZP_06756251.1| repressor LexA [Scardovia inopinata F0304]
gi|294458990|gb|EFG27343.1| repressor LexA [Scardovia inopinata F0304]
Length = 264
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
+ + +P+ + ++ ++ SM GD +++ GD ++
Sbjct: 164 DVMRLPQRLTGDGNLFMLE-------VHGDSMIDAAICDGDFVVVREQHTAENGD-IVAA 215
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+ K + + LM N Y
Sbjct: 216 LLDDEATVKTFRKDKSGHLWLMPHNPEYSP 245
>gi|283787278|ref|YP_003367143.1| LexA repressor [Citrobacter rodentium ICC168]
gi|282950732|emb|CBG90408.1| LexA repressor [Citrobacter rodentium ICC168]
Length = 202
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFKPIVVDLRE 183
>gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
Length = 354
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL- 185
++ SM LY G+I+I+ GD ++I G+ K
Sbjct: 250 PQKYFSPAYDYFALTINGDSMNKLYEDGEIIIVRKQNYARNGD-IIIACILGEATCKEYY 308
Query: 186 --ISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ S N Y + +I
Sbjct: 309 FNKDDDKNELIPHSTNPKYKPQSYSNDEI 337
>gi|99081523|ref|YP_613677.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040]
gi|99037803|gb|ABF64415.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040]
Length = 216
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 44/219 (20%), Positives = 71/219 (32%), Gaps = 52/219 (23%)
Query: 15 RMAERHNLTPSGLA---RK--AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
+A + ++ G+ R+ AG D N S SI K+ + +
Sbjct: 23 ALALQSGMSKDGIRNWRRRFEAGDDNAGANVS---------------SISKVASTLGVS- 66
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPHN 128
+L L T I + +GS FD+ G V P PH
Sbjct: 67 -ELWLLHGIGESKTP----TISIAGKVGAGSQVPVFDAYEKGDGP---QVECPPGIGPH- 117
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR---TGDIVAKVL 185
G+ A++ + SM P+Y GD+L + + D ++ D + V
Sbjct: 118 GVVAVE-------VEGDSMEPVYSAGDLLFYSRNGHDSVPDDVVGYKCVCEDADGMGWVK 170
Query: 186 ISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
+ L+SLN W R+ WA
Sbjct: 171 QVKAGDEPGLFHLISLNPTGAN--------MWNVRLKWA 201
>gi|313114406|ref|ZP_07799934.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623277|gb|EFQ06704.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255]
Length = 205
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
E + L T + L G ++PL+ G+ P +
Sbjct: 50 EELAAALETTPAYLLGLDTPCPPPGFEPLPAMTQVPLIGSIACGT---------PITAEQ 100
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
N + + +A+ SM P GDI+ + +V G+ ++
Sbjct: 101 NIERYIGVPAAWRADFAL-------TCHGDSMSPTICDGDIVCIRCQPEVEQGEIAAVRI 153
Query: 176 RTGDIVAKVLISR 188
G+ K +
Sbjct: 154 -GGEATLKHFHRQ 165
>gi|157148065|ref|YP_001455384.1| LexA repressor [Citrobacter koseri ATCC BAA-895]
gi|166224566|sp|A8AN85|LEXA_CITK8 RecName: Full=LexA repressor
gi|157085270|gb|ABV14948.1| hypothetical protein CKO_03872 [Citrobacter koseri ATCC BAA-895]
Length = 202
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFKPIVVDLRE 183
>gi|78357023|ref|YP_388472.1| transcriptional regulator [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219428|gb|ABB38777.1| transcriptional regulator, putative [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 219
Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM P GD ++++ Q + ++ K + S +
Sbjct: 125 PADMVLMDVVGDSMEPEIFAGDTVLVDQGNQTLRNGAIFAMGVDDSVLVKRVQSA-PEGL 183
Query: 194 DLMSLNCCYPVDTVEMSDIEW---IARILWAS 222
L+S N Y ++ +IE I +++W S
Sbjct: 184 VLLSENPSYSPVLLQGDEIETVRVIGKVIWIS 215
>gi|237752435|ref|ZP_04582915.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375924|gb|EEO26015.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 209
Score = 40.7 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 26/212 (12%)
Query: 14 DRMAERHNLTPSGL--ARKAGLDPTSFNKSK-RFGIEGRNRWPSTESIFKILAATNETIC 70
D +A + + A+ + P +FN K R I + I L N +I
Sbjct: 12 DILASEGQKSVKTIDVAKALNIHPDTFNSMKFRNSIPYKQ-------ILNFLEKRNISIN 64
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
+ + I LY + GG G V EI + +
Sbjct: 65 YFFFGSSPKESLQSEDKYRILKLYKTNASLGG---------GGINEFVECQEIIIDNALL 115
Query: 131 YAIQTQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLL--IKPRTGDIVAKVLIS 187
+ Q+Q+ T SM P+ + G I +L+ D+ + + R G + K +
Sbjct: 116 HFFQSQNCELITSFGESMEPIIKDGSICVLDKIKPFK--DKGIYGVNTREG-LFVKQVFK 172
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ I L SLN Y E + I R++
Sbjct: 173 QENGVI-LHSLNPIYQDLFFENGEYLIIGRVI 203
>gi|227534620|ref|ZP_03964669.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227187721|gb|EEI67788.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 277
Score = 40.7 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
+G G F D P +TV +P+ P + Y K SM P Y
Sbjct: 149 GIVAAGYGAFNDDRNEPM----DTVKIPDSAIPSHYDYC-------FKVVGDSMHPTYDD 197
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
G+++ + V G ++ + K++ + L SLN
Sbjct: 198 GELVFVQKTQDVTNGMIAVVDIDDMTFIKKLIFEEN--RLCLRSLNDD 243
>gi|261378025|ref|ZP_05982598.1| putative repressor protein [Neisseria cinerea ATCC 14685]
gi|269145901|gb|EEZ72319.1| putative repressor protein [Neisseria cinerea ATCC 14685]
Length = 228
Score = 40.7 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 18/184 (9%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-------- 104
P +E++ KI +I LL + + K + F F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLTG-EGEPFPGGNQVKSVAYDTFGNEVDTDEFVFVPRYDI 100
Query: 105 -DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR---HKTQDTSMLPLYRKGDILILN 160
+ + H + + SM + GD +++N
Sbjct: 101 RAAAGYGQFVGHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGDTILVN 160
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSDIEWIA 216
D L + +++ K L G I+++S N YP + D+E I
Sbjct: 161 HGENTPK-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNNLTDDVEIIG 219
Query: 217 RILW 220
R+ W
Sbjct: 220 RVEW 223
>gi|323940227|gb|EGB36420.1| peptidase S24 [Escherichia coli E482]
Length = 127
Score = 40.7 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 32 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 89
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 90 VELLPENSEFKPIVVDLRQ 108
>gi|153951225|ref|YP_001397532.1| putative phage repressor protein [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938671|gb|ABS43412.1| putative phage repressor protein [Campylobacter jejuni subsp.
doylei 269.97]
Length = 244
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLISR 188
I+ K SM P+ GD +I++ + ++ D ++ + D+ K +
Sbjct: 135 IKKSYDIIKINGDSMEPILSNGDFIIVDRSKNSLGAISNADIVIFRKND-DLFCKKIKKE 193
Query: 189 RGRS-IDLMSLNCCYPVDTVEMSDIE 213
I L+S N Y V+ + E
Sbjct: 194 PFEDYIFLVSENKKYEDRKVDNVEFE 219
>gi|50955638|ref|YP_062926.1| type I signal peptidase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952120|gb|AAT89821.1| type I signal peptidase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 184
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPR 176
+ T TSM+P Y++GDIL+++ A + GD +++ P
Sbjct: 24 LSTNGYYVTVNGTSMVPTYQRGDILLVSRAIDASALRAGDIVVVDPA 70
>gi|313115948|ref|ZP_07801375.1| peptidase S24-like domain protein [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310621712|gb|EFQ05240.1| peptidase S24-like domain protein [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 275
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
E +P+ P S G F G + + VP P + I
Sbjct: 129 DTEEPAEIDYIMMPVSELPVSAGLGAFLE-----GEMFQQIQVPASSVPAGAEFGI---- 179
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
SM P Y G I+ + ++ CGD
Sbjct: 180 ---YVSGDSMEPRYHSGQIVWVKRCEELECGD 208
>gi|261493123|ref|ZP_05989659.1| hypothetical protein COK_1537 [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496454|ref|ZP_05992837.1| hypothetical protein COI_2175 [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307887|gb|EEY09207.1| hypothetical protein COI_2175 [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261311211|gb|EEY12378.1| hypothetical protein COK_1537 [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 219
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 35/211 (16%)
Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN---ETICQLL 73
AER ++ SGL + N+S R P+ + I K+L T+
Sbjct: 24 AERVGVSSSGLG-------SWLNES---------RVPNLDQIAKMLYLVGIDSVTLHSAD 67
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSPHNGIY- 131
L K + +P+ FP GN + +
Sbjct: 68 CLMSVRESYKLNKIEGVPVKGSLAF---------GFPEMGNAVEKATLKTAEQKQFIDFR 118
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA----KVLIS 187
A + ++ T++ P R+ + ++++ + D +L+ + + A L
Sbjct: 119 ASSPRSEAYQILGTALSPRIRRNEFVVIDPNKKPLETDEVLVYFKETEEYAIKRLVELAK 178
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ G + L LN VE I + RI
Sbjct: 179 KEGDPVFLADLNQDMLRMAVEEDAIT-MYRI 208
>gi|156147239|gb|ABU53817.1| cje0215 [Campylobacter phage CGC-2007]
gi|321442478|gb|ADW85791.1| phage repressor protein, putative [Campylobacter jejuni]
Length = 113
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL + G I +++ +I R G + K ++ + I L SLN Y
Sbjct: 34 GESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDDGVI-LHSLNPLYE 91
Query: 204 V 204
Sbjct: 92 D 92
>gi|156147187|gb|ABU53768.1| cje0215 [Campylobacter phage CGC-2007]
Length = 111
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL + G I +++ +I R G + K ++ + I L SLN Y
Sbjct: 32 GESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDDGVI-LHSLNPLYE 89
Query: 204 V 204
Sbjct: 90 D 90
>gi|126652284|ref|ZP_01724460.1| SipS [Bacillus sp. B14905]
gi|126590859|gb|EAZ84972.1| SipS [Bacillus sp. B14905]
Length = 188
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRS 192
Q K Q SM P Y D++I++ ++ D+++ + P ++ K +I G
Sbjct: 34 QFLFAPIKVQGASMYPTYHDKDVIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGVPGDK 93
Query: 193 IDL 195
+++
Sbjct: 94 VEM 96
>gi|168763653|ref|ZP_02788660.1| putative bacteriophage CI repressor protein [Escherichia coli
O157:H7 str. EC4501]
gi|217329478|ref|ZP_03445558.1| putative bacteriophage CI repressor protein [Escherichia coli
O157:H7 str. TW14588]
gi|261227077|ref|ZP_05941358.1| hypothetical protein EscherichiacoliO157_21146 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261254667|ref|ZP_05947200.1| hypothetical protein EscherichiacoliO157EcO_02435 [Escherichia
coli O157:H7 str. FRIK966]
gi|189366252|gb|EDU84668.1| putative bacteriophage CI repressor protein [Escherichia coli
O157:H7 str. EC4501]
gi|217317917|gb|EEC26345.1| putative bacteriophage CI repressor protein [Escherichia coli
O157:H7 str. TW14588]
gi|323190793|gb|EFZ76062.1| bacteriophage CI repressor helix-turn-helix domain protein
[Escherichia coli RN587/1]
Length = 129
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNK-SKRFGIEGRNRWPSTESIFKILAATNETIC 70
+D ++++H+L+ S LAR AG+ +S N KR I S +S KI ATN ++
Sbjct: 16 LDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGTI-------SKDSAAKIAEATNVSLS 67
>gi|292489790|ref|YP_003532680.1| regulator for SOS(LexA) regulon [Erwinia amylovora CFBP1430]
gi|292897996|ref|YP_003537365.1| LexA repressor [Erwinia amylovora ATCC 49946]
gi|291197844|emb|CBJ44939.1| LexA repressor [Erwinia amylovora ATCC 49946]
gi|291555227|emb|CBA23483.1| regulator for SOS(LexA) regulon [Erwinia amylovora CFBP1430]
gi|312173975|emb|CBX82229.1| regulator for SOS(LexA) regulon [Erwinia amylovora ATCC BAA-2158]
Length = 202
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G +++ ++ K L + G
Sbjct: 107 PGADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQ-VVVARIDDEVTVKRL-KKNGNM 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENPEFQPIVVDLRQ 183
>gi|257426151|ref|ZP_05602567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428811|ref|ZP_05605206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431422|ref|ZP_05607796.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257434133|ref|ZP_05610484.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257437044|ref|ZP_05613085.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282914858|ref|ZP_06322639.1| probable transcriptional repressor [Staphylococcus aureus subsp.
aureus M899]
gi|282925355|ref|ZP_06333011.1| hypothetical protein SARG_02518 [Staphylococcus aureus subsp.
aureus C101]
gi|293507872|ref|ZP_06667714.1| hypothetical protein SCAG_02388 [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510844|ref|ZP_06669544.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
M809]
gi|293545444|ref|ZP_06672120.1| probable transcriptional repressor [Staphylococcus aureus subsp.
aureus M1015]
gi|257271059|gb|EEV03228.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274455|gb|EEV05967.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277868|gb|EEV08532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281059|gb|EEV11203.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283638|gb|EEV13764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282312989|gb|EFB43389.1| hypothetical protein SARG_02518 [Staphylococcus aureus subsp.
aureus C101]
gi|282321252|gb|EFB51582.1| probable transcriptional repressor [Staphylococcus aureus subsp.
aureus M899]
gi|290919755|gb|EFD96827.1| probable transcriptional repressor [Staphylococcus aureus subsp.
aureus M1015]
gi|291094935|gb|EFE25203.1| hypothetical protein SCAG_02388 [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466316|gb|EFF08842.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
M809]
Length = 210
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
S P + N + + + ++ + SM L+++GD++++ V
Sbjct: 91 SAGMPIYAEENLIDYIYFATKNLSS---NKEEFGLQVSGDSMDKLFQEGDVVVVEKDSTV 147
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDL-MSLNCCYPVDTVEM-SDIEWIARILWASQ 223
G ++ + K + + I + S N + +I+ + R++ ASQ
Sbjct: 148 ENGQLGVVLVNGYNGTVKRIRYNNDQIILIPESNNPSHYPQVYGKDDEIKIVGRVV-ASQ 206
>gi|172045704|sp|Q2K8X2|LEXA_RHIEC RecName: Full=LexA repressor
Length = 239
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 137 DIVVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 225
>gi|146309913|ref|YP_001174987.1| LexA repressor [Enterobacter sp. 638]
gi|166990801|sp|A4W5F6|LEXA_ENT38 RecName: Full=LexA repressor
gi|145316789|gb|ABP58936.1| SOS-response transcriptional repressor, LexA [Enterobacter sp. 638]
Length = 202
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENSEFSPIVVDLRE 183
>gi|327409424|ref|YP_004301566.1| gp32 [Brochothrix phage BL3]
gi|296245500|gb|ADH03113.1| gp32 [Brochothrix phage BL3]
Length = 228
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
D Q SM PL G I+ +V G+ ++ + K + +I L
Sbjct: 143 ADCALVIQGDSMEPLLHDGSIVFYKQQPEVENGEIAIVDIDGNGVTCKKVYFNYDDNIVL 202
Query: 196 M-SLNCCYPVDTVEMSDIEWIARIL 219
+ SLN Y + + I +++
Sbjct: 203 LKSLNEKYDDRELSPERVRIIGKVV 227
>gi|229829013|ref|ZP_04455082.1| hypothetical protein GCWU000342_01098 [Shuttleworthia satelles DSM
14600]
gi|229792176|gb|EEP28290.1| hypothetical protein GCWU000342_01098 [Shuttleworthia satelles DSM
14600]
Length = 207
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRT---GDIV 181
+ + + +SM P R GD +++N + GD ++ +P +
Sbjct: 52 AFFLVFSFGRTITISSSSMEPTLRAGDRVLVNRLVYHIRKPRAGDLVVFRPSGRQNAQYM 111
Query: 182 AKVLISRRGRSI 193
K LI+R G ++
Sbjct: 112 VKRLIARPGDTV 123
>gi|303245282|ref|ZP_07331566.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
fructosovorans JJ]
gi|302493131|gb|EFL52993.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
fructosovorans JJ]
Length = 142
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + ++ A + SM + GDIL+++ A +
Sbjct: 26 SAGFPS-PAEDYLD--QALDLNDLCIAHPAATFYVRASGESMRGAGIQSGDILVVDRAEE 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R++I G++ K L GR L N Y +
Sbjct: 83 ARPG-RIVIAAVDGELTVKRLKHMDGRLF-LAPENDAYKPIEIRPES 127
>gi|261341541|ref|ZP_05969399.1| repressor LexA [Enterobacter cancerogenus ATCC 35316]
gi|288316340|gb|EFC55278.1| repressor LexA [Enterobacter cancerogenus ATCC 35316]
Length = 202
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENNEFTPIVVDLRE 183
>gi|156147117|gb|ABU53702.1| cje0215 [Campylobacter phage CGC-2007]
Length = 113
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL + G I +++ +I R G + K ++ + I L SLN Y
Sbjct: 34 GESMEPLIKDGSICVIDRNKAFKNKSICVINTRDG-LFIKQVLKQDDGVI-LHSLNPLYK 91
Query: 204 V 204
Sbjct: 92 D 92
>gi|95929179|ref|ZP_01311923.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684]
gi|95134677|gb|EAT16332.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684]
Length = 143
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ Q SM GD+L+++ ++ GD ++I G++ K L +
Sbjct: 50 PAATYFVRVQGDSMIEAGIFPGDVLVVDRSLAAQHGD-IVIAALNGELTVKKLE--TSST 106
Query: 193 IDLMSLNCCYPVDTVE 208
L+ +N + +
Sbjct: 107 TRLVPMNKQHQAIEIP 122
>gi|296100669|ref|YP_003610815.1| LexA repressor [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295055128|gb|ADF59866.1| LexA repressor [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 202
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENNEFSPIVVDLRE 183
>gi|264678971|ref|YP_003278878.1| SOS-response transcriptional repressor, LexA [Comamonas
testosteroni CNB-2]
gi|262209484|gb|ACY33582.1| SOS-response transcriptional repressor, LexA [Comamonas
testosteroni CNB-2]
Length = 223
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + + + G ++ + D+ K + I+L+ N Y + V+ +
Sbjct: 149 DGDLLAVQATHEARNGQIVVARLGD-DVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205
>gi|222150840|ref|YP_002559993.1| type-I signal peptidase SipB homolog [Macrococcus caseolyticus
JCSC5402]
gi|222119962|dbj|BAH17297.1| type-I signal peptidase SipB homolog [Macrococcus caseolyticus
JCSC5402]
Length = 182
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ SM P + GD +I+N ++ GD ++ + K +I + G ++
Sbjct: 30 YSVSGDSMYPTFTDGDKVIVNKMSTLHHGDVIVFHTGSTQDYVKRIIGKPGDKVEYR 86
>gi|330985358|gb|EGH83461.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 202
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ R + + E+P+L +G+ P
Sbjct: 41 SVARKHIMALTEAGLIEVVAHQARGIRLLHSEPRPELLELPVLGRVAAGA---------P 91
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 92 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 147
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L + L+ N Y V
Sbjct: 148 IVVARL-DGEVTIKRLHR-SADQVRLLPRNPAYEPIIVTPDQ 187
>gi|160893916|ref|ZP_02074695.1| hypothetical protein CLOL250_01471 [Clostridium sp. L2-50]
gi|156864294|gb|EDO57725.1| hypothetical protein CLOL250_01471 [Clostridium sp. L2-50]
Length = 147
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
+G+G F + G P + + K SM P + GDI
Sbjct: 30 AGTGNFLEDG-------------PSRTLNIDEALLPENTSFGVKISGDSMEPEFHDGDIA 76
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ V G + I GD K L I L+SLN Y V +D
Sbjct: 77 WVVKQETVENG-EIGIFSLNGDAYIKKL-REDKEGIFLVSLNKKYAPIRVSEND 128
>gi|311107150|ref|YP_003980003.1| LexA repressor [Achromobacter xylosoxidans A8]
gi|310761839|gb|ADP17288.1| LexA repressor [Achromobacter xylosoxidans A8]
Length = 216
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 134 QTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
Q D K + SM R GD+L + A + G ++ + D+ K L +
Sbjct: 122 QAPDYLLKVRGMSM----RDAGILEGDLLAVKKASEARNGQIVVARLGD-DVTVKRLQRQ 176
Query: 189 RGRSIDLMSLNCCYPVDTVEMSD 211
G I+L+ N + VE
Sbjct: 177 NG-HIELLPENPDFEPIVVEAGQ 198
>gi|256076613|ref|XP_002574605.1| signalase (S26 family) [Schistosoma mansoni]
gi|238659815|emb|CAZ30838.1| signalase (S26 family) [Schistosoma mansoni]
Length = 183
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKV----LISR 188
++ SM P + +GD+L L + GD ++ K +I L
Sbjct: 47 SESPLVVVLSGSMEPAFHRGDVLYLTNYPNEPIRVGDIVVFKIEGREIPIVHRVLRLHEN 106
Query: 189 RGRSIDLMSLNCCYP--VDTVEMSDIEWI 215
SI ++ P + +W+
Sbjct: 107 VNGSIKFLTKGDNNPVHDRGLYAPGQDWL 135
>gi|259909947|ref|YP_002650303.1| LexA repressor [Erwinia pyrifoliae Ep1/96]
gi|224965569|emb|CAX57101.1| LexA repressor [Erwinia pyrifoliae Ep1/96]
gi|283480043|emb|CAY75959.1| regulator for SOS(LexA) regulon [Erwinia pyrifoliae DSM 12163]
gi|310765542|gb|ADP10492.1| LexA repressor [Erwinia sp. Ejp617]
Length = 202
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G +++ ++ K L + G
Sbjct: 107 PGADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQ-VVVARIDDEVTVKRL-KKNGNM 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENPAFQPIVVDLRQ 183
>gi|71083618|ref|YP_266337.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1062]
gi|91761961|ref|ZP_01263926.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1002]
gi|123775507|sp|Q4FM55|LEXA_PELUB RecName: Full=LexA repressor
gi|71062731|gb|AAZ21734.1| repressor LexA [Candidatus Pelagibacter ubique HTCC1062]
gi|91717763|gb|EAS84413.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1002]
Length = 225
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 21/138 (15%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQT 135
D T E EIP+L +G+ P N + +P + + +
Sbjct: 92 DTENTNLNEMEIPVLGSIAAGT---------PVEAIQNEVSRIPLPSNLEKNGQYFGL-- 140
Query: 136 QDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
K Q SM +GD +I+ + + G ++ + + K + + G+++
Sbjct: 141 -----KVQGDSMIEAGINEGDTVIIKRSDTADNGKIVVALIDEHEAMLKRIRRK-GKTVA 194
Query: 195 LMSLNCCYPVDTVEMSDI 212
L S N Y +
Sbjct: 195 LESANRNYETKIFGPDRV 212
>gi|327189236|gb|EGE56415.1| transcriptional regulator repressor protein LexA protein [Rhizobium
etli CNPAF512]
Length = 239
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 137 DIVVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 225
>gi|227514727|ref|ZP_03944776.1| repressor LexA family protein [Lactobacillus fermentum ATCC 14931]
gi|227086931|gb|EEI22243.1| repressor LexA family protein [Lactobacillus fermentum ATCC 14931]
Length = 199
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 24/154 (15%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
S + L T + L K+ +IPLL +G + +
Sbjct: 52 PSKPRALEITPAGLEVL---------GITPKQTQIPLLGVVAAG------EPILAVQDAT 96
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
+ +P H+ ++ + Q TSM+ + GD +I+ N GD ++
Sbjct: 97 DFFPIPPSIPDHDDLFML-------TIQGTSMINIGILNGDKVIVRRQETANNGDIVIAM 149
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+ K +G I L N ++
Sbjct: 150 TSDNEATCKRFFKEQG-HIRLQPENDTLAPIILD 182
>gi|190891622|ref|YP_001978164.1| transcriptional regulator repressor protein LexA protein [Rhizobium
etli CIAT 652]
gi|229621743|sp|B3PYQ7|LEXA_RHIE6 RecName: Full=LexA repressor
gi|190696901|gb|ACE90986.1| transcriptional regulator repressor protein LexA protein [Rhizobium
etli CIAT 652]
Length = 239
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 137 DIVVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 225
>gi|184155184|ref|YP_001843524.1| LexA repressor [Lactobacillus fermentum IFO 3956]
gi|260662316|ref|ZP_05863212.1| LexA repressor [Lactobacillus fermentum 28-3-CHN]
gi|229621218|sp|B2GBL2|LEXA_LACF3 RecName: Full=LexA repressor
gi|183226528|dbj|BAG27044.1| transcriptional repressor [Lactobacillus fermentum IFO 3956]
gi|260553699|gb|EEX26591.1| LexA repressor [Lactobacillus fermentum 28-3-CHN]
gi|299783097|gb|ADJ41095.1| LexA repressor [Lactobacillus fermentum CECT 5716]
Length = 208
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 24/154 (15%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
S + L T + L K+ +IPLL +G + +
Sbjct: 61 PSKPRALEITPAGLEVL---------GITPKQTQIPLLGVVAAG------EPILAVQDAT 105
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
+ +P H+ ++ + Q TSM+ + GD +I+ N GD ++
Sbjct: 106 DFFPIPPSIPDHDDLFML-------TIQGTSMINIGILNGDKVIVRRQETANNGDIVIAM 158
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+ K +G I L N ++
Sbjct: 159 TSDNEATCKRFFKEQG-HIRLQPENDTLAPIILD 191
>gi|296534190|ref|ZP_06896677.1| prophage MuMc02 [Roseomonas cervicalis ATCC 49957]
gi|296265462|gb|EFH11600.1| prophage MuMc02 [Roseomonas cervicalis ATCC 49957]
Length = 266
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P GD LI+++ + D + + ++ K + + I ++S N +
Sbjct: 180 GNSMSPTINDGDTLIIDTKVVEANSDGIYVLSVRNGLMVKRIQLQIDGDILVISDNPSFE 239
Query: 204 VDTVEMSDIEWIARIL----WA 221
++ SD + + RI+ WA
Sbjct: 240 PKRIQASDFDAM-RIVGQVLWA 260
>gi|83311965|ref|YP_422229.1| LexA repressor [Magnetospirillum magneticum AMB-1]
gi|123740455|sp|Q2W3A5|LEXA_MAGMM RecName: Full=LexA repressor
gi|82946806|dbj|BAE51670.1| LexA repressor [Magnetospirillum magneticum AMB-1]
Length = 235
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 19/150 (12%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
+PL +G+ D N+V +P
Sbjct: 96 ASQLAGAPVAGPSDSVTLPLYGKIAAGTPIEALRDHS--------NSVDIPASMLGSGNH 147
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
YA+ SM GD +++ S G ++ ++ K L +
Sbjct: 148 YAL-------TVDGDSMIEAGINDGDTVVIRSCDSAETGTIVVALVDDTEVTLKRLRRK- 199
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G S+ L N Y + ++ R++
Sbjct: 200 GTSVALEPANKAYETRVLPPDRVKVQGRLV 229
>gi|221066455|ref|ZP_03542560.1| SOS-response transcriptional repressor, LexA [Comamonas
testosteroni KF-1]
gi|220711478|gb|EED66846.1| SOS-response transcriptional repressor, LexA [Comamonas
testosteroni KF-1]
Length = 223
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + + + G ++ + D+ K + I+L+ N Y + V+ +
Sbjct: 149 DGDLLAVQATHEARNGQIVVARLGD-DVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205
>gi|299530066|ref|ZP_07043493.1| LexA repressor [Comamonas testosteroni S44]
gi|298722046|gb|EFI62976.1| LexA repressor [Comamonas testosteroni S44]
Length = 223
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + + + G ++ + D+ K + I+L+ N Y + V+ +
Sbjct: 149 DGDLLAVQATHEARNGQIVVARLGD-DVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205
>gi|209549197|ref|YP_002281114.1| LexA repressor [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|226694237|sp|B5ZN98|LEXA_RHILW RecName: Full=LexA repressor
gi|209534953|gb|ACI54888.1| SOS-response transcriptional repressor, LexA [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 239
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 137 DIVVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 225
>gi|301167041|emb|CBW26620.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
complex with UmuC [Bacteriovorax marinus SJ]
Length = 143
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ SMLP + GDILI++ + +V + + + K L I L
Sbjct: 53 STFFVRASGDSMLPEIKNGDILIVDRSYKVLDQSIVAVFHNGNPLCKKFLQREN--HILL 110
Query: 196 MSLNCCYPVDTV 207
SLN Y +
Sbjct: 111 RSLNKKYSDIQI 122
>gi|220936308|ref|YP_002515207.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
gi|219997618|gb|ACL74220.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
Length = 154
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 40/167 (23%)
Query: 49 RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
R WP + P EIPLL + +
Sbjct: 13 RPVWP-------------AGMEDFEAAPVDTC--------EIPLLG---------WVAAG 42
Query: 109 FPTG--NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
P + V VP N YA++ + + + GDI+++
Sbjct: 43 LPVDLCSNEERVSVPAHMVRRNT-YALRVRGHSMIDDN------IQDGDIIVVERRQSAE 95
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
G ++ + K R I L N + +IE
Sbjct: 96 NGQTVVAMINGEQVTLKKFYVER-EGIRLQPANPDMEPIILRNEEIE 141
>gi|284009387|emb|CBA76574.1| phage transcriptional regulator [Arsenophonus nasoniae]
Length = 248
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV-AKVLISRRGR 191
+ ++ SM P+ G ++ +++ + D + + D++ K+L
Sbjct: 154 LPSEAMSFPVHGDSMSPVIPSGAVVTISTGHK-KIVDGAIYAIKQADLLRVKILRRLPNS 212
Query: 192 SIDLMSLNC-CYPVDTVEMSDIEWIARIL-WA 221
+ + S N YP + + DIE I R+ W+
Sbjct: 213 KVIIKSYNSIDYPDEEANLDDIEIIGRVFNWS 244
>gi|299067105|emb|CBJ38301.1| putative phage repressor [Ralstonia solanacearum CMR15]
Length = 265
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 12/118 (10%)
Query: 106 SGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
GN T +P + + K SM P D +++
Sbjct: 133 DVELSAGNGRETWHIEEKEPLPFQADYIRRLDSKPKDLVAAKVNGDSMEPRLFDNDTVVV 192
Query: 160 NSA---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE 213
+ A + N G + G+++ K L + ++S N Y TV +E
Sbjct: 193 DKADTRVPANGG--VFALVYAGELLVKRLFRLPDGGLKVVSDNQARYEPVTVGPDQVE 248
>gi|254672940|emb|CBA07333.1| hypothetical protein NMW_1158 [Neisseria meningitidis alpha275]
Length = 239
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 89 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 139
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
DTSM P+ KGD++++ ++ D +LI+ +V L
Sbjct: 140 ----AMPDTSMSPVIEKGDLVVVEPRMRPADEDIVLIELSDKRLVVAHL 184
>gi|229083181|ref|ZP_04215564.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2]
gi|228700099|gb|EEL52702.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2]
Length = 214
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 39/214 (18%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---------SIFKILA 63
+ ++ +++N+T LA + T+ RW + E I KIL
Sbjct: 8 LSQLMKKNNMTDEQLAELLSVSRTT-----------VLRWRNGERSPKMSKISQIAKILN 56
Query: 64 ATNETICQLLDLPFSDGRTTEKKE---KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
+ + ++ E + IP+ + P N +G
Sbjct: 57 VSATYF-----IDENESYCPEDHAITKRNIPIYGTIAA---------GKPIEAIENVIGD 102
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
++ Y + + + SM + G I +L +N GD + D
Sbjct: 103 IQVPDIILDKYGFE-KLLALRINGDSMNRIVHDGHIAVLERTTNINNGDIAAVLINGYDA 161
Query: 181 VAKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIE 213
K + R I + S N + +DIE
Sbjct: 162 TLKRIYKTNNRIILEPDSFNPSIHPLMFDCTDIE 195
>gi|16760940|ref|NP_456557.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29141368|ref|NP_804710.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56413091|ref|YP_150166.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180571|ref|YP_216988.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161613428|ref|YP_001587393.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552766|ref|ZP_02346517.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|168234173|ref|ZP_02659231.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|168239241|ref|ZP_02664299.1| protein UmuD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168244852|ref|ZP_02669784.1| protein UmuD [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168259712|ref|ZP_02681685.1| protein UmuD [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|168462457|ref|ZP_02696388.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|194443595|ref|YP_002041263.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194448647|ref|YP_002046049.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194469768|ref|ZP_03075752.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194736107|ref|YP_002115033.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197264643|ref|ZP_03164717.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197362017|ref|YP_002141654.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|200390791|ref|ZP_03217402.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|213053457|ref|ZP_03346335.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213420231|ref|ZP_03353297.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213426671|ref|ZP_03359421.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213580606|ref|ZP_03362432.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213622953|ref|ZP_03375736.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213648749|ref|ZP_03378802.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852544|ref|ZP_03382076.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224583505|ref|YP_002637303.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|289806023|ref|ZP_06536652.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289823799|ref|ZP_06543411.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25300632|pir||AF0755 UmuD protein (EC 3.4.21.-) [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16503237|emb|CAD05745.1| UmuD protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29136995|gb|AAO68559.1| UmuD protein [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56127348|gb|AAV76854.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|62128204|gb|AAX65907.1| error-prone repair: SOS-response transcriptional repressors (LexA
homologs, RecA-mediated autopeptidases) [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161362792|gb|ABX66560.1| hypothetical protein SPAB_01144 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402258|gb|ACF62480.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194406951|gb|ACF67170.1| protein UmuD [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194456132|gb|EDX44971.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194711609|gb|ACF90830.1| protein UmuD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195634087|gb|EDX52439.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197093494|emb|CAR58954.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
gi|197242898|gb|EDY25518.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197288061|gb|EDY27448.1| protein UmuD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|199603236|gb|EDZ01782.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205322612|gb|EDZ10451.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205331856|gb|EDZ18620.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|205336376|gb|EDZ23140.1| protein UmuD [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205350842|gb|EDZ37473.1| protein UmuD [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|224468032|gb|ACN45862.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|322616990|gb|EFY13898.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618230|gb|EFY15122.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625900|gb|EFY22719.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626352|gb|EFY23162.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632767|gb|EFY29512.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322639109|gb|EFY35802.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640381|gb|EFY37038.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647214|gb|EFY43713.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648413|gb|EFY44866.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655546|gb|EFY51854.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660324|gb|EFY56562.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663005|gb|EFY59212.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668190|gb|EFY64349.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674051|gb|EFY70145.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675597|gb|EFY71671.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682992|gb|EFY79008.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686686|gb|EFY82664.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322715047|gb|EFZ06618.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323195073|gb|EFZ80257.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197873|gb|EFZ82998.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204482|gb|EFZ89488.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207572|gb|EFZ92520.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323210989|gb|EFZ95849.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217557|gb|EGA02276.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219153|gb|EGA03651.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227479|gb|EGA11641.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231579|gb|EGA15692.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236022|gb|EGA20101.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240592|gb|EGA24635.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245484|gb|EGA29484.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247602|gb|EGA31553.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254432|gb|EGA38248.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257758|gb|EGA41438.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263557|gb|EGA47080.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266258|gb|EGA49748.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270735|gb|EGA54174.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 139
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-L 148
IPL +F + FP+ + + + + + + + K SM
Sbjct: 13 IPLPFFS------YLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKATGDSMIE 63
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD+L+++S+ + GD ++I G+ K L R ++ L+ +N Y V
Sbjct: 64 AGISDGDLLVVDSSRNADHGD-IVIAAIEGEFTVKRLQLRP--TVQLIPMNGAYRPIPVG 120
Query: 209 MSD 211
D
Sbjct: 121 SED 123
>gi|304322192|ref|YP_003855835.1| LexA repressor [Parvularcula bermudensis HTCC2503]
gi|303301094|gb|ADM10693.1| LexA repressor [Parvularcula bermudensis HTCC2503]
Length = 229
Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 37/145 (25%), Gaps = 17/145 (11%)
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPHN 128
R T P G + P + V VP
Sbjct: 85 FAPRVIDGSRPTPPP----PASDLTEISVLGKI-AAGTPITAIQHEQARVQVPPSMLRSG 139
Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+A++ SM GD +I+ GD ++ + K L
Sbjct: 140 EHFALE-------VAGDSMIEAGIFDGDTVIIQRCDDATNGDIVVALVEDEEATLKYL-R 191
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI 212
+RG SI L N Y +
Sbjct: 192 KRGNSIALEPANAAYETRIFGADQV 216
>gi|332098137|gb|EGJ03110.1| protein umuD [Shigella dysenteriae 155-74]
Length = 79
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+LI++SAI + GD ++I G+ K L R ++ L+ +N Y T+ D
Sbjct: 8 DGDLLIVDSAITASHGD-IVIAAVDGEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 63
>gi|295095411|emb|CBK84501.1| SOS-response transcriptional repressor, LexA [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 202
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENNEFSPIVVDLRE 183
>gi|126726370|ref|ZP_01742211.1| LexA repressor [Rhodobacterales bacterium HTCC2150]
gi|126704233|gb|EBA03325.1| LexA repressor [Rhodobacterales bacterium HTCC2150]
Length = 232
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 16/146 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQ 134
P + ++I +L +G + + V VP G YA++
Sbjct: 95 PPAALDVEPINARDISILGRIAAG------DPIEALDHGPQNVAVPGHMMEKGGNHYALE 148
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM+ GDI+++ + GD ++ K L+ + G I
Sbjct: 149 -------VKGDSMIDAGINNGDIVVIREQNTADNGDIVVALIEGETATLKRLMRKNG-MI 200
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + + + R++
Sbjct: 201 ALEAANPAYETRFLPDNQVAVQGRLV 226
>gi|289541374|gb|ADD09810.1| period [Branchiostoma belcheri]
Length = 204
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 66 NETICQLLDLPFSD-GRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEI 123
+ Q + T + +P++ GFF F + + P +
Sbjct: 95 GMPVPQFMQGMQGGMPPTGQPMMGSVPMMPMAQNFMYSGFFPHYGFSSAGGFTVPTTPSM 154
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
+ P Q Q M PL+ D L+ +Q+
Sbjct: 155 QIPQGSSIWTQVPQRPLFHQGGGMQPLHINTDPGTLSPTVQME 197
>gi|218886771|ref|YP_002436092.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757725|gb|ACL08624.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 244
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 47/203 (23%)
Query: 54 STESIFKILAATNETI----------------CQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
S ES+ K+L A + +++ + +PL+
Sbjct: 47 SLESVGKLLDAIGARLVFPDEQLPSREVCWVDAKVVAAGNGLPSPEHEDYYAVPLVDEAG 106
Query: 98 SGSGGFFDSGVFPTGN--KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G G+ P G W R + R SM P GD
Sbjct: 107 AG------PGIIPQGQLISW----FLVWRHQETIRHRADLIAVRIAKGSDSMAPTLAPGD 156
Query: 156 ILILNSAIQVNCGDR----LLIKPRTG-----DIVAKVLISRRGRSIDLMSLN-CCYPVD 205
I++++ Q DR +L+ G + A+ L + + S N YP +
Sbjct: 157 IVLVD--RQDKNADRPGRIMLVMDPDGAGKVKRVHAQHLPEEKDYRLTYYSDNAAAYPPE 214
Query: 206 TVEMS---DIEW----IARILWA 221
+ D +W + R++WA
Sbjct: 215 VYSLKRDFDSDWHRAIVGRVIWA 237
>gi|218463028|ref|ZP_03503119.1| LexA repressor [Rhizobium etli Kim 5]
Length = 239
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 137 DIVVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 189
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 190 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 225
>gi|163797189|ref|ZP_02191143.1| hypothetical protein BAL199_09590 [alpha proteobacterium BAL199]
gi|159177484|gb|EDP62038.1| hypothetical protein BAL199_09590 [alpha proteobacterium BAL199]
Length = 205
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ A + SM+P + GD+++++ + + + +VAK L
Sbjct: 107 LRANPANLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIP 166
Query: 190 GRS---IDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ ++S N Y +I+ I RI W
Sbjct: 167 NSDPPCVRIISDNPFYTPYDRTADEIKIIGRIRW 200
>gi|45658491|ref|YP_002577.1| LexA family transcriptional repressor [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45601734|gb|AAS71214.1| transcriptional repressor (LexA family) [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 209
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSI 193
+ K + SM+P + GD++I A D+ L++ + G ++ K L + I
Sbjct: 119 SDGFIVKARGNSMIPRIKDGDLVIAKKASDA--NDKALIVCVQNGKVLIKQL-RKSETGI 175
Query: 194 DLMSLNCCYPVDTVEMSD 211
L+SLN + T+
Sbjct: 176 LLLSLNDEFDPITINPDK 193
>gi|146277319|ref|YP_001167478.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
gi|145555560|gb|ABP70173.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
Length = 263
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDR---------LLIKPRTGDIVAKV 184
+ + SM P GD+L+++ + + G R + G K
Sbjct: 161 SSAVLARAAGDSMAPTIHDGDMLLIDRSRAEAPRGPRGPKDTRPAPIFAILDDGLARVKR 220
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ G ++ L+S N + + ++ + I R++W
Sbjct: 221 IELVPGGTLALLSDNPVFGPEFRQIGSVSIIGRVMW 256
>gi|261350924|ref|ZP_05976341.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
gi|288860262|gb|EFC92560.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
Length = 204
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
++ TSMLP + G +++N V+ GD ++ + K + I L+S N
Sbjct: 111 YQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVSDN 170
>gi|222444537|ref|ZP_03607052.1| hypothetical protein METSMIALI_00149 [Methanobrevibacter smithii
DSM 2375]
gi|222434102|gb|EEE41267.1| hypothetical protein METSMIALI_00149 [Methanobrevibacter smithii
DSM 2375]
Length = 207
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
++ TSMLP + G +++N V+ GD ++ + K + I L+S N
Sbjct: 114 YQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVSDN 173
>gi|254465213|ref|ZP_05078624.1| LexA repressor [Rhodobacterales bacterium Y4I]
gi|206686121|gb|EDZ46603.1| LexA repressor [Rhodobacterales bacterium Y4I]
Length = 233
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 117 TVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
V VP + SP+ YA++ + SM GDI+++ A + GD ++
Sbjct: 131 QVAVPGGMISPNGQHYALE-------VKGDSMIEAGINDGDIVVIREADTADNGDIVVAL 183
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K + G I L + N Y ++ R++
Sbjct: 184 VEGQEATLKYYQRQ-GGMIALEAANPVYETRRYREDQVQVQGRLV 227
>gi|148642292|ref|YP_001272805.1| signal peptidase I [Methanobrevibacter smithii ATCC 35061]
gi|148551309|gb|ABQ86437.1| signal peptidase I [Methanobrevibacter smithii ATCC 35061]
Length = 204
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
++ TSMLP + G +++N V+ GD ++ + K + I L+S N
Sbjct: 111 YQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVSDN 170
>gi|21233742|ref|NP_640040.1| DNA polymerase V subunit UmuD [Proteus vulgaris]
gi|21202926|dbj|BAB93642.1| UV protection and mutation protein [Proteus vulgaris]
Length = 138
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 19/124 (15%)
Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------HNGIYAIQTQDTRHKTQDTSML 148
P+G F + P G P S + + + TSM+
Sbjct: 9 PAGIKLPFFEALIPAG-------FPSPASDYSKNNIDLNELLITHPAGTYFLRVSGTSMI 61
Query: 149 PL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
GDI+I++S++Q N G+ ++I G+ K L + L+ +N + +
Sbjct: 62 DANISDGDIVIVDSSLQANDGN-IVIASIDGEFTVKQLQKTPFPA--LIPMNPDFSPIPI 118
Query: 208 EMSD 211
Sbjct: 119 PSGS 122
>gi|319897552|ref|YP_004135749.1| phage repressor [Haemophilus influenzae F3031]
gi|317433058|emb|CBY81431.1| putative phage repressor [Haemophilus influenzae F3031]
Length = 238
Score = 40.3 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 46/221 (20%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
E+ ++ + A+K G+ P + ++ + + P+ ++ K+ T I + L +
Sbjct: 20 EKEGVSINSFAQKLGVSPPTISRWMKGEAD-----PTRSNLIKLAEQTGINI-EWLAIGA 73
Query: 78 SDGRTTEKKEKEIPLLYFPP----------------------SGSGGFFDSGVFP----- 110
+EI L P +G GGF D P
Sbjct: 74 GPKYWQNPITEEIILRGQPQPIESSNDETFSVIEDCREVRISAGGGGFNDEY-KPYQTTK 132
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
W + +++ ++ SM P + G+ +I++ + + +
Sbjct: 133 VEKAW--LDSRRLKAEDCAMF---------LVSGDSMYPTLKDGEEIIVDRSKKELKDGK 181
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ + G ++ K + I L+S N Y + +
Sbjct: 182 IFVLNNEGAMLVKKVQ-ITYNGITLISQNTEYAPIELNVEQ 221
>gi|260912753|ref|ZP_05919239.1| LexA repressor [Pasteurella dagmatis ATCC 43325]
gi|260633131|gb|EEX51296.1| LexA repressor [Pasteurella dagmatis ATCC 43325]
Length = 212
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 105 DSGVFP-TGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGD 155
DS P G G P + H G Y + D K SM + GD
Sbjct: 81 DSQGLPLVGRV--AAGEPILAEQHIEGTYKVDANMFKPQADFLLKVYGQSMKDIGILDGD 138
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----- 210
+L ++S V G ++++ ++ K L + G I L + N + V+++
Sbjct: 139 LLAVHSTKDVRNG-QVVVARIEDEVTVKRLERK-GSVIYLHAENEEFAPIVVDLNTQPNF 196
Query: 211 DIEWIA 216
+IE IA
Sbjct: 197 EIEGIA 202
>gi|261339962|ref|ZP_05967820.1| UmuD protein [Enterobacter cancerogenus ATCC 35316]
gi|288317875|gb|EFC56813.1| UmuD protein [Enterobacter cancerogenus ATCC 35316]
Length = 139
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
FP+ + V + + + + + K SM GD+L+++S++
Sbjct: 25 GFPSPAA-DYVE--QRIDLNELLVSHPSSTYFVKAAGDSMIEAGIGHGDLLVVDSSLNAE 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I G+ K L R ++ L +N Y V D
Sbjct: 82 HGD-IVIAAVEGEFTVKRLQLRP--TVQLNPMNSAYSPIIVGSED 123
>gi|260221077|emb|CBA29281.1| Protein umuD [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 147
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 107 GVFPTGN---KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
FP+ + + ++ H +Q SM DIL+++ A
Sbjct: 29 AGFPSPAEDLGAERIDLSKVLITHPQATFLQR------VSGHSMKDAGIFDNDILVIDRA 82
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
I+ +++ G+ K L +R + L + N YP
Sbjct: 83 IKPR-HKMIVVAVVDGEFTVKQL-YQRAGRVKLQAANPTYPD 122
>gi|221128063|ref|XP_002155836.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
gi|260222725|emb|CBA32570.1| Protein umuD [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 147
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 107 GVFPTGN---KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
FP+ + + ++ H +Q SM DIL+++ A
Sbjct: 29 AGFPSPAEDLGAERIDLSKVLITHPQATFLQR------VSGHSMKDAGIFDNDILVIDRA 82
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
I+ +++ G+ K L +R + L + N YP
Sbjct: 83 IKPR-HKMIVVAVVDGEFTVKQL-YQRAGRVKLQAANPTYPD 122
>gi|163798137|ref|ZP_02192073.1| hypothetical protein BAL199_00805 [alpha proteobacterium BAL199]
gi|159176580|gb|EDP61158.1| hypothetical protein BAL199_00805 [alpha proteobacterium BAL199]
Length = 205
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ A + SM+P + GD+++++ + + + +VAK L
Sbjct: 107 LRANPANLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIP 166
Query: 190 GRS---IDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ ++S N Y +I+ I RI W
Sbjct: 167 NSDPPCVRIISDNPFYTPYDRTADEIKIIGRIRW 200
>gi|90961224|ref|YP_535140.1| cI-like repressor, phage associated [Lactobacillus salivarius
UCC118]
gi|90820418|gb|ABD99057.1| cI-like repressor, phage associated [Lactobacillus salivarius
UCC118]
Length = 258
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
D + SM P++ G I+ +N +V ++ + V K++
Sbjct: 168 PAHDFALRVNGDSMTPIFSDGQIIYVNKIYDTEEVRNNQFVIAELNGDSYVKKIVFDDNR 227
Query: 191 RSIDLMSLNCCYPVDTVEMSD 211
++ L+SLN Y ++ SD
Sbjct: 228 KNCRLISLNKKYADIEIKKSD 248
>gi|48697282|ref|YP_025049.1| putative repressor protein [Lactobacillus phage phiAT3]
gi|47607173|gb|AAT36509.1| putative repressor protein [Lactobacillus phage phiAT3]
Length = 257
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
+G G F D P +TV +P+ P + Y K SM P Y
Sbjct: 129 GIVAAGYGAFNDDRDEPM----DTVKIPDSAIPAHYDYC-------FKVVGDSMHPTYDD 177
Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G+++ + V G + + G K LI R + L SLN T E
Sbjct: 178 GELVFVQKTQDVTNG-MIAVVDINGMTFIKKLIFEENR-LCLRSLNDDVDEKTGER 231
>gi|225830|prf||1314257A phage 16-3 repressor ORF C
Length = 197
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+K+K +P+L G G +F G+ + V P YA+
Sbjct: 124 EPRKKKLLPVLGEAVGGEDG---EYIF-NGSVLDYVDCPPSLENVPNAYAV-------YI 172
Query: 143 QDTSMLPLYRKGDILILNSAIQVNC 167
SM+P +R G+ + ++
Sbjct: 173 DGESMVPRFRPGETVWVHPTKPPPR 197
>gi|227512434|ref|ZP_03942483.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus buchneri ATCC 11577]
gi|227084407|gb|EEI19719.1| bifunctional S24 family peptidase/transcriptional regulator
[Lactobacillus buchneri ATCC 11577]
Length = 232
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G V R N + D K SM P + + ++ A + G +
Sbjct: 123 AGTGEELVD---ERDQINYRGQLPKFDFAIKINGDSMEPRFHDQQVALVKKAFEAENG-Q 178
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
++I G K ++ L+SLN Y V+
Sbjct: 179 IVIAYVDGRSYIKQF-EHTEQTCRLISLNRKYAPIEVQ 215
>gi|160946037|ref|ZP_02093263.1| hypothetical protein FAEPRAM212_03570 [Faecalibacterium prausnitzii
M21/2]
gi|158443768|gb|EDP20773.1| hypothetical protein FAEPRAM212_03570 [Faecalibacterium prausnitzii
M21/2]
Length = 358
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+ +P+ P S G F G + + VP P + I
Sbjct: 212 GTEEPAKIDCIMMPVSELPVSAGLGAFLE-----GEMFQQIQVPASSVPAGAEFGI---- 262
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
SM P Y G I+ + ++ CGD
Sbjct: 263 ---YVSGDSMEPRYHSGQIVWVKRCEELECGD 291
>gi|204931364|ref|ZP_03222063.1| protein UmuD [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|204319847|gb|EDZ05056.1| protein UmuD [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
Length = 139
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-L 148
IPL +F + FP+ + + + + + + + K SM
Sbjct: 13 IPLPFFS------YLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKATGDSMIE 63
Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
GD+L+++S+ + GD ++I G+ K L R ++ L+ +N Y V
Sbjct: 64 AGISDGDLLVVDSSRNADHGD-IVIAAIEGEFTVKRLQLRP--TVQLIPMNSAYRPIPVG 120
Query: 209 MSD 211
D
Sbjct: 121 SED 123
>gi|17426234|ref|NP_510900.1| similar to phage phi PVL repressor [Staphylococcus phage phiETA]
gi|8918421|dbj|BAA97592.1| unnamed protein product [Staphylococcus phage phiETA]
Length = 238
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM P+++ G+I+ + + G + V KV +
Sbjct: 152 VPPHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVED--DR 209
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y ++
Sbjct: 210 LTLVSLNKKYRDLHFYRNE 228
>gi|323958898|gb|EGB54574.1| peptidase S24 [Escherichia coli H489]
Length = 173
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 95 FPPSGSGGFFDSG--VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PL 150
PP F D FP+ + V H+ + + SM L
Sbjct: 42 LPPQAHPLFADLASCGFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSL 98
Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
Y GD+L+++SA + GD +++ G+ K L+ ++ M S + YP
Sbjct: 99 Y-NGDLLVVDSAEKPRHGD-IVVASMQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 153
>gi|269202476|ref|YP_003281745.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98]
gi|262074766|gb|ACY10739.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98]
Length = 238
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM P+++ G+I+ + + G ++ I G+ K + R
Sbjct: 152 VPPHDLALKVNGNSMEPMFKDGEIIFVEKTHNIKNG-QIGIFIIEGEAYLKKVFVEDNR- 209
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y ++
Sbjct: 210 LTLVSLNKKYRDLHFYRNE 228
>gi|291614758|ref|YP_003524915.1| LexA repressor [Sideroxydans lithotrophicus ES-1]
gi|291584870|gb|ADE12528.1| LexA repressor [Sideroxydans lithotrophicus ES-1]
Length = 198
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 17/162 (10%)
Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
W S S + + E+ ++ P S FF P
Sbjct: 24 WKSIPSYAALCDVFGIASKSWVKAILDRLEKAGFVERTPDGMWIP---SRQFFA---RPL 77
Query: 112 GNKWNTVGVPEIRSPHNGIYAI--------QTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
G+P + +G Y + + T + SM+ +GD+ ++
Sbjct: 78 AEATVQAGMPVAVNETHGEYFVIDEMLVDKPSTTTMITVKGDSMIDAGIHEGDVAVVEKR 137
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
N GD +++ + K L RG+ I L N YPV
Sbjct: 138 HVANIGD-IVVAIVDNEFTLKTLDKERGQYI-LRPANPAYPV 177
>gi|251791093|ref|YP_003005814.1| LexA repressor [Dickeya zeae Ech1591]
gi|247539714|gb|ACT08335.1| SOS-response transcriptional repressor, LexA [Dickeya zeae Ech1591]
Length = 203
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 108 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNV 165
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++ +
Sbjct: 166 VQLLAENKDFAPIVVDLRE 184
>gi|319787765|ref|YP_004147240.1| transcriptional repressor, LexA family [Pseudoxanthomonas
suwonensis 11-1]
gi|317466277|gb|ADV28009.1| transcriptional repressor, LexA family [Pseudoxanthomonas
suwonensis 11-1]
Length = 212
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 15/142 (10%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
LL+ R LL P G + P V
Sbjct: 57 DGLLEQVPGRKRGLRLPGGGADLLPLPVLGRV----AAGLPISP--EGVARLGPVDEGGE 110
Query: 130 IYAIQT------QDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ D + Q SM GD++ ++ + G ++ + G++
Sbjct: 111 ALWLDRRLFSPRPDYLLRVQGDSMIEDGILDGDLVGVHRTPEARDGQTVVARV-DGELTI 169
Query: 183 KVLISRRGRSIDLMSLNCCYPV 204
K L I L+ N +
Sbjct: 170 KRLQR-GADRIRLLPRNPAHAP 190
>gi|317480198|ref|ZP_07939306.1| peptidase S24-like protein [Bacteroides sp. 4_1_36]
gi|316903636|gb|EFV25482.1| peptidase S24-like protein [Bacteroides sp. 4_1_36]
Length = 227
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 139 RHKTQDTSM----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTGDIVAKVL 185
+ + SM Y +GD L+ + D +++ I+ K +
Sbjct: 126 AFEVRGDSMNDGTEESYLEGDRLLCREIAPYLWAESKLHIRKWDFVIVH--EDGILVKRI 183
Query: 186 ISRRGR--SIDLMSLNCCYPVDTVEMSDI 212
I +I + SLN YP ++++++
Sbjct: 184 IDHNVENHTITIHSLNDMYPDRVIDLAEV 212
>gi|255020434|ref|ZP_05292500.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus
ATCC 51756]
gi|254970147|gb|EET27643.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus
ATCC 51756]
Length = 155
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V H + A + SML GD+LI++ A+Q
Sbjct: 37 PAGFPSPAD-DHVE--RSLDLHRHLLAHPDASFFLRISGDSMLAYGIHDGDLLIVDRAVQ 93
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEW 214
G +++ G++ K L G+ L+ N Y + + W
Sbjct: 94 AKEG-MIVVAALDGELTVKRLGKHAGQPA-LLPGNDRYAPIPIREGQELVVW 143
>gi|160890216|ref|ZP_02071219.1| hypothetical protein BACUNI_02656 [Bacteroides uniformis ATCC 8492]
gi|156859948|gb|EDO53379.1| hypothetical protein BACUNI_02656 [Bacteroides uniformis ATCC 8492]
Length = 233
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 139 RHKTQDTSM----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTGDIVAKVL 185
+ + SM Y +GD L+ + D +++ I+ K +
Sbjct: 132 AFEVRGDSMNDGTEESYLEGDRLLCREIAPYLWAESKLHIRKWDFVIVH--EDGILVKRI 189
Query: 186 ISRRGR--SIDLMSLNCCYPVDTVEMSDI 212
I +I + SLN YP ++++++
Sbjct: 190 IDHNVENHTITIHSLNDMYPDRVIDLAEV 218
>gi|114320255|ref|YP_741938.1| SOS-response transcriptional repressor, LexA [Alkalilimnicola
ehrlichii MLHE-1]
gi|122311965|sp|Q0A9N9|LEXA_ALHEH RecName: Full=LexA repressor
gi|114226649|gb|ABI56448.1| SOS-response transcriptional repressor, LexA [Alkalilimnicola
ehrlichii MLHE-1]
Length = 208
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + + SM GD+L+++ + G ++++ ++ K L + G
Sbjct: 113 PRPDYLLRVRGMSMRDAGILDGDLLVVHRTHEARNGQIVVMRLHD-EVTVKRL-EQHGSR 170
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N YP V+++
Sbjct: 171 LRLLAENPDYPTIEVDLTR 189
>gi|226470172|emb|CAX70367.1| SEC11-like 3 [Schistosoma japonicum]
Length = 155
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKV----LISR 188
++ SM P + +GD+L L + GD ++ K +I L
Sbjct: 47 SESPLVVVLSGSMEPAFHRGDVLYLTNYPDEPIRVGDIVVFKIEGREIPIVHRVLKLHES 106
Query: 189 RGRSIDLMSLNCCYP--VDTVEMSDIEWI 215
+I ++ P + +W+
Sbjct: 107 VNGTIKFLTKGDNNPVHDRGLYAPGEDWL 135
>gi|226470170|emb|CAX70366.1| SEC11-like 3 [Schistosoma japonicum]
Length = 177
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKV----LISR 188
++ SM P + +GD+L L + GD ++ K +I L
Sbjct: 47 SESPLVVVLSGSMEPAFHRGDVLYLTNYPDEPIRVGDIVVFKIEGREIPIVHRVLKLHES 106
Query: 189 RGRSIDLMSLNCCYP--VDTVEMSDIEWI 215
+I ++ P + +W+
Sbjct: 107 VNGTIKFLTKGDNNPVHDRGLYAPGEDWL 135
>gi|240142321|ref|YP_002966831.1| component of DNA polymerase V, subunit D [Methylobacterium
extorquens AM1]
gi|240012265|gb|ACS43490.1| component of DNA polymerase V, subunit D [Methylobacterium
extorquens AM1]
Length = 144
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 136 QDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM L GDI +++ ++ + GD +++ G+ K+ R GR +
Sbjct: 49 STFLVRVSGDSMVLARLFDGDIAVVDRSLTPSDGDIVVVDI-DGERSFKIWSRRAGR-VQ 106
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
L N +P ++ + I I+
Sbjct: 107 LSFANPRFPEFEIQADAVVEIWGIV 131
>gi|87200717|ref|YP_497974.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
gi|87136398|gb|ABD27140.1| putative phage repressor [Novosphingobium aromaticivorans DSM
12444]
Length = 269
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-------GDIVAKVLISRRGRSIDLM 196
SM P + GD++++++ DR+L K G K L + R+I +
Sbjct: 187 GDSMEPTLKWGDLILIDTT------DRMLSKQDGIYWINLYGAAGIKRLRAIGPRTILVK 240
Query: 197 SLNCCYPVDTVEMSDIEWIARILWAS 222
S N VE D+ R +WA+
Sbjct: 241 SDNPGVDDQEVEAEDLRIEGRAIWAT 266
>gi|56752879|gb|AAW24651.1| SJCHGC06703 protein [Schistosoma japonicum]
gi|226470168|emb|CAX70365.1| SEC11-like 3 [Schistosoma japonicum]
gi|226470174|emb|CAX70368.1| SEC11-like 3 [Schistosoma japonicum]
Length = 183
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKV----LISR 188
++ SM P + +GD+L L + GD ++ K +I L
Sbjct: 47 SESPLVVVLSGSMEPAFHRGDVLYLTNYPDEPIRVGDIVVFKIEGREIPIVHRVLKLHES 106
Query: 189 RGRSIDLMSLNCCYP--VDTVEMSDIEWI 215
+I ++ P + +W+
Sbjct: 107 VNGTIKFLTKGDNNPVHDRGLYAPGEDWL 135
>gi|218551355|ref|YP_002385147.1| LexA repressor [Escherichia fergusonii ATCC 35469]
gi|226736102|sp|B7LL15|LEXA_ESCF3 RecName: Full=LexA repressor
gi|218358897|emb|CAQ91556.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
fergusonii ATCC 35469]
gi|324112319|gb|EGC06297.1| LexA repressor [Escherichia fergusonii B253]
gi|325499623|gb|EGC97482.1| LexA repressor [Escherichia fergusonii ECD227]
Length = 202
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|86357549|ref|YP_469441.1| LexA repressor [Rhizobium etli CFN 42]
gi|86281651|gb|ABC90714.1| transcriptional regulator repressor LexA protein [Rhizobium etli
CFN 42]
Length = 223
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM+ GD +I+ + + GD ++
Sbjct: 121 DIVVPADMLGSGEHYALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALV 173
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 174 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 209
>gi|271969495|ref|YP_003343691.1| nner membrane protease subunit 1-like protein [Streptosporangium
roseum DSM 43021]
gi|270512670|gb|ACZ90948.1| nner membrane protease subunit 1-like protein [Streptosporangium
roseum DSM 43021]
Length = 101
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
R + + SMLP R GD L + V GD ++ + +
Sbjct: 2 RVRVEGDSMLPALRSGDWLWVRRGAPVRPGDLVVARLPS 40
>gi|167034439|ref|YP_001669670.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
gi|166860927|gb|ABY99334.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
Length = 228
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 136 QDTRHKTQDTSML-----PLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRR 189
+ SM P + +G ++++ I+ G ++ + T + K L+
Sbjct: 131 DAFWLRVIGDSMTLSSGSPSFPEGFLILIAPDIEPRPGQFVVARMTSTNEATFKQLVR-D 189
Query: 190 GRSIDLMSLNCCYPVDTVE 208
+ L LN YP V+
Sbjct: 190 AGELYLKPLNSAYPTRAVD 208
>gi|288958447|ref|YP_003448788.1| repressor [Azospirillum sp. B510]
gi|288910755|dbj|BAI72244.1| repressor [Azospirillum sp. B510]
Length = 240
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 19/127 (14%)
Query: 89 EIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
++PL +G+ D+ F V +P YA++ S
Sbjct: 117 QLPLYGRIAAGTPIEALRDNSAF--------VDIPASMLSTGDHYALE-------VSGDS 161
Query: 147 M-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
M D +I+ G ++ G++ K L + G ++ L N Y
Sbjct: 162 MVEAGILDHDTIIIQRCDSAENGTIVVALVDEGEVTLKRLRRK-GNTVALEPANAAYETR 220
Query: 206 TVEMSDI 212
+
Sbjct: 221 IFGADRV 227
>gi|51245882|ref|YP_065766.1| repressor protein [Desulfotalea psychrophila LSv54]
gi|50876919|emb|CAG36759.1| related to repressor protein [Desulfotalea psychrophila LSv54]
Length = 236
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLIS--RRGR 191
K SM P + GDI+I++ I G R +I G L R G
Sbjct: 141 TAFALKVMCQSMEPEFCPGDIIIVDPEIAPETG-RFVIAQLDGQSSGSEATLKRFERDGG 199
Query: 192 SIDLMSLNCCYPVDTV 207
+ L+SLN Y V
Sbjct: 200 DLYLVSLNDKYGDKNV 215
>gi|260424652|ref|ZP_05732822.2| transcriptional repressor LexA [Dialister invisus DSM 15470]
gi|260402702|gb|EEW96249.1| transcriptional repressor LexA [Dialister invisus DSM 15470]
Length = 149
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 14/130 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
+D KK +P++ +G F D + P T
Sbjct: 14 VINDQAWHRKKMLPMPMVGAVRAGDPVFADEQI--------ETVFPLPAELVGS----DT 61
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM+ ++GD LI+ GD ++ D K I
Sbjct: 62 NCFMLVVRGDSMINAGIQEGDYLIVAEQETARNGDIVVALVGNDDATVKRFFRE-ADHIR 120
Query: 195 LMSLNCCYPV 204
L N Y
Sbjct: 121 LQPENDDYEP 130
>gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11]
gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11]
Length = 218
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 38/204 (18%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-----SKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++ LT LA+KAG+ + +K +K F + ++FK+ AA + L
Sbjct: 13 QKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGD---------TLFKVAAALQCSPQWL 63
Query: 73 LDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
+ D P++ + + G F + + +
Sbjct: 64 QNGDEKDKHWENNVKSCPQRDTAHSYPVINWVQA---GLFATAGD------DYNMYDQDN 114
Query: 125 SPHNGIYAIQTQDTRHKTQDTSML-PL---YRKGDILILNSAIQVNCGDRLLIKPRT-GD 179
H+ YA + + SM P+ + +G +++N +V G ++ + ++ +
Sbjct: 115 WRHSVKYAGER-GFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNE 173
Query: 180 IVAKVLISRRGRSIDLMSLNCCYP 203
K IS G++ L LN YP
Sbjct: 174 ATFKKYISEMGKAF-LKPLNPQYP 196
>gi|148547818|ref|YP_001267920.1| LexA repressor [Pseudomonas putida F1]
gi|148511876|gb|ABQ78736.1| SOS-response transcriptional repressor, LexA [Pseudomonas putida
F1]
Length = 205
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ EIP+L +G+ P G + + E ++ +T D
Sbjct: 72 AEPLRRPEILEIPVLGQVAAGA---------PIGP---DLDIHEQLLLDPSLFR-RTPDY 118
Query: 139 RHKTQDTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
K + SM+ ++ GD++ + G ++ + G++ K L + G + L+
Sbjct: 119 LLKVRGDSMIDDGIF-DGDLVGILQQADARDGQIVVARL-DGEVTIKRLQRQ-GGTYRLL 175
Query: 197 SLNCCYPVDTVEMSD 211
N Y V+
Sbjct: 176 PRNPAYAPIDVQPEQ 190
>gi|227529091|ref|ZP_03959140.1| repressor lexA [Lactobacillus vaginalis ATCC 49540]
gi|227350935|gb|EEJ41226.1| repressor lexA [Lactobacillus vaginalis ATCC 49540]
Length = 210
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 24/151 (15%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
S + L T + + L E ++KEIP++ +G + +
Sbjct: 61 PSKPRALEITKQGLDLL---------GIEPEQKEIPMVGVVTAGQ------PILAVEDTT 105
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
+ +P +G++ + K TSM+ GD +I+ G+ ++
Sbjct: 106 DYFPLPPTIKDASGLFML-------KIHGTSMIKAGILDGDDVIVRKQSTAKDGEIVIAM 158
Query: 175 PRTGDIVAKVLISRR-GRSIDLMSLNCCYPV 204
+ K + L N P
Sbjct: 159 TSDNEATCKRFYKEPENKRYRLQPENDTMPP 189
>gi|54292962|ref|YP_122349.1| hypothetical protein plpl0056 [Legionella pneumophila str. Lens]
gi|53755870|emb|CAH17375.1| hypothetical protein plpl0056 [Legionella pneumophila str. Lens]
Length = 168
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 13/148 (8%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------HNG 129
R K IPL +S P G P +
Sbjct: 12 GRPRGEPTKAVRIPLSQLAKLERLKSHESYQLPVFASKIQAGFPSPADDYIEGYLDLNTK 71
Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
+ + SM+ GD L+++ +I+ + G R++I G++ K L +
Sbjct: 72 FIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDG-RIVIAAVNGELTVKRLSKK 130
Query: 189 RGRSIDLMSLNCC-YPVDTVEMSD-IEW 214
GR + L+ N P+D E S+ + W
Sbjct: 131 GGR-VQLLPANPKFQPIDITEDSEMVIW 157
>gi|307129325|ref|YP_003881341.1| DNA-binding transcriptional repressor of SOS regulon [Dickeya
dadantii 3937]
gi|306526854|gb|ADM96784.1| DNA-binding transcriptional repressor of SOS regulon [Dickeya
dadantii 3937]
Length = 203
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 108 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNV 165
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++ +
Sbjct: 166 VQLLAENKEFAPIVVDLRE 184
>gi|255066737|ref|ZP_05318592.1| putative repressor protein [Neisseria sicca ATCC 29256]
gi|255049065|gb|EET44529.1| putative repressor protein [Neisseria sicca ATCC 29256]
Length = 228
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 30/192 (15%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--- 109
P +E++ KI +I LL TE + + G+ D +F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLTGEGEPFPNTEPPKAT----AYDTLGNPVDIDEFIFVPR 97
Query: 110 -----PTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-------HKTQDTSMLPLYRKGDIL 157
G+ + + Y I+ TR + SM + GD +
Sbjct: 98 YDIHAAAGHGQLVGDEKPMFTMAFRRYWIENYVTRDTKNLSVISVKGDSMEGVLNDGDTI 157
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-------- 209
++N + D L + +++ K L G ++++S N YP +++
Sbjct: 158 LINRSETTPR-DGLYVLRINENLLVKRLQVIPGGIVNVISANEAYPAFEIDLNKMTEDVA 216
Query: 210 --SDIEWIARIL 219
+EW RI+
Sbjct: 217 IIGRVEWFGRII 228
>gi|297518180|ref|ZP_06936566.1| LexA repressor [Escherichia coli OP50]
Length = 192
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|294634335|ref|ZP_06712873.1| repressor LexA [Edwardsiella tarda ATCC 23685]
gi|291092232|gb|EFE24793.1| repressor LexA [Edwardsiella tarda ATCC 23685]
Length = 202
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 105 DSGVFP-TGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGD 155
D P G G P + H G Y + D + SM + GD
Sbjct: 72 DESGLPLIGQV--AAGEPLLAQQHIEGYYQVDPSLFKPNADFLLRVNGMSMRDIGILDGD 129
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+L ++ V G ++++ ++ K L + G + L+ N + V++ +
Sbjct: 130 LLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNVVQLLPENSDFQPIVVDLRE 183
>gi|220927204|ref|YP_002502506.1| LexA repressor [Methylobacterium nodulans ORS 2060]
gi|254809101|sp|B8IN87|LEXA_METNO RecName: Full=LexA repressor
gi|219951811|gb|ACL62203.1| SOS-response transcriptional repressor, LexA [Methylobacterium
nodulans ORS 2060]
Length = 240
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD++++ N GD ++ + K L R G SI
Sbjct: 150 GEHYALEVRGDSMIEAGILDGDLVVIRRQDTANTGDIVVALIDDEEATLKRLRRR-GSSI 208
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + + R++
Sbjct: 209 ALEAANPAYETRVLGPDRVRIQGRLV 234
>gi|297618452|ref|YP_003703611.1| transcription termination factor Rho [Syntrophothermus lipocalidus
DSM 12680]
gi|297146289|gb|ADI03046.1| transcription termination factor Rho [Syntrophothermus lipocalidus
DSM 12680]
Length = 418
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 12 AIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGR--NRWPSTESIFKILAATNE 67
++ R+A HNL PSG GLDP S NK KRF R S + L T
Sbjct: 261 SLTRLARAHNLVIPPSGRTLSGGLDPASLNKPKRFFGAARKIEEGGSLTVLATALVETGS 320
Query: 68 TICQ 71
+ +
Sbjct: 321 RMDE 324
>gi|260598021|ref|YP_003210592.1| protein umuD [Cronobacter turicensis z3032]
gi|260217198|emb|CBA31065.1| Protein umuD [Cronobacter turicensis z3032]
Length = 143
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V H ++ + SM GD+L+++SA++
Sbjct: 29 GFPS-PAQDYVEKRVSLDAHCIVH--PNATYFLRASGESMNGAGIEDGDLLVVDSALKPQ 85
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PVDTVEMSDIEWIARILWA 221
D +++ G+ K L L+ +N + P+ V +D+ + W
Sbjct: 86 END-IVVAALEGEFTVKTLRLHPV--AQLVPMNPDFAPIPLVGDADVVIFGVVTWV 138
>gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107]
gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107]
Length = 201
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
SH + + + E HNL+ LA++AG+ N S +G+ PS +S+ +IL A
Sbjct: 15 SHMDLGRKLKAIREAHNLSQRELAKRAGIT----NSSISMIEQGQVS-PSVQSLERILTA 69
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
++ + G LL
Sbjct: 70 FPLSLAEFFS---PGGILPAPVLITRQLLELQQDNQ 102
>gi|148826910|ref|YP_001291663.1| transcriptional regulator [Haemophilus influenzae PittGG]
gi|148718152|gb|ABQ99279.1| predicted transcriptional regulator [Haemophilus influenzae PittGG]
Length = 213
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CC 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 130 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNSEE 189
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + +M DI I ++ W S
Sbjct: 190 HPDEIADMQDISVIGKVFWYS 210
>gi|31544010|ref|NP_852735.1| putative CI protein [Haemophilus phage Aaphi23]
gi|31408054|emb|CAD90788.1| putative CI protein [Haemophilus phage Aaphi23]
Length = 238
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CC 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 155 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNSEE 214
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + +M DI I ++ W S
Sbjct: 215 HPDEIADMQDISVIGKVFWYS 235
>gi|325292754|ref|YP_004278618.1| LexA repressor [Agrobacterium sp. H13-3]
gi|325060607|gb|ADY64298.1| LexA repressor [Agrobacterium sp. H13-3]
Length = 240
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
V VP YA++ + SM GD +I+ + N GD ++
Sbjct: 138 DVAVPVDMLGTGEHYALE-------VKGDSMIEAGIFDGDTVIIRNGNTANPGDIVVALV 190
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 191 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 226
>gi|302877876|ref|YP_003846440.1| LexA repressor [Gallionella capsiferriformans ES-2]
gi|302580665|gb|ADL54676.1| LexA repressor [Gallionella capsiferriformans ES-2]
Length = 197
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 43/158 (27%), Gaps = 11/158 (6%)
Query: 52 WPSTESIFKILAATNETICQ-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
W S S ++ L L +D IP F
Sbjct: 22 WKSIPSYARLCEIFGIASKSWVKTILTRLGEADFIERTPDGAWIPTRQFFARPLAESTVQ 81
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
P I + ++ T + SM+ GD+ ++ +
Sbjct: 82 AGMPVSVTATQGDFFVI---DEMLIDTPSKTTLITVKGDSMIDAGIHDGDVAVVEKRMTA 138
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
N GD +++ D K L G I L N +P
Sbjct: 139 NIGD-IVVAIVDDDFTLKTLDRENGAFI-LRPANPAFP 174
>gi|221124434|ref|XP_002164597.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
Length = 129
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 107 GVFPTGN---KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
FP+ + + ++ H +Q SM DIL+++ A
Sbjct: 11 AGFPSPAEDLGAERIDLSKVLITHPQATFLQR------VSGHSMKDAGIFDNDILVIDRA 64
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
I+ +++ G+ K L +R + L + N YP
Sbjct: 65 IKPR-HKMIVVAVVDGEFTVKQL-YQRAGRVKLQAANPTYPD 104
>gi|163796784|ref|ZP_02190742.1| hypothetical protein BAL199_13618 [alpha proteobacterium BAL199]
gi|159178038|gb|EDP62585.1| hypothetical protein BAL199_13618 [alpha proteobacterium BAL199]
Length = 222
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ A + SM+P + GD+++++ + + + +VAK L
Sbjct: 124 LRANPANLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIP 183
Query: 190 GRS---IDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ ++S N Y +I+ I RI W
Sbjct: 184 NSDPPCVRIISDNPFYTPYDRTADEIKIIGRIRW 217
>gi|145641568|ref|ZP_01797145.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
gi|145273615|gb|EDK13484.1| predicted transcriptional regulator [Haemophilus influenzae
22.4-21]
Length = 231
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CC 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 148 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNSEE 207
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P +T ++ DI + ++ W S
Sbjct: 208 HPDETADLKDISVLGKVFWYS 228
>gi|116251992|ref|YP_767830.1| LexA repressor [Rhizobium leguminosarum bv. viciae 3841]
gi|122988547|sp|Q1MH39|LEXA_RHIL3 RecName: Full=LexA repressor
gi|115256640|emb|CAK07728.1| putative LexA repressor (SOS regulatory protein) [Rhizobium
leguminosarum bv. viciae 3841]
Length = 239
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 40/203 (19%)
Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
A++ + +PS R+ F+ S G G+ + +T + K +A ++
Sbjct: 62 RALEVIKLPEAYSPSIQPRRG------FSPSVIEGSLGKPQPVATPAPAKSVADNGNSV- 114
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
+P++ +G + N + + VP
Sbjct: 115 ------------------SVPVMGRIAAGV------PISAIQNNTHDIVVPADMLGSGEH 150
Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
YA++ + SM+ GD +I+ + + GD ++ + K +
Sbjct: 151 YALE-------VKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALVDDEEATLKRFRRKG 203
Query: 190 GRSIDLMSLNCCYPVDTVEMSDI 212
SI L + N Y +
Sbjct: 204 A-SIALEAANPAYETRIFGPDRV 225
>gi|23465571|ref|NP_696174.1| hypothetical protein BL1002 [Bifidobacterium longum NCC2705]
gi|189439618|ref|YP_001954699.1| SOS-response transcriptional repressor [Bifidobacterium longum
DJO10A]
gi|227546168|ref|ZP_03976217.1| SOS mutagenesis protein UmuD [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|239621790|ref|ZP_04664821.1| peptidase S24 [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|312133017|ref|YP_004000356.1| lexa2 [Bifidobacterium longum subsp. longum BBMN68]
gi|317481879|ref|ZP_07940906.1| peptidase S24-like protein [Bifidobacterium sp. 12_1_47BFAA]
gi|322688821|ref|YP_004208555.1| hypothetical protein BLIF_0634 [Bifidobacterium longum subsp.
infantis 157F]
gi|23326237|gb|AAN24810.1| hypothetical protein with similarity to ImpA of Salmonella involved
in UV protection and mutation [Bifidobacterium longum
NCC2705]
gi|189428053|gb|ACD98201.1| SOS-response transcriptional repressor [Bifidobacterium longum
DJO10A]
gi|227213149|gb|EEI81021.1| SOS mutagenesis protein UmuD [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|239514981|gb|EEQ54848.1| peptidase S24 [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|291517117|emb|CBK70733.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Bifidobacterium longum subsp. longum
F8]
gi|311774004|gb|ADQ03492.1| LexA2 [Bifidobacterium longum subsp. longum BBMN68]
gi|316916670|gb|EFV38065.1| peptidase S24-like protein [Bifidobacterium sp. 12_1_47BFAA]
gi|320460157|dbj|BAJ70777.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 128
Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+ A + + SM+ GD+LI++ ++ GD ++ +I K L
Sbjct: 6 ESQAMAHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRL 64
Query: 186 ISRRGRSIDLMSLNCCYPV 204
+SR G +I L + N YP
Sbjct: 65 VSRAGITI-LHAENPRYPD 82
>gi|317047819|ref|YP_004115467.1| peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b]
gi|316949436|gb|ADU68911.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b]
Length = 146
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + + + H + + + + SM +GD+L+++SA+
Sbjct: 32 GFPSPAA-DYIERKLDLNEHLVPH--PSATYFVRVEGDSMRDANISEGDLLVVDSALDAK 88
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
GD +++ G+ K L + L+++N Y T
Sbjct: 89 HGD-IVVAAINGEFTVKRLQQFP--RVQLLAMNPRYAPIT 125
>gi|52841463|ref|YP_095262.1| SOS response transcriptional regulator [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|54296998|ref|YP_123367.1| hypothetical protein lpp1039 [Legionella pneumophila str. Paris]
gi|52628574|gb|AAU27315.1| SOS response transcriptional regulator [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53750783|emb|CAH12190.1| hypothetical protein lpp1039 [Legionella pneumophila str. Paris]
Length = 168
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 42 KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
KR G GR R T A ++ QL +L R ++P+ F
Sbjct: 7 KRVGA-GRPRGEPT-------KAVRISLSQLAEL----ERLKSHASYQLPV--FASKIQ- 51
Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILN 160
FP+ + + + + + SM GD L+++
Sbjct: 52 -----AGFPSPAD-DYIE--GYLDLNTKFIKHPSSTFVLQATGESMVEAGIFSGDWLLVD 103
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-IEW 214
+I+ + G R++I G++ K L + GR + L+ N P+D E S+ + W
Sbjct: 104 RSIEPSDG-RIVIAAVNGELTVKRLSKKGGR-VQLLPANPKFQPIDITEDSEMVIW 157
>gi|103486322|ref|YP_615883.1| LexA repressor [Sphingopyxis alaskensis RB2256]
gi|123380023|sp|Q1GUX2|LEXA_SPHAL RecName: Full=LexA repressor
gi|98976399|gb|ABF52550.1| SOS-response transcriptional repressor, LexA [Sphingopyxis
alaskensis RB2256]
Length = 227
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 38/139 (27%), Gaps = 18/139 (12%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
P + E+PL +G F+ + VP YA++
Sbjct: 91 PSALKPIAANDIIEVPLHGRIAAGVPIEAFEDH--------EQLAVPAALLGSGEHYALE 142
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM GD ++ A GD +++ G R G+ I
Sbjct: 143 -------VSGDSMVEAGIFDGDYALIQKADTAREGD-IVVALVDGQDATLKFFRREGKMI 194
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L N Y +
Sbjct: 195 RLDPANSAYEPQRYPAERV 213
>gi|150396569|ref|YP_001327036.1| LexA repressor [Sinorhizobium medicae WSM419]
gi|166224651|sp|A6U971|LEXA_SINMW RecName: Full=LexA repressor
gi|150028084|gb|ABR60201.1| SOS-response transcriptional repressor, LexA [Sinorhizobium medicae
WSM419]
Length = 238
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ VP YA++ + SM GD +I+ +A + GD ++
Sbjct: 136 DISVPIEMIGSGEHYALE-------IKGDSMIEAGILDGDTVIIRNASTASIGDIVVALI 188
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + SI L + N Y +
Sbjct: 189 DDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 224
>gi|92117927|ref|YP_577656.1| putative phage repressor [Nitrobacter hamburgensis X14]
gi|91800821|gb|ABE63196.1| putative phage repressor [Nitrobacter hamburgensis X14]
Length = 220
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 24/145 (16%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
E+ + + G GFF G+ + V P + + A+
Sbjct: 85 PNTGERTVSVRGVAVGGDDGFFY-----FGDVIDRVKRPPGIANAKDVEALN-------V 132
Query: 143 QDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKP---RTGDI---VAKVLISRRGRSID 194
SM P + G+++ + GD ++++ + GD K L+ R G +
Sbjct: 133 AGESMAPRFGPGELIYIQLRPPAP---GDDIVVEIYPEKEGDQSKGFLKRLVRRTGLRLY 189
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
N +M +++ + R+L
Sbjct: 190 CQQFNPP-ADIEFDMGEVKNVWRVL 213
>gi|319942118|ref|ZP_08016436.1| protease Do [Sutterella wadsworthensis 3_1_45B]
gi|319804328|gb|EFW01212.1| protease Do [Sutterella wadsworthensis 3_1_45B]
Length = 474
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 55/180 (30%), Gaps = 35/180 (19%)
Query: 54 STESIFKILAATNETICQLLDLPFSDGR-------TTEKKEKEIPLLYFPPSGSGGF--F 104
+TES T + + L +G T + +P FP G F
Sbjct: 28 ATESSTPTQQQTQGQLPDFVKLVEDNGAGVVNISVTKNARTVAVPNFGFPGMDEQGAEIF 87
Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
FP +PE R +G LIL +A
Sbjct: 88 RRFGFPMPFGGGEQEIPEQRGTGSGF----------IISTDG----------LILTNAHV 127
Query: 165 VNCGDRLLIKPRTG-DIVAKVL--ISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
V D+++++ + KVL + I+ L D+ ++ EW+A I
Sbjct: 128 VEGADKIVVRLTDKREFEGKVLGTDKQTDIAVVKIEAKDLPALKMGDSNQLKVGEWVAAI 187
>gi|309787529|ref|ZP_07682141.1| lexA repressor [Shigella dysenteriae 1617]
gi|308925107|gb|EFP70602.1| lexA repressor [Shigella dysenteriae 1617]
gi|323174430|gb|EFZ60055.1| lexA repressor [Escherichia coli LT-68]
gi|333014426|gb|EGK33777.1| lexA repressor [Shigella flexneri K-227]
Length = 192
Score = 39.9 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 97 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 154
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 155 VELLPENSEFKPIVVDLRQ 173
>gi|257453296|ref|ZP_05618595.1| SOS-response transcriptional repressor, LexA [Fusobacterium sp.
3_1_5R]
gi|317059828|ref|ZP_07924313.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685504|gb|EFS22339.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 215
Score = 39.9 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
IPL +G G F + + +P +R+ + + S
Sbjct: 91 PAAIPLFPRISAGI-GVFGEE-----EVEDYISIPGVRNVEEVF--------SVRVKGDS 136
Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
M P + I++ +QV+ G + G+ K L + + LMS N Y
Sbjct: 137 MEPTIKNSSIIVCRQNMQVHNG-EIGAFLVNGEAFVKRLQIK-PDYVVLMSDNPNYQPIY 194
Query: 207 VEMSD 211
+ +D
Sbjct: 195 ISPND 199
>gi|297584124|ref|YP_003699904.1| LexA family transcriptional repressor [Bacillus selenitireducens
MLS10]
gi|297142581|gb|ADH99338.1| transcriptional repressor, LexA family [Bacillus selenitireducens
MLS10]
Length = 207
Score = 39.9 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 14/114 (12%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
+L+ T IP++ +GS + N + +P
Sbjct: 67 ELIQKDRYGSEITSSPSISIPVVGKVTAGS------PITAIENVEEYLPMPVSFVQDEES 120
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
+ ++ SM GD ++++ N GD ++ + K
Sbjct: 121 FILE-------ISGDSMIEAGIFNGDFVVVHPQSTANNGDIVVAMTDEDEATVK 167
>gi|262040488|ref|ZP_06013730.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259042170|gb|EEW43199.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 154
Score = 39.9 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 38 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLY-NGDLLVVDSAEKP 93
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
GD +++ G+ K L+ ++ M S + YP
Sbjct: 94 RHGD-IVVASVQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 134
>gi|15614919|ref|NP_243222.1| LexA repressor [Bacillus halodurans C-125]
gi|13431641|sp|Q9KAD3|LEXA_BACHD RecName: Full=LexA repressor
gi|10174976|dbj|BAB06075.1| transcriptional repressor of the SOS regulon [Bacillus halodurans
C-125]
Length = 207
Score = 39.9 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
++LDL TTE K IP++ +G + N +PE + ++
Sbjct: 67 EVLDLENLASETTEAKATYIPVVGKVTAGL------PITAVENVEEYFPLPEQLTANDNT 120
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
YA+ + Q SM GD++I+ + GD ++ + K
Sbjct: 121 YAL-------RIQGDSMIEAGIFDGDLVIVRQQQTADNGDIIVAMTEEDEATVKRFFR 171
>gi|15988318|pdb|1JHF|A Chain A, Lexa G85d Mutant
gi|15988319|pdb|1JHF|B Chain B, Lexa G85d Mutant
Length = 202
Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|15804636|ref|NP_290677.1| LexA repressor [Escherichia coli O157:H7 EDL933]
gi|15834280|ref|NP_313053.1| LexA repressor [Escherichia coli O157:H7 str. Sakai]
gi|16131869|ref|NP_418467.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli str. K-12 substr. MG1655]
gi|24115367|ref|NP_709877.1| LexA repressor [Shigella flexneri 2a str. 301]
gi|26250826|ref|NP_756866.1| LexA repressor [Escherichia coli CFT073]
gi|30064633|ref|NP_838804.1| LexA repressor [Shigella flexneri 2a str. 2457T]
gi|74314537|ref|YP_312956.1| LexA repressor [Shigella sonnei Ss046]
gi|82546388|ref|YP_410335.1| LexA repressor [Shigella boydii Sb227]
gi|82779547|ref|YP_405896.1| LexA repressor [Shigella dysenteriae Sd197]
gi|89110764|ref|AP_004544.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. W3110]
gi|91213566|ref|YP_543552.1| LexA repressor [Escherichia coli UTI89]
gi|110644380|ref|YP_672110.1| LexA repressor [Escherichia coli 536]
gi|110807940|ref|YP_691460.1| LexA repressor [Shigella flexneri 5 str. 8401]
gi|117626311|ref|YP_859634.1| LexA repressor [Escherichia coli APEC O1]
gi|157156057|ref|YP_001465544.1| LexA repressor [Escherichia coli E24377A]
gi|157163512|ref|YP_001460830.1| LexA repressor [Escherichia coli HS]
gi|168750824|ref|ZP_02775846.1| LexA repressor [Escherichia coli O157:H7 str. EC4113]
gi|168755195|ref|ZP_02780202.1| LexA repressor [Escherichia coli O157:H7 str. EC4401]
gi|168760890|ref|ZP_02785897.1| LexA repressor [Escherichia coli O157:H7 str. EC4501]
gi|168766285|ref|ZP_02791292.1| LexA repressor [Escherichia coli O157:H7 str. EC4486]
gi|168774382|ref|ZP_02799389.1| LexA repressor [Escherichia coli O157:H7 str. EC4196]
gi|168780437|ref|ZP_02805444.1| LexA repressor [Escherichia coli O157:H7 str. EC4076]
gi|168784640|ref|ZP_02809647.1| LexA repressor [Escherichia coli O157:H7 str. EC869]
gi|168798312|ref|ZP_02823319.1| LexA repressor [Escherichia coli O157:H7 str. EC508]
gi|170021959|ref|YP_001726913.1| LexA repressor [Escherichia coli ATCC 8739]
gi|170083500|ref|YP_001732820.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli str. K-12 substr. DH10B]
gi|170684246|ref|YP_001746433.1| LexA repressor [Escherichia coli SMS-3-5]
gi|170769501|ref|ZP_02903954.1| LexA repressor [Escherichia albertii TW07627]
gi|187732664|ref|YP_001882734.1| LexA repressor [Shigella boydii CDC 3083-94]
gi|188495882|ref|ZP_03003152.1| LexA repressor [Escherichia coli 53638]
gi|191167472|ref|ZP_03029286.1| LexA repressor [Escherichia coli B7A]
gi|191171962|ref|ZP_03033507.1| LexA repressor [Escherichia coli F11]
gi|193063001|ref|ZP_03044093.1| LexA repressor [Escherichia coli E22]
gi|193067911|ref|ZP_03048877.1| LexA repressor [Escherichia coli E110019]
gi|194426760|ref|ZP_03059313.1| LexA repressor [Escherichia coli B171]
gi|194437208|ref|ZP_03069306.1| LexA repressor [Escherichia coli 101-1]
gi|195935810|ref|ZP_03081192.1| LexA repressor [Escherichia coli O157:H7 str. EC4024]
gi|208805980|ref|ZP_03248317.1| LexA repressor [Escherichia coli O157:H7 str. EC4206]
gi|208812141|ref|ZP_03253470.1| LexA repressor [Escherichia coli O157:H7 str. EC4045]
gi|208818676|ref|ZP_03258996.1| LexA repressor [Escherichia coli O157:H7 str. EC4042]
gi|209400985|ref|YP_002273564.1| LexA repressor [Escherichia coli O157:H7 str. EC4115]
gi|209921526|ref|YP_002295610.1| LexA repressor [Escherichia coli SE11]
gi|215489381|ref|YP_002331812.1| LexA repressor [Escherichia coli O127:H6 str. E2348/69]
gi|217325242|ref|ZP_03441326.1| LexA repressor [Escherichia coli O157:H7 str. TW14588]
gi|218556600|ref|YP_002389514.1| LexA repressor [Escherichia coli IAI1]
gi|218561113|ref|YP_002394026.1| LexA repressor [Escherichia coli S88]
gi|218692328|ref|YP_002400540.1| LexA repressor [Escherichia coli ED1a]
gi|218697751|ref|YP_002405418.1| LexA repressor [Escherichia coli 55989]
gi|218702708|ref|YP_002410337.1| LexA repressor [Escherichia coli IAI39]
gi|218707665|ref|YP_002415184.1| LexA repressor [Escherichia coli UMN026]
gi|227886951|ref|ZP_04004756.1| repressor lexA [Escherichia coli 83972]
gi|237703600|ref|ZP_04534081.1| regulator for SOS(lexA) regulon [Escherichia sp. 3_2_53FAA]
gi|238903152|ref|YP_002928948.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli BW2952]
gi|253775329|ref|YP_003038160.1| LexA repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254037039|ref|ZP_04871116.1| LexA repressor [Escherichia sp. 1_1_43]
gi|254163979|ref|YP_003047087.1| LexA repressor [Escherichia coli B str. REL606]
gi|254796045|ref|YP_003080882.1| LexA repressor [Escherichia coli O157:H7 str. TW14359]
gi|256019632|ref|ZP_05433497.1| LexA repressor [Shigella sp. D9]
gi|256024916|ref|ZP_05438781.1| LexA repressor [Escherichia sp. 4_1_40B]
gi|260846837|ref|YP_003224615.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O103:H2 str. 12009]
gi|260858153|ref|YP_003232044.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O26:H11 str. 11368]
gi|260870756|ref|YP_003237158.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O111:H- str. 11128]
gi|261223440|ref|ZP_05937721.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli O157:H7 str. FRIK2000]
gi|261256975|ref|ZP_05949508.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O157:H7 str. FRIK966]
gi|291285460|ref|YP_003502278.1| LexA repressor [Escherichia coli O55:H7 str. CB9615]
gi|293402682|ref|ZP_06646779.1| LexA repressor [Escherichia coli FVEC1412]
gi|293407776|ref|ZP_06651616.1| LexA repressor [Escherichia coli B354]
gi|293417548|ref|ZP_06660170.1| LexA repressor [Escherichia coli B185]
gi|293476348|ref|ZP_06664756.1| LexA repressor [Escherichia coli B088]
gi|298378211|ref|ZP_06988095.1| LexA repressor [Escherichia coli FVEC1302]
gi|300817962|ref|ZP_07098175.1| repressor LexA [Escherichia coli MS 107-1]
gi|300823583|ref|ZP_07103711.1| repressor LexA [Escherichia coli MS 119-7]
gi|300899840|ref|ZP_07118054.1| repressor LexA [Escherichia coli MS 198-1]
gi|300906353|ref|ZP_07124051.1| repressor LexA [Escherichia coli MS 84-1]
gi|300917310|ref|ZP_07133983.1| repressor LexA [Escherichia coli MS 115-1]
gi|300924305|ref|ZP_07140284.1| repressor LexA [Escherichia coli MS 182-1]
gi|300929782|ref|ZP_07145234.1| repressor LexA [Escherichia coli MS 187-1]
gi|300938179|ref|ZP_07152949.1| repressor LexA [Escherichia coli MS 21-1]
gi|300946614|ref|ZP_07160873.1| repressor LexA [Escherichia coli MS 116-1]
gi|300957548|ref|ZP_07169755.1| repressor LexA [Escherichia coli MS 175-1]
gi|300980485|ref|ZP_07175032.1| repressor LexA [Escherichia coli MS 200-1]
gi|300992956|ref|ZP_07180111.1| repressor LexA [Escherichia coli MS 45-1]
gi|301019157|ref|ZP_07183358.1| repressor LexA [Escherichia coli MS 196-1]
gi|301021562|ref|ZP_07185565.1| repressor LexA [Escherichia coli MS 69-1]
gi|301046990|ref|ZP_07194100.1| repressor LexA [Escherichia coli MS 185-1]
gi|301302721|ref|ZP_07208850.1| repressor LexA [Escherichia coli MS 124-1]
gi|301330584|ref|ZP_07223192.1| repressor LexA [Escherichia coli MS 78-1]
gi|301645030|ref|ZP_07244993.1| repressor LexA [Escherichia coli MS 146-1]
gi|306815844|ref|ZP_07449989.1| LexA repressor [Escherichia coli NC101]
gi|307140733|ref|ZP_07500089.1| LexA repressor [Escherichia coli H736]
gi|307312114|ref|ZP_07591751.1| transcriptional repressor, LexA family [Escherichia coli W]
gi|309795850|ref|ZP_07690264.1| repressor LexA [Escherichia coli MS 145-7]
gi|312965297|ref|ZP_07779530.1| lexA repressor [Escherichia coli 2362-75]
gi|312974164|ref|ZP_07788335.1| lexA repressor [Escherichia coli 1827-70]
gi|331644783|ref|ZP_08345900.1| repressor LexA [Escherichia coli H736]
gi|331649903|ref|ZP_08350980.1| repressor LexA [Escherichia coli M605]
gi|331655863|ref|ZP_08356851.1| repressor LexA [Escherichia coli M718]
gi|331660611|ref|ZP_08361543.1| repressor LexA [Escherichia coli TA206]
gi|331665713|ref|ZP_08366607.1| repressor LexA [Escherichia coli TA143]
gi|331670905|ref|ZP_08371739.1| repressor LexA [Escherichia coli TA271]
gi|331675527|ref|ZP_08376275.1| repressor LexA [Escherichia coli TA280]
gi|331680172|ref|ZP_08380831.1| repressor LexA [Escherichia coli H591]
gi|331685790|ref|ZP_08386371.1| repressor LexA [Escherichia coli H299]
gi|332280763|ref|ZP_08393176.1| regulator for SOS(lexA) regulon [Shigella sp. D9]
gi|67467379|sp|P0A7C2|LEXA_ECOLI RecName: Full=LexA repressor
gi|67467382|sp|P0A7C3|LEXA_ECOL6 RecName: Full=LexA repressor
gi|67467383|sp|P0A7C4|LEXA_ECO57 RecName: Full=LexA repressor
gi|67467384|sp|P0A7C5|LEXA_SHIFL RecName: Full=LexA repressor
gi|123084316|sp|Q1R3P3|LEXA_ECOUT RecName: Full=LexA repressor
gi|123342192|sp|Q0SXR0|LEXA_SHIF8 RecName: Full=LexA repressor
gi|123343331|sp|Q0TA20|LEXA_ECOL5 RecName: Full=LexA repressor
gi|123755500|sp|Q31TV1|LEXA_SHIBS RecName: Full=LexA repressor
gi|123759496|sp|Q3YUU1|LEXA_SHISS RecName: Full=LexA repressor
gi|123769502|sp|Q327V0|LEXA_SHIDS RecName: Full=LexA repressor
gi|166224567|sp|A1AIM0|LEXA_ECOK1 RecName: Full=LexA repressor
gi|166990799|sp|A7ZUR5|LEXA_ECO24 RecName: Full=LexA repressor
gi|166990800|sp|A8A7E3|LEXA_ECOHS RecName: Full=LexA repressor
gi|189046536|sp|B1IUK9|LEXA_ECOLC RecName: Full=LexA repressor
gi|226694232|sp|B5Z184|LEXA_ECO5E RecName: Full=LexA repressor
gi|226694233|sp|B6I5Q8|LEXA_ECOSE RecName: Full=LexA repressor
gi|226736097|sp|B7MJ33|LEXA_ECO45 RecName: Full=LexA repressor
gi|226736098|sp|B7NSK5|LEXA_ECO7I RecName: Full=LexA repressor
gi|226736099|sp|B7M7V6|LEXA_ECO8A RecName: Full=LexA repressor
gi|226736100|sp|B7NFY7|LEXA_ECOLU RecName: Full=LexA repressor
gi|226736101|sp|B1LPK8|LEXA_ECOSM RecName: Full=LexA repressor
gi|229621211|sp|B1XC42|LEXA_ECODH RecName: Full=LexA repressor
gi|229621750|sp|B2TX73|LEXA_SHIB3 RecName: Full=LexA repressor
gi|254809096|sp|B7UPK4|LEXA_ECO27 RecName: Full=LexA repressor
gi|254809097|sp|B7LAZ0|LEXA_ECO55 RecName: Full=LexA repressor
gi|254809098|sp|B7N2Q0|LEXA_ECO81 RecName: Full=LexA repressor
gi|259494472|sp|C5A136|LEXA_ECOBW RecName: Full=LexA repressor
gi|12518992|gb|AAG59242.1|AE005637_6 regulator for SOS(lexA) regulon [Escherichia coli O157:H7 str.
EDL933]
gi|26111257|gb|AAN83440.1|AE016770_240 LexA repressor [Escherichia coli CFT073]
gi|146608|gb|AAA24067.1| SOS function regulatory protein (lexA) [Escherichia coli]
gi|396378|gb|AAC43137.1| ORF_o202b [Escherichia coli str. K-12 substr. MG1655]
gi|1790476|gb|AAC77013.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli str. K-12 substr. MG1655]
gi|13364503|dbj|BAB38449.1| regulator for SOS regulon [Escherichia coli O157:H7 str. Sakai]
gi|24054674|gb|AAN45584.1| regulator for SOS(lexA) regulon [Shigella flexneri 2a str. 301]
gi|30042892|gb|AAP18615.1| regulator for SOS(lexA) regulon [Shigella flexneri 2a str. 2457T]
gi|73858014|gb|AAZ90721.1| regulator for SOS(lexA) regulon [Shigella sonnei Ss046]
gi|81243695|gb|ABB64405.1| regulator for SOS regulon [Shigella dysenteriae Sd197]
gi|81247799|gb|ABB68507.1| regulator for SOS(lexA) regulon [Shigella boydii Sb227]
gi|85676795|dbj|BAE78045.1| DNA-binding transcriptional repressor [Escherichia coli str. K12
substr. W3110]
gi|91075140|gb|ABE10021.1| LexA, subunit of LexA transcriptional repressor [Escherichia coli
UTI89]
gi|110345972|gb|ABG72209.1| LexA repressor [Escherichia coli 536]
gi|110617488|gb|ABF06155.1| regulator for SOS(lexA) regulon [Shigella flexneri 5 str. 8401]
gi|115515435|gb|ABJ03510.1| LexA repressor [Escherichia coli APEC O1]
gi|157069192|gb|ABV08447.1| LexA repressor [Escherichia coli HS]
gi|157078087|gb|ABV17795.1| LexA repressor [Escherichia coli E24377A]
gi|169756887|gb|ACA79586.1| transcriptional repressor, LexA family [Escherichia coli ATCC 8739]
gi|169891335|gb|ACB05042.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli str. K-12 substr. DH10B]
gi|170121558|gb|EDS90489.1| LexA repressor [Escherichia albertii TW07627]
gi|170521964|gb|ACB20142.1| LexA repressor [Escherichia coli SMS-3-5]
gi|187429656|gb|ACD08930.1| LexA repressor [Shigella boydii CDC 3083-94]
gi|187769832|gb|EDU33676.1| LexA repressor [Escherichia coli O157:H7 str. EC4196]
gi|188015015|gb|EDU53137.1| LexA repressor [Escherichia coli O157:H7 str. EC4113]
gi|188491081|gb|EDU66184.1| LexA repressor [Escherichia coli 53638]
gi|189001764|gb|EDU70750.1| LexA repressor [Escherichia coli O157:H7 str. EC4076]
gi|189357457|gb|EDU75876.1| LexA repressor [Escherichia coli O157:H7 str. EC4401]
gi|189364225|gb|EDU82644.1| LexA repressor [Escherichia coli O157:H7 str. EC4486]
gi|189368539|gb|EDU86955.1| LexA repressor [Escherichia coli O157:H7 str. EC4501]
gi|189375044|gb|EDU93460.1| LexA repressor [Escherichia coli O157:H7 str. EC869]
gi|189379093|gb|EDU97509.1| LexA repressor [Escherichia coli O157:H7 str. EC508]
gi|190902514|gb|EDV62249.1| LexA repressor [Escherichia coli B7A]
gi|190907727|gb|EDV67321.1| LexA repressor [Escherichia coli F11]
gi|192931260|gb|EDV83862.1| LexA repressor [Escherichia coli E22]
gi|192958886|gb|EDV89323.1| LexA repressor [Escherichia coli E110019]
gi|194415096|gb|EDX31365.1| LexA repressor [Escherichia coli B171]
gi|194423764|gb|EDX39753.1| LexA repressor [Escherichia coli 101-1]
gi|208725781|gb|EDZ75382.1| LexA repressor [Escherichia coli O157:H7 str. EC4206]
gi|208733418|gb|EDZ82105.1| LexA repressor [Escherichia coli O157:H7 str. EC4045]
gi|208738799|gb|EDZ86481.1| LexA repressor [Escherichia coli O157:H7 str. EC4042]
gi|209162385|gb|ACI39818.1| LexA repressor [Escherichia coli O157:H7 str. EC4115]
gi|209751318|gb|ACI73966.1| regulator for SOS regulon [Escherichia coli]
gi|209751320|gb|ACI73967.1| regulator for SOS regulon [Escherichia coli]
gi|209751322|gb|ACI73968.1| regulator for SOS regulon [Escherichia coli]
gi|209751324|gb|ACI73969.1| regulator for SOS regulon [Escherichia coli]
gi|209751326|gb|ACI73970.1| regulator for SOS regulon [Escherichia coli]
gi|209914785|dbj|BAG79859.1| SOS response regulator [Escherichia coli SE11]
gi|215267453|emb|CAS11906.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli O127:H6 str. E2348/69]
gi|217321463|gb|EEC29887.1| LexA repressor [Escherichia coli O157:H7 str. TW14588]
gi|218354483|emb|CAV01328.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli 55989]
gi|218363369|emb|CAR01022.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli IAI1]
gi|218367882|emb|CAR05677.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli S88]
gi|218372694|emb|CAR20570.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli IAI39]
gi|218429892|emb|CAR10719.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli ED1a]
gi|218434762|emb|CAR15695.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli UMN026]
gi|222035757|emb|CAP78502.1| LexA repressor [Escherichia coli LF82]
gi|226840145|gb|EEH72147.1| LexA repressor [Escherichia sp. 1_1_43]
gi|226901512|gb|EEH87771.1| regulator for SOS(lexA) regulon [Escherichia sp. 3_2_53FAA]
gi|227836092|gb|EEJ46558.1| repressor lexA [Escherichia coli 83972]
gi|238860987|gb|ACR62985.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli BW2952]
gi|242379572|emb|CAQ34392.1| LexA transcriptional repressor [Escherichia coli BL21(DE3)]
gi|253326373|gb|ACT30975.1| SOS-response transcriptional repressor, LexA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975880|gb|ACT41551.1| LexA repressor [Escherichia coli B str. REL606]
gi|253980036|gb|ACT45706.1| LexA repressor [Escherichia coli BL21(DE3)]
gi|254595445|gb|ACT74806.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli O157:H7 str. TW14359]
gi|257756802|dbj|BAI28304.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O26:H11 str. 11368]
gi|257761984|dbj|BAI33481.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O103:H2 str. 12009]
gi|257767112|dbj|BAI38607.1| DNA-binding transcriptional repressor LexA of SOS regulon
[Escherichia coli O111:H- str. 11128]
gi|260451128|gb|ACX41550.1| SOS-response transcriptional repressor, LexA [Escherichia coli DH1]
gi|281181109|dbj|BAI57439.1| SOS response regulator [Escherichia coli SE15]
gi|281603472|gb|ADA76456.1| LexA repressor [Shigella flexneri 2002017]
gi|284924137|emb|CBG37236.1| LexA repressor [Escherichia coli 042]
gi|290765333|gb|ADD59294.1| LexA repressor [Escherichia coli O55:H7 str. CB9615]
gi|291320801|gb|EFE60243.1| LexA repressor [Escherichia coli B088]
gi|291429597|gb|EFF02611.1| LexA repressor [Escherichia coli FVEC1412]
gi|291430266|gb|EFF03264.1| LexA repressor [Escherichia coli B185]
gi|291472027|gb|EFF14509.1| LexA repressor [Escherichia coli B354]
gi|294492359|gb|ADE91115.1| LexA repressor [Escherichia coli IHE3034]
gi|298280545|gb|EFI22046.1| LexA repressor [Escherichia coli FVEC1302]
gi|299882381|gb|EFI90592.1| repressor LexA [Escherichia coli MS 196-1]
gi|300301078|gb|EFJ57463.1| repressor LexA [Escherichia coli MS 185-1]
gi|300307787|gb|EFJ62307.1| repressor LexA [Escherichia coli MS 200-1]
gi|300315722|gb|EFJ65506.1| repressor LexA [Escherichia coli MS 175-1]
gi|300356611|gb|EFJ72481.1| repressor LexA [Escherichia coli MS 198-1]
gi|300397996|gb|EFJ81534.1| repressor LexA [Escherichia coli MS 69-1]
gi|300401801|gb|EFJ85339.1| repressor LexA [Escherichia coli MS 84-1]
gi|300406730|gb|EFJ90268.1| repressor LexA [Escherichia coli MS 45-1]
gi|300415454|gb|EFJ98764.1| repressor LexA [Escherichia coli MS 115-1]
gi|300419470|gb|EFK02781.1| repressor LexA [Escherichia coli MS 182-1]
gi|300453713|gb|EFK17333.1| repressor LexA [Escherichia coli MS 116-1]
gi|300456837|gb|EFK20330.1| repressor LexA [Escherichia coli MS 21-1]
gi|300462288|gb|EFK25781.1| repressor LexA [Escherichia coli MS 187-1]
gi|300523915|gb|EFK44984.1| repressor LexA [Escherichia coli MS 119-7]
gi|300529372|gb|EFK50434.1| repressor LexA [Escherichia coli MS 107-1]
gi|300841941|gb|EFK69701.1| repressor LexA [Escherichia coli MS 124-1]
gi|300843462|gb|EFK71222.1| repressor LexA [Escherichia coli MS 78-1]
gi|301076652|gb|EFK91458.1| repressor LexA [Escherichia coli MS 146-1]
gi|305850819|gb|EFM51275.1| LexA repressor [Escherichia coli NC101]
gi|306907921|gb|EFN38422.1| transcriptional repressor, LexA family [Escherichia coli W]
gi|307556188|gb|ADN48963.1| LexA repressor [Escherichia coli ABU 83972]
gi|307629092|gb|ADN73396.1| LexA repressor [Escherichia coli UM146]
gi|308120511|gb|EFO57773.1| repressor LexA [Escherichia coli MS 145-7]
gi|309704455|emb|CBJ03804.1| LexA repressor [Escherichia coli ETEC H10407]
gi|310331698|gb|EFP98954.1| lexA repressor [Escherichia coli 1827-70]
gi|312289971|gb|EFR17858.1| lexA repressor [Escherichia coli 2362-75]
gi|312948622|gb|ADR29449.1| LexA repressor [Escherichia coli O83:H1 str. NRG 857C]
gi|313648760|gb|EFS13200.1| lexA repressor [Shigella flexneri 2a str. 2457T]
gi|315063369|gb|ADT77696.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
coli W]
gi|315138597|dbj|BAJ45756.1| LexA repressor [Escherichia coli DH1]
gi|315254714|gb|EFU34682.1| repressor LexA [Escherichia coli MS 85-1]
gi|315287864|gb|EFU47266.1| repressor LexA [Escherichia coli MS 110-3]
gi|315291524|gb|EFU50884.1| repressor LexA [Escherichia coli MS 153-1]
gi|315297516|gb|EFU56795.1| repressor LexA [Escherichia coli MS 16-3]
gi|315617411|gb|EFU98017.1| lexA repressor [Escherichia coli 3431]
gi|320174471|gb|EFW49611.1| SOS-response repressor and protease LexA [Shigella dysenteriae CDC
74-1112]
gi|320179039|gb|EFW53998.1| SOS-response repressor and protease LexA [Shigella boydii ATCC
9905]
gi|320187474|gb|EFW62162.1| SOS-response repressor and protease LexA [Shigella flexneri CDC
796-83]
gi|320190854|gb|EFW65504.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7
str. EC1212]
gi|320193404|gb|EFW68041.1| SOS-response repressor and protease LexA [Escherichia coli
WV_060327]
gi|320200826|gb|EFW75412.1| SOS-response repressor and protease LexA [Escherichia coli EC4100B]
gi|320638800|gb|EFX08446.1| LexA repressor [Escherichia coli O157:H7 str. G5101]
gi|320644168|gb|EFX13233.1| LexA repressor [Escherichia coli O157:H- str. 493-89]
gi|320649487|gb|EFX18011.1| LexA repressor [Escherichia coli O157:H- str. H 2687]
gi|320654883|gb|EFX22844.1| LexA repressor [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660731|gb|EFX28188.1| LexA repressor [Escherichia coli O55:H7 str. USDA 5905]
gi|320665660|gb|EFX32697.1| LexA repressor [Escherichia coli O157:H7 str. LSU-61]
gi|323155619|gb|EFZ41794.1| lexA repressor [Escherichia coli EPECa14]
gi|323161403|gb|EFZ47310.1| lexA repressor [Escherichia coli E128010]
gi|323164562|gb|EFZ50363.1| lexA repressor [Shigella sonnei 53G]
gi|323177612|gb|EFZ63197.1| lexA repressor [Escherichia coli 1180]
gi|323182147|gb|EFZ67557.1| lexA repressor [Escherichia coli 1357]
gi|323190092|gb|EFZ75370.1| lexA repressor [Escherichia coli RN587/1]
gi|323380568|gb|ADX52836.1| transcriptional repressor, LexA family [Escherichia coli KO11]
gi|323935532|gb|EGB31863.1| LexA repressor [Escherichia coli E1520]
gi|323946176|gb|EGB42210.1| LexA repressor [Escherichia coli H120]
gi|323950413|gb|EGB46294.1| LexA repressor [Escherichia coli H252]
gi|323954495|gb|EGB50279.1| LexA repressor [Escherichia coli H263]
gi|323960450|gb|EGB56083.1| LexA repressor [Escherichia coli H489]
gi|323965705|gb|EGB61157.1| LexA repressor [Escherichia coli M863]
gi|323969823|gb|EGB65104.1| LexA repressor [Escherichia coli TA007]
gi|323975326|gb|EGB70429.1| LexA repressor [Escherichia coli TW10509]
gi|324007800|gb|EGB77019.1| repressor LexA [Escherichia coli MS 57-2]
gi|324014293|gb|EGB83512.1| repressor LexA [Escherichia coli MS 60-1]
gi|324017114|gb|EGB86333.1| repressor LexA [Escherichia coli MS 117-3]
gi|324118615|gb|EGC12507.1| LexA repressor [Escherichia coli E1167]
gi|326340544|gb|EGD64342.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7
str. 1125]
gi|326346515|gb|EGD70249.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7
str. 1044]
gi|327250387|gb|EGE62100.1| lexA repressor [Escherichia coli STEC_7v]
gi|330908364|gb|EGH36883.1| SOS-response repressor and protease LexA [Escherichia coli AA86]
gi|331035758|gb|EGI07996.1| repressor LexA [Escherichia coli H736]
gi|331041283|gb|EGI13436.1| repressor LexA [Escherichia coli M605]
gi|331046217|gb|EGI18307.1| repressor LexA [Escherichia coli M718]
gi|331051653|gb|EGI23692.1| repressor LexA [Escherichia coli TA206]
gi|331056764|gb|EGI28758.1| repressor LexA [Escherichia coli TA143]
gi|331061819|gb|EGI33744.1| repressor LexA [Escherichia coli TA271]
gi|331067301|gb|EGI38708.1| repressor LexA [Escherichia coli TA280]
gi|331071635|gb|EGI42971.1| repressor LexA [Escherichia coli H591]
gi|331076987|gb|EGI48204.1| repressor LexA [Escherichia coli H299]
gi|332083535|gb|EGI88755.1| lexA repressor [Shigella boydii 5216-82]
gi|332087758|gb|EGI92884.1| lexA repressor [Shigella boydii 3594-74]
gi|332103115|gb|EGJ06461.1| regulator for SOS(lexA) regulon [Shigella sp. D9]
gi|332346042|gb|AEE59376.1| repressor protein LexA [Escherichia coli UMNK88]
gi|332751987|gb|EGJ82380.1| lexA repressor [Shigella flexneri 4343-70]
gi|332752157|gb|EGJ82549.1| lexA repressor [Shigella flexneri K-671]
gi|332753325|gb|EGJ83706.1| lexA repressor [Shigella flexneri 2747-71]
gi|332764750|gb|EGJ94979.1| lexA repressor [Shigella flexneri 2930-71]
gi|332998110|gb|EGK17714.1| lexA repressor [Shigella flexneri VA-6]
gi|332999040|gb|EGK18629.1| lexA repressor [Shigella flexneri K-272]
gi|332999140|gb|EGK18727.1| lexA repressor [Shigella flexneri K-218]
gi|333014286|gb|EGK33642.1| lexA repressor [Shigella flexneri K-304]
Length = 202
Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|260771651|ref|ZP_05880571.1| SOS-response repressor and protease LexA [Vibrio metschnikovii CIP
69.14]
gi|260613428|gb|EEX38627.1| SOS-response repressor and protease LexA [Vibrio metschnikovii CIP
69.14]
Length = 208
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + Q SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 113 PQADFLLRVQGESMKDIGIMDGDLLAVHKTQDVRNG-QVVVARVEEDVTVKRLERKGAK- 170
Query: 193 IDLMSLNCCYPVDTVEMS 210
+ L + N + V+++
Sbjct: 171 VWLHAENDAFAPIEVDLT 188
>gi|91977309|ref|YP_569968.1| LexA repressor [Rhodopseudomonas palustris BisB5]
gi|123735363|sp|Q136C2|LEXA_RHOPS RecName: Full=LexA repressor
gi|91683765|gb|ABE40067.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
palustris BisB5]
Length = 235
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM GD+ ++ GD ++
Sbjct: 134 TISVPPDMLGSGEHYALE-------VRGDSMVEAGILDGDMALIQRNESAETGDIVVALI 186
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 187 DEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRV 222
>gi|303248682|ref|ZP_07334936.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
gi|302489938|gb|EFL49864.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
Length = 226
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM P R GD ++++ + ++ K + R G + L+S N
Sbjct: 139 MDVVGNSMEPEIRHGDTVLIDQGQTAIVAHGVYAMGVEDTVLVKRVEKRPGSLV-LLSDN 197
Query: 200 CCYPVDTVEMSDIEW---IARILWA 221
Y + +I+ I R+LW
Sbjct: 198 RDYAPIVLSGDEIDALRVIGRVLWV 222
>gi|78186881|ref|YP_374924.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273]
gi|78166783|gb|ABB23881.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273]
Length = 245
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 106 SGVFPTGNKWN---TVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
P +V P IYA+ SM+ + GD L++
Sbjct: 127 PAGMPAAAADEVECSVDFPRSWTKGKKNIYAL-------TVSGDSMMDIGIMPGDTLLVE 179
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G +++I ++ K L G ++ L N Y V
Sbjct: 180 ARETARDG-QVVIASLNSEVTVKTLCISAGGAVALAPENRKYHPIPVPPDS 229
>gi|307546683|ref|YP_003899162.1| hypothetical protein HELO_4093 [Halomonas elongata DSM 2581]
gi|307218707|emb|CBV43977.1| hypothetical protein HELO_4093 [Halomonas elongata DSM 2581]
Length = 147
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 106 SGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP--LYRKGDILILN 160
FP+ + + + H + + + SM+ +Y GD+LI++
Sbjct: 26 RAGFPSPADDYLETELDLVDHLVQH------PSATFYVRAKGESMMRHGIY-DGDLLIVD 78
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+++ GD ++I G++ K L GR L+S N + +E +
Sbjct: 79 RSLEPRNGD-VIIIAVDGELTCKQLD-LIGRRPYLVSGNSAFTPIPLEGRE 127
>gi|251793277|ref|YP_003008005.1| LexA repressor [Aggregatibacter aphrophilus NJ8700]
gi|247534672|gb|ACS97918.1| LexA repressor [Aggregatibacter aphrophilus NJ8700]
Length = 208
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D K SM + GD+L ++S V G ++++ ++ K L + G
Sbjct: 112 PRADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNG-QVVVARIEDEVTVKRLERK-GSI 169
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I L + N + V+++
Sbjct: 170 IYLHAENEEFAPIVVDLTQ 188
>gi|254474906|ref|ZP_05088292.1| LexA repressor [Ruegeria sp. R11]
gi|214029149|gb|EEB69984.1| LexA repressor [Ruegeria sp. R11]
Length = 226
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
+ + Q Q + + SM GDI+++ + GD ++ + K +
Sbjct: 130 SMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETSVADDGDVVVALVEGQEATLKRIYR 189
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ G S+ L + N Y ++ R++
Sbjct: 190 K-GTSVALEAANPAYETRRYRQDQVKVQGRLV 220
>gi|146743438|gb|ABQ43165.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Ca]
Length = 350
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKGLEKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|146743442|gb|ABQ43168.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Cb]
Length = 349
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKGLEKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|303246421|ref|ZP_07332700.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
gi|302492131|gb|EFL52006.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
Length = 188
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM P+ GD ++++ + + + ++ K L+ G+ + L S N
Sbjct: 97 MDVAGDSMEPMLFDGDTVLIDESQREIIAGAIFAVGIEQEVFVKSLLRVPGKLV-LQSRN 155
Query: 200 CCYPVDTVEM-----SDIEWIARILWA 221
Y V+M + I R++W+
Sbjct: 156 ERYAPIEVDMNGDLAGTVRIIGRVVWS 182
>gi|194432334|ref|ZP_03064622.1| LexA repressor [Shigella dysenteriae 1012]
gi|194419537|gb|EDX35618.1| LexA repressor [Shigella dysenteriae 1012]
gi|332084337|gb|EGI89540.1| lexA repressor [Shigella dysenteriae 155-74]
Length = 202
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|1827863|pdb|1UMU|A Chain A, Structure Determination Of Umud' By Mad Phasing Of The
Selenomethionyl Protein
gi|1827864|pdb|1UMU|B Chain B, Structure Determination Of Umud' By Mad Phasing Of The
Selenomethionyl Protein
Length = 116
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 108 VFPTGNK---WNTVGVPEIRSPH-NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
FP+ + + ++ H + Y ++ S GD+LI++SAI
Sbjct: 1 GFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSXIDGGIS------DGDLLIVDSAI 54
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ GD ++I G+ K L R ++ L+ N Y T+ D
Sbjct: 55 TASHGD-IVIAAVDGEFTVKKLQLRP--TVQLIPXNSAYSPITISSED 99
>gi|9630498|ref|NP_046933.1| CB [Enterobacteria phage N15]
gi|1184742|gb|AAB81655.1| repressor protein [Enterobacteria phage N15]
gi|3192717|gb|AAC19070.1| gp38 [Enterobacteria phage N15]
gi|89158281|gb|ABD62892.1| cB [Cloning vector pJAZZ-KA]
gi|124491097|gb|ABN12903.1| CB [Cloning vector pN15E4]
gi|124491104|gb|ABN12909.1| CB [Cloning vector pN15E6]
gi|205318621|gb|ACI02337.1| CB [Linear cloning vector pJAZZ-OK]
gi|269974867|gb|ACZ55231.1| phage repressor cB [Cloning vector pJAZZ-OCmin]
Length = 202
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
TE +P++ +G + P NT S N +YA+ + +
Sbjct: 70 TESDPDRVPVIGTTETGPDRDWQP-GEPA----NTERFLPFVSQRNTVYALTVGNQIQRN 124
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
Y+ GD+++++S++ + G+ +L+ G+I + L + L S N
Sbjct: 125 --------YQPGDVILVDSSLTLVPGEDVLVCDNNGEITIQRLARYDEQHYYLDSANSQ- 175
Query: 203 PVDTV-EMSDIEWIARIL 219
+ + SD++++ +++
Sbjct: 176 --RVIHDKSDLQFVHQVV 191
>gi|242240801|ref|YP_002988982.1| LexA repressor [Dickeya dadantii Ech703]
gi|242132858|gb|ACS87160.1| SOS-response transcriptional repressor, LexA [Dickeya dadantii
Ech703]
Length = 203
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 108 PNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNI 165
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++ +
Sbjct: 166 VQLLAENKDFEPIVVDLRE 184
>gi|239908033|ref|YP_002954774.1| hypothetical protein DMR_33970 [Desulfovibrio magneticus RS-1]
gi|239797899|dbj|BAH76888.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 235
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
++ SM P R GD+++++ + ++ K + R G+ +
Sbjct: 142 PSRMVLMDVVGNSMEPEIRHGDMVLIDQGQTAVVAHGVYAVGLEDTVLVKRVEKRPGQLV 201
Query: 194 DLMSLNCCYPVDTVEMSDIE---WIARILWA 221
L+S N Y + +++ +I R+LW
Sbjct: 202 -LLSDNRDYAPIVLAGDELDALRFIGRVLWV 231
>gi|116667750|pdb|2HNF|A Chain A, Structure Of A Hyper-Cleavable Monomeric Fragment Of Phage
Lambda Repressor Containing The Cleavage Site Region
Length = 133
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 136 QDTRHKTQDTSML-PL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SM P + G +++++ V GD + + + LI
Sbjct: 43 SAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFAKLIRDS 102
Query: 190 GRSIDLMSLNCCYP 203
G+ L LN YP
Sbjct: 103 GQVF-LQPLNPQYP 115
>gi|308069329|ref|YP_003870934.1| LexA repressor [Paenibacillus polymyxa E681]
gi|310642375|ref|YP_003947133.1| sos-response repressor and protease lexa [Paenibacillus polymyxa
SC2]
gi|305858608|gb|ADM70396.1| LexA repressor [Paenibacillus polymyxa E681]
gi|309247325|gb|ADO56892.1| SOS-response repressor and protease LexA [Paenibacillus polymyxa
SC2]
Length = 208
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 22/147 (14%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFD------------SGVFPTGNKW---NTVGVPEIRS 125
R K + I LL S + + + P + +P+
Sbjct: 57 RRDPTKPRAIELLGQDESDNSNLINYSISRVPVVGKVTAGLPITATENIEDYFPLPQHFV 116
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
+ I+ + + GD +I+ + GD ++ + K
Sbjct: 117 GEDKIFMLSVVGESMIEAGIA------NGDYVIVRQQQTADNGDIVVAMTDEDEATVKTF 170
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ I L N + + I
Sbjct: 171 -YKEKDHIRLQPENPAFEPLRLTHVSI 196
>gi|147724743|gb|ABQ45979.1| repressor [Linear cloning vector pJAZZ-OC]
Length = 198
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
TE +P++ +G + P NT S N +YA+ + +
Sbjct: 66 TESDPDRVPVIGTTETGPDRDWQP-GEPA----NTERFLPFVSQRNTVYALTVGNQIQRN 120
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
Y+ GD+++++S++ + G+ +L+ G+I + L + L S N
Sbjct: 121 --------YQPGDVILVDSSLTLVPGEDVLVCDNNGEITIQRLARYDEQHYYLDSANSQ- 171
Query: 203 PVDTV-EMSDIEWIARIL 219
+ + SD++++ +++
Sbjct: 172 --RVIHDKSDLQFVHQVV 187
>gi|92117275|ref|YP_577004.1| LexA repressor [Nitrobacter hamburgensis X14]
gi|123265283|sp|Q1QMK3|LEXA_NITHX RecName: Full=LexA repressor
gi|91800169|gb|ABE62544.1| SOS-response transcriptional repressor, LexA [Nitrobacter
hamburgensis X14]
Length = 233
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 22/136 (16%)
Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD--------------- 137
L GG D P V V + I A+QT+
Sbjct: 91 LGKVRPSGGGVVDDAERPV-----AVPVMGRIAAGTPIEALQTRSHTISVPPDMLGSGEH 145
Query: 138 TRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ + SM GD+ ++ GD ++ + K R SI L
Sbjct: 146 YALEVRGDSMVEAGILDGDMALIQRNETAETGDIVVALIDDEEATLKRFRRRGA-SIALE 204
Query: 197 SLNCCYPVDTVEMSDI 212
N Y V + + +
Sbjct: 205 PANTAYEVRILPPNRV 220
>gi|7715980|gb|AAF68232.1|AF203972_5 unknown [Shuttle vector pBA]
Length = 238
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 29/140 (20%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
IPL+ G+ D + + + + H A + + S
Sbjct: 24 IPLVN--QFAYAGYLD--GYTDASYMEQLPKIPFIVDKEGHGNYIAFE-------VKGDS 72
Query: 147 M----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTGDIVAKVL-ISRRGRS 192
M Y +GD L + D +++ G IV +++ +
Sbjct: 73 MNNGTEESYLEGDRLYCREIAPYLWATSKLHLRKWDFVIVHT-DGIIVKRIIDHDVENHT 131
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I + SLN YP +++ D+
Sbjct: 132 ITIHSLNDMYPDRVIDLCDV 151
>gi|257487771|ref|ZP_05641812.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289627967|ref|ZP_06460921.1| LexA repressor [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289649729|ref|ZP_06481072.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 2250]
Length = 205
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ R + + E+P+L +G+ P
Sbjct: 44 SVARKHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRVAAGA---------P 94
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 95 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 150
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L + L+ N Y V
Sbjct: 151 IVVARL-DGEVTIKRLHR-SADQVRLLPRNPAYEPIIVTPDQ 190
>gi|159528148|ref|YP_001542711.1| SOS response transcriptional regulator [Fluoribacter dumoffii]
gi|159157993|dbj|BAF92682.1| SOS response transcriptional regulator [Fluoribacter dumoffii]
Length = 168
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------HNG 129
R K +P+ + P G P +
Sbjct: 12 GRPRGEPTKAVRLPVATLAELEQLKNRAANQLPIFASKVQAGFPSPADDYIEGYLDLNTK 71
Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
+ + SM GD L+++ +I+ + G R++I G++ K L +
Sbjct: 72 FIKHPSSTFVLQATGDSMVEAGIFSGDWLLVDRSIEPSDG-RIVIAAVNGELTVKRLSKK 130
Query: 189 RGRSIDLMSLNCCYPVDTV--EMSDIEW 214
G + L+ N + + E + W
Sbjct: 131 -GSQVQLLPANPKFKPIDITQECEMVIW 157
>gi|167758980|ref|ZP_02431107.1| hypothetical protein CLOSCI_01326 [Clostridium scindens ATCC 35704]
gi|167663387|gb|EDS07517.1| hypothetical protein CLOSCI_01326 [Clostridium scindens ATCC 35704]
Length = 197
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKV 184
A+ R T SM P+ GD++++N A GD ++ KP+ +
Sbjct: 42 AFVAVWYFGQRVSTVGDSMNPVLHNGDVVLVNRIVYNATTPKRGDIIVFKPKGNENAHYY 101
Query: 185 LIS---RRGRSIDL 195
+ G ++++
Sbjct: 102 IKRIVGLPGETVEI 115
>gi|312233589|gb|ADQ53882.1| DNA-binding protein RDGA [Vibrio harveyi]
Length = 132
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 90 IPLLY--FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
+PLL G G D +TV VP + H I Q + SM
Sbjct: 13 VPLLENVLAAGGDGATNDDF-----TSISTVPVPSYVTKHRNI----NQIVSIQVMGDSM 63
Query: 148 LPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
P+ G +++++ S + + G ++ + + G + K L+ G + + S N Y +T
Sbjct: 64 EPMLYDGGLVVIDKSEVSIRDG-KVYVFRQDGMLRVKRLVLISGGVL-IKSQNPAYNSET 121
Query: 207 VE 208
++
Sbjct: 122 LQ 123
>gi|226325142|ref|ZP_03800660.1| hypothetical protein COPCOM_02934 [Coprococcus comes ATCC 27758]
gi|225206490|gb|EEG88844.1| hypothetical protein COPCOM_02934 [Coprococcus comes ATCC 27758]
Length = 197
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 144 DTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGDIV---AKVLISRRGRSIDLM 196
SM P+ R GD++ I+ A GD ++ KP+ + + K +I G S+++
Sbjct: 56 GESMNPVIRNGDVVLVNRIVYDASTPKRGDIIVFKPKGNENLHSYIKRIIGLPGESVEIR 115
>gi|311281411|ref|YP_003943642.1| transcriptional repressor, LexA family [Enterobacter cloacae SCF1]
gi|308750606|gb|ADO50358.1| transcriptional repressor, LexA family [Enterobacter cloacae SCF1]
Length = 202
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GSV 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFSPIVVDLRQ 183
>gi|257467041|ref|ZP_05631352.1| SOS-response transcriptional repressor, LexA [Fusobacterium
gonidiaformans ATCC 25563]
gi|315918178|ref|ZP_07914418.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313692053|gb|EFS28888.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 215
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
IPL +G G F + + +P +R+ + + S
Sbjct: 91 PSAIPLFPRISAGI-GVFGEE-----EVEDYISIPGVRNVEEVF--------SVRVKGDS 136
Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
M P + I++ +QV+ G + G+ K L + + LMS N Y
Sbjct: 137 MEPTIKNSSIIVCRQNMQVHNG-EIGAFLVNGEAFVKRLQIK-PDYVVLMSDNPNYQPIY 194
Query: 207 VEMSD 211
+ +D
Sbjct: 195 ISPND 199
>gi|297566157|ref|YP_003685129.1| putative phage repressor [Meiothermus silvanus DSM 9946]
gi|296850606|gb|ADH63621.1| putative phage repressor [Meiothermus silvanus DSM 9946]
Length = 235
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 39/184 (21%)
Query: 53 PSTESI---FKILAATN---------ETICQLLDLPFSDGRTTEKKEKEIPLL-----YF 95
PST ++ +L A + LLDL ++ ++
Sbjct: 63 PSTLTVRQFSLLLKALGWRASDWQEQTGLEPLLDLESPTSLQPGERVSKVRFFIELVRGL 122
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G D+ P + ++ + +Y ++ SM P GD
Sbjct: 123 ASAGRP--VDADGMPV--------LADVWRRGSLLYQVE---------GDSMAPTLNDGD 163
Query: 156 ILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
+ ++ + + + G +++ K + + L+S N Y S++
Sbjct: 164 RVYVDPSDLDLREGRVYVLEIPGDGHTIKRVRRLDDGELWLVSDNPKY--RPWRPSEMRV 221
Query: 215 IARI 218
I R+
Sbjct: 222 IGRV 225
>gi|114324653|gb|ABI63635.1| unknown [Streptococcus salivarius]
Length = 264
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 16/136 (11%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
DL G E+ K + + + + G F+ P + + P I
Sbjct: 132 DLKKQTGINEERPTKRVSI--YARVDAQG-FELSEVPV----DCLDYPVP---------I 175
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D K SM P++ +++ + + GD +++ + V KV + I
Sbjct: 176 PVHDIALKVVGNSMEPIFLDDEVIFVMKNSILRTGDIAIVQLDSRYCVMKVCKNSENGDI 235
Query: 194 DLMSLNCCYPVDTVEM 209
L SLN ++
Sbjct: 236 ILNSLNTDETAISLTR 251
>gi|325142614|gb|EGC65006.1| hypothetical protein NMB9615945_0804 [Neisseria meningitidis
961-5945]
Length = 256
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 56 DADGKALSMRLTPRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 106
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
DTSM P+ KGD++++ ++ D +LI+ +V L
Sbjct: 107 ----AMPDTSMSPVIEKGDLVVVEPRMRPADEDIVLIELSDKRLVVAHL 151
>gi|301300079|ref|ZP_07206297.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852311|gb|EFK79977.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 242
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVLISRRGR 191
D + SM+PL+ G I+ +N +N ++++I GD K ++ R
Sbjct: 152 PEHDFALRVNGDSMIPLFSDGQIIYVNRVDDLNMVRNEQIVIAELNGDAFVKKIVFDNNR 211
Query: 192 S-IDLMSLNCCYPVDTVEMSD 211
L+SLN Y +V +D
Sbjct: 212 KDCQLISLNKEYKPISVTEND 232
>gi|296273246|ref|YP_003655877.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
gi|296097420|gb|ADG93370.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
Length = 218
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)
Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
S GG +DS + + VP G SM P +I+
Sbjct: 95 SAGGGAYDSD-----ENYENIEVPPYFVDTLGGEQNLKNIEAINVIGDSMEPTLNSNNII 149
Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
++ +I+ D + + K + R +D++S N YP ++ ++E + +
Sbjct: 150 FVDKSIKSGFRDGIYAFTTNHGLFVKRIQKRVDGKLDIISDNKDYPAQIMKSDELEILGK 209
Query: 218 IL 219
++
Sbjct: 210 VV 211
>gi|270159934|ref|ZP_06188590.1| UmuD [Legionella longbeachae D-4968]
gi|289165318|ref|YP_003455456.1| UmuD protein [Legionella longbeachae NSW150]
gi|269988273|gb|EEZ94528.1| UmuD [Legionella longbeachae D-4968]
gi|288858491|emb|CBJ12372.1| putative UmuD protein [Legionella longbeachae NSW150]
Length = 168
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------HNG 129
R+ K +P+ P G P ++
Sbjct: 12 GRPRSEPTKAVRLPISQLAELERLKSRPDYRLPVFASKIQAGFPSPADDYIEGYLDLNSK 71
Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
+ + SM+ GD L+++ +I+ + G R++I G++ K L+++
Sbjct: 72 FIKHPSSTFVLQATGDSMVDAGIFSGDWLLVDRSIEPSDG-RIVIAAVNGELTVKRLLNK 130
Query: 189 RGRSIDLMSLNCCY-PVDTVEMSD-IEW 214
G+ + L+ N + P+D E S+ + W
Sbjct: 131 GGK-VQLLPANPKFKPIDITEGSEMVIW 157
>gi|262163862|ref|ZP_06031602.1| transcriptional regulator [Vibrio mimicus VM223]
gi|262027842|gb|EEY46507.1| transcriptional regulator [Vibrio mimicus VM223]
Length = 220
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM P + G ++I+ + GD + + ++ K L + + I
Sbjct: 125 PSDVFMMRVSGDSMYPTLQDGALIIVK-NMSDFYGDGVYVFRINEQVMVKRLQFQPTKII 183
Query: 194 DLMSLN-CCYPVDTVEMSDIEWI-----ARILW 220
S N Y V ++E I R++W
Sbjct: 184 -FKSDNIHLYEPWEVLHKELEGIDFKILGRVIW 215
>gi|325675185|ref|ZP_08154870.1| LexA repressor [Rhodococcus equi ATCC 33707]
gi|325553891|gb|EGD23568.1| LexA repressor [Rhodococcus equi ATCC 33707]
Length = 220
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 31/179 (17%)
Query: 40 KSKRFGIEGR-NRWPSTESIFKILAAT--------NETICQLLD----LPFSDGRTTEKK 86
S R + R ST ++ K L A ++ + LD L S + +
Sbjct: 40 PSTREIADAVGLR--STSTVSKHLKALEDKGFLRRGGSMTRQLDVRPFLTGSAPGRSTEN 97
Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
+P++ +G+ + + + +P ++A+ + + S
Sbjct: 98 TVTVPVVGDIAAGA------PILAEEHADEMLSLPRELVGSGTVFAL-------RVRGES 144
Query: 147 ML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
M+ GD +++ + + G ++ G+ KVL R G + L N Y V
Sbjct: 145 MVDAAICDGDTVVVRRQEEAHSG-EIVAAMIDGEATVKVLRRRNGHVL-LEPRNPAYEV 201
>gi|152996004|ref|YP_001340839.1| putative prophage repressor [Marinomonas sp. MWYL1]
gi|150836928|gb|ABR70904.1| putative prophage repressor [Marinomonas sp. MWYL1]
Length = 148
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + V + + A + Q SM+ + GD+L+++ ++
Sbjct: 30 SAGFPS-PAQDFVE--KSLDLNEFCVAHPNATFYVRAQGDSMIDVGIYSGDVLVVDRSLT 86
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
GD ++ G++ K L + + L N Y
Sbjct: 87 ARHGDIVIACIH-GEMTVKTLELKPN--VLLRPKNKAY 121
>gi|47768|emb|CAA45123.1| LexA protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|552020|gb|AAA27157.1| lexA [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 202
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ + V G +++ ++ K L + +
Sbjct: 107 PSADFLLRVSGMSMKDIGIMDGDLLAVHKSEDVRNGQ-VVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENSEFTPIVVDLRE 183
>gi|46201430|ref|ZP_00208098.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Magnetospirillum magnetotacticum MS-1]
Length = 235
Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 15/147 (10%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+PL +G+ + + ++ +P YA+
Sbjct: 97 QQLVGAPVAVPSDSVSLPLYGKIAAGT------AIEALSDHSRSIDIPASMLGSGNHYAL 150
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SM GD +++ S G ++ ++ K L + G S
Sbjct: 151 -------TVEGDSMIEAGINDGDTVVIRSCDSAETGTIVVALVDDTEVTLKRLRRK-GTS 202
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ L N Y + ++ R++
Sbjct: 203 VALEPANKAYETRVLPPDRVKVQGRLV 229
>gi|15837298|ref|NP_297986.1| phage-related repressor protein [Xylella fastidiosa 9a5c]
gi|9105580|gb|AAF83506.1|AE003913_2 phage-related repressor protein [Xylella fastidiosa 9a5c]
Length = 221
Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 64/221 (28%), Gaps = 30/221 (13%)
Query: 6 HK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKI 61
H KI I E ++ + LA+ AG+ ++ + G +R ST ++ KI
Sbjct: 2 HDMKIGSRIRAERENQGISRTELAKFAGIATSTL-------SDLELGHSR--STTALHKI 52
Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
+ L T L + G G+ P
Sbjct: 53 AERLGVSAQWLETGRGEKSTDTFPAPISNNSLGYVRVQQMG---EAGM--GDGRENEDFP 107
Query: 122 EIRSPHNGIYAIQTQDTRHKT----------QDTSMLPLYRKGDILILNSAIQVNCGDRL 171
EI A + SM P G+++++++ GD L
Sbjct: 108 EIVRTVEYSEAFLRSLLGFLPPPGRLVLVTGKGDSMTPTIAPGEVVLVDTGTHTFEGDGL 167
Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K L R + ++S N P I
Sbjct: 168 YLVNVGHGHQIKRLQDR--GRLFVVSDNHLMPSFEFPEEGI 206
>gi|283456410|ref|YP_003360974.1| LexA repressor [Bifidobacterium dentium Bd1]
gi|283103044|gb|ADB10150.1| LexA repressor [Bifidobacterium dentium Bd1]
Length = 164
Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 25/155 (16%)
Query: 64 ATNETICQLLDLPFS-DGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNKWNTV 118
A+ + +++ P D + ++PL+ +G + D + +
Sbjct: 18 ASGNGVAEVIPFPTGVDSSESIMASHDVPLVGRIAAGVPITAEQHID----------DVM 67
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+PE + ++ ++ SM GD +++ GD ++
Sbjct: 68 RLPERLTGTGNLFMLE-------VHGDSMIDAAICDGDFVVVREQHTAENGD-IVAALLD 119
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + + L+ N Y ++I
Sbjct: 120 DEATVKTF-RKDHGHVWLIPHNPAYSPIDGTHAEI 153
>gi|302868440|ref|YP_003837077.1| peptidase S24/S26A/S26B, conserved region [Micromonospora
aurantiaca ATCC 27029]
gi|315505184|ref|YP_004084071.1| peptidase s24/s26a/s26b, conserved region [Micromonospora sp. L5]
gi|302571299|gb|ADL47501.1| Peptidase S24/S26A/S26B, conserved region [Micromonospora
aurantiaca ATCC 27029]
gi|315411803|gb|ADU09920.1| Peptidase S24/S26A/S26B, conserved region [Micromonospora sp. L5]
Length = 103
Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
++ + SM P R GD LI+ GD ++ + R
Sbjct: 5 LRRRWRLVVVSGQSMAPTLRDGDRLIVRVGRAPAVGDLVVFRARD 49
>gi|221205602|ref|ZP_03578617.1| prophage transcriptional regulator [Burkholderia multivorans CGD2]
gi|221174440|gb|EEE06872.1| prophage transcriptional regulator [Burkholderia multivorans CGD2]
Length = 144
Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201
SM P GD L++N ++ + ++ K L ++ ++S N
Sbjct: 57 DGMSMAPRIEDGDSLVVNYKEHTIASGKVYVFTFAYELFIKRLYRGT-DAVRVVSDNPDK 115
Query: 202 --YPVDTVEMS---DIEWIARILWAS 222
YP + D+ IAR++ S
Sbjct: 116 SRYPDWQIPAERLNDLTVIARVVAVS 141
>gi|82777173|ref|YP_403522.1| repressor protein CI [Shigella dysenteriae Sd197]
gi|309788320|ref|ZP_07682924.1| repressor protein CI [Shigella dysenteriae 1617]
gi|81241321|gb|ABB62031.1| repressor protein CI [Shigella dysenteriae Sd197]
gi|308923702|gb|EFP69205.1| repressor protein CI [Shigella dysenteriae 1617]
Length = 237
Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 34/198 (17%)
Query: 14 DRMAERHNLTPSGLAR-KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
+ +A +T S +++ AG++ + N S + + KIL N +
Sbjct: 35 ESLAYELGVTQSAVSQLMAGIN--AINAS--HAAQ----------LAKIL---NVKVGDF 77
Query: 73 ----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
+ L + T E PLL +G+ D + + +
Sbjct: 78 SPSLAKSIAEMALAI-EEPLTRVPAYEYPLLSCVQAGAFSM-DDISYTAKDAIKWISTTT 135
Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
S + ++ P + +G +++++ ++ GD + + +
Sbjct: 136 KASDRSFWLEVKGHSMTAPQGG---KPSFPEGMLILVDPEREIEDGDFCVARMNGDEFTF 192
Query: 183 KVLISRRGRSIDLMSLNC 200
K I G++ L LN
Sbjct: 193 KRFIRESGKAY-LEPLNP 209
>gi|85716978|ref|ZP_01047941.1| LexA repressor [Nitrobacter sp. Nb-311A]
gi|85696180|gb|EAQ34075.1| LexA repressor [Nitrobacter sp. Nb-311A]
Length = 233
Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ +P YA++ + SM GD+ ++ + GD ++
Sbjct: 132 TISLPPDMLGTGEHYALE-------VRGDSMVEAGILDGDLALIQRNQTADTGDIVVALI 184
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K R SI L N Y V + + ++ R++
Sbjct: 185 DDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVQIQGRLI 227
>gi|317493438|ref|ZP_07951859.1| LexA repressor [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918381|gb|EFV39719.1| LexA repressor [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 202
Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDI 156
D P G P + H G Y + D + SM + GD+
Sbjct: 72 DETGLPL-IGRVAAGEPLLAQEHIEGHYQVDPSLFKPNADFLLRVNGMSMRDIGILDGDL 130
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
L ++ V G ++++ ++ K L + G + L+ N + V++ +
Sbjct: 131 LAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNIVQLLPENSDFEPIVVDLRE 183
>gi|168765271|ref|ZP_02790278.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
gi|168798579|ref|ZP_02823586.1| repressor protein CI [Escherichia coli O157:H7 str. EC508]
gi|217327029|ref|ZP_03443112.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588]
gi|189364926|gb|EDU83342.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
gi|189378869|gb|EDU97285.1| repressor protein CI [Escherichia coli O157:H7 str. EC508]
gi|217319396|gb|EEC27821.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588]
gi|315274298|gb|ADU03706.1| repressor protein CI [Enterobacteria phage VT2phi_272]
gi|326340128|gb|EGD63932.1| repressor protein CI [Escherichia coli O157:H7 str. 1125]
Length = 237
Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 14/145 (9%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
S+ K +I ++ + T E PLL +G+ D + +
Sbjct: 79 PSLAK-------SIAEMA--LAIEEPLTRVPAYEYPLLSCVQAGAFSM-DDISYTAKDAI 128
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ S + ++ P + +G +++++ ++ GD + +
Sbjct: 129 KWISTTTKASDRSFWLEVKGHSMTAPQGG---KPSFPEGMLILVDPEREIEDGDFCVARM 185
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC 200
+ K I G++ L LN
Sbjct: 186 NGDEFTFKRFIRESGKAY-LEPLNP 209
>gi|27364582|ref|NP_760110.1| LexA repressor [Vibrio vulnificus CMCP6]
gi|37678307|ref|NP_932916.1| LexA repressor [Vibrio vulnificus YJ016]
gi|320154986|ref|YP_004187365.1| SOS-response repressor and protease LexA [Vibrio vulnificus
MO6-24/O]
gi|29427708|sp|Q8DD47|LEXA_VIBVU RecName: Full=LexA repressor
gi|44888093|sp|Q7MQ85|LEXA_VIBVY RecName: Full=LexA repressor
gi|27360701|gb|AAO09637.1| LexA repressor [Vibrio vulnificus CMCP6]
gi|37197046|dbj|BAC92887.1| SOS-response transcriptional repressor [Vibrio vulnificus YJ016]
gi|319930298|gb|ADV85162.1| SOS-response repressor and protease LexA [Vibrio vulnificus
MO6-24/O]
Length = 207
Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ D+ K L + G +
Sbjct: 112 PQADFLLRVHGESMKDIGIMDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERK-GST 169
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L + N + V+++
Sbjct: 170 VLLHAENEEFAPIEVDLTS 188
>gi|260599564|ref|YP_003212135.1| LexA repressor [Cronobacter turicensis z3032]
gi|260218741|emb|CBA34089.1| LexA repressor [Cronobacter turicensis z3032]
Length = 202
Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++ +
Sbjct: 165 VELLPENNEFKPIVVDLRE 183
>gi|260576320|ref|ZP_05844311.1| SOS-response transcriptional repressor, LexA [Rhodobacter sp. SW2]
gi|259021391|gb|EEW24696.1| SOS-response transcriptional repressor, LexA [Rhodobacter sp. SW2]
Length = 228
Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM GDI+++ GD ++ + K R I
Sbjct: 138 GNHYALEVKGDSMIEAGINDGDIVVIREQNTAENGDIVVALVEDSEATLKRFRRRGA-MI 196
Query: 194 DLMSLNCCYPVDTVE 208
L + N Y
Sbjct: 197 ALEAANPAYETRVYA 211
>gi|170744745|ref|YP_001773400.1| LexA repressor [Methylobacterium sp. 4-46]
gi|229621226|sp|B0UGH4|LEXA_METS4 RecName: Full=LexA repressor
gi|168199019|gb|ACA20966.1| transcriptional repressor, LexA family [Methylobacterium sp. 4-46]
Length = 239
Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD++++ N GD ++ + K L R G SI
Sbjct: 149 GEHYALEVRGDSMIEAGILDGDLVVIRRQDTANTGDIVVALIDDEEATLKRLRRR-GSSI 207
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + + R++
Sbjct: 208 ALEAANPAYETRVLGPDRVRIQGRLV 233
>gi|319761962|ref|YP_004125899.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus
denitrificans BC]
gi|317116523|gb|ADU99011.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus
denitrificans BC]
Length = 238
Score = 39.5 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 19/154 (12%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--------GVFPTGNKWNTVGVPEIR 124
LP I L +GS G + G P KW + +P R
Sbjct: 83 AGLPSGPAPAPAGDSDSISLPLLSATGSMGNGNDLITEDVILGEVPVSRKWLALNLPGSR 142
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
A+Q SM R GD I+++ Q + + + K
Sbjct: 143 PE-----ALQLVHAY----GDSMGDTLRSGDFAIVDTDYQFADVSGVYVLQANNQLFIKR 193
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ + + ++ S N V TVE+ D RI
Sbjct: 194 ISRKLDGTHEITSDNPN--VRTVEVLDGSQQVRI 225
>gi|157734756|dbj|BAF80762.1| prophage repressor [Enterobacteria phage P22]
Length = 216
Score = 39.5 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 28/164 (17%)
Query: 53 PSTESIFKILAATNETICQLL----DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
P+ ES+ + A + LL + + PL+ + +G
Sbjct: 45 PNGESLLALSKALQCSPDYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQ-------- 96
Query: 109 FPTGNKWNTVGVP----EIRSPHNGIYAIQTQDTRHKTQDTSM-LPL---YRKGDILILN 160
W P I + H+ Q SM P +G I++++
Sbjct: 97 ------WMEAVEPYHKRAIENWHDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVD 150
Query: 161 SAIQVNCGDRLLIKP-RTGDIVAKVLISRRGRSIDLMSLNCCYP 203
++ G ++ K + K L+ GR L LN YP
Sbjct: 151 PEVEPRNGKLVVAKLEGENEATFKKLVMDAGRKF-LKPLNPQYP 193
>gi|59714374|ref|YP_207148.1| DNA-binding protein RDGA [Vibrio fischeri ES114]
gi|59482651|gb|AAW88260.1| DNA-binding protein RDGA [Vibrio fischeri ES114]
Length = 203
Score = 39.5 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 143 QDTSMLPLYRKGDILIL-NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P+ +L++ +S Q+ G +I+ GD++ LIS + L S N
Sbjct: 120 HGDSMEPVLNDDALLVIDSSKKQIRDGSMYVIR--QGDLIRVKLISLDNNGLKLKSYNQS 177
Query: 202 YPVDTVE-MSDIEWIARILWAS 222
Y + E D+E + +++W S
Sbjct: 178 YHDEIYEDYQDVEILGKVIWYS 199
>gi|94495894|ref|ZP_01302473.1| putative phage repressor [Sphingomonas sp. SKA58]
gi|94424586|gb|EAT09608.1| putative phage repressor [Sphingomonas sp. SKA58]
Length = 222
Score = 39.5 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
P +P L S GG D G + H G+
Sbjct: 73 AAPAPVRGRGLPAVVSVPRLALGASAGGGTLDDDERTAG----VMAFDARWLRHLGVR-- 126
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRGR- 191
+ + + SM P GD ++++ D + + G ++ K + R
Sbjct: 127 PQRVSIIRVDGESMAPTLSDGDDIMVDHDDDADRLRDGVYVLRLDGVLMVKRIAMGPLRG 186
Query: 192 SIDLMSLNCCYPVDT-VEMSDIEWIARILW 220
++S N YP T ++ + ++ + R++W
Sbjct: 187 RFSVLSDNAHYPDWTDIDPTLVDIVGRVVW 216
>gi|296106561|ref|YP_003618261.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Legionella pneumophila 2300/99 Alcoy]
gi|295648462|gb|ADG24309.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Legionella pneumophila 2300/99 Alcoy]
Length = 168
Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 42 KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
KR G GR R T A ++ QL +L R ++P+ F
Sbjct: 7 KRVGA-GRPRGEPT-------KAVRISLSQLAEL----ERLKSHVSYQLPV--FASKIQ- 51
Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
FP+ + + + + + SM+ GD L+++
Sbjct: 52 -----AGFPSPAD-DYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVD 103
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-IEW 214
+I+ + G R++I G++ K L + GR + L+ N P+D E S+ + W
Sbjct: 104 RSIEPSDG-RIVIAAVNGELTVKRLSKKGGR-VQLLPANPKFQPIDITEGSEMVIW 157
>gi|215486411|ref|YP_002328842.1| DNA polymerase V subunit UmuD [Escherichia coli O127:H6 str.
E2348/69]
gi|215264483|emb|CAS08850.1| DNA polymerase V, subunit D [Escherichia coli O127:H6 str.
E2348/69]
Length = 139
Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V + + + + K SM+ GD+LI++SAI +
Sbjct: 25 GFPSPAA-DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I + K L R ++ L+ +N Y T+ D
Sbjct: 82 HGD-IIIAAVDDEFTVKKLQLRP--TVQLIPMNSAYSPITISSED 123
>gi|126737889|ref|ZP_01753619.1| LexA repressor [Roseobacter sp. SK209-2-6]
gi|126721282|gb|EBA17986.1| LexA repressor [Roseobacter sp. SK209-2-6]
Length = 240
Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
YA++ + SM+ GDI+++ + GD ++ + + K + R
Sbjct: 153 YALE-------VRGDSMIDAGINDGDIVVIRETDTADDGDIVVALVQNEEATLKRIFRRD 205
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G +I L + N Y T ++ R++
Sbjct: 206 G-AIALEAENPAYETRTYPEDQVQIQGRLV 234
>gi|260911961|ref|ZP_05918525.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633908|gb|EEX52034.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 231
Score = 39.2 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKG-DILI--LNSAIQVNCGDRL-LIKPRTGDIVAKVLISR 188
I+ D SM P Y G +LI +N ++ G R+ ++ G ++ ++ S
Sbjct: 136 IKGVDYAITVSGESMSPEYPSGSQVLIKKINERAFIDWG-RVYVLDTCNGTVIKRLFPSD 194
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ S+N YP V M D+ + R+L
Sbjct: 195 AAGCVVCKSINPEYPSFEVSMEDVYGVYRVL 225
>gi|153001771|ref|YP_001367452.1| putative phage repressor [Shewanella baltica OS185]
gi|151366389|gb|ABS09389.1| putative phage repressor [Shewanella baltica OS185]
Length = 241
Score = 39.2 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 19/89 (21%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA---------KVLISRRGRSID 194
SM P G + VN D+ ++ G I A KVL ++
Sbjct: 159 GNSMEPYIPDGTTV------AVNTNDKKIV---DGKIYAINENGWKRIKVLRRSSPDKLN 209
Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222
++S N Y + +E I R+ W S
Sbjct: 210 ILSFNSDEYEPEDKPAESVEIIGRVFWYS 238
>gi|320013822|gb|ADV97393.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis biovar Medievalis str. Harbin 35]
Length = 202
Score = 39.2 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L+++ V G ++++ ++ K L + G
Sbjct: 107 PGADFLLRVNGMSMRDIGILDGDLLVVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VHLLPENSEFQPIVVDLRE 183
>gi|145640116|ref|ZP_01795706.1| putative transcriptional regulator [Haemophilus influenzae PittII]
gi|145270773|gb|EDK10700.1| putative transcriptional regulator [Haemophilus influenzae PittII]
Length = 251
Score = 39.2 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P RKGD + L++ I GD + G + K + G L+S N
Sbjct: 161 VPTDSMEPTIRKGDWVFLDTNIDYYNGDGVYAFAIDGALFIKRIQKLVGGGYRLLSDNKD 220
Query: 202 YPVDTVEMSDIEWIARIL 219
Y + +I A+ +
Sbjct: 221 YDPQDI-TDEICQTAKFV 237
>gi|145629903|ref|ZP_01785693.1| putative transcriptional regulator [Haemophilus influenzae 22.1-21]
gi|144977712|gb|EDJ87665.1| putative transcriptional regulator [Haemophilus influenzae 22.1-21]
Length = 191
Score = 39.2 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P RKGD + L++ I GD + G + K + G L+S N
Sbjct: 101 VPTDSMEPTIRKGDWVFLDTNIDYYNGDGVYAFAIDGALFIKRIQKLVGGGYRLLSDNKD 160
Query: 202 YPVDTVEMSDIEWIARIL 219
Y + +I A+ +
Sbjct: 161 YDPQDI-TDEICQTAKFV 177
>gi|54293947|ref|YP_126362.1| hypothetical protein lpl1004 [Legionella pneumophila str. Lens]
gi|53753779|emb|CAH15239.1| hypothetical protein lpl1004 [Legionella pneumophila str. Lens]
gi|307609767|emb|CBW99282.1| hypothetical protein LPW_10611 [Legionella pneumophila 130b]
Length = 168
Score = 39.2 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 42 KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
KR G GR R T A ++ QL +L R ++P+ F
Sbjct: 7 KRVGA-GRPRGEPT-------KAVRISLSQLAEL----ERLKSHVSYQLPV--FASKIQ- 51
Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
FP+ + + + + + SM+ GD L+++
Sbjct: 52 -----AGFPSPAD-DYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVD 103
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-IEW 214
+I+ + G R++I G++ K L + GR + L+ N P+D E S+ + W
Sbjct: 104 RSIEPSDG-RIVIAAVNGELTVKRLSKKGGR-VQLLPANPKFQPIDITEDSEMVIW 157
>gi|189423406|ref|YP_001950583.1| phage repressor [Geobacter lovleyi SZ]
gi|189419665|gb|ACD94063.1| putative phage repressor [Geobacter lovleyi SZ]
Length = 230
Score = 39.2 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 140 HKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
Q SM P GD ILI +V G +++ ++ K L + S+ + S
Sbjct: 142 ISVQGDSMEPTLSNGDLILIDVRTSKVEDGAIYVVQYDD-VLLVKRLQKKYDGSVVIRSD 200
Query: 199 NCCYPVDTVEMSD---IEWIARILWA 221
N Y + + + ++ + R++WA
Sbjct: 201 NTLYEPEILHGDEALNLKIVGRVVWA 226
>gi|300214145|gb|ADJ78561.1| CI-like repressor, phage associated [Lactobacillus salivarius CECT
5713]
Length = 258
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
D + SM P + G I+ +N +V ++ + V K++
Sbjct: 168 PAHDFALRVNGDSMTPTFSDGQIIYVNKIYDTXEVRNNQFVIAELNGDSYVKKIVFDDNR 227
Query: 191 RSIDLMSLNCCYPVDTVEMSD 211
++ L+SLN Y ++ SD
Sbjct: 228 KNCRLISLNKKYADIEIKKSD 248
>gi|291288944|ref|YP_003517447.1| UmuD [Klebsiella pneumoniae]
gi|290792076|gb|ADD63402.1| UmuD [Klebsiella pneumoniae]
Length = 148
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 32 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLY-NGDLLVVDSAEKP 87
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
GD +++ G+ K L+ ++ M S + YP
Sbjct: 88 RHGD-IVVASVQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 128
>gi|241763576|ref|ZP_04761627.1| putative phage repressor [Acidovorax delafieldii 2AN]
gi|241367169|gb|EER61523.1| putative phage repressor [Acidovorax delafieldii 2AN]
Length = 201
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 144 DTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P + GDIL++++ I D + + + K + R +++ S N
Sbjct: 115 GDSMSPTFEDGDILLVDTGIKDPKIIDGVYVMAANDRVYIKRVRQRMDGVVEISSDNATV 174
Query: 203 PVDTVEMSD--IEWIARILW 220
V D I+ + R++W
Sbjct: 175 KTVDVLNGDHRIDILGRVVW 194
>gi|226330488|ref|ZP_03806006.1| hypothetical protein PROPEN_04406 [Proteus penneri ATCC 35198]
gi|225201283|gb|EEG83637.1| hypothetical protein PROPEN_04406 [Proteus penneri ATCC 35198]
Length = 212
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
L + + + +++P+L + +G F + ++
Sbjct: 65 LYGISSKENISVITTMRKLPVLSYVQAGK---FTE--YLATEIYDETL-----EYLETSL 114
Query: 132 AIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVL 185
+ + SM +P +G +I++ A + G ++ + + ++ K L
Sbjct: 115 KVSPSSFALTVRGDSMTNPSGMPSIPEGAKVIVDPAAEAISGKIVVARLTGSDEVTIKKL 174
Query: 186 ISRRGRSIDLMSLNCCYPV 204
I L LN YP
Sbjct: 175 IIDGPNKY-LSPLNPRYPN 192
>gi|171742503|ref|ZP_02918310.1| hypothetical protein BIFDEN_01615 [Bifidobacterium dentium ATCC
27678]
gi|171278117|gb|EDT45778.1| hypothetical protein BIFDEN_01615 [Bifidobacterium dentium ATCC
27678]
Length = 244
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 25/155 (16%)
Query: 64 ATNETICQLLDLPFS-DGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNKWNTV 118
A+ + +++ P D + ++PL+ +G + D + +
Sbjct: 98 ASGNGVAEVIPFPTGVDSSESIMASHDVPLVGRIAAGVPITAEQHID----------DVM 147
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+PE + ++ ++ SM GD +++ GD ++
Sbjct: 148 RLPERLTGTGNLFMLE-------VHGDSMIDAAICDGDFVVVREQHTAENGD-IVAALLD 199
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + + L+ N Y ++I
Sbjct: 200 DEATVKTF-RKDHGHVWLIPHNPAYSPIDGTHAEI 233
>gi|270614132|ref|ZP_06221718.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
gi|270318000|gb|EFA29286.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
Length = 183
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 100 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEE 159
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + E+ DI + ++ W S
Sbjct: 160 HPDEIAELQDISVLGKVFWYS 180
>gi|270619286|ref|ZP_06221803.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
gi|270317856|gb|EFA29200.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
Length = 96
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 13 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEE 72
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + E+ DI + ++ W S
Sbjct: 73 HPDEIAELQDISVLGKVFWYS 93
>gi|270635221|ref|ZP_06222072.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
gi|270317432|gb|EFA28935.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
Length = 107
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 24 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEE 83
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + E+ DI + ++ W S
Sbjct: 84 HPDEIAELQDISVLGKVFWYS 104
>gi|270639499|ref|ZP_06222109.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
gi|270317366|gb|EFA28895.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
[Haemophilus influenzae HK1212]
Length = 87
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 4 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEE 63
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + E+ DI + ++ W S
Sbjct: 64 HPDEIAELQDISVLGKVFWYS 84
>gi|68250056|ref|YP_249168.1| transcriptional regulator [Haemophilus influenzae 86-028NP]
gi|145629482|ref|ZP_01785280.1| predicted transcriptional regulator [Haemophilus influenzae
22.1-21]
gi|145638978|ref|ZP_01794586.1| predicted transcriptional regulator [Haemophilus influenzae PittII]
gi|68058255|gb|AAX88508.1| predicted transcriptional regulator [Haemophilus influenzae
86-028NP]
gi|144978325|gb|EDJ88089.1| predicted transcriptional regulator [Haemophilus influenzae
22.1-21]
gi|145271950|gb|EDK11859.1| predicted transcriptional regulator [Haemophilus influenzae PittII]
gi|309750942|gb|ADO80926.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
Length = 232
Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P+ G + ++ + ++ G + K+L + + + S N
Sbjct: 149 DGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEE 208
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + E+ DI + ++ W S
Sbjct: 209 HPDEIAELQDISVLGKVFWYS 229
>gi|308187276|ref|YP_003931407.1| LexA repressor [Pantoea vagans C9-1]
gi|308057786|gb|ADO09958.1| LexA repressor [Pantoea vagans C9-1]
Length = 210
Score = 39.2 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
A+ Q + ++ +M P +GD++I++ ++ GD +L + ++
Sbjct: 112 ALSQQSFAIRVEEQAMTPAILRGDVVIIDPSLAPQPGDCVLAMQQQNALLRTWRQRGSEE 171
Query: 192 SI---DLMSLNCCYPVDTVEMSDIEWI 215
+ +L +N +P ++ I
Sbjct: 172 GVAQFELAPVNINFPELHSSRDSLQLI 198
>gi|152973797|ref|YP_001338836.1| ImpA-like protein; UV protection [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|300837030|ref|YP_003754084.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae]
gi|329998716|ref|ZP_08303191.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
gi|150958579|gb|ABR80606.1| ImpA-like protein; UV protection [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|299474834|gb|ADJ18658.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae]
gi|328538586|gb|EGF64689.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
Length = 143
Score = 39.2 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 27 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLY-NGDLLVVDSAEKP 82
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
GD +++ G+ K L+ ++ M S + YP
Sbjct: 83 RHGD-IVVASVQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 123
>gi|190576850|ref|YP_001966182.1| micA(umuD) [Klebsiella pneumoniae]
gi|110264434|gb|ABG56797.1| micA(umuD) [Klebsiella pneumoniae]
Length = 143
Score = 39.2 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 27 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLY-NGDLLVVDSAEKP 82
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
GD +++ G+ K L+ ++ M S + YP
Sbjct: 83 RHGD-IVVASMQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 123
>gi|312138044|ref|YP_004005380.1| lexa repressor [Rhodococcus equi 103S]
gi|311887383|emb|CBH46695.1| LexA repressor [Rhodococcus equi 103S]
Length = 212
Score = 39.2 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 31/179 (17%)
Query: 40 KSKRFGIEGR-NRWPSTESIFKILAAT--------NETICQLLD----LPFSDGRTTEKK 86
S R + R ST ++ K L A ++ + LD L S + +
Sbjct: 32 PSTREIADAVGLR--STSTVSKHLKALEDKGFLRRGGSMTRQLDVRPFLTGSAPGRSTEN 89
Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
+P++ +G+ + + + +P ++A+ + + S
Sbjct: 90 TVTVPVVGDIAAGA------PILAEEHADEMLSLPRELVGSGTVFAL-------RVRGES 136
Query: 147 ML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
M+ GD +++ + + G ++ G+ KVL R G + L N Y V
Sbjct: 137 MVDAAICDGDTVVVRRQEEAHSG-EIVAAMIDGEATVKVLRRRNGHVL-LEPRNPAYEV 193
>gi|161508174|ref|YP_001578145.1| Signal peptidase [Lactobacillus helveticus DPC 4571]
gi|160349163|gb|ABX27837.1| Signal peptidase [Lactobacillus helveticus DPC 4571]
Length = 213
Score = 39.2 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
SM P ++ GD LI Q+ G+ +++K
Sbjct: 44 TVSGPSMQPTFQNGDRLISIRHAQIKRGEVVIVKAPD 80
>gi|260101948|ref|ZP_05752185.1| signal peptidase I [Lactobacillus helveticus DSM 20075]
gi|112148591|gb|ABI13579.1| type I signal peptidase-like protein [Lactobacillus helveticus
CNRZ32]
gi|260084260|gb|EEW68380.1| signal peptidase I [Lactobacillus helveticus DSM 20075]
gi|323467442|gb|ADX71129.1| Signal peptidase I [Lactobacillus helveticus H10]
gi|328464083|gb|EGF35566.1| Signal peptidase [Lactobacillus helveticus MTCC 5463]
Length = 213
Score = 39.2 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
SM P ++ GD LI Q+ G+ +++K
Sbjct: 44 TVSGPSMQPTFQNGDRLISIRHAQIKRGEVVIVKAPD 80
>gi|229541109|ref|ZP_04430169.1| signal peptidase I [Bacillus coagulans 36D1]
gi|229325529|gb|EEN91204.1| signal peptidase I [Bacillus coagulans 36D1]
Length = 183
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+SM+P + GD +I+N D ++ G K +I G I+
Sbjct: 34 APIVVDGSSMMPTLKNGDRMIVNKIGSPKRFDIIVFHAPEGKDYIKRVIGLPGDRIE 90
>gi|317052100|ref|YP_004113216.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5]
gi|316947184|gb|ADU66660.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum
indicum S5]
Length = 165
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 22/148 (14%)
Query: 67 ETICQL-----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
++C + + IPL G S FP+ + + V
Sbjct: 13 ASLCLFARKEPMSVTVLGACPERGAPPPIPLF------VEGV--SAGFPSPAR-DYVD-- 61
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
+ + SM ++ GDILI++ +++ GD ++ G+
Sbjct: 62 RSLDLNELCIRHPAATYFVRADGDSMIGAGIF-SGDILIVDRSLEAADGDIIIACLH-GE 119
Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV 207
++ K L + + L ++N YP +
Sbjct: 120 LLVKRLRLQ--GQVRLEAMNPDYPPLEL 145
>gi|152972907|ref|YP_001338053.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238892515|ref|YP_002917249.1| LexA repressor [Klebsiella pneumoniae NTUH-K2044]
gi|262045553|ref|ZP_06018574.1| LexA repressor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|330004867|ref|ZP_08305049.1| repressor LexA [Klebsiella sp. MS 92-3]
gi|166224634|sp|A6TGV2|LEXA_KLEP7 RecName: Full=LexA repressor
gi|150957756|gb|ABR79786.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238544831|dbj|BAH61182.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259037112|gb|EEW38362.1| LexA repressor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|328536486|gb|EGF62828.1| repressor LexA [Klebsiella sp. MS 92-3]
Length = 202
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDEEVTVKRLKKQ-GNV 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFSPIVVDLRQ 183
>gi|119384874|ref|YP_915930.1| LexA repressor [Paracoccus denitrificans PD1222]
gi|166224639|sp|A1B3Z0|LEXA_PARDP RecName: Full=LexA repressor
gi|119374641|gb|ABL70234.1| SOS-response transcriptional repressor, LexA [Paracoccus
denitrificans PD1222]
Length = 232
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q + + + SM GD++++ GD ++ + K R+G
Sbjct: 141 QDRHYALEVRGDSMIEAGINDGDVVVIREQNAAESGDIVVALVDGYEATLKR-YRRKGNM 199
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L + N Y + + R++
Sbjct: 200 IALEAANPAYETRVLPEDKVRIQGRLV 226
>gi|94987278|ref|YP_595211.1| transcriptional regulator [Lawsonia intracellularis PHE/MN1-00]
gi|94731527|emb|CAJ54890.1| predicted transcriptional regulator [Lawsonia intracellularis
PHE/MN1-00]
Length = 246
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 140 HKTQDTSMLPLYRKGDI-LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ SM P GDI LI + G ++ I KVL ++ G+ I L S
Sbjct: 156 FRVDGDSMEPRVSDGDIALIDQGQVAPRAGKIYAVRLED-VIYLKVLNTQPGKLI-LSSY 213
Query: 199 NCCYPVDTVEM-----------SDIEWIAR 217
N Y + WI R
Sbjct: 214 NTDYTPIEFDTRGDMADCFSIIGRAVWIGR 243
>gi|2293118|gb|AAB68649.1| LexA [unidentified cloning vector]
Length = 230
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|152965474|ref|YP_001361258.1| SOS-response transcriptional repressor, LexA [Kineococcus
radiotolerans SRS30216]
gi|151359991|gb|ABS02994.1| SOS-response transcriptional repressor, LexA [Kineococcus
radiotolerans SRS30216]
Length = 244
Score = 39.2 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
LLD + + + +P++ +G + + +PE +
Sbjct: 107 LLDGTEAGSAENRPRPRYVPVVGRIAAGG------PILAEQLVEDVFALPEQLVGTGEHF 160
Query: 132 AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+ + SM GD +++ GD ++ G+ KVL + G
Sbjct: 161 ML-------RVVGESMLEAAICDGDWVVVRQQPTAENGD-VVAAMIDGEATVKVLQRKDG 212
Query: 191 RSIDLMSLNCCYPV 204
+ L+ N +
Sbjct: 213 -HVKLLPRNPLFDP 225
>gi|254426362|ref|ZP_05040078.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
gi|196187776|gb|EDX82742.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
Length = 142
Score = 39.2 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAI 163
S FP+ + + + H + + + SM ++ + D+LI++ +
Sbjct: 25 SAGFPS-PATDHLDGHINLNEHLIPH--PSATFLVRADGWSMVGEGIHHE-DLLIVDRSE 80
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G R+++ G++ K L + ++ LM+ N YP ++E+ +
Sbjct: 81 EPRHG-RVVVAAIDGELTVKKLCQKEQQTF-LMAANPDYP--SIELGE 124
>gi|156933900|ref|YP_001437816.1| hypothetical protein ESA_01726 [Cronobacter sakazakii ATCC BAA-894]
gi|156532154|gb|ABU76980.1| hypothetical protein ESA_01726 [Cronobacter sakazakii ATCC BAA-894]
Length = 143
Score = 39.2 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
FP+ + V H ++ + SM GD+L+++SA++
Sbjct: 29 GFPS-PAQDYVEKRVSLDAHCIVH--PNATYFLRAAGESMNGAGIEDGDLLVVDSALKPQ 85
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
GD +++ G+ K L L+ +N +
Sbjct: 86 EGD-IVVAALEGEFTVKTLRLHPV--AQLVPMNPDFAP 120
>gi|121998067|ref|YP_001002854.1| putative prophage repressor [Halorhodospira halophila SL1]
gi|121589472|gb|ABM62052.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Halorhodospira halophila SL1]
Length = 142
Score = 39.2 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + V + + SML + GD+L+++ A++
Sbjct: 26 AAGFPS-PAQDYVD--RALDLNELCIEHPAATYFVRAAGESMLGVGIHPGDVLVVDRALE 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
D ++I G++ K L R ++ L++ N +P + ++
Sbjct: 83 ARHRD-IVIAAWQGELTVKRLELRP--TLRLVAENDAFPPIDIAEPEM 127
>gi|330867023|gb|EGH01732.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 202
Score = 39.2 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ E+P+L +G+ P G + + + D +
Sbjct: 73 PRPELLELPVLGRVAAGA---------PIGPDLDIHTTLHLDRSTFT----RVPDYLLRV 119
Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
Q SM GD++ ++ Q + G ++ + G++ K L + L+ N
Sbjct: 120 QGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLHR-SADQVRLLPRNPA 177
Query: 202 YPVDTVEMSD 211
Y V
Sbjct: 178 YEPIIVTPDQ 187
>gi|156147292|gb|ABU53867.1| cje0215 [Campylobacter phage CGC-2007]
Length = 111
Score = 39.2 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL + G I +++ +I R G + K ++ + I L SLN Y
Sbjct: 32 GESMEPLIKDGSICVIDRNKTFKNKSICVINTRDG-LFIKQVLKQDDGVI-LHSLNPLYK 89
Query: 204 V 204
Sbjct: 90 D 90
>gi|154252141|ref|YP_001412965.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
gi|154156091|gb|ABS63308.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
Length = 239
Score = 39.2 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
A + D SM P + GDIL+ +++ G + + G ++ K L +
Sbjct: 142 ADPASLIAIEAADNSMSPTFGPGDILLADTSEPRLRGSGIYVFASGGALLVKRLQVKLDG 201
Query: 192 SIDLMSLNCC-YPVDTVEMSDIE---WIARILW 220
+ S N YP + +E + +E + R++W
Sbjct: 202 GFIVSSDNAELYPAEEIERTALERVKIVGRVIW 234
>gi|146311865|ref|YP_001176939.1| DNA polymerase V subunit UmuD [Enterobacter sp. 638]
gi|145318741|gb|ABP60888.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Enterobacter sp. 638]
Length = 139
Score = 39.2 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
FP+ + V + + + + K SM GD+L+++S+
Sbjct: 25 GFPSPAA-DYVE--QRIDLNELLVQHPSATYFVKAAGDSMIEAGISDGDLLVVDSSRTAE 81
Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++I GD K L R + L +N Y + D
Sbjct: 82 HGD-IVIAAVEGDFTVKRLQLRPN--VQLNPMNSAYSPIIIGSED 123
>gi|295106591|emb|CBL04134.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Gordonibacter pamelaeae 7-10-1-b]
Length = 215
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 17/201 (8%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI-CQ 71
I R+ H LT L + AG+ P + S+ R + + + + ++
Sbjct: 7 IKRLRVEHCLTQGELGKIAGVSPMAV--SQWENGRAVPRMGAIQRMADYFGISKSSLIDN 64
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
D + E P+ +G + P +P + H +
Sbjct: 65 AADGFVAGSVHYEVTSLTAPVYGRISAGDA----LEMLPV--TEEAYVIPPVAESHPDGF 118
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLISRRG 190
+ SM + G ++ + + +V GD + + D + ++ +
Sbjct: 119 FL-------TVSGDSMDKIMPNGSLVYFDKSAEVRSGDIVAVTVNGDDATMKRIFFAGDT 171
Query: 191 RSIDLMSLNCCYPVDTVEMSD 211
+ S N + +++ SD
Sbjct: 172 IVLHPESNNPSHRDRSIDASD 192
>gi|239928988|ref|ZP_04685941.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672]
gi|291437327|ref|ZP_06576717.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672]
gi|291340222|gb|EFE67178.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672]
Length = 145
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ + A + SM+P GD L+++ ++ GD ++++
Sbjct: 3 PELPQDAERVRA-PLPFGVAEVTGPSMVPTLHHGDRLLVHYGARIKRGDVVVLR 55
>gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429]
gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429]
Length = 206
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 19/161 (11%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTT--EKKEKEIPLLYFPPSGSGGFFDSGVFP 110
PS E + + + + L + K K++PL P S G F + ++
Sbjct: 42 PSVEVLKSLADYFDVAVDYFLSDKPGQTEVEFVDIKFKKVPLYSAPVSAGNGAFPNDIYV 101
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
G H+ +A+ K SM P+ G +L + GD
Sbjct: 102 LGE--------INAINHDVDFAV-------KVVGNSMEPIAPDGSVLFVKKQNYAFNGD- 145
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+++ G I K + + + I L+S N Y VE D
Sbjct: 146 MIVCTYDGWIYVKWYVKQNDK-ILLLSENPTYTPIVVEPKD 185
>gi|306822416|ref|ZP_07455794.1| repressor LexA [Bifidobacterium dentium ATCC 27679]
gi|304553961|gb|EFM41870.1| repressor LexA [Bifidobacterium dentium ATCC 27679]
Length = 244
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 25/155 (16%)
Query: 64 ATNETICQLLDLPFS-DGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNKWNTV 118
A+ + +++ P D + ++PL+ +G + D + +
Sbjct: 98 ASGNGVAEVIPFPTGVDSSESIMGSHDVPLVGRIAAGVPITAEQHID----------DVM 147
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+PE + ++ ++ SM GD +++ GD ++
Sbjct: 148 RLPERLTGTGNLFMLE-------VHGDSMIDAAICDGDFVVVREQHTAENGD-IVAALLD 199
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + + L+ N Y ++I
Sbjct: 200 DEATVKTF-RKDHGHVWLIPHNPAYSPIDGTHAEI 233
>gi|293556759|ref|ZP_06675322.1| signal peptidase I [Enterococcus faecium E1039]
gi|291601091|gb|EFF31380.1| signal peptidase I [Enterococcus faecium E1039]
Length = 183
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 37 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 89
Query: 201 CYPVDTV 207
Y D +
Sbjct: 90 SYQNDQL 96
>gi|257898827|ref|ZP_05678480.1| peptidase S24 [Enterococcus faecium Com15]
gi|293570270|ref|ZP_06681339.1| signal peptidase I [Enterococcus faecium E980]
gi|257836739|gb|EEV61813.1| peptidase S24 [Enterococcus faecium Com15]
gi|291609677|gb|EFF38938.1| signal peptidase I [Enterococcus faecium E980]
Length = 183
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 37 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 89
Query: 201 CYPVDTV 207
Y D +
Sbjct: 90 SYQNDQL 96
>gi|257896190|ref|ZP_05675843.1| peptidase S24 [Enterococcus faecium Com12]
gi|293377191|ref|ZP_06623399.1| signal peptidase I [Enterococcus faecium PC4.1]
gi|257832755|gb|EEV59176.1| peptidase S24 [Enterococcus faecium Com12]
gi|292644211|gb|EFF62313.1| signal peptidase I [Enterococcus faecium PC4.1]
Length = 183
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 37 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 89
Query: 201 CYPVDTV 207
Y D +
Sbjct: 90 SYQNDQL 96
>gi|257887696|ref|ZP_05667349.1| peptidase S24 [Enterococcus faecium 1,141,733]
gi|257823750|gb|EEV50682.1| peptidase S24 [Enterococcus faecium 1,141,733]
Length = 183
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 37 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 89
Query: 201 CYPVDTV 207
Y D +
Sbjct: 90 SYQNDQL 96
>gi|257878016|ref|ZP_05657669.1| peptidase S24 [Enterococcus faecium 1,230,933]
gi|257881198|ref|ZP_05660851.1| peptidase S24 [Enterococcus faecium 1,231,502]
gi|257884861|ref|ZP_05664514.1| peptidase S24 [Enterococcus faecium 1,231,501]
gi|257889785|ref|ZP_05669438.1| peptidase S24 [Enterococcus faecium 1,231,410]
gi|257892278|ref|ZP_05671931.1| peptidase S24 [Enterococcus faecium 1,231,408]
gi|258616495|ref|ZP_05714265.1| signal peptidase I [Enterococcus faecium DO]
gi|260559066|ref|ZP_05831252.1| peptidase S24 [Enterococcus faecium C68]
gi|261207600|ref|ZP_05922285.1| peptidase S24 [Enterococcus faecium TC 6]
gi|289565112|ref|ZP_06445565.1| signal peptidase I [Enterococcus faecium D344SRF]
gi|293563417|ref|ZP_06677866.1| signal peptidase I [Enterococcus faecium E1162]
gi|293568075|ref|ZP_06679413.1| signal peptidase I [Enterococcus faecium E1071]
gi|294614826|ref|ZP_06694721.1| signal peptidase I [Enterococcus faecium E1636]
gi|294617505|ref|ZP_06697136.1| signal peptidase I [Enterococcus faecium E1679]
gi|294622298|ref|ZP_06701341.1| signal peptidase I [Enterococcus faecium U0317]
gi|257812244|gb|EEV41002.1| peptidase S24 [Enterococcus faecium 1,230,933]
gi|257816856|gb|EEV44184.1| peptidase S24 [Enterococcus faecium 1,231,502]
gi|257820699|gb|EEV47847.1| peptidase S24 [Enterococcus faecium 1,231,501]
gi|257826145|gb|EEV52771.1| peptidase S24 [Enterococcus faecium 1,231,410]
gi|257828657|gb|EEV55264.1| peptidase S24 [Enterococcus faecium 1,231,408]
gi|260074823|gb|EEW63139.1| peptidase S24 [Enterococcus faecium C68]
gi|260077983|gb|EEW65689.1| peptidase S24 [Enterococcus faecium TC 6]
gi|289163119|gb|EFD10966.1| signal peptidase I [Enterococcus faecium D344SRF]
gi|291589296|gb|EFF21106.1| signal peptidase I [Enterococcus faecium E1071]
gi|291592288|gb|EFF23902.1| signal peptidase I [Enterococcus faecium E1636]
gi|291596245|gb|EFF27507.1| signal peptidase I [Enterococcus faecium E1679]
gi|291598190|gb|EFF29288.1| signal peptidase I [Enterococcus faecium U0317]
gi|291604678|gb|EFF34163.1| signal peptidase I [Enterococcus faecium E1162]
Length = 183
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 37 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 89
Query: 201 CYPVDTV 207
Y D +
Sbjct: 90 SYQNDQL 96
>gi|227551187|ref|ZP_03981236.1| signal peptidase I [Enterococcus faecium TX1330]
gi|227179655|gb|EEI60627.1| signal peptidase I [Enterococcus faecium TX1330]
Length = 157
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 11 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 63
Query: 201 CYPVDTV 207
Y D +
Sbjct: 64 SYQNDQL 70
>gi|146278165|ref|YP_001168324.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
gi|145556406|gb|ABP71019.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
Length = 231
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDR---------LLIKPRTGDIVAKV 184
+ + SM P GD+L+++ + + G R + G K
Sbjct: 129 SSAVLARAAGDSMAPTIHDGDMLLIDRSRAEAPRGPRGPKDTRPAPIFAILDDGLARVKR 188
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ G ++ L+S N + + ++ + I R++W
Sbjct: 189 IELVPGGTLALLSDNPVFGPEFRQIGSVSIIGRVMW 224
>gi|69246753|ref|ZP_00604101.1| Peptidase S24, S26A and S26B [Enterococcus faecium DO]
gi|314938028|ref|ZP_07845338.1| signal peptidase I [Enterococcus faecium TX0133a04]
gi|314941986|ref|ZP_07848847.1| signal peptidase I [Enterococcus faecium TX0133C]
gi|314948761|ref|ZP_07852133.1| signal peptidase I [Enterococcus faecium TX0082]
gi|314951779|ref|ZP_07854818.1| signal peptidase I [Enterococcus faecium TX0133A]
gi|314991814|ref|ZP_07857272.1| signal peptidase I [Enterococcus faecium TX0133B]
gi|314995855|ref|ZP_07860942.1| signal peptidase I [Enterococcus faecium TX0133a01]
gi|68195107|gb|EAN09567.1| Peptidase S24, S26A and S26B [Enterococcus faecium DO]
gi|313589959|gb|EFR68804.1| signal peptidase I [Enterococcus faecium TX0133a01]
gi|313593625|gb|EFR72470.1| signal peptidase I [Enterococcus faecium TX0133B]
gi|313596058|gb|EFR74903.1| signal peptidase I [Enterococcus faecium TX0133A]
gi|313599238|gb|EFR78083.1| signal peptidase I [Enterococcus faecium TX0133C]
gi|313642603|gb|EFS07183.1| signal peptidase I [Enterococcus faecium TX0133a04]
gi|313644827|gb|EFS09407.1| signal peptidase I [Enterococcus faecium TX0082]
Length = 157
Score = 39.2 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
+ SM + ++GD++++ ++ D ++ + G I K R I L N
Sbjct: 11 PVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIK-------RVIGLPGENV 63
Query: 201 CYPVDTV 207
Y D +
Sbjct: 64 SYQNDQL 70
>gi|326318306|ref|YP_004235978.1| putative phage repressor [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323375142|gb|ADX47411.1| putative phage repressor [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 227
Score = 39.2 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + GD+L++++ ++ D + + + K + R + ++ S N
Sbjct: 142 GDSMEPTFLDGDVLLVDAGVRTVEVDGVYVLGAQNRLFIKRVRQRLDGAYEISSDNPT-- 199
Query: 204 VDTVEMSD----IEWIARILW 220
V TV++ D +E + +++W
Sbjct: 200 VKTVDVLDGKHTVEILGKVIW 220
>gi|152973532|ref|YP_001338583.1| umuDC operon protein-like protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|330001990|ref|ZP_08304141.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
gi|150958324|gb|ABR80353.1| umuDC operon protein-like protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328537509|gb|EGF63739.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
Length = 141
Score = 39.2 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP--LYRKGDILILNSAI 163
FP+ + + + + SM LY GD+L+++ A
Sbjct: 23 PAGFPSPAS-DYTE--SELDLNEYCIHRRHSTYFVRAIGNSMTDIGLY-SGDLLVVDKAE 78
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
Q GD ++I G+ K L+ R L ++N +P
Sbjct: 79 QPRHGD-IVIAEIEGEFTVKRLL-LTPRPA-LQAMNPDFP 115
>gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4]
gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4]
Length = 216
Score = 39.2 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 106 SGVFPTGNKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
FP K + + + G YAI T M P R GD++I NS +
Sbjct: 103 PQGFPDSLKEEDICDYVSLPNGPQGCYAI-------ITYGDFMAPTIRDGDLVIFNSGGE 155
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
++ + +L+ R + + + G I N Y
Sbjct: 156 LSNKNIVLVNNRWNEAILRR-YRVAGNEIFFSPDNPAYAP 194
>gi|15988315|pdb|1JHC|A Chain A, Lexa S119a C-Terminal Tryptic Fragment
Length = 137
Score = 39.2 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + +M + GD+L ++ V G ++++ ++ K L + +
Sbjct: 40 PNADFLLRVSGMAMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 97
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 98 VELLPENSEFKPIVVDLRQ 116
>gi|261365316|ref|ZP_05978199.1| putative repressor protein [Neisseria mucosa ATCC 25996]
gi|288566246|gb|EFC87806.1| putative repressor protein [Neisseria mucosa ATCC 25996]
Length = 230
Score = 39.2 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N A +++ +++ K L G ++++S N
Sbjct: 142 ISVKGDSMEGVLNDGDTILINHAETAPKDGLYVLRLNE-NLLVKRLQLVPGGVVNVISAN 200
Query: 200 CCYPVDTVE----MSDIEWIARILW 220
YP ++ D+ I R+ W
Sbjct: 201 EAYPTFEIDLNNLTDDVAIIGRVEW 225
>gi|237737791|ref|ZP_04568272.1| repressor [Fusobacterium mortiferum ATCC 9817]
gi|229419671|gb|EEO34718.1| repressor [Fusobacterium mortiferum ATCC 9817]
Length = 229
Score = 39.2 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 17/133 (12%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+PL +G G D P + + +P I++ ++AI + SM P
Sbjct: 108 VPLFSRISAGIGVITDEE--PI----DYISLPGIKN-TENVFAIN-------VKGDSMEP 153
Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PVDTVE 208
+ I+I ++ G + G+ K + L+S N Y P+
Sbjct: 154 TIKNQSIIICRQGSELRDG-EVGAFLVNGESFVKRI-KVTKNFFALLSDNPNYQPIYVYP 211
Query: 209 MSDIEWIARILWA 221
+ + I ++L
Sbjct: 212 QDEFKVIGKVLKV 224
>gi|221199496|ref|ZP_03572540.1| prophage transcriptional regulator [Burkholderia multivorans CGD2M]
gi|221180781|gb|EEE13184.1| prophage transcriptional regulator [Burkholderia multivorans CGD2M]
Length = 255
Score = 39.2 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201
SM P GD L++N ++ + ++ K L ++ ++S N
Sbjct: 168 DGMSMAPRIEDGDSLVVNYKEHTIASGKVYVFTFAYELFIKRLYRGT-DAVRVVSDNPDK 226
Query: 202 --YPVDTVEMS---DIEWIARILWAS 222
YP + D+ IAR++ S
Sbjct: 227 SRYPDWQIPAERLNDLTVIARVVAVS 252
>gi|149003565|ref|ZP_01828430.1| phage transcriptional repressor [Streptococcus pneumoniae
SP14-BS69]
gi|147758297|gb|EDK65297.1| phage transcriptional repressor [Streptococcus pneumoniae
SP14-BS69]
Length = 263
Score = 39.2 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G+G + + + + +P D + SM P Y GD
Sbjct: 151 ASAGTGQYLNDV------RVERIELPVDVD----------ADFVIPIKGDSMEPDYHDGD 194
Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
++ + V+ D ++ + GD K L+ ++ L SLN Y
Sbjct: 195 LVFIQ--TSVDLNDGVIGVFNYNGDAYIKQLVIDEDQAY-LHSLNPEYKD 241
>gi|256851276|ref|ZP_05556665.1| LexA repressor [Lactobacillus jensenii 27-2-CHN]
gi|260660700|ref|ZP_05861615.1| LexA repressor [Lactobacillus jensenii 115-3-CHN]
gi|282931496|ref|ZP_06336999.1| repressor LexA [Lactobacillus jensenii 208-1]
gi|297206143|ref|ZP_06923538.1| repressor lexA [Lactobacillus jensenii JV-V16]
gi|256616338|gb|EEU21526.1| LexA repressor [Lactobacillus jensenii 27-2-CHN]
gi|260548422|gb|EEX24397.1| LexA repressor [Lactobacillus jensenii 115-3-CHN]
gi|281304369|gb|EFA96468.1| repressor LexA [Lactobacillus jensenii 208-1]
gi|297149269|gb|EFH29567.1| repressor lexA [Lactobacillus jensenii JV-V16]
Length = 211
Score = 39.2 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 27/157 (17%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGN 113
S + L T E + L G IP L +G D
Sbjct: 61 PSKPRALEITQEGLN---ALGVDPG---------IPYLGTVAAGDPDTALADDSG----- 103
Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
V PE + +Y ++ + +Y D++I+ GD ++
Sbjct: 104 AEYYVQRPERFDKRDPLYMLKVDGMSMIERG-----IYPD-DLVIVRHQNVAAQGDLVVA 157
Query: 174 KPRTGDIVAKVLIS-RRGRSIDLMSLNCC-YPVDTVE 208
K L+ R + + L + N YP + +
Sbjct: 158 YTENNGTTLKELVRDRSSKQLRLKAYNKEMYPDELLP 194
>gi|152984099|ref|YP_001347524.1| LexA repressor [Pseudomonas aeruginosa PA7]
gi|166224640|sp|A6V389|LEXA_PSEA7 RecName: Full=LexA repressor
gi|150959257|gb|ABR81282.1| LexA repressor [Pseudomonas aeruginosa PA7]
Length = 204
Score = 39.2 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 14/141 (9%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-------NGIYAIQT 135
T + I + F P + D P G P + + N +
Sbjct: 59 TPGASRGIRIPGFEPHAAN---DDEGLPV-IGRVAAGAPILAEQNIEESCRINPAFFNPR 114
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D + + SM + GD+L ++ + G ++ + ++ K + +
Sbjct: 115 ADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARLGE-EVTVKRFKREGSK-VW 172
Query: 195 LMSLNCCYPVDTVEMSDIEWI 215
L++ N + V++ + E I
Sbjct: 173 LLAENPEFAPIEVDLKEQELI 193
>gi|227510233|ref|ZP_03940282.1| LexA repressor [Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227513162|ref|ZP_03943211.1| LexA repressor [Lactobacillus buchneri ATCC 11577]
gi|227524377|ref|ZP_03954426.1| LexA repressor [Lactobacillus hilgardii ATCC 8290]
gi|227083543|gb|EEI18855.1| LexA repressor [Lactobacillus buchneri ATCC 11577]
gi|227088608|gb|EEI23920.1| LexA repressor [Lactobacillus hilgardii ATCC 8290]
gi|227189885|gb|EEI69952.1| LexA repressor [Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 209
Score = 39.2 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
S + L T + +LL + K+K+IP+L +G + +
Sbjct: 61 PSKPRALEVTAAGM-ELLGI--------APKQKQIPILGTVTAG------EPILAVEDAT 105
Query: 116 NTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ +P ++ ++ +Q + GD +++ + GD ++
Sbjct: 106 DYFPLPPQLAQDDQTLFMLQIRGESMINAG------ILNGDYVVVRKQAYADNGDIVIAM 159
Query: 175 PRTGDIVAK 183
+ K
Sbjct: 160 TDENEATCK 168
>gi|46190225|ref|ZP_00206374.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Bifidobacterium longum DJO10A]
Length = 119
Score = 38.8 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
A + + SM+ GD+LI++ ++ GD ++ +I K L+SR G
Sbjct: 2 AHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSRAG 60
Query: 191 RSIDLMSLNCCYPV 204
+I L + N YP
Sbjct: 61 ITI-LHAENPRYPD 73
>gi|124515759|gb|EAY57268.1| LexA repressor [Leptospirillum rubarum]
gi|206602264|gb|EDZ38746.1| LexA repressor [Leptospirillum sp. Group II '5-way CG']
Length = 205
Score = 38.8 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 134 QTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + SM GD ++++S GD +++ G+ K L + R
Sbjct: 112 EGPSFFLRVRGDSMKDAAILDGDYVLVSSRPDAKPGD-IVVAMIDGESTVKRLSRKGDRL 170
Query: 193 IDLMSLNCCYPVDTVEMS 210
+ L N YP +
Sbjct: 171 V-LSPENSAYPDIPIPTD 187
>gi|75676032|ref|YP_318453.1| LexA repressor [Nitrobacter winogradskyi Nb-255]
gi|123745685|sp|Q3SRJ0|LEXA_NITWN RecName: Full=LexA repressor
gi|74420902|gb|ABA05101.1| SOS-response transcriptional repressor, LexA [Nitrobacter
winogradskyi Nb-255]
Length = 233
Score = 38.8 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
T+ +P YA++ + SM+ GD+ ++ + GD ++
Sbjct: 132 TISLPPDMLGAGEHYALE-------VRGDSMVDAGILDGDMALIQRNPTADTGDIVVALI 184
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K R SI L N Y V + + ++ R++
Sbjct: 185 DDEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVQIQGRLV 227
>gi|313123853|ref|YP_004034112.1| signal peptidase i [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280416|gb|ADQ61135.1| Signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 189
Score = 38.8 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSID 194
SM P + GD LI D ++IK G + K LI G ++
Sbjct: 42 ANEVVSGPSMQPTFEDGDRLIAVRHFTPKRNDVVIIKAPNQPGAMYIKRLIGLPGDTVQ 100
>gi|221369865|ref|YP_002520961.1| hypothetical protein RSKD131_4028 [Rhodobacter sphaeroides KD131]
gi|221162917|gb|ACM03888.1| Hypothetical Protein RSKD131_4028 [Rhodobacter sphaeroides KD131]
Length = 222
Score = 38.8 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 25/177 (14%)
Query: 56 ESIFKILAA------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGV 108
ES K+ A T+ +++ + + I + +G+ D+
Sbjct: 45 ESSPKVANAYALARELGRTVDEIIQIGMTGDLNARPAHAPIAVAGCVGAGARVDLLDA-- 102
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----Q 164
+ G+ V P PH GI A++ + SM+PLYR G +L A
Sbjct: 103 YEKGDGMYHVARPPQLKPH-GIVAVE-------VKGESMMPLYRPGSVLFYTRAAAEGVP 154
Query: 165 VNC-GDRLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
V + + G KV+ + L+SLN D + ++W A +L
Sbjct: 155 VEALNTPCVCEDADGRAWLKVVKVGSQEGTFSLLSLNPD--ADNMHGVRLKWAAPVL 209
>gi|104774122|ref|YP_619102.1| signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116514198|ref|YP_813104.1| Signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|103423203|emb|CAI98017.1| signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116093513|gb|ABJ58666.1| Signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|325125888|gb|ADY85218.1| Signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 188
Score = 38.8 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSID 194
SM P + GD LI D ++IK G + K LI G ++
Sbjct: 41 ANEVVSGPSMQPTFEDGDRLIAVRHFTPKRNDVVIIKAPNQPGAMYIKRLIGLPGDTVQ 99
>gi|309802478|ref|ZP_07696584.1| repressor LexA [Bifidobacterium dentium JCVIHMP022]
gi|308220878|gb|EFO77184.1| repressor LexA [Bifidobacterium dentium JCVIHMP022]
Length = 237
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 25/155 (16%)
Query: 64 ATNETICQLLDLPFS-DGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNKWNTV 118
A+ + +++ P D + ++PL+ +G + D + +
Sbjct: 91 ASGNGVAEVIPFPTGVDSSESIMGSHDVPLVGRIAAGVPITAEQHID----------DVM 140
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+PE + ++ ++ SM GD +++ GD ++
Sbjct: 141 RLPERLTGTGNLFMLE-------VHGDSMIDAAICDGDFVVVREQHTAENGD-IVAALLD 192
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K + + L+ N Y ++I
Sbjct: 193 DEATVKTF-RKDHGHVWLIPHNPAYSPIDGTHAEI 226
>gi|305663581|ref|YP_003859869.1| putative phage repressor [Ignisphaera aggregans DSM 17230]
gi|304378150|gb|ADM27989.1| putative phage repressor [Ignisphaera aggregans DSM 17230]
Length = 168
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
Y I Q T SM PL GDI+I+ + GD ++ K ++V
Sbjct: 28 YYIFGQVTLAVVNGRSMYPLLHNGDIVIILPFKDIKLGDVIIFKNDADELVI 79
>gi|170748438|ref|YP_001754698.1| LexA repressor [Methylobacterium radiotolerans JCM 2831]
gi|229621225|sp|B1LUJ7|LEXA_METRJ RecName: Full=LexA repressor
gi|170654960|gb|ACB24015.1| transcriptional repressor, LexA family [Methylobacterium
radiotolerans JCM 2831]
Length = 242
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + + + SM GD++++ N GD ++ + K L R
Sbjct: 148 FVAGGEHYALEVRGDSMVEAGILDGDLVVIRKQDTANTGDIIVALIDDEEATLKRLRRR- 206
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G SI L + N Y + + R++
Sbjct: 207 GSSIALEAANPAYETRVLGPDRVRIQGRLV 236
>gi|57237571|ref|YP_178585.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
gi|57166375|gb|AAW35154.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
Length = 244
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLISR 188
I+ K SM P+ GD +I++ + ++ D ++ + D+ K +
Sbjct: 135 IKKSYDIIKINGDSMEPILSNGDFIIVDRSKNSLQTISNADIVIFRKND-DLFCKKIKKE 193
Query: 189 RGRS-IDLMSLNCCYPVDTVEMSDIE 213
I L+S N Y V+ S+ E
Sbjct: 194 PFEDYIFLVSENKKYEDKKVDNSEFE 219
>gi|293395287|ref|ZP_06639572.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422244|gb|EFE95488.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 248
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 140 HKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ +SM P + GD++ I ++ G I+ + K+LI + + + SL
Sbjct: 158 IRISGSSMEPRLQDGDVVGINTDDTRIREGKTYAIR-HGNLLRVKILIEQPDGGVIIRSL 216
Query: 199 NC-CYPVDTVE----MSDIEWIARILWAS 222
N Y + + + + R+ W+S
Sbjct: 217 NREEYQDEQLSYQQRKEQLIVLGRVFWSS 245
>gi|71907568|ref|YP_285155.1| LexA repressor [Dechloromonas aromatica RCB]
gi|123733237|sp|Q47EP6|LEXA_DECAR RecName: Full=LexA repressor
gi|71847189|gb|AAZ46685.1| SOS-response transcriptional repressor, LexA [Dechloromonas
aromatica RCB]
Length = 201
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 128 NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
G YA+ D K + SM+ + GD+L ++ Q G ++ + ++
Sbjct: 92 QGRYALDASLFAPKADFLLKVRGLSMIDVGIFDGDLLAVHKTNQARDGQIVVARL-DEEV 150
Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
K L R G I L++ N + V+ ++
Sbjct: 151 TVKRL-ERSGGQIRLIAENPDFEPIIVDPEAVD 182
>gi|33862908|ref|NP_894468.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
MIT 9313]
gi|33634824|emb|CAE20810.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
MIT 9313]
Length = 164
Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + + + + + + SM + GD+L+++ ++
Sbjct: 33 AAGFPS-PAEDYIEI--GIDLNEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLD 89
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
G +++ G K L+ RG + L + + YP +
Sbjct: 90 ARPG-HIVVAILDGAFTLKQLVRHRG-VLRLEAAHSNYPPLDLA 131
>gi|322376771|ref|ZP_08051264.1| toxin-antitoxin system, antitoxin component, Xre family
[Streptococcus sp. M334]
gi|321282578|gb|EFX59585.1| toxin-antitoxin system, antitoxin component, Xre family
[Streptococcus sp. M334]
Length = 249
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G+G + + + + +P D + SM P Y GD
Sbjct: 137 ASAGTGQYLNDV------RVERIELPVDID----------ADFVIPIKGDSMEPDYHDGD 180
Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
++ + +++ +N G ++ + GD K L+ + ++ L SLN Y
Sbjct: 181 LVFIQTSVDLNNG--VIGVFNYNGDAYIKQLVIDKDQAY-LHSLNPAYKD 227
>gi|220926324|ref|YP_002501626.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
gi|219950931|gb|ACL61323.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
Length = 245
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 22/154 (14%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
L F D E ++ G +G +A+
Sbjct: 91 GLLFGDDEAAEPPGDGAQVVGV-----RGVISAGGL-IATGDEQPDPSGNLFEVTVPFAL 144
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNC--GDRLLIKPRTGDIVAKVLISRRG 190
+ SM P Y DI++ + G + G+ K ++
Sbjct: 145 PPGTIAFRVAGGSMHPKYEPDDIVLCAQAGESPERLVGCYAAVATADGNRFLKKILRGSR 204
Query: 191 R-SIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
R + L S N P R++WAS
Sbjct: 205 RGTYHLESHNAPLMPDR-----------RLVWAS 227
>gi|315453658|ref|YP_004073928.1| hypothetical protein HFELIS_12540 [Helicobacter felis ATCC 49179]
gi|315132710|emb|CBY83338.1| putative uncharacterized protein [Helicobacter felis ATCC 49179]
Length = 206
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL ++GD+L+ + G + + G+ K + R + L+S N Y
Sbjct: 125 GNSMEPLIKEGDLLLFQNDGSCYEG-AVYVIDLGGEYYVKRISKRP--EVSLISDNPAYK 181
Query: 204 VDTVE-MSDIEWIARIL 219
++ + +I + R++
Sbjct: 182 PIILQSLEEIIILGRVV 198
>gi|310658539|ref|YP_003936260.1| lexa [Clostridium sticklandii DSM 519]
gi|308825317|emb|CBH21355.1| LexA [Clostridium sticklandii]
Length = 208
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
L + + +IPLL +G+ + N + +P + + +
Sbjct: 71 LSDDEEGFYRRSSVDIPLLGVVTAGA------PILAVENIEEFLPIPSSWVNNGTYFML- 123
Query: 135 TQDTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
K + SM +Y D +I+ GD ++ + K + R
Sbjct: 124 ------KVKGDSMINAGIY-DKDTIIVEKTEYAKNGDIVVALINDDETTVKRFFKEKNR- 175
Query: 193 IDLMSLNCCYPV 204
I L N Y
Sbjct: 176 IRLQPENEAYSP 187
>gi|206580872|ref|YP_002241016.1| LexA repressor [Klebsiella pneumoniae 342]
gi|288937661|ref|YP_003441720.1| transcriptional repressor, LexA family [Klebsiella variicola At-22]
gi|290512400|ref|ZP_06551767.1| LexA repressor [Klebsiella sp. 1_1_55]
gi|226694235|sp|B5XXY9|LEXA_KLEP3 RecName: Full=LexA repressor
gi|206569930|gb|ACI11706.1| LexA repressor [Klebsiella pneumoniae 342]
gi|288892370|gb|ADC60688.1| transcriptional repressor, LexA family [Klebsiella variicola At-22]
gi|289775395|gb|EFD83396.1| LexA repressor [Klebsiella sp. 1_1_55]
Length = 202
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNV 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFTPIVVDLRQ 183
>gi|159479056|ref|XP_001697614.1| signal peptidase, catalytic subunit [Chlamydomonas reinhardtii]
gi|158274224|gb|EDP00008.1| signal peptidase, catalytic subunit [Chlamydomonas reinhardtii]
Length = 203
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 15/134 (11%)
Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
G G D W + + + + ++ SM P + +GDI
Sbjct: 25 QLGEFGRTDKRGRGLRPGW-LIVTSALMIWKSLMLVTGSESPVVVVLSGSMEPGFYRGDI 83
Query: 157 LILNSA-IQVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSL--------NCCY 202
L LN + G+ ++ DI V KV R G ID+++ N
Sbjct: 84 LFLNMGKAPIRTGEVVVFNLDGRDIPIVHRVIKVHERRNGTHIDVLTKVRSDWRGDNNFG 143
Query: 203 PVDTVEMSDIEWIA 216
+ +W+
Sbjct: 144 DDRALYNKGQDWLH 157
>gi|145641694|ref|ZP_01797270.1| hypothetical protein CGSHiR3021_02044 [Haemophilus influenzae
R3021]
gi|145273508|gb|EDK13378.1| hypothetical protein CGSHiR3021_02044 [Haemophilus influenzae
22.4-21]
Length = 85
Score = 38.8 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA---KVLISRRGRSI---DLMSLNC 200
MLP + +GD+++++ I G + + K L R I +L+ LN
Sbjct: 1 MLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYKELGIRTPEGIPHFELVPLNP 60
Query: 201 CYPVDTVEMSDIEWIARIL 219
+P + +I RI+
Sbjct: 61 MFPTLSSLDQEI----RII 75
>gi|229588706|ref|YP_002870825.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
gi|229360572|emb|CAY47429.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
Length = 244
Score = 38.8 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 28/219 (12%)
Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
+ +R ++P+ L R+ G+ ++ ++ + G+ PS + I +I + QL
Sbjct: 13 LLDRDRISPTELHRRTGVPQSTLSR----ILSGKIVDPSDKHISRIAEYFRVSTDQLRGR 68
Query: 76 P-FSDGRTTEKKEKEIPLLYFPPSGSGG----------FFDSGVFPTGNKWNTVGVPEIR 124
R + L F G+ + E
Sbjct: 69 AAVGALRDDGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEEREKA 128
Query: 125 SPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIK 174
S G +++ + + SMLP+ R G + +N+ + GD L
Sbjct: 129 SLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSGIGDIVDGD-LYAI 187
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI 212
G + K L I L S N +P + DI
Sbjct: 188 NHNGQLRVKQLYRL-PSGIRLRSFNRDEHPDEDYSFQDI 225
>gi|124023302|ref|YP_001017609.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT
9303]
gi|123963588|gb|ABM78344.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
MIT 9303]
Length = 158
Score = 38.8 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
+ FP+ + + + + + + SM + GD+L+++ ++
Sbjct: 27 AAGFPS-PAEDYIEI--GIDLNEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLD 83
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
G +++ G K L+ RG + L + + YP +
Sbjct: 84 ARPG-HIVVAILDGAFTLKQLVRHRG-VLRLEAAHSNYPPLDLAR 126
>gi|71279451|ref|YP_269397.1| umuD protein [Colwellia psychrerythraea 34H]
gi|71145191|gb|AAZ25664.1| umuD protein [Colwellia psychrerythraea 34H]
Length = 137
Score = 38.8 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
K IP+ + +G GF ++ +G+ S I + S
Sbjct: 1 MKVIPI--YAEAGISGFESPA-----AEYKELGL----SLDQLIIKHPNATFIGQASGQS 49
Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
M + GDILI++ ++ GD +++ G V K++ + R L+S + +
Sbjct: 50 MKGVGIFDGDILIVDRSLTARNGD-VIVANYNGCFVCKLIDKVQAR---LLSASADFAPV 105
Query: 206 TVEMSD 211
++ D
Sbjct: 106 SITPED 111
>gi|229824068|ref|ZP_04450137.1| hypothetical protein GCWU000282_01372 [Catonella morbi ATCC 51271]
gi|229786422|gb|EEP22536.1| hypothetical protein GCWU000282_01372 [Catonella morbi ATCC 51271]
Length = 205
Score = 38.8 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 13/124 (10%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ ++IPLL +G+ + + + +P + ++ + +
Sbjct: 79 QPQQIPLLGQVAAGA------PILAIEHATDYYPIPPGLERYE-----PSELFMLEIKGE 127
Query: 146 SMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
SM+ + GD + + N GD ++ + K + I L N
Sbjct: 128 SMVNIGILDGDYITVRRQASANNGDVVVAMTEDNEATCKTFFKKSDHVI-LRPENDHMDD 186
Query: 205 DTVE 208
+
Sbjct: 187 IILP 190
>gi|323137198|ref|ZP_08072277.1| transcriptional repressor, LexA family [Methylocystis sp. ATCC
49242]
gi|322397556|gb|EFY00079.1| transcriptional repressor, LexA family [Methylocystis sp. ATCC
49242]
Length = 237
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ +P YA++ + SM GD +++ + GD ++
Sbjct: 136 TISLPPDLLTSGEHYALE-------VRGDSMIEAGILDGDTVVIKKQDNADTGDIVVALI 188
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K L R SI L + N Y +
Sbjct: 189 DDEEATLKRLRKRGA-SIALEAANPAYETRIFGPDRV 224
>gi|299800882|gb|ADJ51146.1| SOS mutagenesis and repair protein D [Klebsiella pneumoniae]
Length = 227
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 111 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLY-NGDLLVVDSAEKP 166
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
GD +++ G+ K L+ ++ M S + YP
Sbjct: 167 RHGD-IVVASMQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 207
>gi|262042207|ref|ZP_06015379.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259040440|gb|EEW41539.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 148
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 106 SGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
FP+ + + + H + + SM + GDILI++
Sbjct: 32 PAGFPSPAGDYVEQELDLNTLCIRH------PSATYFLRASGESMRDIGLHDGDILIVDR 85
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
A GD ++ + G K L R +++ M N YP
Sbjct: 86 AETAQEGDIVIAEIDRG-FTVKRLRLRPRPALEPM--NPDYP 124
>gi|212704955|ref|ZP_03313083.1| hypothetical protein DESPIG_03022 [Desulfovibrio piger ATCC 29098]
gi|212671619|gb|EEB32102.1| hypothetical protein DESPIG_03022 [Desulfovibrio piger ATCC 29098]
Length = 229
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
+ D P + V +P+ ++ + + +M PL R+G + ++
Sbjct: 111 YTDEAPRPALSISGRVPLPQAF--------LRPSLQVLRLRGQAMEPLLREGAYIGVDME 162
Query: 163 --IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
V+ L P G +V +V + R L + + YP +++ + ++ + R+
Sbjct: 163 DLAPVSGRTYALFAPLEGVVVRQVFLDGSQRGYVLRAQSPDYPETSLDAALLQRRMLGRV 222
Query: 219 LWASQ 223
+W Q
Sbjct: 223 VWTFQ 227
>gi|170742219|ref|YP_001770874.1| putative phage repressor [Methylobacterium sp. 4-46]
gi|168196493|gb|ACA18440.1| putative phage repressor [Methylobacterium sp. 4-46]
Length = 227
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNC--GDRLLIKPRTGDIVAK-VLI 186
Y + ++ SMLP Y GD++++ V GD L+ K VL
Sbjct: 109 YPLPDDVAAYEVLGNSMLPKYDPGDVILVRKMAVPVEMVLGDVALVVTADWKRYLKRVLR 168
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ DL S N + V + ++ I I+
Sbjct: 169 GSTTDTYDLESFNAP-TMKDVRIREVGMIHLIV 200
>gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
25986]
gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
25986]
Length = 208
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-EIRS 125
T+ L+ + + +PLL F G F+ GN + V VP I
Sbjct: 58 TTVADLMG-EDAAEAAISGTSRMVPLLGFAHMGD---FED----EGNLADEVEVPASIAD 109
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKV 184
H + + Q M + +L+++ ++ G +L + G +V
Sbjct: 110 AHPRGFMVHA-------QGGCMDNRFPHDALLLVDPDMEPLNGQPVLAETADYGAVVRNY 162
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILW 220
R + S + Y D + R++W
Sbjct: 163 TRGRSTVMLTADSHSGEYDDILAGPGDEPVVCRGRVVW 200
>gi|182676970|ref|YP_001831117.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636600|gb|ACB97373.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 217
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGD--RLLIKPRTGDIVAKVLI 186
Y + + + P Y GD+++ A + D +K G I K +
Sbjct: 105 PYPVPEGALVFEITGDHLWPRYESGDVVVCWKPARTLQEADGWEAAVKLADGQIYLKTVR 164
Query: 187 SRRGRSIDLMSLN 199
R G DL+S N
Sbjct: 165 YREGHQADLVSHN 177
>gi|152978553|ref|YP_001344182.1| LexA repressor [Actinobacillus succinogenes 130Z]
gi|171704242|sp|A6VMQ0|LEXA_ACTSZ RecName: Full=LexA repressor
gi|150840276|gb|ABR74247.1| SOS-response transcriptional repressor, LexA [Actinobacillus
succinogenes 130Z]
Length = 210
Score = 38.8 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 37/161 (22%)
Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
ILA T+ I LLD + + +PL+ +G
Sbjct: 61 ILAGTSRGIRLLLD-------AANDEPEGLPLIGQVAAGE-------------------- 93
Query: 121 PEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
P + H G Y + D K SM + GD+L ++S V G +++
Sbjct: 94 PILAEQHIEGTYRVDPDMFKPQADFLLKVNGQSMKNIGILDGDLLAVHSTKDVRNG-QVI 152
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+ ++ K L + G I L + N + V + + E
Sbjct: 153 VARIEDEVTVKRLERK-GDVIYLHAENEEFAPIVVNLREQE 192
>gi|308186721|ref|YP_003930852.1| UmuD protein [Pantoea vagans C9-1]
gi|308057231|gb|ADO09403.1| UmuD protein [Pantoea vagans C9-1]
Length = 139
Score = 38.8 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM GD+L+++S++ + GD +++ G+ K L
Sbjct: 48 PSATYFVRVSGESMIEAGINDGDMLVVDSSLTASHGD-IVVAAVDGEFTVKRLQLHPC-- 104
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ LM +N + ++ D
Sbjct: 105 LQLMPMNTKFKPIAIQTED 123
>gi|304397691|ref|ZP_07379568.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB]
gi|304354863|gb|EFM19233.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB]
Length = 139
Score = 38.8 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM GD+L+++S++ + GD +++ G+ K L
Sbjct: 48 PSATYFVRVSGESMIEAGINDGDMLVVDSSLTASHGD-IVVAAVDGEFTVKRLQLHPC-- 104
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ LM +N + ++ D
Sbjct: 105 LQLMPMNTKFKPIAIQTED 123
>gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075]
gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075]
Length = 252
Score = 38.8 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 139 RHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRL-LIKPRTGDIVAKVLISRRGRSI-D 194
+ SM P G I+I++ G+ + ++ GD + K L + + +
Sbjct: 159 ALRVWGDSMEPTIPDGSIVIVDLDQREPDGRGEHVWALRTEDGDTIIKRL-RQTPQGVWV 217
Query: 195 LMSLNCCYPVDTVEMSDIEW--------IARILW 220
++S N + I W I R++W
Sbjct: 218 IISDNSMSYGPS-----IVWTGDFHRLVIGRVIW 246
>gi|254427731|ref|ZP_05041438.1| Peptidase S24-like domain protein [Alcanivorax sp. DG881]
gi|196193900|gb|EDX88859.1| Peptidase S24-like domain protein [Alcanivorax sp. DG881]
Length = 130
Score = 38.8 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GDILI++ +++ GD +++ G+ K L + +
Sbjct: 37 PASTFLLRVEGDSMVDAGIFSGDILIVDRSLEAVAGD-VVVASLDGEFTVKELQLQP--T 93
Query: 193 IDLMSLNCCYPV 204
L N Y
Sbjct: 94 PMLKPRNPAYAP 105
>gi|322834782|ref|YP_004214809.1| LexA family transcriptional regulator [Rahnella sp. Y9602]
gi|321169983|gb|ADW75682.1| transcriptional repressor, LexA family [Rahnella sp. Y9602]
Length = 202
Score = 38.8 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVSGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GSV 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENSEFQPIVVDLRE 183
>gi|295836548|ref|ZP_06823481.1| signal peptidase [Streptomyces sp. SPB74]
gi|295826090|gb|EDY44256.2| signal peptidase [Streptomyces sp. SPB74]
Length = 187
Score = 38.8 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ + SMLP R GD L++ +V GD ++++
Sbjct: 21 EVRGPSMLPTLRHGDRLLVRYGARVRPGDVVVLR 54
>gi|315039209|ref|YP_004032777.1| signal peptidase I [Lactobacillus amylovorus GRL 1112]
gi|325957683|ref|YP_004293095.1| signal peptidase I [Lactobacillus acidophilus 30SC]
gi|312277342|gb|ADQ59982.1| signal peptidase I [Lactobacillus amylovorus GRL 1112]
gi|325334248|gb|ADZ08156.1| signal peptidase I [Lactobacillus acidophilus 30SC]
gi|327184330|gb|AEA32777.1| signal peptidase I [Lactobacillus amylovorus GRL 1118]
Length = 210
Score = 38.8 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P + G LI + G+ +++K G + K +I G I
Sbjct: 41 TVSGPSMEPSFENGQRLISVRHAAIKRGEVVIVKAPDEPGALYIKRVIGLPGEKI 95
>gi|298368482|ref|ZP_06979800.1| hypothetical protein HMPREF9016_00147 [Neisseria sp. oral taxon 014
str. F0314]
gi|298282485|gb|EFI23972.1| hypothetical protein HMPREF9016_00147 [Neisseria sp. oral taxon 014
str. F0314]
Length = 234
Score = 38.8 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N A D L + + K + G+ + + S N
Sbjct: 146 IAVKGDSMEGVLNHGDNILVNHAETTPR-DGLYVIRIDNQLFVKQIQKLPGKLL-VKSAN 203
Query: 200 CCYPVDTVEMSD----IEWIARILW 220
Y ++++D + I R+ W
Sbjct: 204 PVYEPFEIDLTDDNQNVAIIGRVEW 228
>gi|254448052|ref|ZP_05061516.1| LexA repressor [gamma proteobacterium HTCC5015]
gi|198262478|gb|EDY86759.1| LexA repressor [gamma proteobacterium HTCC5015]
Length = 196
Score = 38.8 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD +++ SA GD ++ D K + R G +
Sbjct: 105 SNRYALQVKGDSMVEAGICDGDWVVIESAQTARNGDIVVALVDDEDATLKTIDYRAGGQV 164
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L+ N +
Sbjct: 165 ALIPSNSAMEAMVYPEERV 183
>gi|33341104|gb|AAQ15118.1| LexA [Paracoccus denitrificans]
Length = 233
Score = 38.8 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q + + + SM GD++++ GD ++ + K R+G
Sbjct: 142 QDRHYALEVRGDSMIEAGINDGDVVVIREQNAAESGDIVVALVDGYEATLKR-YRRKGNM 200
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L + N Y + + R++
Sbjct: 201 IALEAANPAYETRVLPEDKVRIQGRLV 227
>gi|26989835|ref|NP_745260.1| LexA repressor [Pseudomonas putida KT2440]
gi|29427652|sp|P59479|LEXA2_PSEPK RecName: Full=LexA repressor 2
gi|24984739|gb|AAN68724.1|AE016504_7 LexA repressor [Pseudomonas putida KT2440]
Length = 202
Score = 38.8 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ EIP+L +G+ P G +G+ E ++ +T D
Sbjct: 69 AEPLRRPEILEIPVLGQVAAGA---------PIGP---DLGIHEQLLLDPSLFR-RTPDY 115
Query: 139 RHKTQDTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
K + SM+ ++ GD++ + G ++ + G++ K L + G + L+
Sbjct: 116 LLKVRGDSMIDDGIF-DGDLVGILQQADARDGQIVVARL-DGEVTIKRLQRQ-GGTYRLL 172
Query: 197 SLNCCYPVDTVEMSD 211
N Y V+
Sbjct: 173 PRNPAYAPIDVQPEQ 187
>gi|212711234|ref|ZP_03319362.1| hypothetical protein PROVALCAL_02306 [Providencia alcalifaciens DSM
30120]
gi|212686129|gb|EEB45657.1| hypothetical protein PROVALCAL_02306 [Providencia alcalifaciens DSM
30120]
Length = 137
Score = 38.8 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 103 FFD--SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
F D + FP+ + + E + ++ + + + SM+ GD++I+
Sbjct: 17 FLDRVAAGFPSPAA-DYME--ERINLNSTLIKHPDSTYMLRVEGNSMIDANINDGDVVIV 73
Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
+SA+ GD ++I G+ K L S L+ +N + +
Sbjct: 74 DSALVAKDGD-IVIASVDGEFTVKRLKSYPPM---LIPMNPDFQPIHI 117
>gi|329737802|gb|EGG74038.1| peptidase S24-like protein [Staphylococcus epidermidis VCU028]
Length = 203
Score = 38.8 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
S P ++ N V + + ++ + SM ++++ D++++ V
Sbjct: 85 SAGLPIYSEENLVDYIYFATKNLNS---DKEEFGLRVSGDSMDKIFQENDVVVVEKDSIV 141
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDL-MSLNCCY-PVDTVEMSDIEWIARILWASQ 223
G ++ + K + + + I + S N + P E +++ I R++ ASQ
Sbjct: 142 ENGQLGVVMVNGYNATVKRVRYNKNQIILIPESNNPEHLPQVYGEDDEVKIIGRVV-ASQ 200
>gi|306825469|ref|ZP_07458809.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304432407|gb|EFM35383.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 257
Score = 38.8 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
+G+G + + + + +P D + SM P Y GD
Sbjct: 145 ASAGTGQYLNDV------RVERIELPVDVD----------ADFVIPIKGDSMEPNYHDGD 188
Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
++ + +++ +N G ++ + GD K L+ + ++ L SLN Y +
Sbjct: 189 LVFIQTSVDLNNG--VIGVFNYNGDAYIKQLVIDKDQAY-LHSLNPVYKDMPITTE 241
>gi|258623122|ref|ZP_05718134.1| LexA repressor [Vibrio mimicus VM573]
gi|262163660|ref|ZP_06031401.1| SOS-response repressor and protease LexA [Vibrio mimicus VM223]
gi|262172856|ref|ZP_06040534.1| SOS-response repressor and protease LexA [Vibrio mimicus MB-451]
gi|258584605|gb|EEW09342.1| LexA repressor [Vibrio mimicus VM573]
gi|261893932|gb|EEY39918.1| SOS-response repressor and protease LexA [Vibrio mimicus MB-451]
gi|262027876|gb|EEY46540.1| SOS-response repressor and protease LexA [Vibrio mimicus VM223]
Length = 209
Score = 38.8 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ + E+ E +PL+ +G V P
Sbjct: 68 ILIDNAANEEEAETGLPLIGRVAAGEPIL----------AQEHVEAHYQVDPSMFR---P 114
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 115 QADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKVF 173
Query: 194 DLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 174 -LHAENEEFAPIEVDLAA 190
>gi|114563134|ref|YP_750647.1| putative prophage repressor [Shewanella frigidimarina NCIMB 400]
gi|114334427|gb|ABI71809.1| putative prophage repressor [Shewanella frigidimarina NCIMB 400]
Length = 137
Score = 38.8 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL--ISRRG 190
+ Q SM + GD+LI++ GD +++ G+ V K+L R
Sbjct: 37 PSSTFIGLAQGESMQGVGIYDGDLLIVDRHETARNGD-VIVANFNGEFVCKILDMHRRM- 94
Query: 191 RSIDLMSLNCCYPVDTV 207
LMS N + T+
Sbjct: 95 ----LMSSNEQHLPVTI 107
>gi|300724726|ref|YP_003714051.1| SOS response transcriptional repressor [Xenorhabdus nematophila
ATCC 19061]
gi|297631268|emb|CBJ91963.1| transcriptional repressor for SOS response (signal peptidase of
LexA family) [Xenorhabdus nematophila ATCC 19061]
Length = 205
Score = 38.8 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V+ G ++++ ++ K + G
Sbjct: 110 PSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVHNG-QVIVARIEDEVTVKRF-RQAGNR 167
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I+L++ N + + V++S
Sbjct: 168 IELIAENPEFELIVVDLSK 186
>gi|145588605|ref|YP_001155202.1| SOS-response transcriptional repressor, LexA [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047011|gb|ABP33638.1| SOS-response transcriptional repressor, LexA [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 239
Score = 38.8 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR-- 191
D K + SM GD L + +V GD ++ + V + +
Sbjct: 142 GADYLLKVKGMSMRDAGILDGDYLAVRKTTEVRNGDIVVARLDDEVTVKRWQQKKTANGM 201
Query: 192 SIDLMSLNCCYPVDTVEMSD 211
I+L + N + V+
Sbjct: 202 VIELQAENPDFKNIVVDSRQ 221
>gi|330830846|ref|YP_004393798.1| protein UmuD [Aeromonas veronii B565]
gi|328805982|gb|AEB51181.1| Protein UmuD [Aeromonas veronii B565]
Length = 147
Score = 38.8 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM + GD+L+++ ++ GD ++I G K L +
Sbjct: 48 PAATFYLRAEGESMTGVGIFPGDLLVVDKSLTPRHGD-VVIALLDGGFTVKTLQLKP--R 104
Query: 193 IDLMSLNCCYPV 204
+ L+ N +
Sbjct: 105 LRLLPANPAFAP 116
>gi|300714992|ref|YP_003739795.1| UmuD protein [Erwinia billingiae Eb661]
gi|299060828|emb|CAX57935.1| UmuD protein [Erwinia billingiae Eb661]
Length = 139
Score = 38.8 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
K SM GD+L++++++ GD +++ G+ K L R +
Sbjct: 48 PDSTYFIKVSGESMKDAGINDGDLLVVDNSLTAGHGD-IVVAAIDGEFTVKKLQLRP--T 104
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+++N + + D
Sbjct: 105 VQLIAMNARWAPIVLSGED 123
>gi|319761849|ref|YP_004125786.1| lexa repressor [Alicycliphilus denitrificans BC]
gi|317116410|gb|ADU98898.1| LexA repressor [Alicycliphilus denitrificans BC]
Length = 193
Score = 38.8 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 25/170 (14%)
Query: 56 ESIFKILAATN----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS----- 106
S+ K+ ++ L+ G + P + FF
Sbjct: 23 PSMAKLCDTVGLSSTSSVFALVGRLVEAGYLARVDSRIAP--------TRKFFARPLLSP 74
Query: 107 --GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
P PE+ + + + + + HK + SM +GD++++
Sbjct: 75 VRAGQPQPASQEE---PEVLTIDDYLIDDPNRTSLHKVRGDSMKDAGILEGDLVVVEHHT 131
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
GD +++ ++ K L+ L N Y + +E
Sbjct: 132 PTKPGD-IVVAWADNELTVKTLLLDPQGRYYLQPANSAYQP-IFPATSLE 179
>gi|330962394|gb|EGH62654.1| LexA repressor [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 202
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ EIP+L +G+ P G + + G + + D +
Sbjct: 73 PRPELLEIPVLGRVAAGA---------PIGP---DLDIHSTLHLDRGTFT-RVPDYLLRV 119
Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
Q SM GD++ ++ Q + G ++ + G++ K L R G + L+ N
Sbjct: 120 QGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQHR-GDQLHLLPRNPA 177
Query: 202 YPVDTVEMSD 211
Y V
Sbjct: 178 YQPIIVTPDQ 187
>gi|313894534|ref|ZP_07828098.1| repressor LexA [Veillonella sp. oral taxon 158 str. F0412]
gi|313440930|gb|EFR59358.1| repressor LexA [Veillonella sp. oral taxon 158 str. F0412]
Length = 223
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K++PL+ +G + N +T+ +P + + + + + Q
Sbjct: 97 GAGLKQVPLIGTVQAGM------PITAVENLESTLTLPVQLTGDSDCFLL-------RVQ 143
Query: 144 DTSMLPL--YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + Y +GD+LI+ N GD +++ + K G I L N
Sbjct: 144 GESMMNIGMY-EGDMLIVRHQNTANNGD-VVVARIDDEATVKRFYKENG-HIRLQPENDD 200
Query: 202 YPVDTVEMSDIE 213
+ V+ IE
Sbjct: 201 FDPIIVDDCHIE 212
>gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 256
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-C 201
SM P+ +G + +N + ++ + G K+L + + S N
Sbjct: 173 HGNSMEPVIPEGTTVAININDKKIVDGKVYAISQDGWNRLKILYRVGPNRLSIRSFNHVE 232
Query: 202 YPVDTVEMSDIEWIARILWAS 222
+P + ++ ++ I R+ W S
Sbjct: 233 HPDEEADLDSVQIIGRMFWTS 253
>gi|294791876|ref|ZP_06757024.1| repressor LexA [Veillonella sp. 6_1_27]
gi|294457106|gb|EFG25468.1| repressor LexA [Veillonella sp. 6_1_27]
Length = 223
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K++PL+ +G + N +T+ +P + + + + + Q
Sbjct: 97 GAGLKQVPLIGTVQAGM------PITAVENLESTLTLPVQLTGDSDCFLL-------RVQ 143
Query: 144 DTSMLPL--YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + Y +GD+LI+ N GD +++ + K G I L N
Sbjct: 144 GESMMNIGMY-EGDMLIVRHQNTANNGD-VVVARIDDEATVKRFYKENG-HIRLQPENDD 200
Query: 202 YPVDTVEMSDIE 213
+ V+ IE
Sbjct: 201 FDPIIVDDCHIE 212
>gi|294793737|ref|ZP_06758874.1| repressor LexA [Veillonella sp. 3_1_44]
gi|294455307|gb|EFG23679.1| repressor LexA [Veillonella sp. 3_1_44]
Length = 223
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K++PL+ +G + N +T+ +P + + + + + Q
Sbjct: 97 GAGLKQVPLIGTVQAGM------PITAVENLESTLTLPVQLTGDSDCFLL-------RVQ 143
Query: 144 DTSMLPL--YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + Y +GD+LI+ N GD +++ + K G I L N
Sbjct: 144 GESMMNIGMY-EGDMLIVRHQNTANNGD-VVVARIDDEATVKRFYKENG-HIRLQPENDD 200
Query: 202 YPVDTVEMSDIE 213
+ V+ IE
Sbjct: 201 FDPIIVDDCHIE 212
>gi|282850224|ref|ZP_06259603.1| repressor LexA [Veillonella parvula ATCC 17745]
gi|282579717|gb|EFB85121.1| repressor LexA [Veillonella parvula ATCC 17745]
Length = 223
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K++PL+ +G + N +T+ +P + + + + + Q
Sbjct: 97 GAGLKQVPLIGTVQAGM------PITAVENLESTLTLPVQLTGDSDCFLL-------RVQ 143
Query: 144 DTSMLPL--YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + Y +GD+LI+ N GD +++ + K G I L N
Sbjct: 144 GESMMNIGMY-EGDMLIVRHQNTANNGD-VVVARIDDEATVKRFYKENG-HIRLQPENDD 200
Query: 202 YPVDTVEMSDIE 213
+ V+ IE
Sbjct: 201 FDPIIVDDCHIE 212
>gi|238019292|ref|ZP_04599718.1| hypothetical protein VEIDISOL_01156 [Veillonella dispar ATCC 17748]
gi|237863991|gb|EEP65281.1| hypothetical protein VEIDISOL_01156 [Veillonella dispar ATCC 17748]
Length = 223
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K++PL+ +G + N +T+ +P + + + + + Q
Sbjct: 97 GAGLKQVPLIGTVQAGM------PITAVENLESTLTLPVQLTGDSDCFLL-------RVQ 143
Query: 144 DTSMLPL--YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + Y +GD+LI+ N GD +++ + K G I L N
Sbjct: 144 GESMMNIGMY-EGDMLIVRHQNTANNGD-VVVARIDDEATVKRFYKENG-HIRLQPENDD 200
Query: 202 YPVDTVEMSDIE 213
+ V+ IE
Sbjct: 201 FDPIIVDDCHIE 212
>gi|269797995|ref|YP_003311895.1| SOS-response transcriptional repressor, LexA [Veillonella parvula
DSM 2008]
gi|269094624|gb|ACZ24615.1| SOS-response transcriptional repressor, LexA [Veillonella parvula
DSM 2008]
Length = 223
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
K++PL+ +G + N +T+ +P + + + + + Q
Sbjct: 97 GAGLKQVPLIGTVQAGM------PITAVENLESTLTLPVQLTGDSDCFLL-------RVQ 143
Query: 144 DTSMLPL--YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + Y +GD+LI+ N GD +++ + K G I L N
Sbjct: 144 GESMMNIGMY-EGDMLIVRHQNTANNGD-VVVARIDDEATVKRFYKENG-HIRLQPENDD 200
Query: 202 YPVDTVEMSDIE 213
+ V+ IE
Sbjct: 201 FDPIIVDDCHIE 212
>gi|183220706|ref|YP_001838702.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189910807|ref|YP_001962362.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|229621214|sp|B0SFV4|LEXA_LEPBA RecName: Full=LexA repressor
gi|229621215|sp|B0SPA2|LEXA_LEPBP RecName: Full=LexA repressor
gi|167775483|gb|ABZ93784.1| Repressor lexA [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167779128|gb|ABZ97426.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 202
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
+ IPLL +G+ + N + VP+ + G +A++ +
Sbjct: 79 RASGIPLLGQVAAGA------PILAEENIEEYIAVPDDLATKPGTFALRVKGDSMVEAGI 132
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPV 204
S GDI I+ G +++ + KV I L N P+
Sbjct: 133 S------DGDIAIIQKKDTARNG-EIVVALIENEATLKVFFKE-PDMIRLEPRNAKLKPI 184
Query: 205 DTVEMSDI 212
T + + I
Sbjct: 185 RTKKATII 192
>gi|309792138|ref|ZP_07686610.1| peptidase S26B, signal peptidase [Oscillochloris trichoides DG6]
gi|308225679|gb|EFO79435.1| peptidase S26B, signal peptidase [Oscillochloris trichoides DG6]
Length = 590
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGR 191
+ + T SM P+Y +GD++++ + GD + + G ++ +++ R
Sbjct: 40 LGGKVTMIIVNGNSMEPVYYRGDLVLIRATSSYQIGDIVTYRHPQIGPVIHRIIGREGER 99
Query: 192 SIDLMSLNC-CYPVDTVEMSDI--EWIA 216
I N P V+ I W+
Sbjct: 100 WIFQGDHNEFIDPYRPVDADLIGRAWVH 127
>gi|262404835|ref|ZP_06081389.1| SOS-response repressor and protease LexA [Vibrio sp. RC586]
gi|262348919|gb|EEY98058.1| SOS-response repressor and protease LexA [Vibrio sp. RC586]
Length = 209
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ + E+ E +PL+ +G V P
Sbjct: 68 ILVDNAANEEEAETGLPLIGRVAAGEPIL----------AQEHVEAHYQVDPSMFR---P 114
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 115 QADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKVF 173
Query: 194 DLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 174 -LHAENEEFAPIEVDLAA 190
>gi|271499115|ref|YP_003332140.1| LexA family transcriptional regulator [Dickeya dadantii Ech586]
gi|270342670|gb|ACZ75435.1| transcriptional repressor, LexA family [Dickeya dadantii Ech586]
Length = 203
Score = 38.8 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 108 PSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNG-QVVVARIEDEVTVKRLKKQ-GNI 165
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++ +
Sbjct: 166 VQLLAENKEFSPIVVDLRE 184
>gi|257093704|ref|YP_003167345.1| LexA repressor [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257046228|gb|ACV35416.1| SOS-response transcriptional repressor, LexA [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 200
Score = 38.8 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 131 YAIQTQ------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
YA+ + D + + SM+ GD+L ++ + + G ++ + ++ K
Sbjct: 96 YALDSSLFRPRADFLLRVRGLSMINAGILDGDLLAVHHSSEARNGQIVVARLDD-EVTVK 154
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ ++L++ N + V+ S ARIL
Sbjct: 155 RF-RQHNGIVELIAENPDFEPIVVDTS-----ARIL 184
>gi|37520278|ref|NP_923655.1| LexA repressor protein [Gloeobacter violaceus PCC 7421]
gi|35211271|dbj|BAC88650.1| LexA repressor protein [Gloeobacter violaceus PCC 7421]
Length = 191
Score = 38.8 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
P + S + +T + + SM +GDI+++N +
Sbjct: 76 PAGSPV--TVEEDLLNSRMSLDEYLVEERTGTFLLRVKGDSMIEAGIFEGDIVVVNQNRR 133
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGR-SIDLM--SLNCCYP 203
GD ++I G++ K L R + ++ + +P
Sbjct: 134 AADGD-VVIARVDGEMTLKTLRRRNQQTWLEPANSRYSPIHP 174
>gi|9635515|ref|NP_059606.1| C2 [Enterobacteria phage P22]
gi|62362268|ref|YP_224193.1| gp55 [Enterobacteria phage ES18]
gi|168240083|ref|ZP_02665015.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451869|ref|YP_002044323.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|59800201|sp|P69202|RPC2_BPP22 RecName: Full=Repressor protein C2
gi|15655|emb|CAA24470.1| unnamed protein product [Enterobacteria phage P22]
gi|1143409|emb|CAA60873.1| c2 [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|8439602|gb|AAF75024.1| repressor protein [Enterobacteria phage P22]
gi|28394307|tpg|DAA01021.1| TPA_inf: prophage repressor [Enterobacteria phage P22]
gi|58339111|gb|AAW70526.1| gp55 [Enterobacteria phage ES18]
gi|169658888|dbj|BAG12645.1| prophage repressor [Enterobacteria phage P22]
gi|194410173|gb|ACF70392.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205340367|gb|EDZ27131.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
Length = 216
Score = 38.8 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 136 QDTRHKTQDTSM-LPL---YRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRG 190
Q SM P +G I++++ ++ G ++ K + K L+ G
Sbjct: 122 DSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVMDAG 181
Query: 191 RSIDLMSLNCCYP 203
R L LN YP
Sbjct: 182 RKF-LKPLNPQYP 193
>gi|313902000|ref|ZP_07835415.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
subterraneus DSM 13965]
gi|313467724|gb|EFR63223.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
subterraneus DSM 13965]
Length = 201
Score = 38.8 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 16/140 (11%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
+ + + +PL+ +G + N + + +P P ++A+
Sbjct: 65 AIEVLEESGLRTRTVPVPLVGQVTAGQ------PILAVENIEDVLPLPTELVPEGEVFAL 118
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GD +I+ + GD +++ + K R
Sbjct: 119 -------RIRGDSMIGAGILDGDYVIVRRQETADNGD-IVVALIDDEATVKRFYRER-DG 169
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I L N V + I
Sbjct: 170 IRLQPENPAMEPIRVRTARI 189
>gi|319942064|ref|ZP_08016383.1| peptidase S24 and S26 domain-containing protein [Sutterella
wadsworthensis 3_1_45B]
gi|319804448|gb|EFW01326.1| peptidase S24 and S26 domain-containing protein [Sutterella
wadsworthensis 3_1_45B]
Length = 315
Score = 38.8 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 23/136 (16%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPE-IRS 125
+ + K I G + FP+ + + +
Sbjct: 171 EDFGQIYRPAASPARFRMKRI-----------GMRAACGFPSPAADYESEDIDLSAWLVR 219
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
N + ++ S GD+LI + Q GD +++ G+I K L
Sbjct: 220 KPNSTFIVEASGDSMIDAGIS------DGDMLIFDRDAQPRGGD-IVLALYDGNITVKRL 272
Query: 186 ISRRGRSIDLMSLNCC 201
GR +L N
Sbjct: 273 RIVDGRP-ELHPENAA 287
>gi|258511546|ref|YP_003184980.1| transcriptional repressor, LexA family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478272|gb|ACV58591.1| transcriptional repressor, LexA family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 202
Score = 38.8 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Query: 107 GVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
P + + +P + + ++A++ GD+ I+
Sbjct: 89 AGLPISALEDIEGYLPLPRDVAKGDEVFALRVVGESMINAG------ILDGDLAIVRRQT 142
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+ GD ++ + K GR + L N
Sbjct: 143 SADNGDIVVAMTDEDEATIKRFYREDGR-VRLQPENDAMSPLYFP 186
>gi|317485643|ref|ZP_07944517.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
gi|316923104|gb|EFV44316.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
Length = 205
Score = 38.8 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM P+ R D ++++ ++ ++ GD L+ +++ K + R
Sbjct: 114 ESVMLDVIGHSMEPMIRHKDTILVDQSVKELRDGDIFLVGFGE-ELLVKRVQR-TPRGWL 171
Query: 195 LMSLNCCYPVDTVEMSDIE---------WIARIL 219
L S N + VE D+E W R++
Sbjct: 172 LKSENRDFSDIVVEGPDLETFRVYGRVRWFGRVV 205
>gi|309812129|ref|ZP_07705887.1| peptidase S24-like protein [Dermacoccus sp. Ellin185]
gi|308433816|gb|EFP57690.1| peptidase S24-like protein [Dermacoccus sp. Ellin185]
Length = 126
Score = 38.8 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
+ SM P Y GD++++ G +++ GD
Sbjct: 8 VRGRSMEPTYVDGDVVLVAWGASPRVGRCHVVRLPDGD 45
>gi|227113709|ref|ZP_03827365.1| LexA repressor [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 202
Score = 38.8 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++ + ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKDIGIMDGDLLAVHKTEDVRNGQIVVARIDD-EVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++
Sbjct: 165 VHLLAENEEFAPIVVDLRQ 183
>gi|296139522|ref|YP_003646765.1| transcriptional repressor, LexA family [Tsukamurella paurometabola
DSM 20162]
gi|296027656|gb|ADG78426.1| transcriptional repressor, LexA family [Tsukamurella paurometabola
DSM 20162]
Length = 236
Score = 38.8 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 134 QTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ K SM+ GD +++ GD ++ G+ K R G+
Sbjct: 148 EGSLFLLKVVGESMVDAAICDGDWVVVRQQSVAENGD-IVAAMLDGEATVKTF-RRTGKD 205
Query: 193 IDLMSLNCC----YPVDTVEMSDIEWIAR 217
+ LM N + D V + + + R
Sbjct: 206 VWLMPHNPAFDPIHGNDAVVLGKVVTVMR 234
>gi|325283869|ref|YP_004256410.1| LexA repressor [Deinococcus proteolyticus MRP]
gi|324315678|gb|ADY26793.1| LexA repressor [Deinococcus proteolyticus MRP]
Length = 221
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVL 185
+ ++ D SM+ GD++ + + + G+ +L+ + L
Sbjct: 108 EDVLDLKPGDFLLPVSGDSMIGAGIFDGDLVAIRPSQAEPLRGEIVLVLLPD--VSTATL 165
Query: 186 IS--RRGRSIDLMSLNCCYPVDTVEMSDIE 213
R + L S N Y V + +E
Sbjct: 166 KRWNRLNGVVSLHSENPAYAPIVVPATSVE 195
>gi|307307842|ref|ZP_07587570.1| putative phage repressor [Shewanella baltica BA175]
gi|306910061|gb|EFN40499.1| putative phage repressor [Shewanella baltica BA175]
Length = 217
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 144 DTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P+ + G IL +N +++ G ++K + ++ K+L I L S N Y
Sbjct: 133 GDSMEPVLKSGSILAVNPCQTRIDDGGLYVVKLGS-ELRVKILS-LSNEGITLKSFNKQY 190
Query: 203 PVDTVEMSDI 212
+TV+ D+
Sbjct: 191 LDETVKQGDV 200
>gi|160873045|ref|YP_001557051.1| putative phage repressor [Shewanella baltica OS195]
gi|160858567|gb|ABX51791.1| putative phage repressor [Shewanella baltica OS195]
Length = 214
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 144 DTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P+ + G IL +N +++ G ++K + ++ K+L I L S N Y
Sbjct: 130 GDSMEPVLKSGSILAVNPCQTRIDDGGLYVVKLGS-ELRVKILS-LSNEGITLKSFNKQY 187
Query: 203 PVDTVEMSDI 212
+TV+ D+
Sbjct: 188 LDETVKQGDV 197
>gi|262192231|ref|ZP_06050389.1| SOS-response repressor and protease LexA [Vibrio cholerae CT
5369-93]
gi|297581861|ref|ZP_06943782.1| LexA repressor [Vibrio cholerae RC385]
gi|262031904|gb|EEY50484.1| SOS-response repressor and protease LexA [Vibrio cholerae CT
5369-93]
gi|297533955|gb|EFH72795.1| LexA repressor [Vibrio cholerae RC385]
Length = 209
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ + E+ E +PL+ +G V P
Sbjct: 68 ILVDNAANEEEAETGLPLIGRVAAGEPIL----------AQEHVEAHYQVDPSMFR---P 114
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 115 QADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKVF 173
Query: 194 DLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 174 -LHAENEEFAPIEVDLAS 190
>gi|325130492|gb|EGC53249.1| hypothetical protein NMBOX9930304_0737 [Neisseria meningitidis
OX99.30304]
Length = 206
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
+DG+ + PLL + + F TG+ + +P +A+
Sbjct: 56 DADGKALSMRLTSRPLLSDRQAAA---FARTGKLTGS---FDLFASVVAPSQYTFAV--- 106
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
DTSM P+ KGD+L++ + D LI+ +V L
Sbjct: 107 ----AMPDTSMSPVIEKGDLLVVEPRMCPADEDIALIELSDKRLVVAHL 151
>gi|257869675|ref|ZP_05649328.1| signal peptidase I [Enterococcus gallinarum EG2]
gi|257803839|gb|EEV32661.1| signal peptidase I [Enterococcus gallinarum EG2]
Length = 182
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM R+GD++++ + D ++ + G K +I G SI
Sbjct: 37 PVGGNSMEGTLRQGDMVLIEKISPIKRFDVVVFQMPDGSTYIKRVIGLPGESI 89
>gi|163857094|ref|YP_001631392.1| LexA repressor [Bordetella petrii DSM 12804]
gi|229621207|sp|A9IR25|LEXA_BORPD RecName: Full=LexA repressor
gi|163260822|emb|CAP43124.1| LexA repressor [Bordetella petrii]
Length = 224
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
QT D K + SM +GD+L + A + G ++ + ++ K L +GR
Sbjct: 130 QTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGD-EVTVKRLQRHQGR- 187
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I+L+ N + V+ +
Sbjct: 188 IELLPENPDFSPIVVDGTQ 206
>gi|163854079|ref|YP_001642122.1| LexA repressor [Methylobacterium extorquens PA1]
gi|218533024|ref|YP_002423840.1| LexA repressor [Methylobacterium chloromethanicum CM4]
gi|163665684|gb|ABY33051.1| LexA repressor [Methylobacterium extorquens PA1]
gi|218525327|gb|ACK85912.1| SOS-response transcriptional repressor, LexA [Methylobacterium
chloromethanicum CM4]
Length = 240
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD+++++ N GD ++ + K L R G SI
Sbjct: 150 GEHYALEVRGDSMIEAGILDGDLVVIHKQETANNGDIIVALIDDEEATLKRLRRR-GSSI 208
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L + N Y + +
Sbjct: 209 ALEAANPAYETRVLGPDRV 227
>gi|21914458|gb|AAM81423.1|AF527608_45 C2 protein [Salmonella phage P22-pbi]
Length = 216
Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 136 QDTRHKTQDTSM-LPL---YRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRG 190
Q SM P +G I++++ ++ G ++ K + K L+ G
Sbjct: 122 DSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVMDAG 181
Query: 191 RSIDLMSLNCCYP 203
R L LN YP
Sbjct: 182 RKF-LKPLNPQYP 193
>gi|330999679|ref|ZP_08323388.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
11859]
gi|329574185|gb|EGG55761.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
11859]
Length = 224
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
R K + SM PL D++++ S ++ G R+ + K L + S
Sbjct: 130 PEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDG-RIYAFVFGNALRVKRLYRKIDGS 188
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
I + S N + +T++ D E
Sbjct: 189 IVVHSENPNFEDETIKPVDTE 209
>gi|294084070|ref|YP_003550828.1| LexA repressor [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663643|gb|ADE38744.1| LexA repressor [Candidatus Puniceispirillum marinum IMCC1322]
Length = 211
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 106 SGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P + + VP + +A++ SM+ +GD +++
Sbjct: 96 AAGTPIEALSDPTRQLEVPASMIGNGEHFALE-------IVGDSMIDAGILEGDTVVIER 148
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
A + G+ ++ + K L+ GR I L + N Y +E
Sbjct: 149 ANTASHGEIIVALINKQEATLKTLLKEPGR-IGLEAANPQYETRYFSTDAVE 199
>gi|218781420|ref|YP_002432738.1| phage repressor [Desulfatibacillum alkenivorans AK-01]
gi|218762804|gb|ACL05270.1| putative phage repressor [Desulfatibacillum alkenivorans AK-01]
Length = 229
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 140 HKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ SMLP + D +I++ +++ G+ + + K L +R + + ++S
Sbjct: 138 MVVRGDSMLPTLQDHDTVIVDLNRTRIDTGNIYAVNMGDDLLSIKRLEARGPQ-VRVISD 196
Query: 199 NCCYPVDTVEMSDIEWIARILWAS 222
N Y +E DI I +++W S
Sbjct: 197 NKAYEPYDMENQDIRVIGQVVWFS 220
>gi|77465797|ref|YP_355300.1| hypothetical protein RSP_3771 [Rhodobacter sphaeroides 2.4.1]
gi|77390215|gb|ABA81399.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 234
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 25/177 (14%)
Query: 56 ESIFKILAA------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGV 108
ES K+ A T+ +++ + + I + +G+ D+
Sbjct: 57 ESSPKVANAYALARELGRTVDEIIQIGMTGDLNARPAHAPIAVAGCVGAGARVDLLDA-- 114
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----Q 164
+ G+ V P PH GI A++ + SM+PLYR G +L A
Sbjct: 115 YEKGDGMYHVARPPQLKPH-GIVAVE-------VKGESMMPLYRPGSVLFYTRAAAEGVP 166
Query: 165 VNC-GDRLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
V + + G KV+ + L+SLN D + ++W A +L
Sbjct: 167 VEALNTPCVCEDADGRAWLKVVKVGSQEGTFSLLSLNPD--ADNMHGVRLKWAAPVL 221
>gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670]
Length = 229
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
++ + SM GD++ ++ + V GD + + GD+ K L + + I
Sbjct: 131 ESSVKLINVRGDSMEGTIEPGDLIFVDVGVSVFDGDGIYVFSFNGDMFVKRLQKVKSQLI 190
Query: 194 DLMSLNCCYPVDTVEMSDI 212
++S N Y T+ ++
Sbjct: 191 -VISDNPRYREWTISEEEM 208
>gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 209
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 36/168 (21%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
P S+ ++ N I + + +P++ G P
Sbjct: 49 PKLSSLNQVARFFNVDIDYFFNDSHPSNTLPLSRNTIRVPVIGTIACGD---------PI 99
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
N V + P I + +SM P GD +++ V
Sbjct: 100 DADENIVDYINVPEP------IPANAFALICEGSSMEPSIIDGDKVVIEPTPDVE----- 148
Query: 172 LIKPRTGDIVAKVLISRR----------GRSIDLMSLNCCYPVDTVEM 209
G++ A ++ + G SI LM N Y ++
Sbjct: 149 -----DGEVAAVLVDDQTKATLKRIKHIGNSIWLMPDNRDYDPIVLDA 191
>gi|117621500|ref|YP_855615.1| protein UmuD [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117562907|gb|ABK39855.1| protein UmuD [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 147
Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM + GD+L+++ ++ GD ++I G K L +
Sbjct: 48 PAATFYLRAEGESMTRVGIFPGDLLVVDKSLTPRHGD-VVIALLDGGFTVKTLQLKP--R 104
Query: 193 IDLMSLNCCYPV 204
+ L+ N +
Sbjct: 105 LRLLPANPAFAP 116
>gi|167033743|ref|YP_001668974.1| LexA repressor [Pseudomonas putida GB-1]
gi|166860231|gb|ABY98638.1| transcriptional repressor, LexA family [Pseudomonas putida GB-1]
Length = 205
Score = 38.4 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ EIP+L +G+ P G + + E ++ +T D
Sbjct: 72 AEPLRRPEILEIPVLGQVAAGA---------PIGP---DLDIHEQLLLDPSMFR-RTPDY 118
Query: 139 RHKTQDTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
K + SM+ ++ GD++ + G ++ + G++ K L + G + L+
Sbjct: 119 LLKVRGDSMIDDGIF-DGDLVGILQQADARDGQIVVARL-DGEVTIKRLQRQ-GGNYRLL 175
Query: 197 SLNCCYPVDTVEMSD 211
N Y V+
Sbjct: 176 PRNPAYAPIDVQPEQ 190
>gi|299529254|ref|ZP_07042698.1| putative phage repressor [Comamonas testosteroni S44]
gi|298722778|gb|EFI63691.1| putative phage repressor [Comamonas testosteroni S44]
Length = 185
Score = 38.4 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 144 DTSMLPLYRKGDILILNSAIQ------------VNCGDRLLIKPRTGDIVAK-VLISRRG 190
SM P + GD+L++++ + + DR IK T K + S
Sbjct: 97 GDSMHPTFTDGDVLLVDTGLNARDPSSREGVYVLRANDRTFIKRVTPTFDGKLQVTSDNP 156
Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
+ + +LN + ++ + R++WA
Sbjct: 157 SAKTVQTLNGDH--------QVDVVGRVVWA 179
>gi|293395527|ref|ZP_06639810.1| SOS mutagenesis and repair protein UmuD [Serratia odorifera DSM
4582]
gi|291421846|gb|EFE95092.1| SOS mutagenesis and repair protein UmuD [Serratia odorifera DSM
4582]
Length = 139
Score = 38.4 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SM+ GD+L+++SA+ G+ ++I G+ K L R
Sbjct: 48 PNATYFVRASGNSMIDANIHDGDLLVVDSALNAEHGN-IVIAAIDGEFTVKRLQLHPTR- 105
Query: 193 IDLMSLNCCYPVDTVE 208
L+++N Y +
Sbjct: 106 -QLVAMNPAYAPIILA 120
>gi|146283672|ref|YP_001173825.1| ultraviolet light resistance protein A [Pseudomonas stutzeri A1501]
gi|145571877|gb|ABP80983.1| ultraviolet light resistance protein A [Pseudomonas stutzeri A1501]
Length = 143
Score = 38.4 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
I L +F F FP+ + + I A +
Sbjct: 7 GPAAPATIALPFFS------FCVPAGFPS-PAQDHMEGSISLDELMNIRA--PHTYLARA 57
Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ + DILI++ + G ++I + + K+ + I L S N
Sbjct: 58 DGESMIQVGIFDRDILIIDRGREAEKG-EVIIAALNNEPLVKIFDRAGSQVI-LRSANPK 115
Query: 202 YPVDTVEMSD 211
+P + S+
Sbjct: 116 FPPRYLLESE 125
>gi|218561643|ref|YP_002394555.1| Protein impA [Contains: Protein impA'] (modular protein)
[Escherichia fergusonii ATCC 35469]
gi|218350157|emb|CAQ86919.1| Protein impA [Contains: Protein impA'] (modular protein)
[Escherichia fergusonii]
Length = 235
Score = 38.4 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 119 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLY-NGDLLVVDSAEKP 174
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM--SLNCCYPVD 205
GD +++ G+ K L+ ++ M S + YP
Sbjct: 175 RHGD-IVVASMQGEFTVKRLLLTPRLTLQPMNASWSPIYPDP 215
>gi|15640124|ref|NP_229751.1| LexA repressor [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587645|ref|ZP_01677408.1| LexA repressor [Vibrio cholerae 2740-80]
gi|121727782|ref|ZP_01680858.1| LexA repressor [Vibrio cholerae V52]
gi|147674841|ref|YP_001218323.1| LexA repressor [Vibrio cholerae O395]
gi|153214612|ref|ZP_01949488.1| LexA repressor [Vibrio cholerae 1587]
gi|153801685|ref|ZP_01956271.1| LexA repressor [Vibrio cholerae MZO-3]
gi|153818212|ref|ZP_01970879.1| LexA repressor [Vibrio cholerae NCTC 8457]
gi|153822131|ref|ZP_01974798.1| LexA repressor [Vibrio cholerae B33]
gi|153826622|ref|ZP_01979289.1| LexA repressor [Vibrio cholerae MZO-2]
gi|153829104|ref|ZP_01981771.1| LexA repressor [Vibrio cholerae 623-39]
gi|227080328|ref|YP_002808879.1| LexA repressor [Vibrio cholerae M66-2]
gi|229508375|ref|ZP_04397879.1| SOS-response repressor and protease LexA [Vibrio cholerae BX
330286]
gi|229508943|ref|ZP_04398433.1| SOS-response repressor and protease LexA [Vibrio cholerae B33]
gi|229515868|ref|ZP_04405326.1| SOS-response repressor and protease LexA [Vibrio cholerae TMA 21]
gi|229517057|ref|ZP_04406503.1| SOS-response repressor and protease LexA [Vibrio cholerae RC9]
gi|229520109|ref|ZP_04409537.1| SOS-response repressor and protease LexA [Vibrio cholerae TM
11079-80]
gi|229524994|ref|ZP_04414399.1| SOS-response repressor and protease LexA [Vibrio cholerae bv.
albensis VL426]
gi|229527160|ref|ZP_04416554.1| SOS-response repressor and protease LexA [Vibrio cholerae 12129(1)]
gi|229606650|ref|YP_002877298.1| LexA repressor [Vibrio cholerae MJ-1236]
gi|254851478|ref|ZP_05240828.1| LexA repressor [Vibrio cholerae MO10]
gi|255743948|ref|ZP_05417903.1| SOS-response repressor and protease LexA [Vibrio cholera CIRS 101]
gi|262151323|ref|ZP_06028457.1| SOS-response repressor and protease LexA [Vibrio cholerae INDRE
91/1]
gi|262167242|ref|ZP_06034953.1| SOS-response repressor and protease LexA [Vibrio cholerae RC27]
gi|298501132|ref|ZP_07010932.1| LexA repressor [Vibrio cholerae MAK 757]
gi|13431643|sp|Q9KVP9|LEXA_VIBCH RecName: Full=LexA repressor
gi|172047512|sp|A5F4F6|LEXA_VIBC3 RecName: Full=LexA repressor
gi|254809109|sp|C3LPT4|LEXA_VIBCM RecName: Full=LexA repressor
gi|9654490|gb|AAF93270.1| LexA repressor [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121548086|gb|EAX58161.1| LexA repressor [Vibrio cholerae 2740-80]
gi|121629906|gb|EAX62318.1| LexA repressor [Vibrio cholerae V52]
gi|124115218|gb|EAY34038.1| LexA repressor [Vibrio cholerae 1587]
gi|124122778|gb|EAY41521.1| LexA repressor [Vibrio cholerae MZO-3]
gi|126511241|gb|EAZ73835.1| LexA repressor [Vibrio cholerae NCTC 8457]
gi|126520337|gb|EAZ77560.1| LexA repressor [Vibrio cholerae B33]
gi|146316724|gb|ABQ21263.1| LexA repressor [Vibrio cholerae O395]
gi|148875432|gb|EDL73567.1| LexA repressor [Vibrio cholerae 623-39]
gi|149739560|gb|EDM53784.1| LexA repressor [Vibrio cholerae MZO-2]
gi|227008216|gb|ACP04428.1| LexA repressor [Vibrio cholerae M66-2]
gi|227011906|gb|ACP08116.1| LexA repressor [Vibrio cholerae O395]
gi|229335391|gb|EEO00874.1| SOS-response repressor and protease LexA [Vibrio cholerae 12129(1)]
gi|229338575|gb|EEO03592.1| SOS-response repressor and protease LexA [Vibrio cholerae bv.
albensis VL426]
gi|229342897|gb|EEO07887.1| SOS-response repressor and protease LexA [Vibrio cholerae TM
11079-80]
gi|229346120|gb|EEO11092.1| SOS-response repressor and protease LexA [Vibrio cholerae RC9]
gi|229347131|gb|EEO12092.1| SOS-response repressor and protease LexA [Vibrio cholerae TMA 21]
gi|229354060|gb|EEO18993.1| SOS-response repressor and protease LexA [Vibrio cholerae B33]
gi|229354648|gb|EEO19570.1| SOS-response repressor and protease LexA [Vibrio cholerae BX
330286]
gi|229369305|gb|ACQ59728.1| SOS-response repressor and protease LexA [Vibrio cholerae MJ-1236]
gi|254847183|gb|EET25597.1| LexA repressor [Vibrio cholerae MO10]
gi|255738431|gb|EET93821.1| SOS-response repressor and protease LexA [Vibrio cholera CIRS 101]
gi|262024306|gb|EEY42996.1| SOS-response repressor and protease LexA [Vibrio cholerae RC27]
gi|262030862|gb|EEY49492.1| SOS-response repressor and protease LexA [Vibrio cholerae INDRE
91/1]
gi|297540166|gb|EFH76227.1| LexA repressor [Vibrio cholerae MAK 757]
gi|327482999|gb|AEA77406.1| SOS-response repressor and protease LexA [Vibrio cholerae
LMA3894-4]
Length = 209
Score = 38.4 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ + E+ E +PL+ +G V P
Sbjct: 68 ILVDNAANEEEAETGLPLIGRVAAGEPIL----------AQEHVEAHYQVDPSMFR---P 114
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 115 QADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKVF 173
Query: 194 DLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 174 -LHAENEEFAPIEVDLAA 190
>gi|226354933|ref|YP_002784673.1| LexA repressor [Deinococcus deserti VCD115]
gi|226316923|gb|ACO44919.1| putative LexA repressor [Deinococcus deserti VCD115]
Length = 240
Score = 38.4 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 11/151 (7%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
+ + L T LP E + L+ P + P + +
Sbjct: 75 LRRALELTASEWIARTGLPLLTPVPGEDVLGTLELVRVPV----RALATAGLPLTEDFES 130
Query: 118 V---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLI 173
+ + +R G+ ++ Q T + R GD + +++ + + G ++
Sbjct: 131 IIDHELVPLRDHRPGMLVLEVQGDSMTTDGGAGG--IRSGDRIYVDAGDLDLREGRVYVL 188
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+ K L R GR + L S N +P
Sbjct: 189 HVPGLGLTVKRL-RRYGRELWLTSDNPDHPP 218
>gi|120612236|ref|YP_971914.1| putative phage repressor [Acidovorax citrulli AAC00-1]
gi|120590700|gb|ABM34140.1| putative phage repressor [Acidovorax citrulli AAC00-1]
Length = 225
Score = 38.4 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + GD+L++++ ++ D + + + K + R + ++ S N
Sbjct: 140 GDSMEPTFLDGDVLLVDAGVRTLEVDGIYVLAAQNRLFIKRVRQRLDGAYEISSDNPT-- 197
Query: 204 VDTVEMSD----IEWIARILW 220
V TV++ D +E + +++W
Sbjct: 198 VKTVDVLDGKHAVEILGKVIW 218
>gi|319762239|ref|YP_004126176.1| lexa repressor [Alicycliphilus denitrificans BC]
gi|317116800|gb|ADU99288.1| LexA repressor [Alicycliphilus denitrificans BC]
Length = 193
Score = 38.4 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 25/170 (14%)
Query: 56 ESIFKILAATN----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS----- 106
S+ K+ ++ L+ G + P + FF
Sbjct: 23 PSMAKLCETVGLSSTSSVFALVGRLVEAGYLERVDGRIAP--------TRKFFARPLLSP 74
Query: 107 --GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
P PE+ + + + + + HK + SM +GD++++
Sbjct: 75 VRAGQPQPASQEE---PEVLTIDDYLIDDPNRTSLHKVRGDSMKDAGILEGDLVVVEHHT 131
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
GD +++ ++ K L+ L N Y + +E
Sbjct: 132 PTKPGD-IVVAWADNELTVKTLLLDPQSRYYLQPANSAYKP-IFPATSLE 179
>gi|254291837|ref|ZP_04962621.1| LexA repressor [Vibrio cholerae AM-19226]
gi|150422273|gb|EDN14236.1| LexA repressor [Vibrio cholerae AM-19226]
Length = 209
Score = 38.4 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 114 PQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKV 172
Query: 193 IDLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 173 F-LHAENEEFAPIEVDLAA 190
>gi|310815693|ref|YP_003963657.1| hypothetical protein EIO_1214 [Ketogulonicigenium vulgare Y25]
gi|308754428|gb|ADO42357.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
Length = 178
Score = 38.4 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 26/166 (15%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
KI AA T+ D FS I D F G+ V
Sbjct: 19 KIAAAFGVTLEDFYDGNFSGSGRKTAVAGRI-----GAGAQVELMDD--FAKGDGIYHVE 71
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN------SAIQVNCGDRLLI 173
P H GI A++ SM P Y G ++ + + +N +
Sbjct: 72 TPNHLPTH-GIVAVE-------VTGDSMEPFYESGGVVFYSRDTIGVPSEALNK--ICVA 121
Query: 174 KPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ G + K + L+SLN + ++W A I
Sbjct: 122 ECEEGKVWLKQVKQGNEPHLFHLLSLNMTAEP--MFNRRLKWAAPI 165
>gi|160872978|ref|YP_001556985.1| peptidase S24/S26 domain-containing protein [Shewanella baltica
OS195]
gi|160858500|gb|ABX51725.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195]
Length = 144
Score = 38.4 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + +P + + +T SM + GDILI++ A
Sbjct: 13 SGFPSPAA-DYLELPLSLDQ--LLVEHPSSTWFGRTAGRSMEGVGIYDGDILIIDRAAP- 68
Query: 166 NCGDRLLIKPRTGDIVAKVLISRR 189
L++ G+ K+L +R
Sbjct: 69 RRNMSLVVASYNGEFTVKLLDMKR 92
>gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185]
gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185]
Length = 263
Score = 38.4 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SMLP+ + G + ++++ + ++ G + K+L G I
Sbjct: 164 PQYAACVTVSGDSMLPVLQDGTTVGVDTSKKNIIDGKMYAIDHDGMLRVKILYRMPGGGI 223
Query: 194 DLMSL-NCCYPVDTVEMSDIEWIARILWA 221
+ S N YP + ++ + I I W
Sbjct: 224 RIKSYNNDEYPDEFIQPEQMSNIKIIGWV 252
>gi|258626612|ref|ZP_05721442.1| LexA repressor [Vibrio mimicus VM603]
gi|258581116|gb|EEW06035.1| LexA repressor [Vibrio mimicus VM603]
Length = 209
Score = 38.4 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 114 PQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKV 172
Query: 193 IDLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 173 F-LHAENEEFAPIEVDLAA 190
>gi|227327408|ref|ZP_03831432.1| LexA repressor [Pectobacterium carotovorum subsp. carotovorum
WPP14]
gi|261820054|ref|YP_003258160.1| LexA repressor [Pectobacterium wasabiae WPP163]
gi|417244|sp|Q04596|LEXA_PECCC RecName: Full=LexA repressor
gi|41918|emb|CAA44871.1| lexA [Pectobacterium carotovorum]
gi|261604067|gb|ACX86553.1| transcriptional repressor, LexA family [Pectobacterium wasabiae
WPP163]
Length = 202
Score = 38.4 bits (88), Expect = 0.71, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++ + ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIVVARIDD-EVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++
Sbjct: 165 VHLLAENEEFAPIVVDLRQ 183
>gi|188584409|ref|YP_001927854.1| LexA repressor [Methylobacterium populi BJ001]
gi|179347907|gb|ACB83319.1| transcriptional repressor, LexA family [Methylobacterium populi
BJ001]
Length = 240
Score = 38.4 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD+++++ N GD ++ + K L R G SI
Sbjct: 150 GEHYALEVRGDSMIEAGILDGDLVVIHKQDTANNGDIIVALIDDEEATLKRLRRR-GSSI 208
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L + N Y + +
Sbjct: 209 ALEAANPAYETRVLGPDRV 227
>gi|312961762|ref|ZP_07776260.1| putative prophage repressor [Pseudomonas fluorescens WH6]
gi|311284021|gb|EFQ62604.1| putative prophage repressor [Pseudomonas fluorescens WH6]
Length = 211
Score = 38.4 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 43/204 (21%)
Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
+AER ++ G+ N KR R PS E + ++L A +++
Sbjct: 22 LAERLGMSQGGVGHW-------LN--KR-------RVPSLEDMNRVLEALGLGYLEVVQQ 65
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-----GVPEIRSPHNGI 130
K +F +P + W+ + P +
Sbjct: 66 VRERADEAPALVKR----------YNPYFR---YPVSD-WDALCEVCDERPAYGDARFEL 111
Query: 131 --YAIQTQDTRHKTQDTSM-LPL---YRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAK 183
Y + +M P G +++++ A+ G ++ + +
Sbjct: 112 SDYHARGDAFWLPVTGDAMTAPTGLSIAAGMLILVDPALIAEPGKLVVAQWADSPQATFR 171
Query: 184 VLISRRGRSIDLMSLNCCYPVDTV 207
L+ G+ L+ LN YP
Sbjct: 172 QLLEESGQRY-LVPLNPTYPKQRF 194
>gi|50119579|ref|YP_048746.1| LexA repressor [Pectobacterium atrosepticum SCRI1043]
gi|71658812|sp|Q6D9I5|LEXA_ERWCT RecName: Full=LexA repressor
gi|49610105|emb|CAG73545.1| LexA repressor [Pectobacterium atrosepticum SCRI1043]
Length = 202
Score = 38.4 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++ + ++ K L + G +
Sbjct: 107 PSADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIVVARIDD-EVTVKRLKKQ-GNT 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L++ N + V++
Sbjct: 165 VHLLAENEEFAPIVVDLRQ 183
>gi|253755127|ref|YP_003028267.1| DNA-binding protein [Streptococcus suis BM407]
gi|251817591|emb|CAZ55338.1| putative DNA-binding protein [Streptococcus suis BM407]
Length = 230
Score = 38.4 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 9/126 (7%)
Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
K IPL F P ++ + S D
Sbjct: 96 HNKIIPLFAVEVLSEIQLF--AG-PGEGLYDEFETETVYSEDEYT----GFDIATWISGN 148
Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
SM P+Y+ G++ ++ S G + G + K L ++S+N
Sbjct: 149 SMEPVYKDGEVALIRSTGFDYDG-AVYALNWNGSLYIKKLYRE-EDGFRMVSINPDVAER 206
Query: 206 TVEMSD 211
+ D
Sbjct: 207 FIPFED 212
>gi|332283989|ref|YP_004415900.1| LexA repressor [Pusillimonas sp. T7-7]
gi|330427942|gb|AEC19276.1| LexA repressor [Pusillimonas sp. T7-7]
Length = 220
Score = 38.4 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
QT D + + SM GD+L + + G ++ + ++ K G+
Sbjct: 126 QTPDYLLRVRGLSMRDAGILDGDLLAVKKSPDARNGQIVVARIGD-EVTVKRFAR-TGKH 183
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I+L+ N + V SD
Sbjct: 184 IELLPENPDFEPIIVTASD 202
>gi|315093311|gb|EFT65287.1| LexA DNA binding domain protein [Propionibacterium acnes HL060PA1]
Length = 224
Score = 38.4 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 112 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPNIHSGDLVVVRRISVSDLPDDPPET 171
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 172 S--LVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 213
>gi|269219559|ref|ZP_06163413.1| repressor LexA [Actinomyces sp. oral taxon 848 str. F0332]
gi|269210801|gb|EEZ77141.1| repressor LexA [Actinomyces sp. oral taxon 848 str. F0332]
Length = 237
Score = 38.4 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 27/157 (17%)
Query: 73 LDLPFSDGRTTEKKEKE---------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
+P K E +P++ +GS D V + +P
Sbjct: 92 AGIPRGAAAEEPKTSAEDFHVDPSVNVPVVGRIAAGSPILADQVV------EEVLPLPRS 145
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ ++ + K SM GD +++ V ++ G+
Sbjct: 146 LTGDGELFML-------KVVGDSMVEAAICDGDWVVIR-RQPVAENGEIVAAMIEGEATV 197
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
KVL + G ++ L+ N Y + D E + R++
Sbjct: 198 KVLQRKDGHTL-LLPRNSEY--RPIPADDAEVLGRVV 231
>gi|183602410|ref|ZP_02963776.1| LexA repressor [Bifidobacterium animalis subsp. lactis HN019]
gi|219683275|ref|YP_002469658.1| LexA repressor [Bifidobacterium animalis subsp. lactis AD011]
gi|241191236|ref|YP_002968630.1| LexA repressor [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196642|ref|YP_002970197.1| LexA repressor [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|183218329|gb|EDT88974.1| LexA repressor [Bifidobacterium animalis subsp. lactis HN019]
gi|219620925|gb|ACL29082.1| LexA repressor [Bifidobacterium animalis subsp. lactis AD011]
gi|240249628|gb|ACS46568.1| LexA repressor [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240251196|gb|ACS48135.1| LexA repressor [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|289177352|gb|ADC84598.1| LexA repressor [Bifidobacterium animalis subsp. lactis BB-12]
gi|295794229|gb|ADG33764.1| LexA repressor [Bifidobacterium animalis subsp. lactis V9]
Length = 231
Score = 38.4 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 16/139 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+PF ++PL+ +G + + + + +P + ++ ++
Sbjct: 97 VPFDGMDLEPSDFLDVPLVGAIAAGQ------PITAEQHVEDVMRLPVRLTGTGNLFMLE 150
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM GD +++ GD ++ + K +
Sbjct: 151 -------VKGDSMIDAAICDGDFVVVREQHNAENGD-IVAALLDDEATVKTF-RQEHGHT 201
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L+ N Y + I
Sbjct: 202 WLIPHNPNYAPIDGTHAQI 220
>gi|328543728|ref|YP_004303837.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [polymorphum gilvum SL003B-26A1]
gi|326413472|gb|ADZ70535.1| SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Polymorphum gilvum SL003B-26A1]
Length = 237
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 15/153 (9%)
Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
++ + IP++ +G + +++ VP
Sbjct: 93 SLGRAPAQAGRTEAGDPAGMATIPVMGRIAAGV------PIEAIQTHSHSISVPPELLGR 146
Query: 128 NGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
YA++ + SM GD +++ GD ++ + K L
Sbjct: 147 GEHYALE-------VRGDSMIEAGILDGDTVLIRKTDSAESGDIVVALVDDEEATLKRLR 199
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ SI L + N Y + R++
Sbjct: 200 KKGP-SIALEAANPAYETRIFGPGRVRIQGRLV 231
>gi|240141533|ref|YP_002966013.1| SOS response transcriptional repressor, lexA [Methylobacterium
extorquens AM1]
gi|254564050|ref|YP_003071145.1| SOS response transcriptional repressor, lexA [Methylobacterium
extorquens DM4]
gi|240011510|gb|ACS42736.1| SOS response transcriptional repressor, lexA [Methylobacterium
extorquens AM1]
gi|254271328|emb|CAX27340.1| SOS response transcriptional repressor, lexA [Methylobacterium
extorquens DM4]
Length = 258
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD+++++ N GD ++ + K L R G SI
Sbjct: 168 GEHYALEVRGDSMIEAGILDGDLVVIHKQETANNGDIIVALIDDEEATLKRLRRR-GSSI 226
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L + N Y + +
Sbjct: 227 ALEAANPAYETRVLGPDRV 245
>gi|120434637|ref|YP_860327.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
KT0803]
gi|117576787|emb|CAL65256.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
KT0803]
Length = 255
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIK 174
+ +PE R+ + I+ SMLP YR G+ ++ + + +++ +
Sbjct: 124 DIPLPEFRNATYRGFQIE---------GDSMLPDYRPGEWVMGKAVSSIEEASNNKVYVI 174
Query: 175 PRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDI 212
++ K L + L+SLN Y + + DI
Sbjct: 175 VMYDSVLVKKLQKMPDPSKVLLISLNEEYLPLEINVHDI 213
>gi|27379937|ref|NP_771466.1| LexA repressor [Bradyrhizobium japonicum USDA 110]
gi|44888103|sp|Q89KS7|LEXA_BRAJA RecName: Full=LexA repressor
gi|27353090|dbj|BAC50091.1| LexA repressor [Bradyrhizobium japonicum USDA 110]
Length = 231
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM GD+ ++ + GD ++
Sbjct: 130 TISVPPDMLGSGEHYALE-------VRGDSMVEAGILDGDMALIQRNESADTGDIVVALI 182
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 183 DDEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRV 218
>gi|325661109|ref|ZP_08149736.1| hypothetical protein HMPREF0490_00469 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472616|gb|EGC75827.1| hypothetical protein HMPREF0490_00469 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 209
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 144 DTSMLPLYRKGDILILN----SAIQVNCGDRLLIKPRTGD---IVAKVLISRRGRSIDLM 196
SM P+ GDI+++N D ++ +P + K ++ G +I L
Sbjct: 68 GDSMNPVLHNGDIVLVNRLIYDTSTPKRNDIIVFRPNGNENAHASIKRIVGLPGETIQLK 127
Query: 197 S----LNCCYPVDTVEMSDI 212
+N + + ++I
Sbjct: 128 DNAVYINGEKLKENFQTTEI 147
>gi|316933939|ref|YP_004108921.1| LexA family transcriptional repressor [Rhodopseudomonas palustris
DX-1]
gi|315601653|gb|ADU44188.1| transcriptional repressor, LexA family [Rhodopseudomonas palustris
DX-1]
Length = 236
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P ++ +P++ +G+ + + +TV VP YA++
Sbjct: 100 PVPSEDDGDRGSVAVPVMGRIAAGT------PIEALQTRSHTVSVPADMLGSGEHYALE- 152
Query: 136 QDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM GD+ ++ N GD ++ + K R SI
Sbjct: 153 ------VRGDSMVEAGILDGDMALIQKNDVANTGDIVVALIDEEEATLKRFRRRGA-SIA 205
Query: 195 LMSLNCCYPVDTVEMSDI 212
L N Y V + + +
Sbjct: 206 LEPANAAYEVRILPPNRV 223
>gi|262273578|ref|ZP_06051392.1| SOS-response repressor and protease LexA [Grimontia hollisae CIP
101886]
gi|262222556|gb|EEY73867.1| SOS-response repressor and protease LexA [Grimontia hollisae CIP
101886]
Length = 207
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ +V G +++ D+ K L + +
Sbjct: 112 PNADFLLRVSGMSMKDIGILDGDLLAVHKTQEVRNGQ-VVVARVEDDVTVKRLERKGNQV 170
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L + N + V++S
Sbjct: 171 L-LHAENEEFAPIVVDLSQ 188
>gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
Length = 210
Score = 38.4 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 13/174 (7%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETICQ 71
I + ER + LA +AG+ +S IE GR+ P E+ KI T+ +
Sbjct: 8 IKELRERRGWPQTELADRAGIS-----RSSLATIEIGRSV-PKVETSIKIAKVFGMTVEE 61
Query: 72 LL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
L + E E + L + + V G + V P
Sbjct: 62 LYSKAGYETGKTVVETTEDILERLRLASPIAVPVYTDFVIHAG---DNVEAPIEYIYLAR 118
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
A+ + + M P + GDI I++ I G+ +++ +IV
Sbjct: 119 PKAVGKNIEAYLIKGQCMEPDIQDGDIAIVDRDIAPEKGN-IILCLINSEIVIG 171
>gi|261210193|ref|ZP_05924490.1| SOS-response repressor and protease LexA [Vibrio sp. RC341]
gi|260840733|gb|EEX67282.1| SOS-response repressor and protease LexA [Vibrio sp. RC341]
Length = 209
Score = 38.4 bits (88), Expect = 0.77, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
+ + E+ E +PL+ +G V P
Sbjct: 68 ILVDNAANEEEAETGLPLIGRVAAGEPIL----------AQEHVEAHYQVDPSMFR---P 114
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
D + SM + GD+L ++ V G ++++ D+ K L + +
Sbjct: 115 QADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNG-QVVVARVEDDVTVKRLERKGSKVF 173
Query: 194 DLMSLNCCYPVDTVEMSD 211
L + N + V+++
Sbjct: 174 -LHAENEEFAPIEVDLAA 190
>gi|87119734|ref|ZP_01075631.1| probable transcriptional regulator [Marinomonas sp. MED121]
gi|86165210|gb|EAQ66478.1| probable transcriptional regulator [Marinomonas sp. MED121]
Length = 244
Score = 38.4 bits (88), Expect = 0.77, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 9/129 (6%)
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDI 156
FF GN +N V + + + K SM P+ G
Sbjct: 113 FFSEIELSAGNGFNNVLDIATQKLRFNVSTLNKAGVSSDTVACCKVNGDSMEPILPNGST 172
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIE 213
+ L+ + ++ G + K L + + S N + + + D+
Sbjct: 173 VGLDISQTKIQDGKMYAIEHGGMLRVKYLYRLPFNGLRIRSANPDHHDEELSGESALDVR 232
Query: 214 WIARILWAS 222
I R+ W S
Sbjct: 233 VIGRVFWYS 241
>gi|331007082|ref|ZP_08330306.1| SOS-response transcriptional repressor [gamma proteobacterium
IMCC1989]
gi|330419099|gb|EGG93541.1| SOS-response transcriptional repressor [gamma proteobacterium
IMCC1989]
Length = 204
Score = 38.4 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 19/126 (15%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
+P++ + +G P ++W + +A+ Q SM
Sbjct: 74 RVPVISWVQAGEWTAIVDHFQPGDADEWQE----TTAKVGSNAFAL-------HVQGDSM 122
Query: 148 L-----PLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCC 201
+ P +G I+I++ V+ G ++ + + K L+ L LN
Sbjct: 123 VNPSGSPSIPEGSIVIVDPDTVVDNGKIVVARLEESSEATLKKLVIDGPHRY-LKPLNPD 181
Query: 202 YPVDTV 207
Y +
Sbjct: 182 YRPIQI 187
>gi|217970698|ref|YP_002355932.1| LexA repressor [Thauera sp. MZ1T]
gi|217508025|gb|ACK55036.1| SOS-response transcriptional repressor, LexA [Thauera sp. MZ1T]
Length = 202
Score = 38.4 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + + SM GD++ ++ + G ++++ D+ K L +
Sbjct: 109 PRADYLLRVRGMSMRDAGILDGDLIAVHRNSEARNG-QIVVARVDDDVTVKTLQRKGP-V 166
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N Y V+
Sbjct: 167 VELLPANPDYTPIVVDTRR 185
>gi|241762947|ref|ZP_04761009.1| putative phage repressor [Acidovorax delafieldii 2AN]
gi|241367899|gb|EER62118.1| putative phage repressor [Acidovorax delafieldii 2AN]
Length = 191
Score = 38.4 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 35/162 (21%)
Query: 51 RW--------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
RW P ES ++ A + +++ + I + + +
Sbjct: 25 RWFDAPEPGLPDLESFARLCAGLGCSADEIIGALRPQAEDQAHCTQLIQVANCIQAIADS 84
Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
+G P + M P + GD++ ++S
Sbjct: 85 L---------AHRGQLGTP------------------VQVPGDEMAPHLKAGDLVFVDST 117
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+ G+ + G ++ + + R RSI L N Y
Sbjct: 118 VTELAGNGIYAFTCNGSLLIRRVERRIDRSIVLKCDNKAYQD 159
>gi|163760898|ref|ZP_02167977.1| putative LexA repressor (SOS regulatory protein) [Hoeflea
phototrophica DFL-43]
gi|162281942|gb|EDQ32234.1| putative LexA repressor (SOS regulatory protein) [Hoeflea
phototrophica DFL-43]
Length = 238
Score = 38.4 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + SM+ GD +++ + + GD ++ + K + S
Sbjct: 146 PGEHYALEVKGDSMIDAGIFDGDTVVIRNVSTASPGDIVVALVDDEEATLKRFRRKGA-S 204
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I L + N Y +
Sbjct: 205 IALEAANPAYETRIFGPDRV 224
>gi|319955273|ref|YP_004166540.1| phage repressor [Cellulophaga algicola DSM 14237]
gi|319423933|gb|ADV51042.1| putative phage repressor [Cellulophaga algicola DSM 14237]
Length = 251
Score = 38.4 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 29/172 (16%)
Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
W ES K + ++ + T + ++E +L + +
Sbjct: 60 PLWLFNESDSKYIETSHTS-------VIPKVVTVDSADRENMVLVNAKAA-------AGY 105
Query: 110 P---TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
P W +P P + + SMLP R G+ ++ A +
Sbjct: 106 PQNIADTSWYQ-QLPAFDLPIPEFR--NATYRGFQVEGDSMLPNLRPGEWVL---AKAIE 159
Query: 167 CGDRL------LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
D + ++ + +V KV+ ++ L+SLN YP ++ I
Sbjct: 160 HIDDVTPNKIYVVVLQDAVLVKKVIKKPNSNNVTLVSLNESYPPYEIKPFQI 211
>gi|117925374|ref|YP_865991.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp.
MC-1]
gi|171460783|sp|A0L9E2|LEXA_MAGSM RecName: Full=LexA repressor
gi|117609130|gb|ABK44585.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp.
MC-1]
Length = 231
Score = 38.4 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 106 SGVFPTGNKWNTVG--VPEIRSPHNGIYAIQTQDTRHKTQDTSM--LPLYRKGDILILNS 161
+ P N +G + + R+ +A+ K + SM ++ +GD +++
Sbjct: 111 AAGIPILAVENHIGELLMDSRTARGPCFAL-------KVKGDSMIDAEIF-EGDYVVVRH 162
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
GD +++ G+ K L +I+L N Y V
Sbjct: 163 QALAENGD-IVVAILDGEATVKRL-YISEETIELRPENRSYQPIVVPPG 209
>gi|15988320|pdb|1JHH|A Chain A, Lexa S119a Mutant
gi|15988321|pdb|1JHH|B Chain B, Lexa S119a Mutant
Length = 202
Score = 38.4 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + +M + GD+L ++ V G ++++ ++ K L + +
Sbjct: 107 PNADFLLRVSGMAMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|171463202|ref|YP_001797315.1| transcriptional repressor, LexA family [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192740|gb|ACB43701.1| transcriptional repressor, LexA family [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 239
Score = 38.4 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR-- 191
+ D K + SM GD L + +V GD ++ + V + +
Sbjct: 142 SADYLLKVKGMSMRDAGILDGDYLAVRKTTEVRNGDIVVARLDDEVTVKRWQQKKTANGI 201
Query: 192 SIDLMSLNCCYPV 204
I+L + N +
Sbjct: 202 VIELQAENPDFKN 214
>gi|331085163|ref|ZP_08334249.1| hypothetical protein HMPREF0987_00552 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407946|gb|EGG87436.1| hypothetical protein HMPREF0987_00552 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 209
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 144 DTSMLPLYRKGDILILN----SAIQVNCGDRLLIKPRTGD---IVAKVLISRRGRSIDLM 196
SM P+ GDI+++N D ++ +P + K ++ G +I L
Sbjct: 68 GDSMNPVLHNGDIVLVNRLIYDTSTPKRNDIIVFRPNGNENAHASIKRIVGLPGETIQLK 127
Query: 197 S----LNCCYPVDTVEMSDI 212
+N + + ++I
Sbjct: 128 DNAVYINGEKLKEDFQTTEI 147
>gi|212712857|ref|ZP_03320985.1| hypothetical protein PROVALCAL_03954 [Providencia alcalifaciens DSM
30120]
gi|212684549|gb|EEB44077.1| hypothetical protein PROVALCAL_03954 [Providencia alcalifaciens DSM
30120]
Length = 252
Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 4/141 (2%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
+ T + + LL + +G GF ++ FP + ++ +
Sbjct: 94 ASVAEHSPLITRNEHNTLRLLDIYAKAGPSGFMNNE-FP--DTIRSIEFSSEKVFELFGR 150
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
SM P D++ +++ + GD + + + K L +G+
Sbjct: 151 KSLKGIEMINITGDSMSPAINPRDVVFVDTHNEYFDGDGVYVFSFENALFIKRLQRVKGK 210
Query: 192 SIDLMSLNCCYPVDTVEMSDI 212
+ + S N Y +E S++
Sbjct: 211 KLAVKSDNSAYETFYIEESEM 231
>gi|313498878|gb|ADR60244.1| LexA repressor [Pseudomonas putida BIRD-1]
Length = 205
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ EIP+L +G+ P G + + E ++ +T D
Sbjct: 72 AEPLRRPEILEIPVLGQVAAGA---------PIGP---DLDIHEQLLLDPSLFR-RTPDY 118
Query: 139 RHKTQDTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
K + SM+ ++ GD++ + G ++ + G++ K L G + L+
Sbjct: 119 LLKVRGDSMIDDGIF-DGDLVGILQQADARDGQIVVARL-DGEVTIKRLQRL-GGTYRLL 175
Query: 197 SLNCCYPVDTVEMSD 211
N Y V+
Sbjct: 176 PRNPAYAPIDVQPEQ 190
>gi|117928571|ref|YP_873122.1| putative phage repressor [Acidothermus cellulolyticus 11B]
gi|117649034|gb|ABK53136.1| putative phage repressor [Acidothermus cellulolyticus 11B]
Length = 190
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 28/153 (18%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
++ +P+ + G F P W + A+
Sbjct: 32 VLPAPPPGQRFRPYVPIYDLAAAAGG--FSGTQIPEPLGW---------AKAPRYRAVDP 80
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--------RTGDIVAKVLIS 187
+ SM PL G + A + +++++ G K S
Sbjct: 81 FMFIARVVGRSMEPLIPDGAWCLFRRAQPGSRNNKIVLVQCRDFTDPETGGSYTVKRYRS 140
Query: 188 RRGRS---------IDLMSLNCCYPVDTVEMSD 211
+ R+ I L +N +P
Sbjct: 141 EKARTWDGSWRHTVIRLEPINPEFPPIVFRSGA 173
>gi|256380271|ref|YP_003103931.1| phage repressor [Actinosynnema mirum DSM 43827]
gi|255924574|gb|ACU40085.1| putative phage repressor [Actinosynnema mirum DSM 43827]
Length = 109
Score = 38.0 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDLMS 197
K + SM P R GD++ + GD +L++ R G + K + G +
Sbjct: 5 LKVRGPSMHPTVRTGDLVSVAHGRPPRAGDVVLVRWAHRPGQLSVKRAVRVDGTGWHVEG 64
Query: 198 LNC--CYPVDTVEMSDIEWIARI-LW 220
N + +++ + R +W
Sbjct: 65 DNPFASTDSRELGPAEVLGVVRFRVW 90
>gi|254509256|ref|ZP_05121350.1| LexA repressor [Vibrio parahaemolyticus 16]
gi|219547810|gb|EED24841.1| LexA repressor [Vibrio parahaemolyticus 16]
Length = 206
Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ D+ K L + G +
Sbjct: 111 PQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDG-QVVVARVDEDVTVKRLERK-GST 168
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L + N + V+++
Sbjct: 169 VLLHAENEEFEPIKVDLTS 187
>gi|254440112|ref|ZP_05053606.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
gi|198255558|gb|EDY79872.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
Length = 144
Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + + + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIDPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 82 RRVG-RAVLAVVDGAVTAKMLRKRDGRYF-LAPANGKESFPDIELTE 126
>gi|313124051|ref|YP_004034310.1| lexa repressor [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280614|gb|ADQ61333.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|325685931|gb|EGD27995.1| transcriptional repressor LexA [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 206
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
+ L T+ + L K K+IP++ +G + + +
Sbjct: 64 RALEITHAGLDAL-----------GIKPKDIPVIGVVTAGQ------PILAVQDVEDYFP 106
Query: 120 VP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
+P + S ++ + + TSM+ GD +I+ G+ ++
Sbjct: 107 LPPNLASDAGELFML-------RVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMTDD 159
Query: 178 GDIVAK 183
G+ K
Sbjct: 160 GEATVK 165
>gi|300811721|ref|ZP_07092195.1| repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497297|gb|EFK32345.1| repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 206
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
+ L T+ + L K K+IP++ +G + + +
Sbjct: 64 RALEITHAGLDAL-----------GIKPKDIPVIGVVTAGQ------PILAVQDVEDYFP 106
Query: 120 VP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
+P + S ++ + + TSM+ GD +I+ G+ ++
Sbjct: 107 LPPNLASDAGELFML-------RVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMTDD 159
Query: 178 GDIVAK 183
G+ K
Sbjct: 160 GEATVK 165
>gi|257468521|ref|ZP_05632615.1| LexA repressor [Fusobacterium ulcerans ATCC 49185]
gi|317062781|ref|ZP_07927266.1| LexA repressor [Fusobacterium ulcerans ATCC 49185]
gi|313688457|gb|EFS25292.1| LexA repressor [Fusobacterium ulcerans ATCC 49185]
Length = 212
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ SM P G+ ++++ C ++ + + K++ I L
Sbjct: 117 DSFLIEVSGDSMEPTILDGEFVLVDPTRTEICEGKIYVITYNNETYIKMIEKHEEDEIVL 176
Query: 196 M-SLNCCYPVDTVEMSDIE 213
+ S+N Y ++ + E
Sbjct: 177 LKSVNQKYRDKVIKKEEFE 195
>gi|226328528|ref|ZP_03804046.1| hypothetical protein PROPEN_02422 [Proteus penneri ATCC 35198]
gi|225203261|gb|EEG85615.1| hypothetical protein PROPEN_02422 [Proteus penneri ATCC 35198]
Length = 239
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 111 TGNKWNTVGVPEIRS----PHNGIYAIQTQDTR-----HKTQDTSMLPLYRKGDILILNS 161
GN + PE+ P +Y + + SM P D+L +++
Sbjct: 108 AGNGYVNNPFPEVVRSIEIPQERVYELFGRSNLDGVMIINVDGDSMTPTLNPKDLLFIDT 167
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
I GD + I K L +GR + ++S N YP ++ +I
Sbjct: 168 KINQFNGDGIYIFNFEDSTFIKRLQRVKGRKLAVISDNDFYPPFFIDDHEI 218
>gi|146341049|ref|YP_001206097.1| LexA repressor [Bradyrhizobium sp. ORS278]
gi|166224556|sp|A4YVE6|LEXA_BRASO RecName: Full=LexA repressor
gi|146193855|emb|CAL77872.1| SOS response transcriptional repressor, lexA [Bradyrhizobium sp.
ORS278]
Length = 232
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP + YA++ + SM+ GD+ ++ + GD ++
Sbjct: 131 TISVPADMLGNGDHYALE-------VRGDSMVDAGILDGDMALIQRNETADTGDIVVALI 183
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 184 DDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRV 219
>gi|104774235|ref|YP_619215.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116514323|ref|YP_813229.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|122274945|sp|Q049T1|LEXA_LACDB RecName: Full=LexA repressor
gi|123378419|sp|Q1G9M5|LEXA_LACDA RecName: Full=LexA repressor
gi|103423316|emb|CAI98157.1| LexA (transcriptional repressor of the SOS regulon) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093638|gb|ABJ58791.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325126020|gb|ADY85350.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 206
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
+ L T+ + L K K+IP++ +G + + +
Sbjct: 64 RALEITHAGLDAL-----------GIKPKDIPVIGVVTAGQ------PILAVQDVEDYFP 106
Query: 120 VP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
+P + S ++ + + TSM+ GD +I+ G+ ++
Sbjct: 107 LPPNLASDAGELFML-------RVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMTDD 159
Query: 178 GDIVAK 183
G+ K
Sbjct: 160 GEATVK 165
>gi|163758692|ref|ZP_02165779.1| peptidase, S24 (LexA) family protein [Hoeflea phototrophica DFL-43]
gi|162283982|gb|EDQ34266.1| peptidase, S24 (LexA) family protein [Hoeflea phototrophica DFL-43]
Length = 229
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 144 DTSMLPLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P GDIL+L + + V + + G ++ K L I + S N
Sbjct: 139 GDSMEPTIADGDILLLDFSISSSVVSDGGVFVISVDGALLVKRLQLTVDGHILIRSDNDL 198
Query: 202 YP----VDTVEMSDIEWIARILWA 221
Y I A+++WA
Sbjct: 199 YEQEKVTREFADERITVHAKVVWA 222
>gi|217973784|ref|YP_002358535.1| putative phage repressor [Shewanella baltica OS223]
gi|217498919|gb|ACK47112.1| putative phage repressor [Shewanella baltica OS223]
Length = 243
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SMLP+ R G + ++++ + + G + K+L G I
Sbjct: 144 PQHAACVTVSGNSMLPVLRHGTTVGVDTSKKSIIDGEMYAIDHDGMLRVKMLYRTPGGGI 203
Query: 194 DLMSL-NCCYPVDTVEMSDIEWIARILWA 221
+ S N +P + ++ + I I W
Sbjct: 204 RIKSYNNDEFPDEFIQPDKVSEIKIIGWV 232
>gi|323498070|ref|ZP_08103076.1| LexA repressor [Vibrio sinaloensis DSM 21326]
gi|323316878|gb|EGA69883.1| LexA repressor [Vibrio sinaloensis DSM 21326]
Length = 206
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ D+ K L + G +
Sbjct: 111 PQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDG-QVVVARVDEDVTVKRLERK-GST 168
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L + N + V+++
Sbjct: 169 VLLHAENEEFEPIKVDLTS 187
>gi|144898408|emb|CAM75272.1| Peptidase S24, LexA repressor [Magnetospirillum gryphiswaldense
MSR-1]
Length = 236
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
N+V VP YA+ + SM GD +I+ S G ++
Sbjct: 134 NSVEVPAALLTGGDHYAL-------TVEGDSMIEAGILDGDTVIIRSCDTAEAGTIVVAL 186
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ K L + SI L N Y ++ R++
Sbjct: 187 VDDQEATLKRLRRKGA-SIALEPANKAYETRIFPPDRVKVQGRLV 230
>gi|6900347|emb|CAB71959.1| putative regulatory protein [Neisseria meningitidis]
Length = 249
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N A D L + + K + G+ + + S N
Sbjct: 161 IAVKGDSMEGVLNHGDNILVNHAETTPR-DGLYVIRIDNHLFVKQIQKLPGKLL-VKSAN 218
Query: 200 CCYPVDTVEMSD----IEWIARILW 220
Y ++++D + I R+ W
Sbjct: 219 PVYEPFEIDLTDDNQNVAIIGRVEW 243
>gi|218768655|ref|YP_002343167.1| putative regulator [Neisseria meningitidis Z2491]
gi|304386903|ref|ZP_07369164.1| transcriptional regulator [Neisseria meningitidis ATCC 13091]
gi|121052663|emb|CAM09003.1| putative regulator [Neisseria meningitidis Z2491]
gi|304339008|gb|EFM05101.1| transcriptional regulator [Neisseria meningitidis ATCC 13091]
gi|319410887|emb|CBY91280.1| putative transcriptional regulator [Neisseria meningitidis WUE
2594]
Length = 234
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM + GD +++N A D L + + K + G+ + + S N
Sbjct: 146 IAVKGDSMEGVLNHGDNILVNHAETTPR-DGLYVIRIDNHLFVKQIQKLPGKLL-VKSAN 203
Query: 200 CCYPVDTVEMSD----IEWIARILW 220
Y ++++D + I R+ W
Sbjct: 204 PVYEPFEIDLTDDNQNVAIIGRVEW 228
>gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020]
Length = 233
Score = 38.0 bits (87), Expect = 0.91, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 111 TGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSML-------PLYRKGDILILNSA 162
W P+ + Y + + + SM P +G +++++
Sbjct: 115 AAGAWAEAVEPDFSDRYETSDYKAKGRAFWLEVSGDSMTAPSGMSVP---EGMLILVDPG 171
Query: 163 IQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCY 202
++ G ++ K P + + K LI + L LN Y
Sbjct: 172 VEARPGKLVVAKLPSSNEATFKKLID-DAGQLYLKPLNPGY 211
>gi|320201046|gb|EFW75630.1| hypothetical protein ECoL_01754 [Escherichia coli EC4100B]
Length = 119
Score = 38.0 bits (87), Expect = 0.91, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 136 QDTRHKTQDTSM-LPL---YRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRG 190
+ SM P +G I++++ ++ G ++ K + K L+ G
Sbjct: 25 DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDAG 84
Query: 191 RSIDLMSLNCCYP 203
R L LN YP
Sbjct: 85 RRF-LKPLNPQYP 96
>gi|327197613|ref|YP_004301304.1| gp28 [Brochothrix phage NF5]
gi|296245436|gb|ADH03050.1| gp28 [Brochothrix phage NF5]
Length = 232
Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID- 194
D Q SM PL G I+ +V G+ ++ + K + +I
Sbjct: 147 ADCALVIQGDSMEPLLHDGSIVFYKQQCEVENGEIAILDIDGNGVTCKKVYFNYDDNIVI 206
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
L SLN Y + + I +++
Sbjct: 207 LKSLNSKYDDRELSPERVRVIGKVV 231
>gi|268608967|ref|ZP_06142694.1| XRE family transcriptional regulator [Ruminococcus flavefaciens
FD-1]
Length = 324
Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
W + V + + +A++ + SM P Y GDI+ + +V G ++ +
Sbjct: 226 WKAIEVVDTAEARHADFAVE-------VEGRSMEPDYYDGDIVYIELTSEVPIG-QVGLF 277
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+ G K + ++S N Y + DIE R++
Sbjct: 278 IQNGKGYIKE-----AGNGCIISRNPEYDDISPADGDIECKGRVI 317
>gi|71899997|ref|ZP_00682142.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1]
gi|71730207|gb|EAO32293.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1]
Length = 211
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 22/153 (14%)
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGV 120
A + L ++ + K +P+L +G P G + V +
Sbjct: 61 QARGIRLKHLTEVDEAALALQSKDVLRLPVLGRVAAGQ---------PIGADIGEDRVVL 111
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+ ++ D + Q SM ++ GD++ ++ + G ++++
Sbjct: 112 LDR------VFFSPAPDYLLRVQGDSMRDEGIF-DGDLIGVHRTQDAHSG-QIVVARIDD 163
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+I K L+ I L+ N + V
Sbjct: 164 EITVK-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195
>gi|148255849|ref|YP_001240434.1| LexA repressor [Bradyrhizobium sp. BTAi1]
gi|166224555|sp|A5EK34|LEXA_BRASB RecName: Full=LexA repressor
gi|146408022|gb|ABQ36528.1| SOS-response transcriptional repressor, LexA [Bradyrhizobium sp.
BTAi1]
Length = 232
Score = 38.0 bits (87), Expect = 0.94, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP + YA++ + SM+ GD+ ++ + GD ++
Sbjct: 131 TISVPADMLGNGDHYALE-------VRGDSMVDAGILDGDMALIQRNETADTGDIVVALI 183
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 184 DDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRV 219
>gi|310778853|ref|YP_003967186.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
gi|309748176|gb|ADO82838.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
Length = 226
Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 26/78 (33%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ SM P +GD +++ ++ + + + K + + L
Sbjct: 132 NSFLVEVAGDSMTPEINEGDFALVDPMENDYISGKVYVVTYGDETLIKKIECPAENIVVL 191
Query: 196 MSLNCCYPVDTVEMSDIE 213
S N YP + IE
Sbjct: 192 KSYNAKYPDKYIMDEQIE 209
>gi|288941562|ref|YP_003443802.1| putative phage repressor [Allochromatium vinosum DSM 180]
gi|288896934|gb|ADC62770.1| putative phage repressor [Allochromatium vinosum DSM 180]
Length = 119
Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-----LIKPRTGDIVA 182
G + + M P + G I+I+ DR + G
Sbjct: 8 EGTGCALHEPFALRVLGDEMDPEFPDGCIIIIEPN------DRCPNPSYIFVEVEGVRWF 61
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
+ L++LN YP ++++ +EW
Sbjct: 62 RQYRRDADGRERLVALNPLYPE--IDLTGLEW 91
>gi|269127887|ref|YP_003301257.1| putative phage repressor [Thermomonospora curvata DSM 43183]
gi|268312845|gb|ACY99219.1| putative phage repressor [Thermomonospora curvata DSM 43183]
Length = 110
Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 141 KTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDLMS 197
+ SMLP R GD L++ V GD ++ + R G ++ K + R L S
Sbjct: 6 EVSGESMLPALRPGDWLLVRRRGRPVAAGDVVVARHPRRAGLLIVKRAVRRTAEGWWLES 65
Query: 198 LNCCYPVDT 206
N
Sbjct: 66 DNQRAAGRQ 74
>gi|330974358|gb|EGH74424.1| prophage PSPPH03, Cro/CI family transcriptional regulator
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 290
Score = 38.0 bits (87), Expect = 0.96, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + D L+++ ++ GD + + + K L + ++S N +
Sbjct: 207 GQSMAPTIKDRDPLLVDVTVREFTGDGIYLFSYDEMLYVKRLQKKGKDRFKMISDNKHHD 266
Query: 204 VDTVEMSDIEWIARI--LWASQ 223
+ + + D +AR+ +W Q
Sbjct: 267 PEDIRVDDTHILARVIYVWNGQ 288
>gi|220930677|ref|YP_002507586.1| XRE family transcriptional regulator [Clostridium cellulolyticum
H10]
gi|220001005|gb|ACL77606.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
H10]
Length = 281
Score = 38.0 bits (87), Expect = 0.96, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
+P+L +G F + + I H Y + + SM
Sbjct: 155 VPVLGLIRAGQPAFAEEN----NEGYYPTDRQFISDDHEYFY--------LRIKGDSMDK 202
Query: 150 LYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
+++G ++++ + G+ +++ V KV I ++ S N + T +
Sbjct: 203 EFKEGSLVLVQIQSTLESGEIGVVLINGFDATVKKVFIRDNLITLMPQSNNEDHQPQTYD 262
Query: 209 M--SDIEWIARILWA 221
+I+ + +++ A
Sbjct: 263 TVKEEIKILGKVVLA 277
>gi|293606137|ref|ZP_06688502.1| LexA repressor [Achromobacter piechaudii ATCC 43553]
gi|292815592|gb|EFF74708.1| LexA repressor [Achromobacter piechaudii ATCC 43553]
Length = 230
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 134 QTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
Q D K + SM R GD+L + A + G ++ + D+ K L
Sbjct: 136 QAPDYLLKVRGMSM----RDAGILEGDLLAVKKASEARNGQIVVARLGD-DVTVKRLQR- 189
Query: 189 RGRSIDLMSLNCCYPVDTVEMSD 211
I+L+ N + VE
Sbjct: 190 TNGHIELLPENPDFQTIVVEADQ 212
>gi|162149420|ref|YP_001603881.1| protease [Gluconacetobacter diazotrophicus PAl 5]
gi|161787997|emb|CAP57601.1| putative protease [Gluconacetobacter diazotrophicus PAl 5]
Length = 254
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI----SRRGRSIDL 195
+ SM P Y+ G+ +++++A + + + +V K L S S+ +
Sbjct: 165 LRVAGDSMEPDYQAGERVLVDTAHRTPSPPGVYVLWDGFGLVLKRLEIVYGSEDPVSVQI 224
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL--WA 221
MS+N YP T + ++ R++ W
Sbjct: 225 MSINPGYPTYTRALDEVHINGRVVGKWV 252
>gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661]
gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661]
Length = 229
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM GD++ ++ ++ GD + + GD+ K L + +
Sbjct: 131 EAIVKLINVRGDSMEGTIEPGDLIFVDVSVPFFDGDGIYVFDFNGDMFVKRLQKVKSE-L 189
Query: 194 DLMSLNCCYPVDTVEMSDIEWIA---RILWASQ 223
++S N Y T+ ++ + R++ SQ
Sbjct: 190 YVISDNPRYKEWTISAEEMAMLHVAGRVM-LSQ 221
>gi|300714896|ref|YP_003739699.1| LexA repressor [Erwinia billingiae Eb661]
gi|299060732|emb|CAX57839.1| LexA repressor [Erwinia billingiae Eb661]
Length = 202
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PGADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMS 210
+ L+ N + V++
Sbjct: 165 VHLLPENGEFQPIVVDLR 182
>gi|254521402|ref|ZP_05133457.1| SOS-response transcriptional repressor [Stenotrophomonas sp. SKA14]
gi|219718993|gb|EED37518.1| SOS-response transcriptional repressor [Stenotrophomonas sp. SKA14]
Length = 160
Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
GDIL+++ ++ GD ++ KVL ++L S N +P +E S
Sbjct: 79 DGDILVVDRSVTPQGGDLVIAIWDGNQPTCKVLQ-LFESHMELHSANPDFPPIVLEQS 135
>gi|124027788|ref|YP_001013108.1| signal peptide [Hyperthermus butylicus DSM 5456]
gi|123978482|gb|ABM80763.1| predicted signal peptide [Hyperthermus butylicus DSM 5456]
Length = 149
Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISR 188
YA+ + +SMLP GDI+I++ + GD ++ + G++V ++
Sbjct: 18 YALNVSTPFVVVEGSSMLPSLYTGDIVIIHKPSPDKIKIGDIIVYRSLRGNLVIHRVVEV 77
Query: 189 R 189
Sbjct: 78 T 78
>gi|330861945|emb|CBX72114.1| lexA repressor [Yersinia enterocolitica W22703]
Length = 133
Score = 38.0 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 38 PSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 95
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 96 VQLLPENSEFQPIVVDLRE 114
>gi|289165200|ref|YP_003455338.1| SOS (Error prone) mutagenesis protein UmuD [Legionella longbeachae
NSW150]
gi|288858373|emb|CBJ12241.1| putative SOS (Error prone) mutagenesis protein UmuD [Legionella
longbeachae NSW150]
Length = 168
Score = 38.0 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 13/148 (8%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------HNG 129
+ K +P+ + P + G P +
Sbjct: 12 GRPKGEPTKTVRLPVSLLAELEQLKERPNYQLPIFSSKVQAGFPSPADDYIEGYLDLNTK 71
Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
+ + SM GD L+++ +I+ G R++I G++ K L +
Sbjct: 72 FIKHPSATFVLQVMGDSMVEAGIFSGDWLLVDRSIEATDG-RIVIAAVNGELTVKRLSKK 130
Query: 189 RGRSIDLMSLNCCYPVDTV--EMSDIEW 214
G+ I L+ N + + + + W
Sbjct: 131 EGK-IQLLPANPKFKPIDITQDCEMVVW 157
>gi|329848451|ref|ZP_08263479.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
gi|328843514|gb|EGF93083.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
Length = 208
Score = 38.0 bits (87), Expect = 1.00, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
G Y+ + + D SM P G+ + + + +++ G ++ ++ +
Sbjct: 115 GAYSDFAALLKQQVIDESMSPWVEPGEWVWYQQGLHPRRSEGCVVELVDGTLLVRLYLRE 174
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
+ + L +N + SD++ I ++
Sbjct: 175 KDGYVFLQRINPESVEQYL-HSDVKAIHKV 203
>gi|119898355|ref|YP_933568.1| LexA repressor [Azoarcus sp. BH72]
gi|166224552|sp|A1K776|LEXA_AZOSB RecName: Full=LexA repressor
gi|119670768|emb|CAL94681.1| repressor LexA [Azoarcus sp. BH72]
Length = 202
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 20/159 (12%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNK 114
E+ + LAA + L R E +PL+ +G+ + +
Sbjct: 48 ETHLRALAAKGAIL-----LEEGRARGIRLAEALGLPLVGRVAAGN------PILAAEHV 96
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ Y ++ + + GD++ ++ + + G ++++
Sbjct: 97 EARIQFDPALFSPRADYLLRVRGMSMRDAG------ILDGDLIAVHRSHEARNG-QVVVA 149
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
D+ K L R G ++L+ N + V+
Sbjct: 150 RIDDDVTVKTL-RRNGPIVELLPANPDFDPIVVDTRSAA 187
>gi|254490799|ref|ZP_05103982.1| LexA repressor [Methylophaga thiooxidans DMS010]
gi|224463971|gb|EEF80237.1| LexA repressor [Methylophaga thiooxydans DMS010]
Length = 202
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 140 HKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
K SM GD +++ S GD ++ D K L+ ++ LM
Sbjct: 115 LKVNGDSMIDKAIMSGDYVVVQSQSTARHGDIVVALVDGFDATLKTLLLNDDGTVTLMPA 174
Query: 199 NCCYPVDTVEMSDI 212
N Y T+ +
Sbjct: 175 NSHYEAVTLPADRV 188
>gi|86139835|ref|ZP_01058401.1| umuD protein [Roseobacter sp. MED193]
gi|85823464|gb|EAQ43673.1| umuD protein [Roseobacter sp. MED193]
Length = 144
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + T + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIDPIAWVVRHPTSTFWWRVEGDCLWDVGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R G+ L N +E+++
Sbjct: 82 RRLG-RAVLAVVDGTVTAKILRKRDGKYF-LSPANSQEAFPDIELTE 126
>gi|302059723|ref|ZP_07251264.1| LexA repressor [Pseudomonas syringae pv. tomato K40]
gi|302134131|ref|ZP_07260121.1| LexA repressor [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 205
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ R + + EIP+L +G+ P
Sbjct: 44 SVARKHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRVAAGA---------P 94
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 95 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 150
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L R G + L+ N Y V
Sbjct: 151 IVVARL-EGEVTIKRLQHR-GDQLHLLPRNPAYQPIIVTPDQ 190
>gi|260596932|ref|YP_003209503.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
gi|260216109|emb|CBA28883.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
Length = 118
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
++ + SM GD++ ++ + V GD + + GD+ K L + + I
Sbjct: 20 ESSVKLINVRGDSMEGTIEPGDLIFVDVGVSVFDGDGIYVFNFNGDMFVKRLQKVKSQLI 79
Query: 194 DLMSLNCCYPVDTVEMSDI 212
++S N Y T+ ++
Sbjct: 80 -VISDNPRYREWTISEEEM 97
>gi|259416048|ref|ZP_05739968.1| prophage transcriptional regulator [Silicibacter sp. TrichCH4B]
gi|259347487|gb|EEW59264.1| prophage transcriptional regulator [Silicibacter sp. TrichCH4B]
Length = 217
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 140 HKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ SM P GD+++++ + ++ G ++ +G++ K + G +I L+S
Sbjct: 129 ISVRGDSMEPDLNDGDLVLIDLANTDLSDG-KIYAVQYSGNLFVKRIQYVPGDTIRLVSR 187
Query: 199 NCCYPVDTVEMSDIE 213
N Y ++ + +
Sbjct: 188 NAQYAPIEIKTPEAD 202
>gi|314966772|gb|EFT10871.1| LexA DNA binding domain protein [Propionibacterium acnes HL082PA2]
gi|314981107|gb|EFT25201.1| LexA DNA binding domain protein [Propionibacterium acnes HL110PA3]
gi|315091933|gb|EFT63909.1| LexA DNA binding domain protein [Propionibacterium acnes HL110PA4]
gi|315103434|gb|EFT75410.1| LexA DNA binding domain protein [Propionibacterium acnes HL050PA2]
gi|327327598|gb|EGE69374.1| LexA repressor [Propionibacterium acnes HL103PA1]
Length = 224
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 112 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPNIHSGDLVVVRRISVSDLPDDPPET 171
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 172 --YLVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 213
>gi|296283865|ref|ZP_06861863.1| LexA repressor [Citromicrobium bathyomarinum JL354]
Length = 228
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 20/164 (12%)
Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-------SGVFPT 111
+ L + + +P P + + D + P
Sbjct: 61 ARALEVLKMPESAVAGSAPKAANDLGARTTSVP-ARMPEAAND-VIDIPLHGRIAAGAPI 118
Query: 112 GNKWN--TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
+ ++ VP +A++ SM GD ++ A G
Sbjct: 119 EALEDHQSLPVPAALLGPGEHFALE-------VSGDSMIEAGIFDGDYALIRRADTARDG 171
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
D ++ + K L GR + L N Y + +
Sbjct: 172 DIVVALVENEEATLKYLWREGGR-VRLDPANPSYEPQVYDARAV 214
>gi|282854029|ref|ZP_06263366.1| LexA DNA binding domain protein [Propionibacterium acnes J139]
gi|282583482|gb|EFB88862.1| LexA DNA binding domain protein [Propionibacterium acnes J139]
Length = 227
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 115 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPNIHSGDLVVVRRISVSDLPDDPPET 174
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 175 --YLVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 216
>gi|166031983|ref|ZP_02234812.1| hypothetical protein DORFOR_01685 [Dorea formicigenerans ATCC
27755]
gi|166028436|gb|EDR47193.1| hypothetical protein DORFOR_01685 [Dorea formicigenerans ATCC
27755]
Length = 235
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 137 DTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGDIVAKVLIS---RR 189
R SM P+ GDI+ I+ +A + GD ++ KP+ + +
Sbjct: 87 GQRVSVVGDSMKPVLENGDIVLANRIVYNASKPKRGDVIIFKPKGNENSHYYIKRIIALP 146
Query: 190 GRSIDL 195
G S+++
Sbjct: 147 GESVEI 152
>gi|110834444|ref|YP_693303.1| LexA repressor [Alcanivorax borkumensis SK2]
gi|110647555|emb|CAL17031.1| LexA repressor [Alcanivorax borkumensis SK2]
Length = 163
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 106 SGVFPT---GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM--LPLYRKGDILILN 160
S FP+ G + + + H + + SM +Y GDILI++
Sbjct: 39 SAGFPSPAQGYLDEHLDLNRLCIRH------PASTFLLRVEGDSMVDAGIY-SGDILIVD 91
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
+++ GD +++ G+ K L L N Y
Sbjct: 92 RSLEAVAGD-VVVASLEGEFTVKELQLLPVPM--LKPRNAAYAP 132
>gi|302751894|gb|ADL66071.1| phage transcriptional regulator [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 242
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 156 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 213
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 214 LTLVSLNKKYKDLHF 228
>gi|284025046|ref|ZP_06379444.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
132]
Length = 235
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 149 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 206
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 207 LTLVSLNKKYKDLHF 221
>gi|221140342|ref|ZP_03564835.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|296277216|ref|ZP_06859723.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
MR1]
gi|302333665|gb|ADL23858.1| phage transcriptional regulator [Staphylococcus aureus subsp.
aureus JKD6159]
gi|329314675|gb|AEB89088.1| Phage transcriptional regulator [Staphylococcus aureus subsp.
aureus T0131]
Length = 235
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 149 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 206
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 207 LTLVSLNKKYKDLHF 221
>gi|9635682|ref|NP_061595.1| repressor [Staphylococcus prophage phiPV83]
gi|8918752|dbj|BAA97812.1| repressor [Staphylococcus prophage phiPV83]
gi|298694365|gb|ADI97587.1| putative phage repressor [Staphylococcus aureus subsp. aureus
ED133]
Length = 236
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 150 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 207
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 208 LTLVSLNKKYKDLHF 222
>gi|302558470|ref|ZP_07310812.1| signal peptidase [Streptomyces griseoflavus Tu4000]
gi|302476088|gb|EFL39181.1| signal peptidase [Streptomyces griseoflavus Tu4000]
Length = 144
Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ A + SM+P GD L+++ +V GD ++++
Sbjct: 2 PELSQDAERARA-PLPFGVAEVTGPSMVPTLHHGDRLLVHYGARVKRGDVIVLR 54
>gi|332969767|gb|EGK08779.1| signal peptidase I LepB [Desmospora sp. 8437]
Length = 154
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV-AKVLISRR 189
+ + ++ SM P G++ ++ + GD + + + K +I+
Sbjct: 21 FVFDSFYAYYRVNGDSMAPALHDGEVYRVSKRESIQRGDVIAFRSDQESLTYIKRVIALP 80
Query: 190 GRSIDLMS 197
G + +
Sbjct: 81 GERVAIRG 88
>gi|330875013|gb|EGH09162.1| LexA repressor [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330963587|gb|EGH63847.1| LexA repressor [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 202
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ R + + EIP+L +G+ P
Sbjct: 41 SVARKHIVALTEAGLIEVVAHQARGIRLLNTEPRPELLEIPVLGRVAAGA---------P 91
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 92 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 147
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L R G + L+ N Y V
Sbjct: 148 IVVARL-DGEVTIKRLQHR-GDQLHLLPRNPAYQPIIVTPDQ 187
>gi|260551416|ref|ZP_05825616.1| merops peptidase family S24 [Acinetobacter sp. RUH2624]
gi|260405579|gb|EEW99071.1| merops peptidase family S24 [Acinetobacter sp. RUH2624]
Length = 240
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVA---KVLISRR 189
SM P + GD + +N V D +++ G+ A K++I
Sbjct: 147 NGYGLIVTGYSMYPKFEPGDRIYVNPDYPVFDLKTNDLVIV-ACEGESEATFKKLIIEGN 205
Query: 190 GRSIDLMSLNCCYPVDTVEMSD-------IEWIAR 217
+ ++ LN +P +++++ + + R
Sbjct: 206 EKYLE--PLNSKWPEQIIKLTEGCKLVGKVVGMHR 238
>gi|301300653|ref|ZP_07206842.1| peptidase S24-like protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851761|gb|EFK79456.1| peptidase S24-like protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 258
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
D + SM P + G I+ +N +V ++ + V K++
Sbjct: 168 PAHDFALRVNGDSMTPTFSDGQIIYVNKIYDTDEVRNNQFVIAELNGNSYVKKIVFDNNR 227
Query: 191 RSIDLMSLNCCYPVDTVEMSD 211
+ L+SLN Y V D
Sbjct: 228 KDCQLISLNKEYNPINVTKDD 248
>gi|86749926|ref|YP_486422.1| LexA repressor [Rhodopseudomonas palustris HaA2]
gi|123292537|sp|Q2IW99|LEXA_RHOP2 RecName: Full=LexA repressor
gi|86572954|gb|ABD07511.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
palustris HaA2]
Length = 234
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM+ GD+ ++ + GD ++
Sbjct: 133 TISVPPDMLGSGEHYALE-------VRGDSMMDAGILDGDMALIQRNESADTGDIVVALI 185
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 186 DEEEATLKRFRRRGA-SIALEPANSAYEVRILPPNRV 221
>gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206]
gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206]
Length = 216
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 136 QDTRHKTQDTSM-LPL---YRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRG 190
+ SM P +G I++++ ++ G ++ K + K L+ G
Sbjct: 122 DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDAG 181
Query: 191 RSIDLMSLNCCYP 203
R L LN YP
Sbjct: 182 RRF-LKPLNPQYP 193
>gi|225869607|ref|YP_002745554.1| phage repressor protein [Streptococcus equi subsp. equi 4047]
gi|225699011|emb|CAW92101.1| phage repressor protein [Streptococcus equi subsp. equi 4047]
Length = 248
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
DT K SM PL + D+L + + QVN D + I G K L +
Sbjct: 157 DEYDTIAKVAGDSMEPLIQDNDLLFIKVSSQVNMND-IGIFQVNGKNFVKKLKRDYDGAW 215
Query: 194 DLMSLNCCYPVDTVEMSD 211
L SLN Y + D
Sbjct: 216 YLQSLNNSYEEIYLSEDD 233
>gi|254450365|ref|ZP_05063802.1| SOS-response transcriptional repressor [Octadecabacter antarcticus
238]
gi|198264771|gb|EDY89041.1| SOS-response transcriptional repressor [Octadecabacter antarcticus
238]
Length = 144
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + + + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIDPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 82 RRVG-RAVLAVVEGAVTAKMLRKRDGRYF-LAPANSKESFPDIELTE 126
>gi|71065549|ref|YP_264276.1| S24 family peptidase [Psychrobacter arcticus 273-4]
gi|71038534|gb|AAZ18842.1| merops peptidase family S24 [Psychrobacter arcticus 273-4]
Length = 239
Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRT--GDIVAKVLIS 187
+ + Q SM P ++ +I+ + I GD ++I ++++
Sbjct: 140 LSKRAFGLIIQGRSMWPEFKPDEIIYVEPEIAPWDLKDGDLVVIHCNDDKQATFKQLIMG 199
Query: 188 RRGRSIDLMSLNCCYPV-DTVEMSD 211
+ L LN +P V M +
Sbjct: 200 NGPEDMYLKPLNPDWPDQKIVPMGE 224
>gi|314922996|gb|EFS86827.1| LexA DNA binding domain protein [Propionibacterium acnes HL001PA1]
Length = 224
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 112 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPNIHSGDLVVVRRISVSDLPDDPPET 171
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 172 --YLVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 213
>gi|163803931|ref|ZP_02197765.1| repressor protein c2 [Vibrio sp. AND4]
gi|159172268|gb|EDP57162.1| repressor protein c2 [Vibrio sp. AND4]
Length = 226
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 53/201 (26%)
Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
W +D + + S L RK G R + + STES K
Sbjct: 47 WPIVDGFCKLFGWSLSDLERKLG----------RTVSNEKPQ-VSTESPRK--------- 86
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
+ +EIP++ + +G W E +
Sbjct: 87 ----------RHVSSAIGREIPIVSWVNAG--------------GWAESPCIESYNQEKQ 122
Query: 130 IYA--IQTQDTRHKTQDTSML-----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181
+ SM + G ++++N I+ GD ++ + T +
Sbjct: 123 FVTGKMPKNTFGLVVSGNSMENCEMKETFPNGSLILVNPDIEPEIGDYVVAVDEVTQEAT 182
Query: 182 AKVLISRRGRSIDLMSLNCCY 202
K L+ G+ + L+ LN Y
Sbjct: 183 FKQLLEDCGKKM-LVPLNSQY 202
>gi|303324865|pdb|3JSO|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
gi|303324866|pdb|3JSO|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
gi|303324869|pdb|3JSP|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
gi|303324870|pdb|3JSP|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
gi|303324897|pdb|3K3R|E Chain E, Unrefined Crystal Structure Of A Lexa-Dna Complex
gi|303324898|pdb|3K3R|F Chain F, Unrefined Crystal Structure Of A Lexa-Dna Complex
Length = 202
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ L + +
Sbjct: 107 PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNG-QVVVARIDDEVTVARLKKQGNK- 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L+ N + V++
Sbjct: 165 VELLPENSEFKPIVVDLRQ 183
>gi|260911931|ref|ZP_05918496.1| SOS mutagenesis and repair protein UmuD [Prevotella sp. oral taxon
472 str. F0295]
gi|260633954|gb|EEX52079.1| SOS mutagenesis and repair protein UmuD [Prevotella sp. oral taxon
472 str. F0295]
Length = 146
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
FP+ + E + + + + SM GDI +++ +++
Sbjct: 25 AGFPSPA---EDYLHETLDFNRDLIRNPEATFYGRVEGDSMIEAGICDGDIAVIDRSLEP 81
Query: 166 NCGDRLLIKPRTGDIVAKVLI--SRRGRSIDLMSLNCCY-PVDTVEMSDIEWIARILW 220
GD +++ + K L R I+L N + P+ E E ++W
Sbjct: 82 RDGD-VVVGYINEEFTIKYLDLCHREEGYIELRPANPNFCPIRIDEDDSFEVWGVVIW 138
>gi|301155562|emb|CBW15030.1| DNA-binding transcriptional repressor of SOS regulon [Haemophilus
parainfluenzae T3T1]
Length = 208
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 30/141 (21%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQ- 136
D +++E+ +PL+ +G P + H G Y +
Sbjct: 70 DDSANDEEEEGLPLIGRVAAGE--------------------PILAEQHIEGTYRVDANM 109
Query: 137 -----DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
D K SM + GD+L ++S V G ++++ ++ K L + G
Sbjct: 110 FKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNG-QIVVARIEDEVTVKRLERK-G 167
Query: 191 RSIDLMSLNCCYPVDTVEMSD 211
I L + N + V + +
Sbjct: 168 SVIYLHAENEEFQPIVVNLEE 188
>gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99]
gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99]
Length = 184
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
H I ++ + ++ L+ LA++AG+ ++ + ++ + PS S+ K+L+
Sbjct: 2 HLDIGASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSVS-----PSVNSLKKVLSGL 56
Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
+ ++ + + + + LL
Sbjct: 57 SLSLVDFFSMEGNTQSEAKVVYRSDDLLDIGDGNLD 92
>gi|146306618|ref|YP_001187083.1| LexA repressor [Pseudomonas mendocina ymp]
gi|166224641|sp|A4XSN5|LEXA_PSEMY RecName: Full=LexA repressor
gi|145574819|gb|ABP84351.1| SOS-response transcriptional repressor, LexA [Pseudomonas mendocina
ymp]
Length = 204
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 14/137 (10%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-------NGIYAIQT 135
T + I + F P + + P G P + H N +
Sbjct: 59 TPGASRGIRIPGFEPGAAN---EDEGLPV-IGRVAAGAPILAQQHVEESCQINPAFFHPK 114
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D + + SM + GD+L +++ + G ++ + ++ K + +
Sbjct: 115 ADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNGQIVVARLDD-EVTVKRFKREGNK-VW 172
Query: 195 LMSLNCCYPVDTVEMSD 211
L++ N + V++
Sbjct: 173 LIAENPEFAPIEVDLEQ 189
>gi|90423954|ref|YP_532324.1| LexA repressor [Rhodopseudomonas palustris BisB18]
gi|123089654|sp|Q215D1|LEXA_RHOPB RecName: Full=LexA repressor
gi|90105968|gb|ABD88005.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
palustris BisB18]
Length = 237
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
T+ +P YA++ + SM+ GD+ ++ + GD ++
Sbjct: 136 TISMPADMLGSGEHYALE-------VRGDSMVDAGILDGDMALIQKNDSADTGDIVVALI 188
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 189 DEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRV 224
>gi|29829529|ref|NP_824163.1| signal peptidase protein [Streptomyces avermitilis MA-4680]
gi|29606637|dbj|BAC70698.1| putative signal peptidase protein [Streptomyces avermitilis
MA-4680]
Length = 144
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ A+ + SM+P + GD L+L +V GD ++++
Sbjct: 2 PELSQETERGRAVLPFGAA-EVTGPSMVPTLQHGDRLLLQYGARVRPGDIVVLR 54
>gi|325579221|ref|ZP_08149177.1| LexA repressor [Haemophilus parainfluenzae ATCC 33392]
gi|325159456|gb|EGC71590.1| LexA repressor [Haemophilus parainfluenzae ATCC 33392]
Length = 208
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 30/141 (21%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQ- 136
D +++E+ +PL+ +G P + H G Y +
Sbjct: 70 DDSANDEEEEGLPLIGRVAAGE--------------------PILAEQHIEGTYRVDANM 109
Query: 137 -----DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
D K SM + GD+L ++S V G ++++ ++ K L + G
Sbjct: 110 FKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNG-QIVVARIEDEVTVKRLERK-G 167
Query: 191 RSIDLMSLNCCYPVDTVEMSD 211
I L + N + V + +
Sbjct: 168 SVIYLHAENEEFQPIVVNLEE 188
>gi|310777871|ref|YP_003966204.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
gi|309747194|gb|ADO81856.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
Length = 219
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
K + SM P + G +I+++ +++++ + KVL + + + L S
Sbjct: 129 MKVEGDSMEPRIKDGSEIIVDTNKNTLEENLNKIVVFNLNDEAYVKVLKLNKNKLV-LQS 187
Query: 198 LNCCYPVDTVEMSD 211
+N YP ++ +D
Sbjct: 188 INDKYPNIAIKSTD 201
>gi|254439517|ref|ZP_05053011.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
gi|198254963|gb|EDY79277.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
Length = 144
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + + + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIDPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 82 RRVG-RAVLAVVEGAVTAKMLRKRDGRYF-LAPANSKESFPDIELTE 126
>gi|160875227|ref|YP_001554543.1| putative phage repressor [Shewanella baltica OS195]
gi|160860749|gb|ABX49283.1| putative phage repressor [Shewanella baltica OS195]
gi|315267420|gb|ADT94273.1| putative phage repressor [Shewanella baltica OS678]
Length = 247
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 22/131 (16%)
Query: 99 GSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRK 153
G G F D P W + ++ + + YA + SM P
Sbjct: 124 GHGAFNDETGVRRRLPFRKNW--LKYRSLKPENLKVVYA----------KGNSMEPAIHS 171
Query: 154 GDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD- 211
GD L+++ S + G +++ D+ AK L I+++S N Y V +
Sbjct: 172 GDSLLVDISKTTLEDGCIFVLRLGD-DLYAKRLQKLFDGGIEILSDNKEYKSQIVSAGEL 230
Query: 212 --IEWIARILW 220
++ I +++W
Sbjct: 231 PMLQIIGKVVW 241
>gi|268679524|ref|YP_003303955.1| peptidase S24/S26A/S26B, conserved region [Sulfurospirillum
deleyianum DSM 6946]
gi|268617555|gb|ACZ11920.1| Peptidase S24/S26A/S26B, conserved region [Sulfurospirillum
deleyianum DSM 6946]
Length = 219
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
SM P GD++ ++ ++ G + K L ++ L+
Sbjct: 131 QAINVLGDSMEPTLFSGDVVFIHKEYTNARKAGIYVVSTPAG-LFIKRLHVHANGTVALV 189
Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
S N Y + ++ D+ + +++
Sbjct: 190 SDNEAYAPEVMQAEDVNVLGKVV 212
>gi|237728500|ref|ZP_04558981.1| UV protection and mutation protein [Citrobacter sp. 30_2]
gi|226909978|gb|EEH95896.1| UV protection and mutation protein [Citrobacter sp. 30_2]
Length = 138
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
S FP+ ++ + + + + +SM +GD++I++S+++
Sbjct: 22 SAGFPSVASDYVDEFIDLNTH---LIKHPSATYFLRVTGSSMVEARIHEGDLVIVDSSLE 78
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
GD ++I GD K L ++
Sbjct: 79 AKEGD-IVIATVDGDFTIKRLQLSPAPAL 106
>gi|213692631|ref|YP_002323217.1| putative prophage repressor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|213524092|gb|ACJ52839.1| putative prophage repressor [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 128
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GD+LI++ ++ GD ++ +I K L+SR +
Sbjct: 13 EATLFVMQMAGDSMINAGIHNGDLLIVDRSLTPVPGD-VVAAVMDDEIAIKRLVSRASTT 71
Query: 193 IDLMSLNCCYPV 204
I L + N YP
Sbjct: 72 I-LHAENPRYPD 82
>gi|331092945|ref|ZP_08341450.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022479|gb|EGI02536.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 202
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
+ EIP+L +G+ P G + + + D +
Sbjct: 73 PRPELLEIPVLGRVAAGA---------PIGPDLDIHTTLHLDRSTFT----RVPDYLLRV 119
Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
Q SM GD++ ++ Q + G ++ + G++ K L R G + L+ N
Sbjct: 120 QGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL-DGEVTIKRLQHR-GDQLHLLPRNPA 177
Query: 202 YPVDTVEMSD 211
Y V
Sbjct: 178 YQPIIVTPDQ 187
>gi|325570955|ref|ZP_08146574.1| signal peptidase IB [Enterococcus casseliflavus ATCC 12755]
gi|325156281|gb|EGC68465.1| signal peptidase IB [Enterococcus casseliflavus ATCC 12755]
Length = 191
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM ++GD++++ + D ++ + G K +I G S+
Sbjct: 46 PVEGNSMEGTLKQGDMVVIEKISPIQRFDVVVFQLPDGSTYIKRVIGLPGESV 98
>gi|327198606|ref|YP_004327350.1| phage repressor protein [Erwinia phage phiEt88]
gi|311875300|emb|CBX44558.1| phage repressor protein [Erwinia phage phiEt88]
Length = 236
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCY 202
SM P+ G + +++ + +L G K L I + S N +
Sbjct: 154 GNSMEPIIPDGTTVAVDTNNKKIVDGKLYAIDHGGLKRIKQLFRMPNNMISVRSFNKDEF 213
Query: 203 PVDTVEMSDIEWIARILWAS 222
P V +++I I R+ W S
Sbjct: 214 PDQDVRINEITVIGRLFWYS 233
>gi|297627274|ref|YP_003689037.1| Prophage repressor precursor (peptidase family S24)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296923039|emb|CBL57622.1| Prophage repressor precursor (Peptidase family S24)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 144
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 113 NKWNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
W + + + + + SM+ GD L+++ ++ G
Sbjct: 29 AGWPSPAADYFDGDVDLNEHLLVNRPASFIVRVAGDSMIGAGIFDGDELVVDRSLDPVDG 88
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
D ++I ++ K L +L N YPV W
Sbjct: 89 D-VVIAVVDNELTVKTLH-LGESGPELRPENPAYPVIRPATDLRVW 132
>gi|302188082|ref|ZP_07264755.1| putative UV resistance protein [Pseudomonas syringae pv. syringae
642]
Length = 143
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
SG FP+ + P + A +T+ SM P G L+++ A
Sbjct: 26 SGGFPSPAA-DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNGTKLVIDRART 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
G+ +++ V K L + L S N YP + +IE + W+
Sbjct: 83 PQVGN-VVVAYIDNQPVVKRLDRQLNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137
>gi|194014198|ref|ZP_03052815.1| signal peptidase I [Bacillus pumilus ATCC 7061]
gi|194013224|gb|EDW22789.1| signal peptidase I [Bacillus pumilus ATCC 7061]
Length = 201
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIV--AKVLISRRGR 191
+ + SM P G+ L +N I V GD ++I + G + K LI G
Sbjct: 50 EPYVVEGESMEPTLHDGEKLFVNKTINYLGGVKRGDIVIINGKDGQKIHYVKRLIGLPGD 109
Query: 192 SIDL 195
+I++
Sbjct: 110 TIEM 113
>gi|157692118|ref|YP_001486580.1| signal peptidase I [Bacillus pumilus SAFR-032]
gi|157680876|gb|ABV62020.1| signal peptidase I [Bacillus pumilus SAFR-032]
Length = 201
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIV--AKVLISRRGR 191
+ + SM P G+ L +N I V GD ++I + G + K LI G
Sbjct: 50 EPYVVEGESMEPTLHDGEKLFVNKTINYLGGVKRGDIVIINGKDGQKIHYVKRLIGLPGD 109
Query: 192 SIDL 195
+I++
Sbjct: 110 TIEM 113
>gi|66394691|ref|YP_240858.1| ORF021 [Staphylococcus phage X2]
gi|62636915|gb|AAX92026.1| ORF021 [Staphylococcus phage X2]
Length = 200
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
+ D K SM P+++ G+I+ + + G
Sbjct: 147 VPPHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNG 182
>gi|290957472|ref|YP_003488654.1| hypothetical protein SCAB_29922 [Streptomyces scabiei 87.22]
gi|260646998|emb|CBG70097.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 144
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ A+ + SM+P R GD L+++ ++ GD L+++
Sbjct: 2 PELSRESERGGALLPFGVA-EVTGPSMVPTLRHGDRLLVHYGARLRVGDVLVLR 54
>gi|156083182|ref|XP_001609075.1| hypothetical protein [Babesia bovis T2Bo]
gi|154796325|gb|EDO05507.1| conserved hypothetical protein [Babesia bovis]
Length = 152
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC-GDRLLIKPRT--GDIV 181
+ A + + S +P+YR GDI+I + R+++ GDI+
Sbjct: 46 DESRAIAFFVRPHLLRILRGSPVPIYRDGDIVIAKSPTNATRRICKRVVVISPEHRGDIM 105
Query: 182 A 182
Sbjct: 106 V 106
>gi|28869978|ref|NP_792597.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000]
gi|213966983|ref|ZP_03395133.1| LexA repressor [Pseudomonas syringae pv. tomato T1]
gi|301385168|ref|ZP_07233586.1| LexA repressor [Pseudomonas syringae pv. tomato Max13]
gi|37999579|sp|Q881U0|LEXA2_PSESM RecName: Full=LexA repressor 2
gi|28853223|gb|AAO56292.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000]
gi|213928305|gb|EEB61850.1| LexA repressor [Pseudomonas syringae pv. tomato T1]
Length = 202
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 22/162 (13%)
Query: 57 SIFK--ILAATNETICQLLD----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
S+ + I+A T + +++ + EIP+L +G+ P
Sbjct: 41 SVARKHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRVAAGA---------P 91
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
G + + + D + Q SM GD++ ++ Q + G
Sbjct: 92 IGPDLDIHTTLHLDRSTFT----RVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQ 147
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
++ + G++ K L R G + L+ N Y V
Sbjct: 148 IVVARL-EGEVTIKRLQHR-GDQLHLLPRNPAYQPIIVTPDQ 187
>gi|297202323|ref|ZP_06919720.1| signal peptidase [Streptomyces sviceus ATCC 29083]
gi|197710157|gb|EDY54191.1| signal peptidase [Streptomyces sviceus ATCC 29083]
Length = 145
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ + + SM+P R GD L+++ +V GD ++++
Sbjct: 2 PELSQETERGRPLLPFVGVAEVTGPSMVPTLRHGDQLVVHWGARVVPGDIVVLR 55
>gi|262194743|ref|YP_003265952.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
14365]
gi|262078090|gb|ACY14059.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
14365]
Length = 260
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 14 DRMA---ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
DR+ E+ L+ + LA+ AG++ ++ N R R P TE + + AA ++
Sbjct: 16 DRLVSFLEKRELSQTELAKMAGIERSTLN---RLANNKRE--PRTEEVEWLAAALKISVD 70
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLY 94
+L+ D E+ E+E L
Sbjct: 71 ELVAGVEFDSEPPERDEREAELAA 94
>gi|319897230|ref|YP_004135425.1| hypothetical protein HIBPF09641 [Haemophilus influenzae F3031]
gi|317432734|emb|CBY81099.1| Conserved hypothetical protein [Haemophilus influenzae F3031]
Length = 230
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P RKGDI+ +++ I GD + G++ K + ++S N
Sbjct: 140 VPTDSMEPTIRKGDIVFIDTTINCYIGDGIYAFSINGELYIKRIQKLMSGGYRMISDNQA 199
Query: 202 YPVDTVE 208
YP + +
Sbjct: 200 YPSEIIS 206
>gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407]
Length = 211
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 136 QDTRHKTQDTSM-LPL---YRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRG 190
+ SM P +G I++++ ++ G ++ K + K L+ G
Sbjct: 117 DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDAG 176
Query: 191 RSIDLMSLNCCYP 203
R L LN YP
Sbjct: 177 RRF-LKPLNPQYP 188
>gi|11499245|ref|NP_070483.1| signal sequence peptidase, putative [Archaeoglobus fulgidus DSM
4304]
gi|2648897|gb|AAB89589.1| signal sequence peptidase, putative [Archaeoglobus fulgidus DSM
4304]
Length = 290
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 129 GIYAIQTQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
Y + + D R +SM PL GD++++ + V+ GD + K +G +
Sbjct: 18 SAYEVYSDDVRILVVLSSSMEPLMHPGDLIVVKRSSDVSLGDVVAFKDPSGKKSVLITHR 77
>gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72]
gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057]
Length = 242
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 126 PHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+Y+ + Q D Q SM P+Y G+I ++ + G + +
Sbjct: 138 ETETVYSDEEQYGYDVAAWIQGDSMKPVYEDGEIALIRATGFDYDG-AVYALSWNESVYI 196
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
K L ++SLN YP + D
Sbjct: 197 KRLYREENG-FRMVSLNKKYPDRFIPFED 224
>gi|313810016|gb|EFS47737.1| LexA DNA binding domain protein [Propionibacterium acnes HL083PA1]
Length = 224
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 112 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPDIHSGDLVVVRRISVSDLPDDPPET 171
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 172 --YLVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 213
>gi|254450110|ref|ZP_05063547.1| UmuD protein [Octadecabacter antarcticus 238]
gi|198264516|gb|EDY88786.1| UmuD protein [Octadecabacter antarcticus 238]
Length = 144
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
+ + + +P+L + S FP+ + + + P + +
Sbjct: 3 VYPIEIPVVAEGQIVPIL-LARA-------SAGFPSPAGDD---LEDEIDPIAWVVRHPS 51
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ + + + R GDI+ ++ A + G R ++ G + AK+L R G +
Sbjct: 52 STFWWRVEGDCLWDVGIRDGDIIAVDRAGKRRLG-RAVLAVVEGAVTAKILRKRNG-NFY 109
Query: 195 LMSLNCCYPVDTVEMSD 211
L N +E+++
Sbjct: 110 LAPANTREAFPDIELNE 126
>gi|78485578|ref|YP_391503.1| putative prophage repressor [Thiomicrospira crunogena XCL-2]
gi|78363864|gb|ABB41829.1| S24 family peptidase [Thiomicrospira crunogena XCL-2]
Length = 153
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 19/127 (14%)
Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM- 147
++PLL + S P + + PH+ ++ + + + +SM
Sbjct: 32 QVPLLG---------WTSAGEPIQM---EMDYDTVSVPHSM---VRKETFALRVKGSSMI 76
Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRRGRSIDLMSLNCCYPVDT 206
GDI+I+ G+ ++++ ++ + K I + G I L N
Sbjct: 77 EENIEDGDIVIIERRSTAENGESVVVRINNEEVTMKKFYIEKNG--IRLQPANADMEPIY 134
Query: 207 VEMSDIE 213
+ +IE
Sbjct: 135 ITNENIE 141
>gi|47605801|sp|P61613|LEXA_RHOCA RecName: Full=LexA repressor
gi|33340117|gb|AAQ14546.1|AF308861_1 LexA [Rhodobacter capsulatus]
Length = 238
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM+ GDI+++ S GD ++ + K R G I
Sbjct: 148 GEHYALEVKGDSMIQAGINDGDIVVIRSQPTAENGDIVVALVEDLEATLKRYYRR-GGMI 206
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + ++ R++
Sbjct: 207 ALEAANPAYETRLLREDQVKVQGRLV 232
>gi|115524578|ref|YP_781489.1| LexA repressor [Rhodopseudomonas palustris BisA53]
gi|122296173|sp|Q07NH5|LEXA_RHOP5 RecName: Full=LexA repressor
gi|115518525|gb|ABJ06509.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
palustris BisA53]
Length = 237
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM+ GD+ ++ + GD ++
Sbjct: 136 TISVPPDMLGSGEHYALE-------VRGDSMVDAGILDGDMALIQKNESADTGDIVVALI 188
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 189 DEEEATLKRFRRRGA-SIALEPANSAYEVRILPPNRV 224
>gi|329726858|gb|EGG63318.1| peptidase S24-like protein [Staphylococcus epidermidis VCU144]
Length = 208
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
S P ++ N + + ++ K +M +++ GDI+++ V
Sbjct: 90 SAGLPIYSEENLIDYIYFATNKLNS---DKEEFGLKVSGDNMDKIFQDGDIVVVEKDSIV 146
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDL-MSLNCCY-PVDTVEMSDIEWIARILWASQ 223
G ++ + K + + I + S N + P + +++ I R++ ASQ
Sbjct: 147 ENGQLGVVMINGYNATVKRIRYNGDQVILIPESNNTNHYPQVYGKNDEVKIIGRVV-ASQ 205
>gi|240104183|ref|YP_002960492.1| Signal peptidase, peptidase S26B [Thermococcus gammatolerans EJ3]
gi|239911737|gb|ACS34628.1| Signal peptidase, peptidase S26B [Thermococcus gammatolerans EJ3]
Length = 191
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
SM P GD++++ + V+ GD +L + G +++ D
Sbjct: 32 QYVVVLTDSMKPNINPGDLVVIYPSRDVHPGDVVLYRIELGGTEYRIIHRVVAIRTD 88
>gi|238789914|ref|ZP_04633694.1| LexA repressor [Yersinia frederiksenii ATCC 33641]
gi|238721987|gb|EEQ13647.1| LexA repressor [Yersinia frederiksenii ATCC 33641]
Length = 202
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENTEFQPIIVDLRE 183
>gi|296453865|ref|YP_003661008.1| putative prophage repressor [Bifidobacterium longum subsp. longum
JDM301]
gi|296183296|gb|ADH00178.1| putative prophage repressor [Bifidobacterium longum subsp. longum
JDM301]
Length = 128
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
T + SM+ GD+LI++ ++ GD ++ +I K L+SR G +
Sbjct: 13 DTTLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSRAGIT 71
Query: 193 IDLMSLNCCYPV 204
I L + N YP
Sbjct: 72 I-LHAENPRYPD 82
>gi|329889326|ref|ZP_08267669.1| lexA repressor [Brevundimonas diminuta ATCC 11568]
gi|328844627|gb|EGF94191.1| lexA repressor [Brevundimonas diminuta ATCC 11568]
Length = 234
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P +++PLL +G+ + ++ + VPE Y ++
Sbjct: 97 PRPAVAEAANDVRDLPLLGKIAAGT------PIAAIQHERERLPVPEAMLGAGEHYLLE- 149
Query: 136 QDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SM GD +I+ + G+ ++ + K L ++G+SI
Sbjct: 150 ------IEGDSMIEAGILDGDTVIIKRVENASSGEIVVALVEGEEATLKRL-RKKGQSIA 202
Query: 195 LMSLNCCYPVDTVEMSDIE 213
L N Y +E
Sbjct: 203 LEPANSAYETRIFGPDQVE 221
>gi|294677883|ref|YP_003578498.1| LexA repressor [Rhodobacter capsulatus SB 1003]
gi|294476703|gb|ADE86091.1| LexA repressor [Rhodobacter capsulatus SB 1003]
Length = 238
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM+ GDI+++ S GD ++ + K R G I
Sbjct: 148 GEHYALEVKGDSMIQAGINDGDIVVIRSQPTAENGDIVVALVEDLEATLKRYYRR-GGMI 206
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L + N Y + ++ R++
Sbjct: 207 ALEAANPAYETRLLREDQVKVQGRLV 232
>gi|254438451|ref|ZP_05051945.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
gi|198253897|gb|EDY78211.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
Length = 144
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + + + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIDPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 82 RRVG-RAVLAVVEGAVTAKMLRKRDGRYF-LAPANSTESFPDIELTE 126
>gi|94496455|ref|ZP_01303032.1| SOS-response transcriptional repressor [Sphingomonas sp. SKA58]
gi|94424201|gb|EAT09225.1| SOS-response transcriptional repressor [Sphingomonas sp. SKA58]
Length = 223
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 106 SGVFPTGNKWNT--VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSA 162
+ P + VP YA++ SM GD ++
Sbjct: 108 AAGVPIEAMEGQAMLSVPAALLGSGDHYALE-------VSGDSMVEAGILDGDFALIQRT 160
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
G ++ + K R + L N Y + +
Sbjct: 161 DVAREGQIVVALIDDNEATLKYFRRDGAR-VRLDPANPAYEPQVYDPRQV 209
>gi|260767588|ref|ZP_05876524.1| SOS-response repressor and protease LexA [Vibrio furnissii CIP
102972]
gi|260617488|gb|EEX42671.1| SOS-response repressor and protease LexA [Vibrio furnissii CIP
102972]
gi|315178782|gb|ADT85696.1| LexA repressor [Vibrio furnissii NCTC 11218]
Length = 208
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQ------TQDTRHKTQDTSMLPL-YRKGDI 156
D P G P + H Y + D + SM + GD+
Sbjct: 78 DDAGLPL-IGRVAAGEPILAQEHVEAHYQVDPGMFRPQADFLLRVHGESMKNIGIMDGDL 136
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
L ++ V+ G ++++ D+ K L + + + L + N + V+++
Sbjct: 137 LAVHKTQDVHNG-QVVVARVEDDVTVKRLERKGAKVL-LHAENEAFSPIEVDLT 188
>gi|332701651|ref|ZP_08421739.1| CI repressor [Desulfovibrio africanus str. Walvis Bay]
gi|332551800|gb|EGJ48844.1| CI repressor [Desulfovibrio africanus str. Walvis Bay]
Length = 226
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 27/167 (16%)
Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
E + P + + + + + + + W +
Sbjct: 76 GEAHVASMAEPAVGYGKSPARSRVVNVSSMTGASTKE----------GSW-QPDFISQLA 124
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-------GDRLLIKPRTG 178
Y + K + + M PL R+G + + G + P G
Sbjct: 125 IPETFY--RPTLLALKIEGSGMEPLIRRGAY--VGLDMDQRRILSGELYGVHV---PHEG 177
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARILWASQ 223
++ +V L S N +P + E+ D + + RI+W Q
Sbjct: 178 LVLKRVFFDAENNRFILRSENPIHPEQYLSPELKDKQLVGRIVWVLQ 224
>gi|85374133|ref|YP_458195.1| LexA repressor [Erythrobacter litoralis HTCC2594]
gi|123293744|sp|Q2NA93|LEXA_ERYLH RecName: Full=LexA repressor
gi|84787216|gb|ABC63398.1| SOS-response transcriptional repressor [Erythrobacter litoralis
HTCC2594]
Length = 233
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 12/137 (8%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSPHNGIYAIQTQ 136
D RT + K P+ G + P + ++ VP YA++
Sbjct: 92 DIRTAQAKTVPAPINDVVEIPLHGRI-AAGAPIEALEDHQSLPVPAALLGPGDHYALE-- 148
Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
SM GD ++ G+ ++ + K L GR + L
Sbjct: 149 -----VSGDSMIEAGIFDGDFALIRRTDSARDGEIVVALVNNEEATLKYLHRDSGR-VRL 202
Query: 196 MSLNCCYPVDTVEMSDI 212
N Y + +
Sbjct: 203 DPANASYEAQVYDPHQV 219
>gi|238854642|ref|ZP_04644972.1| signal peptidase I [Lactobacillus jensenii 269-3]
gi|260664415|ref|ZP_05865267.1| signal peptidase I [Lactobacillus jensenii SJ-7A-US]
gi|282932967|ref|ZP_06338364.1| signal peptidase I [Lactobacillus jensenii 208-1]
gi|238832432|gb|EEQ24739.1| signal peptidase I [Lactobacillus jensenii 269-3]
gi|260561480|gb|EEX27452.1| signal peptidase I [Lactobacillus jensenii SJ-7A-US]
gi|281303002|gb|EFA95207.1| signal peptidase I [Lactobacillus jensenii 208-1]
Length = 192
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P + GD +I + GD +++ G + K ++ G SI
Sbjct: 45 TVSGPSMQPTFENGDRIIAVRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSI 99
>gi|171779237|ref|ZP_02920208.1| hypothetical protein STRINF_01085 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282293|gb|EDT47720.1| hypothetical protein STRINF_01085 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 197
Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
SM P G+ LI+ +++ D ++ K + G+ +++
Sbjct: 31 VDGHSMDPTLADGERLIVLRTAKIDRFDIVVAKEKEGNKTKEIVKR 76
>gi|153000591|ref|YP_001366272.1| putative phage repressor [Shewanella baltica OS185]
gi|151365209|gb|ABS08209.1| putative phage repressor [Shewanella baltica OS185]
Length = 247
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 144 DTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM P GD L+++ S + G +++ D+ AK L I+++S N Y
Sbjct: 162 GNSMEPAIHSGDSLLVDISKTTLEDGCIFVLRLGD-DLYAKRLQKLFDGGIEILSDNKEY 220
Query: 203 PVDTVEMSD---IEWIARILW 220
V + ++ I +++W
Sbjct: 221 KSQIVSAGELPMLQIIGKVVW 241
>gi|22537417|ref|NP_688268.1| repressor protein [Streptococcus agalactiae 2603V/R]
gi|77406937|ref|ZP_00783958.1| repressor protein, putative [Streptococcus agalactiae H36B]
gi|22534293|gb|AAN00141.1|AE014250_4 repressor protein, putative [Streptococcus agalactiae 2603V/R]
gi|77174457|gb|EAO77305.1| repressor protein, putative [Streptococcus agalactiae H36B]
Length = 230
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P ++ + S D SM P+Y+ G++ ++ S + G
Sbjct: 117 PGEGLYDEFETETVYSEDEYT----GFDIATWISGNSMEPVYKDGEVALIRSTGFDHDG- 171
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G + K L ++S+N + D
Sbjct: 172 AVYALNWNGSLYIKKLYRE-EDGFRMVSINPDVAERFIPFED 212
>gi|329120198|ref|ZP_08248867.1| cro/CI family prophage MuSo2 [Neisseria bacilliformis ATCC
BAA-1200]
gi|327463350|gb|EGF09670.1| cro/CI family prophage MuSo2 [Neisseria bacilliformis ATCC
BAA-1200]
Length = 217
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P GD L+++++ + + + + K + S+ L+S N YP
Sbjct: 132 GDSMEPTINNGDTLLVDASRNMPRDGYIYVIRSADTLWVKRIQKHIDNSLLLISDNGTYP 191
Query: 204 VDTVEMSD 211
T+
Sbjct: 192 PMTLRSDQ 199
>gi|307942169|ref|ZP_07657520.1| repressor LexA [Roseibium sp. TrichSKD4]
gi|307774455|gb|EFO33665.1| repressor LexA [Roseibium sp. TrichSKD4]
Length = 239
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 15/137 (10%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
E + EIP++ +G + +++ VP YA++
Sbjct: 104 QPSAPVVEAQTTEIPVMGRIAAGV------PIEAIQTHSHSISVPPELIGKGEHYALE-- 155
Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ SM GD +++ + + GD ++ + K L + SI L
Sbjct: 156 -----VRGDSMIEAGILDGDTVLIRRSDSADSGDIVVALVDDEEATLKRLRKKGA-SIAL 209
Query: 196 MSLNCCYPVDTVEMSDI 212
+ N Y +
Sbjct: 210 EAANPAYETRIFGPGRV 226
>gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator
[Shewanella oneidensis MR-1]
gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family
[Shewanella oneidensis MR-1]
Length = 272
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 45/208 (21%)
Query: 56 ESIFKILAATNETI--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
E++ K+L T I + +P + + +E++ L+ P
Sbjct: 57 ETLAKVLNVTPAEILYGENNKDDDFVSMPSAQYSSGPYEEEDPFQLFKPKQELQNAEWHA 116
Query: 108 VFPTGNKWN--------TVGVP-----EIRSPHNGIYAIQ-------------------- 134
F W+ V +P E+ + + +
Sbjct: 117 GF---ELWDGDTPLRDDEVALPFYREVELAAGSGSTFVQENGGCKLRFAKSTLKKSRVEP 173
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
+ SMLP+ R G + ++++ + + G + K+L G I
Sbjct: 174 SNAACVTVSGNSMLPVLRHGTTVGVDTSKKSIIDGEMYAIDHDGMLRVKMLYRTPGGGIR 233
Query: 195 LMSL-NCCYPVDTVEMSDIEWIARILWA 221
+ S N +P + + I I W
Sbjct: 234 IKSYNNDEFPDEFIPPEKASDIKIIGWV 261
>gi|288556885|ref|YP_003428820.1| LexA repressor [Bacillus pseudofirmus OF4]
gi|288548045|gb|ADC51928.1| LexA repressor [Bacillus pseudofirmus OF4]
Length = 207
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
++L++ D EKK +P++ +G + N + +P+ ++ +
Sbjct: 67 EVLEMDELDPVVHEKKTAYVPIVGKVTAGM------PITAIENVEEYLPLPDHLVTNDSV 120
Query: 131 YAIQTQDTRHKTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
Y + Q SM +Y GD++I+ N GD ++ + K
Sbjct: 121 YVL-------VIQGDSMIEAGIY-DGDMVIVRQQQTANNGDIIVAMTEENEATVKRFFR 171
>gi|283850860|ref|ZP_06368146.1| putative phage repressor [Desulfovibrio sp. FW1012B]
gi|283573783|gb|EFC21757.1| putative phage repressor [Desulfovibrio sp. FW1012B]
Length = 229
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM P R GD ++++ + ++ K + R G ++
Sbjct: 136 PASMVLMDVVGNSMEPEIRHGDTVLIDQGQTGVMAHAVYAVGVEDTVLVKRVEKRPG-AL 194
Query: 194 DLMSLNCCYPVDTVEMSDIEW---IARILWA 221
L+S N Y + +++ I R+LW
Sbjct: 195 VLLSDNRDYAPLVLSGDELDALRVIGRVLWV 225
>gi|303327832|ref|ZP_07358272.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp.
3_1_syn3]
gi|302862193|gb|EFL85127.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp.
3_1_syn3]
Length = 227
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGV 108
P E ++ A ++ LL T E + +P++ S G F++G
Sbjct: 53 PKGEFAVRLSEALRCSLDWLLAGKGDADGDVLDTPEARLVMVPMVEARLSAGTGSFETGG 112
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
+ + Q + SM P D+++++ +
Sbjct: 113 EILRHYAFRWDFLHRKGN-------PAQMVLLRVSGDSMQPRILHNDVVLIDQSQSDPVP 165
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221
R+ G + K++ + G+ I L S+N Y + + + I R +W
Sbjct: 166 GRIYAVGVEGMVYLKIVNAMPGKLI-LTSVNPDYAPIEADTCEQLADLVRIIGRAVWV 222
>gi|254452581|ref|ZP_05066018.1| SOS-response transcriptional repressor [Octadecabacter antarcticus
238]
gi|198266987|gb|EDY91257.1| SOS-response transcriptional repressor [Octadecabacter antarcticus
238]
Length = 130
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + + + + + + R GDI+ ++ A +
Sbjct: 11 SAGFPSPAGDD---LEDEIDPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 67
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 68 RRVG-RAVLAVVEGAVTAKMLRKRDGRYF-LAPANSKESFPDIELTE 112
>gi|254436519|ref|ZP_05050013.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
gi|198251965|gb|EDY76279.1| Peptidase S24-like domain protein [Octadecabacter antarcticus 307]
Length = 144
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + P + + + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIDPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 82 RRVG-RAVLAVVDGAVTAKMLRKRDGRYF-LSPANSKESFPDIELTE 126
>gi|300726615|ref|ZP_07060054.1| protein SamA [Prevotella bryantii B14]
gi|299776102|gb|EFI72673.1| protein SamA [Prevotella bryantii B14]
Length = 145
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + E + + SM GD +I++ A++
Sbjct: 24 AGFPS-PAEDYI--HETLDFNRDYIRHPEASFYGDVEGDSMKDAGLLDGDRVIIDRAVEP 80
Query: 166 NCGDRLLIKPRTGDIVAKV-LISRRGRSIDLMSLNCCYPV 204
+ G ++ G + + L R+ I+L N YPV
Sbjct: 81 HDGSIVVAWWDGGFTMKFLDLTHRKDGYIELRPANPDYPV 120
>gi|289425183|ref|ZP_06426960.1| LexA DNA binding domain protein [Propionibacterium acnes SK187]
gi|289427114|ref|ZP_06428830.1| LexA DNA binding domain protein [Propionibacterium acnes J165]
gi|295130583|ref|YP_003581246.1| LexA DNA binding domain protein [Propionibacterium acnes SK137]
gi|289154161|gb|EFD02849.1| LexA DNA binding domain protein [Propionibacterium acnes SK187]
gi|289159583|gb|EFD07771.1| LexA DNA binding domain protein [Propionibacterium acnes J165]
gi|291377383|gb|ADE01238.1| LexA DNA binding domain protein [Propionibacterium acnes SK137]
Length = 227
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 115 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPDIHSGDLVVVRRISVSDLPDDPPET 174
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 175 --YLVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 216
>gi|146310671|ref|YP_001175745.1| putative phage repressor [Enterobacter sp. 638]
gi|145317547|gb|ABP59694.1| putative phage repressor [Enterobacter sp. 638]
Length = 218
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CY 202
SM P G + +N+ + ++ G K+L ++ + S N +
Sbjct: 135 GNSMEPNIPDGTTVAVNTEDKKIIDGKMYAISEDGWKRIKLLYRTGPETVSIRSYNAAEH 194
Query: 203 PVDTVEMSDIEWIARILWAS 222
P + + +IE I R+ W S
Sbjct: 195 PPEEKPLGNIEVIGRVFWWS 214
>gi|50842506|ref|YP_055733.1| LexA repressor [Propionibacterium acnes KPA171202]
gi|50840108|gb|AAT82775.1| LexA repressor [Propionibacterium acnes KPA171202]
gi|313764466|gb|EFS35830.1| LexA DNA binding domain protein [Propionibacterium acnes HL013PA1]
gi|313772152|gb|EFS38118.1| LexA DNA binding domain protein [Propionibacterium acnes HL074PA1]
gi|313792152|gb|EFS40253.1| LexA DNA binding domain protein [Propionibacterium acnes HL110PA1]
gi|313801895|gb|EFS43129.1| LexA DNA binding domain protein [Propionibacterium acnes HL110PA2]
gi|313807508|gb|EFS45995.1| LexA DNA binding domain protein [Propionibacterium acnes HL087PA2]
gi|313812953|gb|EFS50667.1| LexA DNA binding domain protein [Propionibacterium acnes HL025PA1]
gi|313816004|gb|EFS53718.1| LexA DNA binding domain protein [Propionibacterium acnes HL059PA1]
gi|313818550|gb|EFS56264.1| LexA DNA binding domain protein [Propionibacterium acnes HL046PA2]
gi|313820317|gb|EFS58031.1| LexA DNA binding domain protein [Propionibacterium acnes HL036PA1]
gi|313822876|gb|EFS60590.1| LexA DNA binding domain protein [Propionibacterium acnes HL036PA2]
gi|313825192|gb|EFS62906.1| LexA DNA binding domain protein [Propionibacterium acnes HL063PA1]
gi|313827767|gb|EFS65481.1| LexA DNA binding domain protein [Propionibacterium acnes HL063PA2]
gi|313830344|gb|EFS68058.1| LexA DNA binding domain protein [Propionibacterium acnes HL007PA1]
gi|313833718|gb|EFS71432.1| LexA DNA binding domain protein [Propionibacterium acnes HL056PA1]
gi|313838722|gb|EFS76436.1| LexA DNA binding domain protein [Propionibacterium acnes HL086PA1]
gi|314915458|gb|EFS79289.1| LexA DNA binding domain protein [Propionibacterium acnes HL005PA4]
gi|314918258|gb|EFS82089.1| LexA DNA binding domain protein [Propionibacterium acnes HL050PA1]
gi|314920071|gb|EFS83902.1| LexA DNA binding domain protein [Propionibacterium acnes HL050PA3]
gi|314925204|gb|EFS89035.1| LexA DNA binding domain protein [Propionibacterium acnes HL036PA3]
gi|314932085|gb|EFS95916.1| LexA DNA binding domain protein [Propionibacterium acnes HL067PA1]
gi|314955746|gb|EFT00146.1| LexA DNA binding domain protein [Propionibacterium acnes HL027PA1]
gi|314958161|gb|EFT02264.1| LexA DNA binding domain protein [Propionibacterium acnes HL002PA1]
gi|314960013|gb|EFT04115.1| LexA DNA binding domain protein [Propionibacterium acnes HL002PA2]
gi|314962810|gb|EFT06910.1| LexA DNA binding domain protein [Propionibacterium acnes HL082PA1]
gi|314967822|gb|EFT11921.1| LexA DNA binding domain protein [Propionibacterium acnes HL037PA1]
gi|314973349|gb|EFT17445.1| LexA DNA binding domain protein [Propionibacterium acnes HL053PA1]
gi|314976026|gb|EFT20121.1| LexA DNA binding domain protein [Propionibacterium acnes HL045PA1]
gi|314978435|gb|EFT22529.1| LexA DNA binding domain protein [Propionibacterium acnes HL072PA2]
gi|314983952|gb|EFT28044.1| LexA DNA binding domain protein [Propionibacterium acnes HL005PA1]
gi|314988136|gb|EFT32227.1| LexA DNA binding domain protein [Propionibacterium acnes HL005PA2]
gi|314989940|gb|EFT34031.1| LexA DNA binding domain protein [Propionibacterium acnes HL005PA3]
gi|315078027|gb|EFT50078.1| LexA DNA binding domain protein [Propionibacterium acnes HL053PA2]
gi|315080652|gb|EFT52628.1| LexA DNA binding domain protein [Propionibacterium acnes HL078PA1]
gi|315084324|gb|EFT56300.1| LexA DNA binding domain protein [Propionibacterium acnes HL027PA2]
gi|315085666|gb|EFT57642.1| LexA DNA binding domain protein [Propionibacterium acnes HL002PA3]
gi|315088912|gb|EFT60888.1| LexA DNA binding domain protein [Propionibacterium acnes HL072PA1]
gi|315096264|gb|EFT68240.1| LexA DNA binding domain protein [Propionibacterium acnes HL038PA1]
gi|315098525|gb|EFT70501.1| LexA DNA binding domain protein [Propionibacterium acnes HL059PA2]
gi|315101117|gb|EFT73093.1| LexA DNA binding domain protein [Propionibacterium acnes HL046PA1]
gi|315105393|gb|EFT77369.1| LexA DNA binding domain protein [Propionibacterium acnes HL030PA1]
gi|315108338|gb|EFT80314.1| LexA DNA binding domain protein [Propionibacterium acnes HL030PA2]
gi|327326176|gb|EGE67966.1| LexA repressor [Propionibacterium acnes HL096PA2]
gi|327330246|gb|EGE71995.1| LexA repressor [Propionibacterium acnes HL097PA1]
gi|327331949|gb|EGE73686.1| LexA repressor [Propionibacterium acnes HL096PA3]
gi|327443150|gb|EGE89804.1| LexA DNA binding domain protein [Propionibacterium acnes HL013PA2]
gi|327445936|gb|EGE92590.1| LexA DNA binding domain protein [Propionibacterium acnes HL043PA2]
gi|327448085|gb|EGE94739.1| LexA DNA binding domain protein [Propionibacterium acnes HL043PA1]
gi|327450793|gb|EGE97447.1| LexA DNA binding domain protein [Propionibacterium acnes HL087PA3]
gi|327453130|gb|EGE99784.1| LexA DNA binding domain protein [Propionibacterium acnes HL092PA1]
gi|327453862|gb|EGF00517.1| LexA DNA binding domain protein [Propionibacterium acnes HL083PA2]
gi|328753481|gb|EGF67097.1| LexA DNA binding domain protein [Propionibacterium acnes HL020PA1]
gi|328754212|gb|EGF67828.1| LexA DNA binding domain protein [Propionibacterium acnes HL087PA1]
gi|328754537|gb|EGF68153.1| LexA DNA binding domain protein [Propionibacterium acnes HL025PA2]
gi|328760602|gb|EGF74169.1| LexA repressor [Propionibacterium acnes HL099PA1]
gi|332675423|gb|AEE72239.1| lexA repressor [Propionibacterium acnes 266]
Length = 224
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 121 PEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILN-------SAIQVNC 167
P + A+ Q H +D M P GD++++
Sbjct: 112 PSNEEHDETVIAVPPQLLSHGEHAVIIVRDDGMSPDIHSGDLVVVRRISVSDLPDDPPET 171
Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
L+ G V + L + GR L S N + ++ + +
Sbjct: 172 --YLVAATAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLDDASL 213
>gi|167622419|ref|YP_001672713.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Shewanella halifaxensis HAW-EB4]
gi|167352441|gb|ABZ75054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Shewanella halifaxensis HAW-EB4]
Length = 1487
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
L R + K + I L G + + P G + S IY
Sbjct: 57 LATEEGLYRVSSNKVRRIDKLGLNSRLGDSALYLAE--PLGLH------HILVSGAYQIY 108
Query: 132 AIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
+S + P YR G I+ S ++ + GDR+ + G+++ +
Sbjct: 109 LYDIHRNEFIEFGSSKLFPEYRGGGIV---SQVEESGGDRIFL-TYDGELLRFNYQNMTL 164
Query: 191 RSIDLMSLNCCYPVDT-VEMSD 211
+ I+ + N +P + +S+
Sbjct: 165 QRINFLPSNPDHPWRIMLPLSE 186
>gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51]
gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51]
Length = 276
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + D LI++ ++ GD + G K L +++S N +
Sbjct: 193 GQSMAPTIKDRDPLIVDVTVREFVGDGVYFISWGGHEYIKRLQVADDEHFEMISDNPKHK 252
Query: 204 VDTVEMSDIEWIARILWA 221
+ + A++L+
Sbjct: 253 DRMIRKEETYIQAKVLYV 270
>gi|260583837|ref|ZP_05851585.1| signal peptidase I [Granulicatella elegans ATCC 700633]
gi|260158463|gb|EEW93531.1| signal peptidase I [Granulicatella elegans ATCC 700633]
Length = 196
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRRGRSIDL 195
SM P GD ++L+ V+ D +++K ++ K +I G ++++
Sbjct: 39 GRPFTVSGASMYPTLHNGDRMVLSKVGDVHRFDVVILKAPDENVEYIKRVIGMPGDTVEM 98
Query: 196 MS 197
S
Sbjct: 99 KS 100
>gi|94994722|ref|YP_602820.1| Cro/CI family transcriptional regulator [Streptococcus phage
10750.3]
gi|94548230|gb|ABF38276.1| Transcriptional regulator, Cro/CI family [Streptococcus phage
10750.3]
Length = 271
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
DT K SM PL + D+L + + QV+ D + I G K L +
Sbjct: 180 DEYDTIAKVAGDSMEPLIQDNDLLFIKVSSQVDMND-IGIFQVNGKNFVKKLKRDYDGAW 238
Query: 194 DLMSLNCCYPVDTVEMSD 211
L SLN Y + D
Sbjct: 239 YLQSLNKSYEEIYLSKDD 256
>gi|15675391|ref|NP_269565.1| putative repressor [Streptococcus phage 370.2]
gi|19746441|ref|NP_607577.1| repressor [Streptococcus pyogenes MGAS8232]
gi|21910679|ref|NP_664947.1| putative cI-like repressor - phage associated [Streptococcus
pyogenes MGAS315]
gi|28876313|ref|NP_795491.1| putative cI-like repressor [Streptococcus pyogenes phage 315.3]
gi|28895631|ref|NP_801981.1| repressor (phage associated) [Streptococcus pyogenes SSI-1]
gi|13622576|gb|AAK34286.1| putative repressor - phage associated [Streptococcus phage 370.2]
gi|19748643|gb|AAL98076.1| putative repressor [Streptococcus pyogenes MGAS8232]
gi|21904881|gb|AAM79750.1| putative cI-like repressor - phage-associated [Streptococcus
pyogenes phage 315.3]
gi|28810880|dbj|BAC63814.1| putative repressor (phage associated) [Streptococcus pyogenes
SSI-1]
Length = 251
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
DT K SM PL + D+L + + QV+ D + I G K L +
Sbjct: 160 DEYDTIAKVAGDSMEPLIQDNDLLFIKVSSQVDMND-IGIFQVNGKNFVKKLKRDYDGAW 218
Query: 194 DLMSLNCCYPVDTVEMSD 211
L SLN Y + D
Sbjct: 219 YLQSLNKSYEEIYLSKDD 236
>gi|51892318|ref|YP_075009.1| signal peptidase, type I [Symbiobacterium thermophilum IAM 14863]
gi|51856007|dbj|BAD40165.1| signal peptidase, type I [Symbiobacterium thermophilum IAM 14863]
Length = 196
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 21/94 (22%)
Query: 140 HKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
SM P R GD +I+ ++ GD + + + R I ++
Sbjct: 46 LTVLSGSMEPAIRTGDAIIVEPLRPEHEIREGDVITFRAADAPDML-----ITHRVIGIV 100
Query: 197 SLNCCYPVDT-------------VEMSDIEWIAR 217
S+N V+ S I I R
Sbjct: 101 SVNGEPAAYVTKGDANEAPDLVPVQRSQIVGIHR 134
>gi|295703313|ref|YP_003596388.1| signal peptidase I V [Bacillus megaterium DSM 319]
gi|294800972|gb|ADF38038.1| signal peptidase I V [Bacillus megaterium DSM 319]
Length = 183
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSID 194
+ + SM P+ +G+ +I+N ++ D ++++ + D + K ++ G +++
Sbjct: 33 QPYTVKGDSMKPILHEGNRIIINKHSKLERFDIVVLQAPYSSDFLVKRIVGLPGETVE 90
>gi|294497959|ref|YP_003561659.1| signal peptidase I V [Bacillus megaterium QM B1551]
gi|294347896|gb|ADE68225.1| signal peptidase I V [Bacillus megaterium QM B1551]
Length = 183
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSID 194
+ + SM P+ +G+ +I+N ++ D ++++ + D + K ++ G +++
Sbjct: 33 QPYTVKGDSMKPILHEGNRIIINKHSKLERFDIVVLQAPYSSDFLVKRIVGLPGETVE 90
>gi|238754679|ref|ZP_04616032.1| LexA repressor [Yersinia ruckeri ATCC 29473]
gi|238707138|gb|EEP99502.1| LexA repressor [Yersinia ruckeri ATCC 29473]
Length = 202
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDI 156
D P G P + H G Y + D + SM + GD+
Sbjct: 72 DEEGLPL-IGRVAAGEPLLAQQHIEGHYKVDPSLFKPNADFLLRVNGMSMRDIGILDGDL 130
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
L ++ V G ++++ ++ K L + G + L+ N + V++ +
Sbjct: 131 LAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183
>gi|260062823|ref|YP_003195903.1| hypothetical protein RB2501_14574 [Robiginitalea biformata
HTCC2501]
gi|88784391|gb|EAR15561.1| hypothetical protein RB2501_14574 [Robiginitalea biformata
HTCC2501]
Length = 251
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 19/88 (21%)
Query: 139 RHKTQDTSMLPLYRKGDILI---------LNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ + SMLP R GD ++ ++ R+ + ++ K +
Sbjct: 135 GFQVEGDSMLPNLRPGDWVLARAVSDWKEVSPN-------RIYVIVLEDAVLVKKVEKLP 187
Query: 190 G-RSIDLMSLNCCYPVDTVEMSDI--EW 214
G L+SLN Y + S + W
Sbjct: 188 GTGRFRLISLNESYAPYEISESQLQEVW 215
>gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
Jelinkova 176]
gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
Jelinkova 176]
Length = 232
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 21/168 (12%)
Query: 53 PST--ESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
P+T ES +KI L + E ++ + + E + IPL
Sbjct: 57 PTTYFESEYKIVNTYLQLSTENQGKVDEYAEGLLQAQESHDNVIPLFAVE------VLSD 110
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAI 163
G + +YA + Q D + SM P+Y G++ ++ ++
Sbjct: 111 VSLSAGFGESLFE----EYETETVYAEEEQYGYDIAAWIKGDSMEPIYLDGEVALIRASG 166
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G + + K L ++SLN YP + D
Sbjct: 167 FDYDG-AVYALSWNDSVYIKKLYREENG-FRMVSLNDNYPDKWIPYED 212
>gi|327198274|ref|YP_004306849.1| gp5 [Burkholderia phage KS14]
gi|310657237|gb|ADP02350.1| gp5 [Burkholderia phage KS14]
Length = 235
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 21/181 (11%)
Query: 49 RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------ 102
R+R P E + ++ L+ L E ++ P + P GG
Sbjct: 44 RDRMPLAECVSLA-EKEGVSLDWLV-LGRGTPGIEEPEQNLNP-IAMPDIEGGGSYVELP 100
Query: 103 FFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAIQT---------QDTRHKTQDTSMLPLYR 152
F+ F G T+ +P + ++ + + SM
Sbjct: 101 AFEMPAFIEGETAQSTIRLPRAWLEPEALGIVEGVNDSSFAPMETIAMRVPGNSMATTIN 160
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD+++++ D + + I + + G + L++ N Y + + +
Sbjct: 161 NGDVVLVDRR--PRDVDGVYVLRMGDSIRLRRVQRMHGGELHLLTDNPAYKSEIISAEQV 218
Query: 213 E 213
+
Sbjct: 219 D 219
>gi|299134983|ref|ZP_07028174.1| transcriptional repressor, LexA family [Afipia sp. 1NLS2]
gi|298589960|gb|EFI50164.1| transcriptional repressor, LexA family [Afipia sp. 1NLS2]
Length = 234
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM GD+ ++ + GD ++
Sbjct: 133 TISVPPDMLGSGEHYALE-------VRGDSMVEAGILDGDMALIQRNENADTGDIVVALI 185
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 186 DEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRV 221
>gi|268595497|ref|ZP_06129664.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
gi|268597551|ref|ZP_06131718.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
gi|293399346|ref|ZP_06643511.1| phage repressor protein, phage associated protein [Neisseria
gonorrhoeae F62]
gi|268548886|gb|EEZ44304.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
gi|268551339|gb|EEZ46358.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
gi|291610760|gb|EFF39870.1| phage repressor protein, phage associated protein [Neisseria
gonorrhoeae F62]
Length = 229
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 141 KTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM + I + + G ++ + G K LI + G S+ + S N
Sbjct: 144 TLTGDSMEEKIAEDAAIAVDTGETAIRDG-KIYAFAQDGMFRVKYLIRQPGNSVLIRSHN 202
Query: 200 CC-YPVDTVEMSDIEWIARILWAS 222
YP +T + + I R+ W S
Sbjct: 203 SGFYPDETAPLDSLSVIGRVFWWS 226
>gi|194099447|ref|YP_002002559.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae NCCP11945]
gi|239999684|ref|ZP_04719608.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae 35/02]
gi|240127870|ref|ZP_04740531.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae SK-93-1035]
gi|268686265|ref|ZP_06153127.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|193934737|gb|ACF30561.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae NCCP11945]
gi|268626549|gb|EEZ58949.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|317164955|gb|ADV08496.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae TCDC-NG08107]
Length = 234
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 141 KTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM + I + + G ++ + G K LI + G S+ + S N
Sbjct: 149 TLTGDSMEEKIAEDAAIAVDTGETAIRDG-KIYAFAQDGMFRVKYLIRQPGNSVLIRSHN 207
Query: 200 CC-YPVDTVEMSDIEWIARILWAS 222
YP +T + + I R+ W S
Sbjct: 208 SGFYPDETAPLDSLSVIGRVFWWS 231
>gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
[Methylibium petroleiphilum PM1]
gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
[Methylibium petroleiphilum PM1]
Length = 640
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 15/119 (12%)
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
G PE S + + + D + Y + + + +
Sbjct: 217 GRHAAEFETPEQASIEYLVLDLDAIKSGLTVSDDDLRKYYAENESRYVAPEE--RRASHI 274
Query: 172 LIKPRTG-------------DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
LIK G + + +L N P V+ D+++ AR
Sbjct: 275 LIKAEKGASAEQREKARTKAATLLAEARKDPAKFAELAKKNSEDPGSAVQGGDLDFFAR 333
>gi|300812829|ref|ZP_07093224.1| signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496165|gb|EFK31292.1| signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 189
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV--AKVLISRRGRSID 194
SM P + GD LI D ++IK V K LI G ++
Sbjct: 42 ANEVVSGPSMQPTFEDGDRLIAVRHFTPKRNDVVIIKAPNQPAVMYIKRLIGLPGDTVQ 100
>gi|182678402|ref|YP_001832548.1| LexA repressor [Beijerinckia indica subsp. indica ATCC 9039]
gi|229621196|sp|B2IKM0|LEXA_BEII9 RecName: Full=LexA repressor
gi|182634285|gb|ACB95059.1| transcriptional repressor, LexA family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 237
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 13/137 (9%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P +D +E IP++ +G+ + ++ +T+G+P P YA++
Sbjct: 101 PHTDDEDSELTTVAIPVMGRIAAGT------PISALQHRSHTIGLPMDMLPAGEHYALEV 154
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
+ D +I+ GD ++ + K L R SI L
Sbjct: 155 RGDSMIDAG------ILDADTVIIRRQDNAENGDIVVALIDDEEATLKRLRRRGA-SIAL 207
Query: 196 MSLNCCYPVDTVEMSDI 212
N Y +
Sbjct: 208 EPANSAYETRIFGPDRV 224
>gi|46581037|ref|YP_011845.1| transcriptional regulator [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450458|gb|AAS97105.1| transcriptional regulator, putative [Desulfovibrio vulgaris str.
Hildenborough]
Length = 257
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM GD++++N DR+ + +I K N
Sbjct: 167 MEVAGRSMENTLHNGDLVLVNERDVHLVEDRVYVVRVHDEIYVKRFAR-TPGCYHFRGDN 225
Query: 200 CC--YPVDTVEMSD--IEW--IARILWA 221
Y +++ D ++W I R+LWA
Sbjct: 226 RELAYQDISIDPRDENLDWEVIGRVLWA 253
>gi|323440314|gb|EGA98028.1| hypothetical protein SAO11_1051 [Staphylococcus aureus O11]
Length = 192
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
I K+ A + ++ + + K+IP++ +G + + N +
Sbjct: 35 IVKLAKALRVSPSFIMGIDDEQSQLETLPVKKIPVVSKISAGLPIYCEE------NLVDY 88
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ ++ + SM L+ +GD++++ V G ++
Sbjct: 89 IYFSTKNLNP------DKEEFGLQVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMING 142
Query: 178 GDIVAKVLISRRGRSIDL-MSLNCCYPVDTVEM-SDIEWIARIL 219
+ K + + I + S N + +I+ + R++
Sbjct: 143 YNGTVKRIRYNGDQIILIPESNNPNHYPQVYGKDDEIKIVGRVV 186
>gi|291447690|ref|ZP_06587080.1| signal peptidase protein [Streptomyces roseosporus NRRL 15998]
gi|291350637|gb|EFE77541.1| signal peptidase protein [Streptomyces roseosporus NRRL 15998]
Length = 145
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE R G + + SM+P GD+L++ + V GD ++++
Sbjct: 5 PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGVPVRPGDVVILR 58
>gi|225028006|ref|ZP_03717198.1| hypothetical protein EUBHAL_02275 [Eubacterium hallii DSM 3353]
gi|224954720|gb|EEG35929.1| hypothetical protein EUBHAL_02275 [Eubacterium hallii DSM 3353]
Length = 170
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLIKPRTGDIVAKV 184
IQ SM P Y GD +++N D ++++ G
Sbjct: 20 AFLVIQFCFQTVTVHGDSMQPAYYDGDTVLVNKLDYRIGSPKRLDAVILELENGSTTHYS 79
Query: 185 LIS 187
+
Sbjct: 80 VKR 82
>gi|74317501|ref|YP_315241.1| SOS-response transcriptional repressor, LexA [Thiobacillus
denitrificans ATCC 25259]
gi|74056996|gb|AAZ97436.1| peptidase S24, LexA repressor [Thiobacillus denitrificans ATCC
25259]
Length = 261
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D K + SM + GD+L ++ + + G ++++ ++ K R G +
Sbjct: 166 PRADYLLKVRGQSMKDIGILDGDLLAVHRSAEARAG-QVVVARIGDEVTVKRFQKR-GHT 223
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
+ L+ N + V++ E
Sbjct: 224 VQLLPENADFEPIVVDLKRQE 244
>gi|238764118|ref|ZP_04625072.1| LexA repressor [Yersinia kristensenii ATCC 33638]
gi|238798487|ref|ZP_04641966.1| LexA repressor [Yersinia mollaretii ATCC 43969]
gi|238697655|gb|EEP90418.1| LexA repressor [Yersinia kristensenii ATCC 33638]
gi|238717649|gb|EEQ09486.1| LexA repressor [Yersinia mollaretii ATCC 43969]
Length = 202
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENSEFQPIVVDLRE 183
>gi|58338153|ref|YP_194738.1| signal peptidase I [Lactobacillus acidophilus NCFM]
gi|227902666|ref|ZP_04020471.1| possible signal peptidase I [Lactobacillus acidophilus ATCC 4796]
gi|58255470|gb|AAV43707.1| signal peptidase I [Lactobacillus acidophilus NCFM]
gi|227869572|gb|EEJ76993.1| possible signal peptidase I [Lactobacillus acidophilus ATCC 4796]
Length = 210
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P + G LI Q+ G+ +++K G + K +I G I
Sbjct: 41 TVSGPSMQPSFENGQRLISVRHAQIKRGEVVIVKAPDEPGALYIKRVIGMPGEKI 95
>gi|325271359|ref|ZP_08137887.1| putative prophage repressor [Pseudomonas sp. TJI-51]
gi|324103481|gb|EGC00800.1| putative prophage repressor [Pseudomonas sp. TJI-51]
Length = 142
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
E ++PL F FP+ + + + S +
Sbjct: 6 GPLESSGAKLPLFSFHV--------PAGFPSPAA-DHLE--KRISLDELLDVRAPHIYLV 54
Query: 141 KTQDTSM--LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ + SM +Y GD++I++ +I+ G ++I + + K L + + L S
Sbjct: 55 RVEGDSMIGAGIY-PGDLVIVDRSIEAEPG-HIVIAAVNCEPLCKRLARDGSQVV-LKSE 111
Query: 199 NCCYPVDTVEMSD 211
N YP + +
Sbjct: 112 NPRYPSRYLLEGE 124
>gi|323652315|gb|ADX98396.1| phage repressor protein, putative [Campylobacter jejuni]
Length = 115
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL + G I +++ +I R G + K ++ + I L SLN Y
Sbjct: 36 GESMEPLIKDGSICVIDRNKTFKNKSICVINARDG-LFIKQVLKQDDGVI-LHSLNPLYK 93
Query: 204 V 204
Sbjct: 94 D 94
>gi|283956310|ref|ZP_06373790.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792030|gb|EFC30819.1| phage repressor protein, putative [Campylobacter jejuni subsp.
jejuni 1336]
Length = 244
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIVAKVLISR 188
I+ K SM P+ GD +I++ + ++ D ++ + D+ K +
Sbjct: 135 IKKSYDIIKINGDSMEPILSNGDFIIIDRSKNSLETISNADIVIFRKND-DLFCKKIKKE 193
Query: 189 RGRS-IDLMSLNCCYPVDTVEMSDIE 213
+ I L+S N Y V+ S+ E
Sbjct: 194 PFENYIFLVSENKKYEDKKVDNSEFE 219
>gi|148807316|gb|ABR13390.1| hypothetical protein [Pseudomonas aeruginosa]
Length = 143
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + I A + SM+ GD+++++ + +
Sbjct: 24 SAGFPS-PAQDHLEREISLDEILQIRA--PHTYLVRAGGDSMIRAGIHDGDLMVVDRSRE 80
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEW 214
GD ++I G+ K L + G + L + N Y + D + W
Sbjct: 81 AEPGD-IVIAAVNGEPTVKRLA-KDGSQVVLRAENPRYAPRYILEGDELLVW 130
>gi|153952309|ref|YP_001398209.1| putative phage repressor protein [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939755|gb|ABS44496.1| putative phage repressor protein [Campylobacter jejuni subsp.
doylei 269.97]
Length = 239
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLISR 188
I+ K SM P+ GD +I++ + ++ D ++ + D+ K +
Sbjct: 130 IKKSYDIIKINGDSMEPILSNGDFIIVDRSKNSLGAISNADIVIFRKND-DLFCKKIKKE 188
Query: 189 RGRS-IDLMSLNCCYPVDTVEMSDIE 213
+ L+S N Y V+ + E
Sbjct: 189 PFEDYLFLVSENKKYEDKKVDNVEFE 214
>gi|192291621|ref|YP_001992226.1| LexA repressor [Rhodopseudomonas palustris TIE-1]
gi|47605802|sp|P61614|LEXA_RHOPA RecName: Full=LexA repressor
gi|229621744|sp|B3Q6P2|LEXA_RHOPT RecName: Full=LexA repressor
gi|192285370|gb|ACF01751.1| transcriptional repressor, LexA family [Rhodopseudomonas palustris
TIE-1]
Length = 236
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM GD+ ++ + GD ++
Sbjct: 135 TISVPADMLGSGEHYALE-------VRGDSMVEAGILDGDMALIQKNDVADTGDIVVALI 187
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 188 DEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRV 223
>gi|297250266|ref|ZP_06863965.2| putative repressor protein [Neisseria polysaccharea ATCC 43768]
gi|296839394|gb|EFH23332.1| putative repressor protein [Neisseria polysaccharea ATCC 43768]
Length = 190
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 140 HKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ SM + GD ILI ++ + G +L D+ K + G+ + + S
Sbjct: 102 IAVKGDSMEGILNHGDNILINHAETEPRDGLYVL--RIGNDLFVKRVQRMPGKLL-VTSA 158
Query: 199 NCCYPVDTVEMS----DIEWIARILW 220
N Y +++S DI + R+ W
Sbjct: 159 NPHYAPFEIDLSHTDDDIAIVGRVEW 184
>gi|293604579|ref|ZP_06686982.1| phage repressor [Achromobacter piechaudii ATCC 43553]
gi|292816995|gb|EFF76073.1| phage repressor [Achromobacter piechaudii ATCC 43553]
Length = 366
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDR----LLIKPRTGDIVAKVL--ISRRGRSIDLMS 197
SM P+ + G L++ + D + G ++ K + GR + S
Sbjct: 268 GDSMEPVIKDGAALLVVPNEDLTLRDLAGGGVYAINYDGKMIVKTVAKDKLTGRWVA-RS 326
Query: 198 LNCCYPVDTVE-------MSDIEW 214
N YP +E + + W
Sbjct: 327 FNPAYPDIPLENGHPARVLGQVVW 350
>gi|256851171|ref|ZP_05556560.1| signal peptidase I [Lactobacillus jensenii 27-2-CHN]
gi|260660595|ref|ZP_05861510.1| signal peptidase I [Lactobacillus jensenii 115-3-CHN]
gi|282934637|ref|ZP_06339880.1| signal peptidase I [Lactobacillus jensenii 208-1]
gi|297206036|ref|ZP_06923431.1| possible signal peptidase I [Lactobacillus jensenii JV-V16]
gi|256616233|gb|EEU21421.1| signal peptidase I [Lactobacillus jensenii 27-2-CHN]
gi|260548317|gb|EEX24292.1| signal peptidase I [Lactobacillus jensenii 115-3-CHN]
gi|281301212|gb|EFA93513.1| signal peptidase I [Lactobacillus jensenii 208-1]
gi|297149162|gb|EFH29460.1| possible signal peptidase I [Lactobacillus jensenii JV-V16]
Length = 192
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--GDIVAKVLISRRGRSI 193
SM P + GD +I + GD +++ G + K ++ G SI
Sbjct: 45 TVSGPSMQPTFENGDRIIALRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSI 99
>gi|77462544|ref|YP_352048.1| LexA repressor [Rhodobacter sphaeroides 2.4.1]
gi|332557429|ref|ZP_08411751.1| LexA repressor [Rhodobacter sphaeroides WS8N]
gi|6685608|sp|Q9ZFA4|LEXA_RHOS4 RecName: Full=LexA repressor
gi|4185550|gb|AAD09122.1| LexA repressor [Rhodobacter sphaeroides]
gi|77386962|gb|ABA78147.1| LexA repressor [Rhodobacter sphaeroides 2.4.1]
gi|332275141|gb|EGJ20456.1| LexA repressor [Rhodobacter sphaeroides WS8N]
Length = 228
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAI 133
LP ++PL+ +G + +V VP + G YA+
Sbjct: 90 LPKGAVTVETAGALDLPLMGRIAAGL------PIEAINGGPQSVTVPGMMLSGRGQHYAL 143
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GDI+++ + GD ++ + K RRG
Sbjct: 144 E-------VKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADHEATLKR-YRRRGGM 195
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L N Y ++ R++
Sbjct: 196 IALEPANDSYETQVYPEQMVKVQGRLV 222
>gi|126461478|ref|YP_001042592.1| LexA repressor [Rhodobacter sphaeroides ATCC 17029]
gi|171855217|sp|A3PHK4|LEXA_RHOS1 RecName: Full=LexA repressor
gi|126103142|gb|ABN75820.1| SOS-response transcriptional repressor, LexA [Rhodobacter
sphaeroides ATCC 17029]
Length = 227
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAI 133
LP ++PL+ +G + +V VP + G YA+
Sbjct: 89 LPKGAVTVETAGALDLPLMGRIAAGL------PIEAINGGPQSVTVPGMMLSGRGQHYAL 142
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GDI+++ + GD ++ + K RRG
Sbjct: 143 E-------VKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADHEATLKR-YRRRGGM 194
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
I L N Y ++ R++
Sbjct: 195 IALEPANDSYETQVYPEQMVKVQGRLV 221
>gi|124267055|ref|YP_001021059.1| LexA repressor [Methylibium petroleiphilum PM1]
gi|171769835|sp|A2SGY5|LEXA_METPP RecName: Full=LexA repressor
gi|124259830|gb|ABM94824.1| SOS-response transcriptional repressor, LexA [Methylibium
petroleiphilum PM1]
Length = 225
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 121 PEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
P + H + YAI+ D K + SM GD+L + A + G ++
Sbjct: 110 PILAQEHIDQSYAIEASMFPRRPDYLLKVRGMSMRDAGILDGDLLAVQKAREAKNGQIVV 169
Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+ ++ K RG +I+L+ N + V E
Sbjct: 170 ARLGD-EVTVKRFRRVRG-TIELLPENPDFEPIVVTPESGE 208
>gi|289647504|ref|ZP_06478847.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 2250]
Length = 202
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + + SM + GD+L +++ +V G ++ + ++ K +
Sbjct: 111 PSANYLLRVHGMSMKDVGILDGDLLAVHTTREVRNGQIVVARIGD-EVTVKRFKREGSK- 168
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
+ L++ N + V++ D E
Sbjct: 169 VWLLAENPDFAPIEVDLKDQE 189
>gi|171185445|ref|YP_001794364.1| peptidase S26B, signal peptidase [Thermoproteus neutrophilus
V24Sta]
gi|170934657|gb|ACB39918.1| peptidase S26B, signal peptidase [Thermoproteus neutrophilus
V24Sta]
Length = 368
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT-SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
P + + + + R T SM PLY+ GD++ + GD +L + G
Sbjct: 224 PAVGAVALAAFLVGAFGVRPFVVATGSMSPLYQPGDVVFVVPIRHAEVGDVVLYRADFGY 283
Query: 180 IVAKVL--ISRRGRS--IDLMSLNCCYPVDTVEMSDI 212
++ +V+ GR+ I N V +
Sbjct: 284 VLHRVIDVREVGGRTYYITKGDANPTPDARPVPQEAV 320
>gi|254238745|ref|ZP_04932068.1| ultraviolet light resistance protein A [Pseudomonas aeruginosa
C3719]
gi|126170676|gb|EAZ56187.1| ultraviolet light resistance protein A [Pseudomonas aeruginosa
C3719]
Length = 143
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + I A + SM+ GD+++++ + +
Sbjct: 24 SAGFPS-PAQDHLEREISLDEILQIRA--PHTYLVRAGGDSMIRAGIHDGDLMVVDRSRE 80
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEW 214
GD ++I G+ K L + G + L + N Y + D + W
Sbjct: 81 AEPGD-IVIAAVNGEPTVKRLA-KDGNQVVLRAENPRYAPRYILEGDELLVW 130
>gi|117927775|ref|YP_872326.1| putative phage repressor [Acidothermus cellulolyticus 11B]
gi|117648238|gb|ABK52340.1| putative phage repressor [Acidothermus cellulolyticus 11B]
Length = 138
Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDLMSLN 199
+ SMLP GD L++ +++ GD ++ + G +V K L L+S N
Sbjct: 27 VEGASMLPTLHSGDCLLVVRTSRLHPGDMVVARHPREPGRLVVKRLAWETETGWWLVSDN 86
Query: 200 CCYP 203
P
Sbjct: 87 PQAP 90
>gi|254452892|ref|ZP_05066329.1| SOS-response transcriptional repressor [Octadecabacter antarcticus
238]
gi|198267298|gb|EDY91568.1| SOS-response transcriptional repressor [Octadecabacter antarcticus
238]
Length = 144
Score = 37.2 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
S FP+ + + + +P + + + + + + R GDI+ ++ A +
Sbjct: 25 SAGFPSPAGDD---LEDEIAPISWVVRHPSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGK 81
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G R ++ G + AK+L R GR L N +E+++
Sbjct: 82 RRVG-RAVLAVVEGAVTAKILRKRDGRYF-LAPANSKESFPDIELTE 126
>gi|123444033|ref|YP_001008003.1| LexA repressor [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|238760283|ref|ZP_04621426.1| LexA repressor [Yersinia aldovae ATCC 35236]
gi|238782916|ref|ZP_04626944.1| LexA repressor [Yersinia bercovieri ATCC 43970]
gi|332163195|ref|YP_004299772.1| LexA repressor [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|166224656|sp|A1JRT9|LEXA_YERE8 RecName: Full=LexA repressor
gi|122090994|emb|CAL13877.1| LexA repressor [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|238701485|gb|EEP94059.1| LexA repressor [Yersinia aldovae ATCC 35236]
gi|238716119|gb|EEQ08103.1| LexA repressor [Yersinia bercovieri ATCC 43970]
gi|318603920|emb|CBY25418.1| SOS-response repressor and protease LexA [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667425|gb|ADZ44069.1| LexA repressor [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 202
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENSEFQPIVVDLRE 183
>gi|89901452|ref|YP_523923.1| polysaccharide export protein [Rhodoferax ferrireducens T118]
gi|89346189|gb|ABD70392.1| polysaccharide export protein [Rhodoferax ferrireducens T118]
Length = 849
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
+AT + + P + G + + + S G D+ P G + +
Sbjct: 49 SATGFSSGPSVGAPAAAGYPSSAPSTTLSPAAMAAARSAGLTDAAGNPVGPGTDKADLNT 108
Query: 123 IRSPHNGIYA----IQTQDTRHKTQDTS--MLPLY 151
++ A + T QDT+ LPLY
Sbjct: 109 DKTNSESFRAKLPPLGTNQFAKFVQDTTGRTLPLY 143
>gi|120601667|ref|YP_966067.1| phage repressor [Desulfovibrio vulgaris DP4]
gi|120561896|gb|ABM27640.1| putative phage repressor [Desulfovibrio vulgaris DP4]
gi|311234720|gb|ADP87574.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
Length = 244
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM GD++++N DR+ + +I K N
Sbjct: 154 MEVAGRSMENTLHNGDLVLVNERDVHLVEDRVYVVRVHDEIYVKRFAR-TPGCYHFRGDN 212
Query: 200 CC--YPVDTVEMSD--IEW--IARILWA 221
Y +++ D ++W I R+LWA
Sbjct: 213 RELAYQDISIDPRDENLDWEVIGRVLWA 240
>gi|238794668|ref|ZP_04638273.1| LexA repressor [Yersinia intermedia ATCC 29909]
gi|238725974|gb|EEQ17523.1| LexA repressor [Yersinia intermedia ATCC 29909]
Length = 202
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENSEFQPIIVDLRE 183
>gi|304391662|ref|ZP_07373604.1| repressor LexA [Ahrensia sp. R2A130]
gi|303295891|gb|EFL90249.1| repressor LexA [Ahrensia sp. R2A130]
Length = 233
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD +++ GD ++ + K + G SI
Sbjct: 142 GEHYALEVKGDSMIEAGILDGDTVVIQRGDTATPGDIVVALVDHEEATLKRFRRK-GDSI 200
Query: 194 DLMSLNCCYPVDTVEMSDIE 213
L + N Y +
Sbjct: 201 ALEAANPAYETRIFGPDRVA 220
>gi|238752157|ref|ZP_04613639.1| LexA repressor [Yersinia rohdei ATCC 43380]
gi|238709630|gb|EEQ01866.1| LexA repressor [Yersinia rohdei ATCC 43380]
Length = 202
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VQLLPENSEFQPIVVDLRE 183
>gi|325272948|ref|ZP_08139268.1| LexA repressor [Pseudomonas sp. TJI-51]
gi|324101918|gb|EGB99444.1| LexA repressor [Pseudomonas sp. TJI-51]
Length = 202
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 19/131 (14%)
Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
+ E+P+L +G+ P G +G+ E ++ +T D K +
Sbjct: 74 RPEMLEVPVLGQVAAGA---------PIGP---DLGIHEQLLLDPSLFR-RTPDYLLKVR 120
Query: 144 DTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM+ ++ GD++ + G ++ + G++ K L G+ L+ N
Sbjct: 121 GDSMIDDGIF-DGDLVGILQQADARDGQIVVARL-DGEVTIKRLQRV-GKHYRLLPRNPA 177
Query: 202 Y-PVDTVEMSD 211
Y P+D + +
Sbjct: 178 YAPIDVLPTQE 188
>gi|325686082|gb|EGD28136.1| signal peptidase I LepB [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 188
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
SM P + GD LI D ++IK
Sbjct: 41 ANEVVSGPSMQPTFEDGDRLIAVRHFTPKRNDVVIIKAPD 80
>gi|313123852|ref|YP_004034111.1| signal peptidase i [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280415|gb|ADQ61134.1| Signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 188
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
SM P + GD LI D ++IK
Sbjct: 41 ANEVVSGPSMQPTFEDGDRLIAVRHFTPKRNDVVIIKAPD 80
>gi|300812854|ref|ZP_07093249.1| signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496190|gb|EFK31317.1| signal peptidase I [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 188
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
SM P + GD LI D ++IK
Sbjct: 41 ANEVVSGPSMQPTFEDGDRLIAVRHFTPKRNDVVIIKAPD 80
>gi|319762557|ref|YP_004126494.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus
denitrificans BC]
gi|330824653|ref|YP_004387956.1| peptidase S24/S26A/S26B [Alicycliphilus denitrificans K601]
gi|317117118|gb|ADU99606.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus
denitrificans BC]
gi|329310025|gb|AEB84440.1| Peptidase S24/S26A/S26B, conserved region [Alicycliphilus
denitrificans K601]
Length = 161
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 22/127 (17%)
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR------------KGDI 156
P G +G P ++ LYR GD+
Sbjct: 28 LPVGAVHVALGFPSPAEDFEDDR---VDLNEMLVRNPPATFLYRAEGWSMIQAGICDGDV 84
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC------YPVDTVEMS 210
L+++ +++ GD ++ V KVL G ++L N P VE+
Sbjct: 85 LVVDRSVRPQHGDVVIAMWDGNAPVCKVLH-VCGDHVELHGRNPAIASIVLPPDTEVEIF 143
Query: 211 DIEWIAR 217
+ +AR
Sbjct: 144 AVVGVAR 150
>gi|19704910|ref|NP_602405.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|296327734|ref|ZP_06870274.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19712805|gb|AAL93704.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|296155172|gb|EFG95949.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 219
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 111 TGNKWNTVGVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
G + + P+ P G ++ + + SM P G+ +++ +
Sbjct: 99 AGRGYLNMDTPDYYMPILKGNFS--KRSFFVEITGNSMEPTLEDGEFALVDPDNTSYSKN 156
Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMS 210
++ + + K L + + R I L S N Y +
Sbjct: 157 KIYVVTYNDEGYIKRLEMKDKLRVITLKSDNPDYDDIDIPEE 198
>gi|56963932|ref|YP_175663.1| LexA repressor [Bacillus clausii KSM-K16]
gi|71658808|sp|Q5WG03|LEXA_BACSK RecName: Full=LexA repressor
gi|56910175|dbj|BAD64702.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16]
Length = 208
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-- 147
IP++ +G + N + + +P+ + ++ YA+ Q SM
Sbjct: 87 IPVIGKVTAGV------PITAVENVEDYLPLPDHLAAYDNTYAL-------VIQGESMIE 133
Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
+Y GD +I+ + GD ++ + K + I L N +
Sbjct: 134 AGIY-DGDQVIVRQQQTADNGDIIVAMTEDNEATVKRFFREK-DYIRLQPENSSMEPIIL 191
Query: 208 E 208
E
Sbjct: 192 E 192
>gi|153854843|ref|ZP_01996066.1| hypothetical protein DORLON_02071 [Dorea longicatena DSM 13814]
gi|149752545|gb|EDM62476.1| hypothetical protein DORLON_02071 [Dorea longicatena DSM 13814]
Length = 219
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD 179
A+ R T SM P+ + D++++N A GD ++ KP+ +
Sbjct: 64 AFVAVWYWGQRVSTVGDSMSPVLKNADVVLVNRIVYNASSPKRGDVIVFKPKGNE 118
>gi|26988281|ref|NP_743706.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440]
gi|24983026|gb|AAN67170.1|AE016345_5 transcriptional regulator, Cro/CI family [Pseudomonas putida
KT2440]
Length = 283
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
++ Y SM D +I++ + G+ + + GD++
Sbjct: 178 DLLRDKGVNYTAPQSLAIITGWGQSMEGTINDKDPVIVDRGVNDYAGEGVYVLTWHGDLL 237
Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI--------EWIAR 217
K L + + L+S N + D+ W AR
Sbjct: 238 IKRLQRKDEDHLWLISDNPHNKDQQARIDDVTIHAKVLLVWNAR 281
>gi|303245342|ref|ZP_07331626.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
gi|302493191|gb|EFL53053.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
Length = 226
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 146 SMLPLYRKGDIL-ILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
M P+ R G + I +++ G+ + P G ++ +V+ + + L+ N +P
Sbjct: 143 GMEPVIRHGAYVGIDCDDVRLRTGEIYALDFPGEGLVIKRVVRDLEAKRLSLLPDNPSHP 202
Query: 204 VDTVEMSD--IEWIARILWASQ 223
+ + I I + +W Q
Sbjct: 203 AQHLPLETPGITPIGKAVWVIQ 224
>gi|187930849|ref|YP_001901335.1| peptidase S24 and S26 domain protein [Ralstonia pickettii 12J]
gi|187728893|gb|ACD30056.1| peptidase S24 and S26 domain protein [Ralstonia pickettii 12J]
Length = 212
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 6/137 (4%)
Query: 53 PSTESIFKIL--AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
PS I K L A N L S T + P F F
Sbjct: 25 PSYSQIAKALGFKAKNAAFKLTQRLIASGHLTKSVGGRLAPGPAFFTLELSDDEVRAGF- 83
Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
G + G+ + ++ + A ++ K + SML + GD+ ++ ++ Q GD
Sbjct: 84 -GADGDATGLVQAQALDQLLMAKPSKTVLVKVRGDSMLNVGILSGDVAVVETSSQALTGD 142
Query: 170 RLLIKPRTGDIVAKVLI 186
+++ G K
Sbjct: 143 -IVVAEIDGSQTIKEFR 158
>gi|332361288|gb|EGJ39092.1| phage transcriptional repressor [Streptococcus sanguinis SK1056]
Length = 230
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 21/168 (12%)
Query: 53 PST--ESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
P+T ES +KI L + E ++ + + + +K +PL
Sbjct: 57 PTTYFESEYKIVNTYLQLSTENQGKVDEYAEGLLQAQQSHDKVVPLFAVE------VLSD 110
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAI 163
G + +YA + Q D + SM P+Y G++ ++ ++
Sbjct: 111 IALSAGLGESLFD----EYDTETVYAEEEQYGYDIAAWIKGDSMEPIYLDGEVALIRASG 166
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G + + K L ++SLN YP + D
Sbjct: 167 FDYDG-AVYALSWNDSVYIKKLYRE-EHGFRMVSLNDNYPDKWIPYED 212
>gi|309811522|ref|ZP_07705304.1| signal peptidase I [Dermacoccus sp. Ellin185]
gi|308434573|gb|EFP58423.1| signal peptidase I [Dermacoccus sp. Ellin185]
Length = 222
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
SM P Y+ GD ++++ GD ++ V + R L
Sbjct: 55 AETFTVPSRSMQPSYQVGDRIVVDKLHDHPRRGDVIVFSGAD------VFYEQTPRDGVL 108
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
+L+ +D +++ R++
Sbjct: 109 GALDTAAGWLGFRPNDQDYLKRVI 132
>gi|304379184|ref|ZP_07361927.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|304342230|gb|EFM08126.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
Length = 238
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 152 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 209
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 210 LTLVSLNKKYKDLYF 224
>gi|298695210|gb|ADI98432.1| phage repressor protein, putative [Staphylococcus aureus subsp.
aureus ED133]
Length = 227
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 141 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 198
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 199 LTLVSLNKKYKDLYF 213
>gi|258454473|ref|ZP_05702440.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937]
gi|257863330|gb|EEV86091.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937]
Length = 238
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 152 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 209
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 210 LTLVSLNKKYKDLYF 224
>gi|148268470|ref|YP_001247413.1| phage repressor [Staphylococcus aureus subsp. aureus JH9]
gi|150394533|ref|YP_001317208.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
JH1]
gi|257136362|ref|YP_003169636.1| cI repressor-like protein [Staphylococcus phage P954]
gi|257793283|ref|ZP_05642262.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258419779|ref|ZP_05682742.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719]
gi|282904658|ref|ZP_06312533.1| putative prophage L54a, repressor protein [Staphylococcus aureus
subsp. aureus C160]
gi|295407324|ref|ZP_06817122.1| phage repressor [Staphylococcus aureus A8819]
gi|297246908|ref|ZP_06930688.1| conserved hypothetical protein [Staphylococcus aureus A8796]
gi|147741539|gb|ABQ49837.1| putative phage repressor [Staphylococcus aureus subsp. aureus JH9]
gi|149946985|gb|ABR52921.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
JH1]
gi|256681204|gb|ACV04947.1| cI repressor-like protein [Staphylococcus phage P954]
gi|257787255|gb|EEV25595.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257844190|gb|EEV68576.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719]
gi|282594907|gb|EFB99883.1| putative prophage L54a, repressor protein [Staphylococcus aureus
subsp. aureus C160]
gi|294967769|gb|EFG43800.1| phage repressor [Staphylococcus aureus A8819]
gi|297176260|gb|EFH35547.1| conserved hypothetical protein [Staphylococcus aureus A8796]
gi|315128291|gb|EFT84315.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
CGS03]
gi|329728105|gb|EGG64548.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus
21172]
Length = 238
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D K SM PL++ G I+ + + + G ++ + GD K + R
Sbjct: 152 VPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDG-QIGVFIINGDAYVKKVYVEDNR- 209
Query: 193 IDLMSLNCCYPVDTV 207
+ L+SLN Y
Sbjct: 210 LTLVSLNKKYKDLYF 224
>gi|325262272|ref|ZP_08129009.1| signal peptidase I [Clostridium sp. D5]
gi|324032104|gb|EGB93382.1| signal peptidase I [Clostridium sp. D5]
Length = 222
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 143 QDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVLIS---RRGRSIDL 195
SM P+ + GD++++N A + GD + KP + + G ++ +
Sbjct: 80 AGDSMKPVLKNGDVVLVNRLVYNASKPKRGDIIAFKPNGNENTHYSIKRIVGLPGETVQI 139
Query: 196 MS----LNCCYPVDTVEMSDIE 213
+N + DIE
Sbjct: 140 KDGKVFINDEEVTQHIYAEDIE 161
>gi|320538859|ref|ZP_08038535.1| DNA-binding transcriptional repressor of SOS regulon [Serratia
symbiotica str. Tucson]
gi|320031019|gb|EFW13022.1| DNA-binding transcriptional repressor of SOS regulon [Serratia
symbiotica str. Tucson]
Length = 202
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDI 156
D P P + H G Y + D + SM + GD+
Sbjct: 72 DEEGLPLIGGVAAGE-PLLAQQHIEGHYKVDPSLFKPNADFLLRVIGMSMRDIGILDGDL 130
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
L + V G ++++ ++ K L + G ++L+ N + V++
Sbjct: 131 LAVYKTQDVRNG-QVIVARIEDEVTVKRL-KKSGNMVELLPENNEFQPIVVDLRQ 183
>gi|119505861|ref|ZP_01627926.1| LexA repressor [marine gamma proteobacterium HTCC2080]
gi|119458289|gb|EAW39399.1| LexA repressor [marine gamma proteobacterium HTCC2080]
Length = 199
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM+ GD+L + + V ++++ ++ K L +
Sbjct: 107 PRADYLLRVSGDSMINAGILDGDLLAV-HSTPVAAEQQIVVARIDDEVTVKRLHRPNSQH 165
Query: 193 IDLMSLNCCYPVDTVEMS 210
+ L++ N Y V+++
Sbjct: 166 VMLLAENEDYAPIKVDLA 183
>gi|302521880|ref|ZP_07274222.1| signal peptidase [Streptomyces sp. SPB78]
gi|302430775|gb|EFL02591.1| signal peptidase [Streptomyces sp. SPB78]
Length = 200
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
SMLP R GD L++ +V GD ++++
Sbjct: 3 GPSMLPTLRHGDRLLVRYGARVRPGDVVVLR 33
>gi|261363945|ref|ZP_05976828.1| putative repressor protein [Neisseria mucosa ATCC 25996]
gi|288567968|gb|EFC89528.1| putative repressor protein [Neisseria mucosa ATCC 25996]
Length = 190
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 140 HKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
+ SM + GD ILI ++ + G +L D+ K + G+ + + S
Sbjct: 102 IAVKGDSMEGILNHGDNILINHAETEPRDGLYVL--RIGNDLFVKRVQRMPGKLL-VTSA 158
Query: 199 NCCYPVDTVEMS----DIEWIARILW 220
N Y +++S DI + R+ W
Sbjct: 159 NPHYAPFEIDLSHTDDDIAIVGRVEW 184
>gi|257867799|ref|ZP_05647452.1| signal peptidase I [Enterococcus casseliflavus EC30]
gi|257874126|ref|ZP_05653779.1| signal peptidase I [Enterococcus casseliflavus EC10]
gi|257876690|ref|ZP_05656343.1| signal peptidase I [Enterococcus casseliflavus EC20]
gi|257801882|gb|EEV30785.1| signal peptidase I [Enterococcus casseliflavus EC30]
gi|257808290|gb|EEV37112.1| signal peptidase I [Enterococcus casseliflavus EC10]
gi|257810856|gb|EEV39676.1| signal peptidase I [Enterococcus casseliflavus EC20]
Length = 182
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM ++GD++++ + D ++ + G K +I G S+
Sbjct: 37 PVEGNSMEGTLQQGDMVVIEKISPIQRFDVVVFQLPDGSTYIKRVIGLPGESV 89
>gi|240014426|ref|ZP_04721339.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae DGI18]
gi|240081451|ref|ZP_04725994.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae FA19]
gi|240120855|ref|ZP_04733817.1| Putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae PID24-1]
Length = 180
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 141 KTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM + I + + G ++ + G K LI + G S+ + S N
Sbjct: 95 TLTGDSMEEKIAEDAAIAVDTGETAIRDG-KIYAFAQDGMFRVKYLIRQPGNSVLIRSHN 153
Query: 200 CC-YPVDTVEMSDIEWIARILWAS 222
YP +T + + I R+ W S
Sbjct: 154 SGFYPDETAPLDSLSVIGRVFWWS 177
>gi|71276700|ref|ZP_00652969.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
fastidiosa Dixon]
gi|71162492|gb|EAO12225.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
fastidiosa Dixon]
Length = 224
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
SM+P+ + G+++++++ IQ GD + + K L R G ++ ++S N Y
Sbjct: 141 CGDSMIPVIQPGEVVLVDTGIQSFDGDGIYLINIGHGQQIKALQDR-GDAVYVVSANPLY 199
Query: 203 PVDTVEMS 210
Sbjct: 200 QPIPFPSE 207
>gi|212710565|ref|ZP_03318693.1| hypothetical protein PROVALCAL_01628 [Providencia alcalifaciens DSM
30120]
gi|212686802|gb|EEB46330.1| hypothetical protein PROVALCAL_01628 [Providencia alcalifaciens DSM
30120]
Length = 205
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V+ G ++++ ++ K + R
Sbjct: 110 PHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNG-QIVVARIEDEVTVKRFKQQGNR- 167
Query: 193 IDLMSLNCCYPVDTVEMSD 211
++L++ N + V++ +
Sbjct: 168 VELIAENPEFAPIVVDLRE 186
>gi|299534261|ref|ZP_07047610.1| putative phage repressor [Comamonas testosteroni S44]
gi|298717719|gb|EFI58727.1| putative phage repressor [Comamonas testosteroni S44]
Length = 226
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM P + G +L++N A + + G+++ K +
Sbjct: 135 PANAAIVTVRGASMEPTIKDGAVLLINKADREPRAGHIYAFSWDGEMMVKRFFKVNDGWV 194
Query: 194 DLMSLNCCYPVDTVE-MSDIEWIARILW 220
S N + ++ ++ R +W
Sbjct: 195 A-RSDNPDHDDILIDGATETAVQGRAIW 221
>gi|289642892|ref|ZP_06475027.1| putative phage repressor [Frankia symbiont of Datisca glomerata]
gi|289507275|gb|EFD28239.1| putative phage repressor [Frankia symbiont of Datisca glomerata]
Length = 118
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
SM P R GD ++ + GD ++ + + K
Sbjct: 23 VSGRSMTPTLRDGDACVVLWGMSPRVGDVVVARLPGRGLGVK 64
>gi|153814905|ref|ZP_01967573.1| hypothetical protein RUMTOR_01120 [Ruminococcus torques ATCC 27756]
gi|317500417|ref|ZP_07958641.1| LexA repressor [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089576|ref|ZP_08338475.1| LexA repressor [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847936|gb|EDK24854.1| hypothetical protein RUMTOR_01120 [Ruminococcus torques ATCC 27756]
gi|316898172|gb|EFV20219.1| LexA repressor [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404944|gb|EGG84482.1| LexA repressor [Lachnospiraceae bacterium 3_1_46FAA]
Length = 205
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
T ++ +P++ +G + N + VP R P+ + ++ +
Sbjct: 78 TRREMVHVPIIGQVAAG------EPILAQENIEDYWPVPADRMPNKQTFFLKVKGESMIN 131
Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
GD++++ + GD ++ G V
Sbjct: 132 AG------ILDGDMVLVEEDSTASNGDMVVALIEDGATV 164
>gi|256061227|ref|ZP_05451378.1| LexA repressor [Brucella neotomae 5K33]
gi|261325234|ref|ZP_05964431.1| LexA repressor [Brucella neotomae 5K33]
gi|261301214|gb|EEY04711.1| LexA repressor [Brucella neotomae 5K33]
Length = 240
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P N + + G YA++ + SM+ GD +I+
Sbjct: 125 AAGVPISAIQNQTHMLSLPPEMIGAGEHYALE-------VKGDSMIDAGIFDGDTVIIKR 177
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
N G+ ++ + K L SI L + N Y +
Sbjct: 178 GDTANPGEIVVALVDEEEATLKRLRREGA-SIALEAANPAYETRIFGPDRV 227
>gi|297201928|ref|ZP_06919325.1| signal peptidase I [Streptomyces sviceus ATCC 29083]
gi|197712696|gb|EDY56730.1| signal peptidase I [Streptomyces sviceus ATCC 29083]
Length = 152
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
++ SMLP YR D +++ I G ++++ + + + L
Sbjct: 23 LRRHLVVVTVVGHSMLPTYRPNDRVLVRRGIVPKRGGVVVVELPSTERRSWEL 75
>gi|317052815|ref|YP_004119581.1| peptidase S24/S26A/S26B [Pantoea sp. At-9b]
gi|316953555|gb|ADU73025.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b]
Length = 168
Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + V + + +SM L GD+++++ A +
Sbjct: 51 PAGFPSPAA-DYVE--SELDLNELCIRRPAASYFVRASGSSMEDLGLFDGDVMVVDRAEE 107
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
GD ++I G+ K L + L+ ++ YP + ++ + + W
Sbjct: 108 ACHGD-VVIAEVNGEFTVKRLQLHP--RLALLPMSPAYP--AIYPESLQLMGVVTW 158
>gi|121998520|ref|YP_001003307.1| SOS-response transcriptional repressor, LexA [Halorhodospira
halophila SL1]
gi|166224633|sp|A1WXU3|LEXA_HALHL RecName: Full=LexA repressor
gi|121589925|gb|ABM62505.1| SOS-response transcriptional repressor, LexA [Halorhodospira
halophila SL1]
Length = 226
Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 16/142 (11%)
Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
T+ +P++ +GS + + E +
Sbjct: 70 DAFAGAAPEPSPATDDPNAGLPVVGRVAAGSPLLAEESI-------------ERYCQVDA 116
Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
D + + SM GD+L + + G ++++ ++ K L
Sbjct: 117 SLFSPPADYLLRVRGESMRDAGILDGDLLAVRRDTEARDGQIVVVRLHD-EVTVKFLERC 175
Query: 189 RGRSIDLMSLNCCYPVDTVEMS 210
G + L+ + YPV V
Sbjct: 176 NG-VLRLIPAHPDYPVIEVAAD 196
>gi|317493024|ref|ZP_07951448.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919146|gb|EFV40481.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 255
Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV-AKVLISRRG 190
A SM P+ +G + ++ D + GD++ K L
Sbjct: 160 ADPACTIAFPVHGHSMEPVIPEGTTVTVD-LANKRIIDGAIYAIDHGDLLRVKQLFRLPN 218
Query: 191 RSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219
+ + + S N +P + + +E I R++
Sbjct: 219 KKLSIRSYNKIDFPDEEADQDSVEIIGRVI 248
>gi|255019440|ref|ZP_05291546.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC
51756]
gi|254971117|gb|EET28573.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC
51756]
Length = 158
Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD ++++ AI G R+++ GD+ K L R G ++ L++ N +P + +
Sbjct: 87 DGDEILVDRAITPTDG-RIVVAAINGDLTVKRL-RRIGGAVHLVAENPEFPPIVLHEGE 143
>gi|289582738|ref|YP_003481204.1| extracellular ligand-binding receptor [Natrialba magadii ATCC
43099]
gi|289532291|gb|ADD06642.1| Extracellular ligand-binding receptor [Natrialba magadii ATCC
43099]
Length = 425
Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
+ + + SG FD P ++ + + A + D + D S
Sbjct: 177 ISYQGASSGVNFDDVGDPADAGYDVWEFGDDGTETIDTIAFEGDDPDGEMADDS 230
>gi|37930231|gb|AAP76282.1| unknown [Pseudomonas sp. PCL1171]
Length = 244
Score = 36.8 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 28/219 (12%)
Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
+ +R ++P+ L R+ G+ ++ ++ + G+ PS + I +I L
Sbjct: 13 LLDRDRISPTELHRRTGVPQSTLSR----ILSGKIVDPSDKHISRIAEYFRVGTDYLRGR 68
Query: 76 P-FSDGRTTEKKEKEIPLLYFPPSGSGG----------FFDSGVFPTGNKWNTVGVPEIR 124
R + L F G+ + E
Sbjct: 69 AAVGAQRDEGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEESEKA 128
Query: 125 SPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIK 174
S G +++ + + SMLP+ R G + +N+ + GD L
Sbjct: 129 SLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSGIGDIVDGD-LYAI 187
Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI 212
G + K L I L S N +P + DI
Sbjct: 188 NHNGQLRVKQLYRL-PSGIRLRSFNRDEHPDEDYSFQDI 225
>gi|33866116|ref|NP_897675.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
WH 8102]
gi|33639091|emb|CAE08097.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
WH 8102]
Length = 234
Score = 36.8 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 21/140 (15%)
Query: 85 KKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
IP+L G FD + + G++A+
Sbjct: 105 AAAAGIPVLGAVAAGGLVTAFDDVQ-------EHLDL-APVLETRGLFAL-------TVN 149
Query: 144 DTSMLPL-YRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM+ GD++++ G + K + ++ L + N
Sbjct: 150 GDSMVDAHIADGDVVLMEPVPDPQRLRNGTVVSALVAGSGTTLKHFHRKGA-AVVLEAAN 208
Query: 200 CCYPVDTVEMSDIEWIARIL 219
Y + +E R++
Sbjct: 209 PAYDPIELPAEQVEVQGRLV 228
>gi|85708726|ref|ZP_01039792.1| LexA repressor [Erythrobacter sp. NAP1]
gi|85690260|gb|EAQ30263.1| LexA repressor [Erythrobacter sp. NAP1]
Length = 234
Score = 36.8 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 16/142 (11%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
+ EIPL +G+ N++ VP YA
Sbjct: 95 ASSVMARAPEPANDVIEIPLHGRIAAGAP-------IEALEGQNSLPVPAALLGPGEHYA 147
Query: 133 IQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
++ SM GD ++ G+ ++ R + K L
Sbjct: 148 LE-------VSGDSMIEAGIFDGDFALVRRTNTARDGEIVVALVRGEEATLKYLHKEGA- 199
Query: 192 SIDLMSLNCCYPVDTVEMSDIE 213
+ L N Y ++E
Sbjct: 200 MVRLDPANATYDAQVYGPDEVE 221
>gi|209544672|ref|YP_002276901.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
gi|209532349|gb|ACI52286.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
Length = 289
Score = 36.8 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI----SRRGRSIDL 195
+ SM P Y+ G+ +++++A + + + +V K L S S+ +
Sbjct: 200 LRVAGDSMEPDYQAGERVLVDTAHRTPSPPGVYVLWDGFGLVLKRLEIVYGSEDPVSVQI 259
Query: 196 MSLNCCYPVDTVEMSDIEWIARIL--WA 221
MS+N YP T + ++ R++ W
Sbjct: 260 MSINPGYPTYTRALDEVHINGRVVGKWV 287
>gi|297157339|gb|ADI07051.1| hypothetical protein SBI_03930 [Streptomyces bingchenggensis BCW-1]
Length = 178
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ + SM+P GD L++ V GD ++++
Sbjct: 37 EVYNPSMVPTLNPGDRLVVRYGAAVRAGDVVVLR 70
>gi|254504047|ref|ZP_05116198.1| LexA repressor [Labrenzia alexandrii DFL-11]
gi|222440118|gb|EEE46797.1| LexA repressor [Labrenzia alexandrii DFL-11]
Length = 227
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
++ VP YA++ + SM GD +++ + GD ++
Sbjct: 126 SISVPPELLGKGEHYALE-------VRGDSMIEAGILDGDTVLIRRTESADSGDIVVALV 178
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K L + SI L + N Y +
Sbjct: 179 DDEEATLKRLRKKGP-SIALEAANPAYETRIFGPGRV 214
>gi|117928686|ref|YP_873237.1| LexA repressor [Acidothermus cellulolyticus 11B]
gi|171460816|sp|A0LUZ1|LEXA_ACIC1 RecName: Full=LexA repressor
gi|117649149|gb|ABK53251.1| SOS-response transcriptional repressor, LexA [Acidothermus
cellulolyticus 11B]
Length = 275
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 18/143 (12%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
+ +PL+ +G + + + V +P ++ +Q
Sbjct: 144 PSPIDSNPDVVAVPLVGRIAAGGPALAEQLI------EDVVPLPRQLVGEGTLFLLQ--- 194
Query: 138 TRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
+ SM+ GD +++ GD ++ G+ K R I LM
Sbjct: 195 ----VKGDSMVDAAICDGDWVVVRQQPVAENGD-IVAAMIDGEATVKTFKRRGA-HIWLM 248
Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
N Y + + + R++
Sbjct: 249 PHNPQYEP--IPGDEATILGRVV 269
>gi|91206309|ref|YP_538663.1| UV protection and mutation protein [Escherichia coli UTI89]
gi|191174393|ref|ZP_03035897.1| protein ImpA [Escherichia coli F11]
gi|218692925|ref|YP_002406037.1| UV protection and mutation protein [Escherichia coli UMN026]
gi|256855308|ref|YP_003162552.1| DNA repair protein UmuD [Escherichia coli]
gi|293404641|ref|ZP_06648634.1| ImpA protein [Escherichia coli FVEC1412]
gi|300897127|ref|ZP_07115584.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
gi|91075760|gb|ABE10640.1| UV protection and mutation protein [Escherichia coli UTI89]
gi|190905326|gb|EDV64961.1| protein ImpA [Escherichia coli F11]
gi|218350088|emb|CAQ87505.1| UV protection and mutation protein [Escherichia coli UMN026]
gi|256275520|gb|ACU68793.1| DNA repair protein UmuD [Escherichia coli]
gi|281181675|dbj|BAI58004.1| ImpA protein [Escherichia coli SE15]
gi|291428353|gb|EFF01379.1| ImpA protein [Escherichia coli FVEC1412]
gi|300359069|gb|EFJ74939.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
gi|307629853|gb|ADN74156.1| DNA repair protein UmuD [Escherichia coli UM146]
gi|315290862|gb|EFU50231.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
gi|323954217|gb|EGB50005.1| peptidase S24 [Escherichia coli H263]
gi|324005329|gb|EGB74548.1| peptidase S24-like domain protein [Escherichia coli MS 57-2]
Length = 145
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + ++ + +T SM + GD+L+++ A +
Sbjct: 28 AGFPS-PATDYAE--QELDLNSYCISRPAATFFLRTSGESMNQAGVQNGDLLVVDRAEKP 84
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD ++I G+ K L+ R +++ +S + + T+ +I
Sbjct: 85 QHGD-IVIAEIDGEFTVKRLLLRPRPALEPVSDSPEF--RTLYPENI 128
>gi|22124486|ref|NP_667909.1| LexA repressor [Yersinia pestis KIM 10]
gi|45440324|ref|NP_991863.1| LexA repressor [Yersinia pestis biovar Microtus str. 91001]
gi|51594724|ref|YP_068915.1| LexA repressor [Yersinia pseudotuberculosis IP 32953]
gi|108809960|ref|YP_653876.1| LexA repressor [Yersinia pestis Antiqua]
gi|108813515|ref|YP_649282.1| LexA repressor [Yersinia pestis Nepal516]
gi|145600904|ref|YP_001164980.1| LexA repressor [Yersinia pestis Pestoides F]
gi|150260639|ref|ZP_01917367.1| LexA repressor [Yersinia pestis CA88-4125]
gi|153950737|ref|YP_001402724.1| LexA repressor [Yersinia pseudotuberculosis IP 31758]
gi|162419551|ref|YP_001605833.1| LexA repressor [Yersinia pestis Angola]
gi|165926677|ref|ZP_02222509.1| LexA repressor [Yersinia pestis biovar Orientalis str. F1991016]
gi|165936375|ref|ZP_02224943.1| LexA repressor [Yersinia pestis biovar Orientalis str. IP275]
gi|166010401|ref|ZP_02231299.1| LexA repressor [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213964|ref|ZP_02239999.1| LexA repressor [Yersinia pestis biovar Antiqua str. B42003004]
gi|167402457|ref|ZP_02307914.1| LexA repressor [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167418922|ref|ZP_02310675.1| LexA repressor [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167426198|ref|ZP_02317951.1| LexA repressor [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167467145|ref|ZP_02331849.1| LexA repressor [Yersinia pestis FV-1]
gi|170026073|ref|YP_001722578.1| LexA repressor [Yersinia pseudotuberculosis YPIII]
gi|186893727|ref|YP_001870839.1| LexA repressor [Yersinia pseudotuberculosis PB1/+]
gi|218927520|ref|YP_002345395.1| LexA repressor [Yersinia pestis CO92]
gi|229836571|ref|ZP_04456737.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis Pestoides A]
gi|229840179|ref|ZP_04460338.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229842261|ref|ZP_04462416.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis biovar Orientalis str. India 195]
gi|229904001|ref|ZP_04519114.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis Nepal516]
gi|270489014|ref|ZP_06206088.1| repressor LexA [Yersinia pestis KIM D27]
gi|294502381|ref|YP_003566443.1| LexA repressor [Yersinia pestis Z176003]
gi|25453097|sp|Q8ZJ16|LEXA_YERPE RecName: Full=LexA repressor
gi|71658818|sp|Q66FG7|LEXA_YERPS RecName: Full=LexA repressor
gi|123072492|sp|Q1C0U1|LEXA_YERPA RecName: Full=LexA repressor
gi|123246202|sp|Q1CE98|LEXA_YERPN RecName: Full=LexA repressor
gi|166224657|sp|A4TRU5|LEXA_YERPP RecName: Full=LexA repressor
gi|166990804|sp|A7FN96|LEXA_YERP3 RecName: Full=LexA repressor
gi|229470193|sp|B2K1U7|LEXA_YERPB RecName: Full=LexA repressor
gi|229470194|sp|A9R273|LEXA_YERPG RecName: Full=LexA repressor
gi|229470195|sp|B1JNE3|LEXA_YERPY RecName: Full=LexA repressor
gi|21957278|gb|AAM84160.1|AE013659_4 regulator for SOS(lexA) regulon [Yersinia pestis KIM 10]
gi|45435180|gb|AAS60740.1| LexA repressor [Yersinia pestis biovar Microtus str. 91001]
gi|51588006|emb|CAH19610.1| LexA repressor [Yersinia pseudotuberculosis IP 32953]
gi|108777163|gb|ABG19682.1| SOS-response transcriptional repressor, LexA [Yersinia pestis
Nepal516]
gi|108781873|gb|ABG15931.1| SOS-response transcriptional repressor, LexA [Yersinia pestis
Antiqua]
gi|115346131|emb|CAL18999.1| LexA repressor [Yersinia pestis CO92]
gi|145212600|gb|ABP42007.1| SOS-response transcriptional repressor, LexA [Yersinia pestis
Pestoides F]
gi|149290047|gb|EDM40124.1| LexA repressor [Yersinia pestis CA88-4125]
gi|152962232|gb|ABS49693.1| LexA repressor [Yersinia pseudotuberculosis IP 31758]
gi|162352366|gb|ABX86314.1| LexA repressor [Yersinia pestis Angola]
gi|165915491|gb|EDR34100.1| LexA repressor [Yersinia pestis biovar Orientalis str. IP275]
gi|165921300|gb|EDR38524.1| LexA repressor [Yersinia pestis biovar Orientalis str. F1991016]
gi|165990491|gb|EDR42792.1| LexA repressor [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204939|gb|EDR49419.1| LexA repressor [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962916|gb|EDR58937.1| LexA repressor [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048145|gb|EDR59553.1| LexA repressor [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167054909|gb|EDR64711.1| LexA repressor [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169752607|gb|ACA70125.1| transcriptional repressor, LexA family [Yersinia pseudotuberculosis
YPIII]
gi|186696753|gb|ACC87382.1| transcriptional repressor, LexA family [Yersinia pseudotuberculosis
PB1/+]
gi|229679771|gb|EEO75874.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis Nepal516]
gi|229690571|gb|EEO82625.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis biovar Orientalis str. India 195]
gi|229696545|gb|EEO86592.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229706255|gb|EEO92263.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
pestis Pestoides A]
gi|262360464|gb|ACY57185.1| LexA repressor [Yersinia pestis D106004]
gi|262364410|gb|ACY60967.1| LexA repressor [Yersinia pestis D182038]
gi|270337518|gb|EFA48295.1| repressor LexA [Yersinia pestis KIM D27]
gi|294352840|gb|ADE63181.1| LexA repressor [Yersinia pestis Z176003]
Length = 202
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D + SM + GD+L ++ V G ++++ ++ K L + G
Sbjct: 107 PGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNG-QVVVARIDDEVTVKRLKKQ-GNI 164
Query: 193 IDLMSLNCCYPVDTVEMSD 211
+ L+ N + V++ +
Sbjct: 165 VHLLPENSEFQPIVVDLRE 183
>gi|238920196|ref|YP_002933711.1| repressor protein CI [Edwardsiella ictaluri 93-146]
gi|238869765|gb|ACR69476.1| repressor protein CI [Edwardsiella ictaluri 93-146]
Length = 223
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
++ + SM P + +G +++++ V D + + + K LI
Sbjct: 125 SRSFWLEVDGASMTAPAGNRPSFPEGMLILVDPDQDVEVNDFCIARVNGNEFTFKKLIRD 184
Query: 189 RGRSIDLMSLNCCYPVDTVE 208
G + L LN +P+ T
Sbjct: 185 SGINY-LQPLNPQFPLLTCS 203
>gi|172046707|sp|Q3SIT9|LEXA_THIDA RecName: Full=LexA repressor
Length = 200
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
D K + SM + GD+L ++ + + G ++++ ++ K R G +
Sbjct: 105 PRADYLLKVRGQSMKDIGILDGDLLAVHRSAEARAG-QVVVARIGDEVTVKRFQKR-GHT 162
Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
+ L+ N + V++ E
Sbjct: 163 VQLLPENADFEPIVVDLKRQE 183
>gi|71899794|ref|ZP_00681945.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
gi|71730489|gb|EAO32569.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
Length = 278
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM PL GDI+ ++++I GD + + K+L R + ++S+N +
Sbjct: 196 GPSMRPLIEDGDIVWIDTSIDYFNGDDYYLINYGDETQIKMLQRR-IDGLYVVSVNPEFK 254
Query: 204 VDTVEMSDI 212
E ++I
Sbjct: 255 EWRCEPNEI 263
>gi|23004335|ref|ZP_00047719.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Magnetospirillum magnetotacticum MS-1]
Length = 209
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + + SM GD+++++ N GD ++ + K L R G SI
Sbjct: 119 GEHYALEVRGDSMVEAGILDGDLVVIHKQDTANNGDIIVALIDDEEATLKRLRRR-GSSI 177
Query: 194 DLMSLNCCYPVDTVEMSDI 212
L + N Y + +
Sbjct: 178 ALEADNPAYETRVLGPDRV 196
>gi|322412342|gb|EFY03250.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 230
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 53 PST--ESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
P+T ES +KI L + E ++ + + + +EK IPL
Sbjct: 57 PTTYFESEYKIVNTYLQLSTENQGKVDEYADELLQKQQSQEKVIPLFAVE------VLSD 110
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAI 163
G + +YA + Q D + SM P+Y G++ ++ ++
Sbjct: 111 VSLSAGLGESLFD----EYETETVYAEEEQYGYDIAAWIKGDSMEPIYLDGEVALIRASG 166
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G + + K L ++SLN YP + D
Sbjct: 167 FDYDG-AVYALSWNDSVYIKKLYREENG-FRMVSLNDNYPDKWIPYED 212
>gi|221638398|ref|YP_002524660.1| LexA repressor [Rhodobacter sphaeroides KD131]
gi|221159179|gb|ACM00159.1| LexA repressor [Rhodobacter sphaeroides KD131]
Length = 222
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 16/136 (11%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAI 133
LP ++PL+ +G + +V VP + G YA+
Sbjct: 84 LPKGAVTVETAGALDLPLMGRIAAGL------PIEAINGGPQSVTVPGMMLSGRGQHYAL 137
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM+ GDI+++ + GD ++ + K RRG
Sbjct: 138 E-------VKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADHEATLKR-YRRRGGM 189
Query: 193 IDLMSLNCCYPVDTVE 208
I L N Y
Sbjct: 190 IALEPANDSYETQVYP 205
>gi|295697906|ref|YP_003602563.1| SOS mutagenesis and repair protein UmuD [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295060018|gb|ADF64755.1| SOS mutagenesis and repair protein UmuD [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295097799|emb|CBK86889.1| SOS response UmuD protein. Serine peptidase. MEROPS family S24
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 143
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++SA +
Sbjct: 27 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMSDGSLY-NGDLLVVDSAEKP 82
Query: 166 NCGDRLLIKPRTGDIVAK 183
GD +++ G+ K
Sbjct: 83 RHGD-IVVASVQGEFTVK 99
>gi|254719207|ref|ZP_05181018.1| LexA repressor [Brucella sp. 83/13]
gi|265984203|ref|ZP_06096938.1| LexA repressor [Brucella sp. 83/13]
gi|306837955|ref|ZP_07470813.1| LexA repressor [Brucella sp. NF 2653]
gi|264662795|gb|EEZ33056.1| LexA repressor [Brucella sp. 83/13]
gi|306406879|gb|EFM63100.1| LexA repressor [Brucella sp. NF 2653]
Length = 240
Score = 36.5 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P N + + G YA++ + SM+ GD +I+
Sbjct: 125 AAGVPISAIQNQTHMLSLPPEMIGAGEHYALE-------VKGDSMIDAGIFDGDTVIIKR 177
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
N G+ ++ + K + SI L + N Y +
Sbjct: 178 GDTANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 227
>gi|120612752|ref|YP_972430.1| putative phage repressor [Acidovorax citrulli AAC00-1]
gi|120591216|gb|ABM34656.1| putative phage repressor [Acidovorax citrulli AAC00-1]
Length = 248
Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
SM P R D +L+ + + G ++ K + G+ + + S N
Sbjct: 159 VVGNSMEPYLRSRDTTLLDRRANDVGAEGIHAIRLDGALMLKFVQRLPGKVLRVSSANQD 218
Query: 202 YPVDTV-----EMSDIEWIARILW 220
Y V D + R+ W
Sbjct: 219 YAPFEVTGNEEAERDFAVLGRVRW 242
>gi|146279124|ref|YP_001169283.1| LexA repressor [Rhodobacter sphaeroides ATCC 17025]
gi|166224643|sp|A4WX64|LEXA_RHOS5 RecName: Full=LexA repressor
gi|145557365|gb|ABP71978.1| SOS-response transcriptional repressor, LexA [Rhodobacter
sphaeroides ATCC 17025]
Length = 228
Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 16/135 (11%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQ 134
P ++PL+ +G + + +V VP + G YA++
Sbjct: 91 PRGARPVETANALDLPLMGRIAAGL------PIEAITDGAQSVTVPSMMLSGRGQHYALE 144
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM GDI+++ + GD ++ + K R G I
Sbjct: 145 -------VRGDSMIEAGINDGDIVVIREQQTADNGDIVVALVADHEATLKRFRRR-GGMI 196
Query: 194 DLMSLNCCYPVDTVE 208
L N Y
Sbjct: 197 ALEPANASYETQVYP 211
>gi|302189709|ref|ZP_07266382.1| prophage PSPPH03, Cro/CI family transcriptional regulator
[Pseudomonas syringae pv. syringae 642]
Length = 290
Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P + D L+++ ++ GD + + + K L + ++S N +
Sbjct: 207 GQSMAPTIKDRDPLLVDVTVREFTGDGIYLFSYDEMLYVKRLQKKGKDRFKMISDNKHHD 266
Query: 204 VDTVEMSDIEWIARI--LWASQ 223
+ + + D +AR+ +W Q
Sbjct: 267 PEDIWVDDTHILARVLYVWNGQ 288
>gi|254302132|ref|ZP_04969490.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322324|gb|EDK87574.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 219
Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSID 194
+ + SM P G+ +++ +++ + + K L + + + I
Sbjct: 123 KSFFVEITGNSMEPTLEDGEFALVDPENTTYSKNKIYVVTYNDEGYIKRLEMKDKLKVIT 182
Query: 195 LMSLNCCYPVDTVEMS 210
L S N Y +
Sbjct: 183 LKSDNPDYDDIDIPEE 198
>gi|256375571|ref|YP_003099231.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum
DSM 43827]
gi|255919874|gb|ACU35385.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum
DSM 43827]
Length = 235
Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 37/135 (27%), Gaps = 19/135 (14%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
++ + +P+L +G + + + +P ++
Sbjct: 98 AEIVTGLDPAAKPTPAYVPMLGRIAAGG------PILAEQSIEDVFPLPREIVGEGEVFL 151
Query: 133 IQTQDTRHKTQDTSML-PLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
+ K SM+ GD +++ ++ G+ K +
Sbjct: 152 L-------KVVGDSMVDAAITDGDWVVVRQQPTAD---NGEVVAAMIEGEATVKTFKRKD 201
Query: 190 GRSIDLMSLNCCYPV 204
+ L+ N Y
Sbjct: 202 DGHVWLLPQNPAYQP 216
>gi|254384685|ref|ZP_05000024.1| signal peptidase [Streptomyces sp. Mg1]
gi|194343569|gb|EDX24535.1| signal peptidase [Streptomyces sp. Mg1]
Length = 139
Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ SM+P GD L++ V GD ++++
Sbjct: 12 EVFEVTGPSMVPTLLHGDRLVVRHGKAVRPGDVVVLR 48
>gi|218674154|ref|ZP_03523823.1| glycosyl hydrolase (glycogen debranching) protein [Rhizobium etli
GR56]
Length = 215
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 33/170 (19%)
Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKW------------NT 117
+ LP + + + + G+ G++ P W
Sbjct: 42 EFARLPMARDGN---QVHRLFVDGLRQGARYGYRADGIYAPDNGLWFDPSKLLVDPYAKE 98
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTS------MLPLYRKGDIL---------ILNSA 162
+ P P GIY +QD K TS PL++ G + IL+
Sbjct: 99 IDRPFRYDPRLGIYGQDSQDLMPKAIVTSDTRAAVAKPLFKPGGFIYEVAVRPFTILHPD 158
Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
I R I V L +++LM + + D+
Sbjct: 159 IPERQ--RGTIAALAHPSVIAHLKRIGVDAVELMPITAWIDERHLPPLDL 206
>gi|73541696|ref|YP_296216.1| LexA repressor [Ralstonia eutropha JMP134]
gi|123732906|sp|Q46ZR1|LEXA_RALEJ RecName: Full=LexA repressor
gi|72119109|gb|AAZ61372.1| SOS-response transcriptional repressor, LexA [Ralstonia eutropha
JMP134]
Length = 218
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + + SM GD+L + A + G ++ + D+ K L R G +
Sbjct: 124 ERPDYLLRVRGLSMRDAGILDGDLLAVRKASEAPNGKIVVARLGD-DVTVKRLQRRDG-A 181
Query: 193 IDLMSLNCCYPV 204
I+L++ N +P
Sbjct: 182 IELIAENPDFPN 193
>gi|311067956|ref|YP_003972879.1| type I signal peptidase [Bacillus atrophaeus 1942]
gi|310868473|gb|ADP31948.1| type I signal peptidase [Bacillus atrophaeus 1942]
Length = 193
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIV-AKVLISRRGRS 192
+ + +SM P G+ L +N + ++ GD ++I + + K LI + G +
Sbjct: 43 EPYLVEGSSMYPTLHDGERLFVNKTVNYVGELKRGDIVIINGDSSKVHYVKRLIGKPGET 102
Query: 193 IDL 195
+++
Sbjct: 103 VEM 105
>gi|306841869|ref|ZP_07474549.1| LexA repressor [Brucella sp. BO2]
gi|306287999|gb|EFM59401.1| LexA repressor [Brucella sp. BO2]
Length = 240
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 106 SGVFPTGNKWNT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P N + +P YA++ + SM+ GD +I+
Sbjct: 125 AAGVPISAIQNQTHMLSLPPEMIGTGEHYALE-------VKGDSMIDAGIFDGDTVIIKR 177
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
N G+ ++ + K + SI L + N Y +
Sbjct: 178 GDTANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 227
>gi|241764024|ref|ZP_04762064.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
gi|241366698|gb|EER61163.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
Length = 148
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM G I+ ++ AI+ + +++ G+ K L +R
Sbjct: 55 PQATYFWRVRGDSMRDAGIEDGSIIAVDRAIKP-KHNSIVVAIVDGECTVKYLH-QRAGR 112
Query: 193 IDLMSLNCCYPV 204
I L + N YP
Sbjct: 113 IKLRAANPTYPD 124
>gi|330502554|ref|YP_004379423.1| LexA repressor [Pseudomonas mendocina NK-01]
gi|328916840|gb|AEB57671.1| LexA repressor [Pseudomonas mendocina NK-01]
Length = 204
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-------NGIYAIQT 135
T + I + F + + P G P + H N +
Sbjct: 59 TPGASRGIRIPGFEAGAAN---EDEGLPV-IGRVAAGAPILAQQHVEESCQINPAFFQPK 114
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D + + SM + GD+L +++ + G ++++ ++ K + +
Sbjct: 115 ADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNG-QIVVARIDDEVTVKRFKREGNK-VW 172
Query: 195 LMSLNCCYPVDTVEMS 210
L++ N + V++
Sbjct: 173 LIAENPEFAPIEVDLE 188
>gi|311896053|dbj|BAJ28461.1| putative serine/threonine protein phosphatase [Kitasatospora setae
KM-6054]
Length = 867
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 27/195 (13%)
Query: 11 EAIDRM--AERHNLTP---SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
A+D + A L +GL ++ D +F R WP TE +
Sbjct: 639 TALDALSRAAARGLDVAELTGLQQERAADARAF-----VEAYQRYCWP-TEGLD------ 686
Query: 66 NETICQLLDLP-FSDGRTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
+ L + + L+ + ++G P ++ + V +
Sbjct: 687 GIRLAPFQLLAAEGANLALRPHTEHLALIDRLVDADRRRAEEAGGAPVLHRTGRMAV-DT 745
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
+ A+ + M P++R G ++ ++V R ++ G
Sbjct: 746 EDEDSIAAAVAWWEELTAAGGEGMVVKPVEPIHRDGSGRLVQPGLKVRG--REYLRIIYG 803
Query: 179 DIVAKVLISRRGRSI 193
+ L R RS+
Sbjct: 804 PDYTRQLDRLRQRSL 818
>gi|306818499|ref|ZP_07452222.1| repressor LexA [Mobiluncus mulieris ATCC 35239]
gi|304648672|gb|EFM45974.1| repressor LexA [Mobiluncus mulieris ATCC 35239]
Length = 278
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 22/131 (16%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQ 134
G IPL+ + P + +T +P + + ++ ++
Sbjct: 147 PIGVADTADSNAIPLVGRIAA---------GIPITAEELVEDTFMLPRLFTGAGELFMLE 197
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM GD +++ + + GD ++ G+ K +G I
Sbjct: 198 -------VNGESMRDAAIMNGDWVVVRAQNEARNGD-IVAAMLEGEATVKEFSRDKG-HI 248
Query: 194 DLMSLNCCYPV 204
L+ N +
Sbjct: 249 WLLPHNPSFEP 259
>gi|39935968|ref|NP_948244.1| LexA repressor [Rhodopseudomonas palustris CGA009]
gi|39649822|emb|CAE28344.1| SOS response transcriptional repressor, lexA [Rhodopseudomonas
palustris CGA009]
Length = 275
Score = 36.5 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM GD+ ++ + GD ++
Sbjct: 174 TISVPADMLGSGEHYALE-------VRGDSMVEAGILDGDMALIQKNDVADTGDIVVALI 226
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 227 DEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRV 262
>gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC
13813]
Length = 230
Score = 36.5 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 53 PST--ESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
P+T ES +KI L + E ++ + + + +EK IPL
Sbjct: 57 PTTYFESEYKIVNTYLQLSTENQGKVDEYADELLQKQQSQEKVIPLFAVE------VLSD 110
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAI 163
G + +YA + Q D + SM P+Y G++ ++ ++
Sbjct: 111 VSLSAGLGESLFD----EYETETVYAEEEQYGYDIAAWIKGDSMEPIYLDGEVALIRASG 166
Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
G + + K L ++SLN YP + D
Sbjct: 167 FDYDG-AVYALSWNDSVYIKKLYREENG-FKMVSLNDNYPDKWIPYED 212
>gi|120602458|ref|YP_966858.1| phage repressor [Desulfovibrio vulgaris DP4]
gi|120562687|gb|ABM28431.1| putative phage repressor [Desulfovibrio vulgaris DP4]
gi|311233917|gb|ADP86771.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
Length = 216
Score = 36.5 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM P R GD L+++ + + I+ K +I L+S N
Sbjct: 128 MNVTGDSMEPGIRHGDTLLIDQSHVTAQTGGVYAFGYEDSILVKRFGR-DADAILLLSDN 186
Query: 200 CCYPVDTVEMSDIEWIA---RILW 220
Y + + + + +I+W
Sbjct: 187 TAYAPIRIRGDEADLLHVIGKIVW 210
>gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB]
gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB]
Length = 210
Score = 36.5 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
A+ Q + ++ +M+P + D++I++ + GD +L + + + R
Sbjct: 112 ALSQQSFAFRVEEQAMMPAIVRDDVVIIDPQVSPQPGDSVLA-LQQQIALIRTWRQRSSE 170
Query: 192 ----SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
+L +N +P +++ I ++
Sbjct: 171 GGVTQFELAPININFPELHSSRENLKLIGTVV 202
>gi|262369085|ref|ZP_06062414.1| merops peptidase family S24 [Acinetobacter johnsonii SH046]
gi|262316763|gb|EEY97801.1| merops peptidase family S24 [Acinetobacter johnsonii SH046]
Length = 230
Score = 36.5 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVA---KVLISRR 189
K SM P + D + +N +Q + GD ++I G+ A K++I
Sbjct: 137 SGYGLKVTGMSMSPYFLPDDRIYVNPEVQTFDLQTGDLVII-ACYGETEATFKKLIIEGD 195
Query: 190 GRSIDLMSLNCCYPVDTVEMSD 211
+ L LN +P +++S+
Sbjct: 196 NKY--LQPLNPNWPEQIIKLSE 215
>gi|218667986|ref|YP_002426169.1| umuD protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218520199|gb|ACK80785.1| umuD protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 164
Score = 36.5 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 106 SGVFPT---GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ FP+ G + + H + SM + GD ++++
Sbjct: 48 AAGFPSPADGYVEQQIDLNTHLIQHREA------TFILRVSGWSMRDVGIFDGDEILVDR 101
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
AI G ++++ GD+ K L R G ++ L++ N +P ++ +
Sbjct: 102 AITPVDG-KIVVAAINGDLTVKRL-RRIGSAVHLVAENPEFPTIILKEGE 149
>gi|154685848|ref|YP_001421009.1| SipT [Bacillus amyloliquefaciens FZB42]
gi|308173406|ref|YP_003920111.1| type I signal peptidase [Bacillus amyloliquefaciens DSM 7]
gi|729935|sp|P41025|LEP2_BACAM RecName: Full=Signal peptidase I; Short=SPase I; AltName:
Full=Leader peptidase I
gi|562274|emb|CAA83921.1| signal peptidase I [Bacillus amyloliquefaciens]
gi|154351699|gb|ABS73778.1| SipT [Bacillus amyloliquefaciens FZB42]
gi|307606270|emb|CBI42641.1| type I signal peptidase [Bacillus amyloliquefaciens DSM 7]
gi|328553664|gb|AEB24156.1| type I signal peptidase [Bacillus amyloliquefaciens TA208]
gi|328911490|gb|AEB63086.1| Signal peptidase I [Bacillus amyloliquefaciens LL3]
Length = 193
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIV-AKVLISRRGRS 192
+ + +SM P G+ L +N ++ ++ GD ++I T + K LI + G +
Sbjct: 43 EPYLVEGSSMYPTLHDGERLFVNKSVNYIGEIERGDIVIINGDTSKVHYVKRLIGKPGET 102
Query: 193 IDL 195
+++
Sbjct: 103 VEM 105
>gi|330811959|ref|YP_004356421.1| regulatory protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380067|gb|AEA71417.1| putative regulatory protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 209
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTR---HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
+ IR P + + +++ + SM G L ++ + ++
Sbjct: 84 EIPDQSIRLPRSHLESLEINPSDAICITMVGDSMAERIADGSTLAIDRGLTQIVDGQIYA 143
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEW--IARILWA 221
G + K L G + L S N YP + I+ I I W
Sbjct: 144 LEHDGMLRIKYLHRIPGNRLRLRSHNSTAYPDEVFSAEQIDAQHIHVIGWV 194
>gi|256828866|ref|YP_003157594.1| putative phage repressor [Desulfomicrobium baculatum DSM 4028]
gi|256578042|gb|ACU89178.1| putative phage repressor [Desulfomicrobium baculatum DSM 4028]
Length = 209
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ + SM P GD ILI S QV + ++ +I K + R G
Sbjct: 115 PGRMVAMEVIGDSMSPELEPGDNILIDQSQNQVADNNLYVVGLAD-NIQVKRVQIRPGLV 173
Query: 193 IDLMSLNCCYPVDTVEMSDIEW---IARILWAS 222
+ L S N Y T++ +I+ I R+LW+S
Sbjct: 174 V-LFSTNQRYSPVTLQGDEIDTLRVIGRVLWSS 205
>gi|254521991|ref|ZP_05134046.1| phage-related repressor protein [Stenotrophomonas sp. SKA14]
gi|219719582|gb|EED38107.1| phage-related repressor protein [Stenotrophomonas sp. SKA14]
Length = 297
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
SM P GD++ +++A GD + G+ K+L R + ++S+N +P
Sbjct: 215 GPSMRPKIEDGDVVWIDTACDYFDGDDYYLINIEGETSIKMLQRRS-DGVYVVSVNPEFP 273
>gi|323699001|ref|ZP_08110913.1| putative phage repressor [Desulfovibrio sp. ND132]
gi|323458933|gb|EGB14798.1| putative phage repressor [Desulfovibrio desulfuricans ND132]
Length = 220
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ SM P ++GD +LI S V G + ++ K + G +
Sbjct: 126 PANMVLMEVIGNSMEPEIKEGDMVLIDQSRTDVLSGGIYAVGVED-TVMVKRVERLPG-T 183
Query: 193 IDLMSLNCCYPVDTV---EMSDIEWIARILWAS 222
+ L S N Y + E+ ++ I ++LWAS
Sbjct: 184 LVLRSDNVDYSPVHLSGDELDNVRVIGQVLWAS 216
>gi|76798009|ref|ZP_00780267.1| phage repressor protein [Streptococcus agalactiae 18RS21]
gi|76586632|gb|EAO63132.1| phage repressor protein [Streptococcus agalactiae 18RS21]
gi|323127145|gb|ADX24442.1| repressor protein, putative [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 230
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
P ++ + S D SM P+Y+ G++ ++ S G
Sbjct: 117 PGEGLYDEFETETVYSEDEYT----GFDIATWISGNSMEPVYKDGEVALIRSTGFDYDG- 171
Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G + K L ++S+N + D
Sbjct: 172 AVYALNWNGSLYIKKLYRE-EDGFRMVSINPDVAERFIPFED 212
>gi|119953755|ref|YP_950560.1| putative repressor [Streptococcus phage SMP]
gi|118430567|gb|ABK91891.1| putative repressor [Streptococcus phage SMP]
Length = 240
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
DT K SM P+ + D+L +N QV D + + G K L L
Sbjct: 153 DTIAKVAGDSMEPMIKDNDLLFINVTSQVGIND-IGVFQINGKNFVKKLKRDYDGRWYLQ 211
Query: 197 SLNCCYPV 204
SLN Y
Sbjct: 212 SLNNSYEE 219
>gi|254362146|ref|ZP_04978263.1| possible bacteriophage transcriptional regulator [Mannheimia
haemolytica PHL213]
gi|153093712|gb|EDN74659.1| possible bacteriophage transcriptional regulator [Mannheimia
haemolytica PHL213]
Length = 243
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 127 HNGIYAIQTQDTRHKT-----QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
Y++ SM P + GD+L ++ ++ GD + + G +
Sbjct: 133 PEQFYSLFRNMAPRYIRIINLSGDSMYPTFSSGDMLFVDISVNEFTGDGVYVFTYKGHLY 192
Query: 182 AKVLISRRGRSIDLMSLNCCYP 203
K L G I ++S N Y
Sbjct: 193 VKRLQ-NTGDQILVISDNKLYE 213
>gi|307700848|ref|ZP_07637873.1| repressor LexA [Mobiluncus mulieris FB024-16]
gi|307613843|gb|EFN93087.1| repressor LexA [Mobiluncus mulieris FB024-16]
Length = 251
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 22/131 (16%)
Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQ 134
G IPL+ + P + +T +P + + ++ ++
Sbjct: 120 PIGVADTADSNAIPLVGRIAA---------GIPITAEELVEDTFMLPRLFTGAGELFMLE 170
Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
SM GD +++ + + GD ++ G+ K +G I
Sbjct: 171 -------VNGESMRDAAIMNGDWVVVRAQNEARNGD-IVAAMLEGEATVKEFSRDKG-HI 221
Query: 194 DLMSLNCCYPV 204
L+ N +
Sbjct: 222 WLLPHNPSFEP 232
>gi|307330907|ref|ZP_07610040.1| putative phage repressor [Streptomyces violaceusniger Tu 4113]
gi|306883448|gb|EFN14501.1| putative phage repressor [Streptomyces violaceusniger Tu 4113]
Length = 164
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ + SM P GD L++ V GD ++++
Sbjct: 26 EVYNPSMQPTLYPGDQLVVRYGAPVRPGDVVVVR 59
>gi|240016860|ref|ZP_04723400.1| transcriptional regulator [Neisseria gonorrhoeae FA6140]
gi|240113645|ref|ZP_04728135.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|240116383|ref|ZP_04730445.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|240117610|ref|ZP_04731672.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|240123164|ref|ZP_04736120.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|260439787|ref|ZP_05793603.1| putative phage repressor protein [Neisseria gonorrhoeae DGI2]
gi|268599708|ref|ZP_06133875.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|268602050|ref|ZP_06136217.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|268603316|ref|ZP_06137483.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|268681792|ref|ZP_06148654.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|291043050|ref|ZP_06568780.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
gi|268583839|gb|EEZ48515.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|268586181|gb|EEZ50857.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|268587447|gb|EEZ52123.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|268622076|gb|EEZ54476.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|291013025|gb|EFE05001.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
Length = 238
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 141 KTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM + I + + G ++ + G K LI + G S+ + S N
Sbjct: 153 TLTGDSMEEKIAEDAAIAVDTGETAIRDG-KIYAFAQDGMFRVKYLIRQPGNSVLIRSHN 211
Query: 200 CC-YPVDTVEMSDIEWIARILWAS 222
YP +T + + I R+ W S
Sbjct: 212 SGFYPDETAPLDSLSVIGRVFWWS 235
>gi|239906085|ref|YP_002952824.1| hypothetical protein DMR_14470 [Desulfovibrio magneticus RS-1]
gi|239795949|dbj|BAH74938.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 269
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 140 HKTQDTSMLPLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
SM P+ D +++ + ++ G L ++ K L G+ + L S
Sbjct: 178 MDVAGDSMEPILLDRDTVLIDESQNAIISGG--LFAVGVEQEVFVKYLDRIPGKLV-LRS 234
Query: 198 LNCCYPVDTVEM-----SDIEWIARILWA 221
N Y V+M + + I R++W+
Sbjct: 235 KNSDYQPIEVDMNGDLAASVRIIGRVVWS 263
>gi|70730989|ref|YP_260730.1| beta-lactamase [Pseudomonas fluorescens Pf-5]
gi|68345288|gb|AAY92894.1| beta-lactamase, putative [Pseudomonas fluorescens Pf-5]
Length = 539
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 16/92 (17%)
Query: 69 ICQLLDLPFSDG----RTTEKKEKEIPLLYFPPSGSGGFFDSGV-----FPTGNKWNTVG 119
+ LL P G + +P +G + D G +G W+
Sbjct: 349 LDTLLGSPAPSGEADIPPPPPSIRALPKASLKTLVAGTYLDDGGHQLQLRRSGKGWSLET 408
Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
P+ + + Q D P+Y
Sbjct: 409 FPD-------VLPLTRQSDEVLVADNDGTPIY 433
>gi|104782730|ref|YP_609228.1| LexA repressor [Pseudomonas entomophila L48]
gi|95111717|emb|CAK16441.1| transcriptional repressor for SOS response (signal peptidase of
LexA family) [Pseudomonas entomophila L48]
Length = 202
Score = 36.5 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 18/158 (11%)
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
A E + L + + IP G + P G P +
Sbjct: 42 AAEEHLKALARKGAIEMTPGASRGIRIP-------GVEAKVEDNGLPI-IGRVAAGAPIL 93
Query: 124 RSPH-------NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
H N + D + SM + GD+L +++ + G ++++
Sbjct: 94 AEQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNG-QVVVAR 152
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
++ K + + L++ N + V++ + E
Sbjct: 153 IGDEVTVKRFKREGSK-VWLIAENPEFAPIEVDLKEQE 189
>gi|326332875|ref|ZP_08199132.1| putative signal peptidase protein [Nocardioidaceae bacterium
Broad-1]
gi|325949233|gb|EGD41316.1| putative signal peptidase protein [Nocardioidaceae bacterium
Broad-1]
Length = 124
Score = 36.5 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK-V 184
A + K SM P R GD L + G ++ + G +V K
Sbjct: 2 EDIAARAPRHTWGMAKVVGVSMEPTLRAGDRLWVAYGRTPVPGRVVVARLADGAVVVKRA 61
Query: 185 LISRRGRSID----LMSLNCCYP 203
+ R S L+S N P
Sbjct: 62 VERRTTASGRSGWWLLSDNPAAP 84
>gi|256369570|ref|YP_003107080.1| LexA repressor [Brucella microti CCM 4915]
gi|255999732|gb|ACU48131.1| LexA repressor [Brucella microti CCM 4915]
Length = 240
Score = 36.5 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P N + + G YA++ + SM+ GD +I+
Sbjct: 125 AAGVPISAIQNQTHMLSLPPEMIGAGEHYALE-------VKGDSMIDAGIFDGDTVIIKR 177
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
N G+ ++ + K + SI L + N Y +
Sbjct: 178 GDTANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 227
>gi|237728267|ref|ZP_04558748.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909745|gb|EEH95663.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 148
Score = 36.5 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 7 KKIWEAIDRMAERH-----NLTPSGLARKAGLDPTSFNKS--KRFGIEGRNR 51
KI +D +H N+TPS L + +G+ T+FN+S RF + R
Sbjct: 33 DKINHGLDGTVAKHISEWANITPSELRKMSGIPNTTFNRSIKDRFTADQSER 84
>gi|59801483|ref|YP_208195.1| putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae FA 1090]
gi|59718378|gb|AAW89783.1| putative phage repressor protein, putative phage associated protein
[Neisseria gonorrhoeae FA 1090]
Length = 215
Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 141 KTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM + I + + G ++ + G K LI + G S+ + S N
Sbjct: 130 TLTGDSMEEKIAEDAAIAVDTGETAIRDG-KIYAFAQDGMFRVKYLIRQPGNSVLIRSHN 188
Query: 200 CC-YPVDTVEMSDIEWIARILWAS 222
YP +T + + I R+ W S
Sbjct: 189 SGFYPDETAPLDSLTVIGRVFWWS 212
>gi|256371413|ref|YP_003109237.1| phage repressor [Acidimicrobium ferrooxidans DSM 10331]
gi|256007997|gb|ACU53564.1| putative phage repressor [Acidimicrobium ferrooxidans DSM 10331]
Length = 134
Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
R SM P GD L++ G +++ G +A + R + +
Sbjct: 19 RVVVDGLSMRPALEPGDRLVVGPGRA-RVGRIVVVDLGGGRPLA--VKRVAARVRGAVWV 75
Query: 199 NCCYPVDTVEMSDIEWIAR-----ILW 220
+ + + WIAR ++W
Sbjct: 76 VGDDLAHSTDSRSLGWIARGRIHGVVW 102
>gi|46580084|ref|YP_010892.1| transcriptional regulator [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449500|gb|AAS96151.1| transcriptional regulator, putative [Desulfovibrio vulgaris str.
Hildenborough]
Length = 204
Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
SM P R GD L+++ + + I+ K +I L+S N
Sbjct: 116 MNVTGDSMEPGIRHGDTLLIDQSHVTAQTGGVYAFGYEDSILVKRFGR-DADAILLLSDN 174
Query: 200 CCYPVDTVEMSDIEWIA---RILW 220
Y + + + + +I+W
Sbjct: 175 TAYAPIRIRGDEADLLHVIGKIVW 198
>gi|212703359|ref|ZP_03311487.1| hypothetical protein DESPIG_01402 [Desulfovibrio piger ATCC 29098]
gi|212673205|gb|EEB33688.1| hypothetical protein DESPIG_01402 [Desulfovibrio piger ATCC 29098]
Length = 226
Score = 36.1 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM P D+++++ + + R+ + KV+ + GR I
Sbjct: 130 PSHMALLRVSGDSMEPRICHNDVVLVDQSQKDPVPGRIYAVSVEDLVYLKVVNAMPGRLI 189
Query: 194 DLMSLNCCYPVDTVEMSD-----IEWIARILWA 221
L S N YP +D + + R +W
Sbjct: 190 -LSSYNPAYPPIEACTTDQLADLVRIVGRAVWV 221
>gi|113868257|ref|YP_726746.1| LexA repressor [Ralstonia eutropha H16]
gi|123133872|sp|Q0K9E3|LEXA_RALEH RecName: Full=LexA repressor
gi|113527033|emb|CAJ93378.1| SOS-response transcriptional repressor LexA [Ralstonia eutropha
H16]
Length = 217
Score = 36.1 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + + SM GD+L + A + G ++ + D+ K L R G
Sbjct: 124 ERPDYLLRVRGLSMRDAGILDGDLLAVRRASEAANGKIVVARLGD-DVTVKRLQRR-GGH 181
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I+L++ N + VE +
Sbjct: 182 IELIAENPDFTNIIVEPGE 200
>gi|307321404|ref|ZP_07600802.1| putative phage repressor [Sinorhizobium meliloti AK83]
gi|306892949|gb|EFN23737.1| putative phage repressor [Sinorhizobium meliloti AK83]
Length = 257
Score = 36.1 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 41/250 (16%), Positives = 80/250 (32%), Gaps = 61/250 (24%)
Query: 18 ERHNLTPSGLARKAGLDPTSFNK-SKRFGIEGRNRWPSTESIFKILAAT----------- 65
E+ +T AR AGL+ + F K +R G R + + I K L +
Sbjct: 14 EQKGMTYESAARAAGLERSYFRKLFERGGAS--PRGETLQKIAKGLDVSITTLLSTTNKR 71
Query: 66 ------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-------------S 100
E + QL+ + +E + IP S
Sbjct: 72 PVVSSYDPDTPSGEDLEQLMTI------GSETGVRGIPTDASAQIDITGGMGGGGLSIVS 125
Query: 101 GGFFDSGV--FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
G F + + +P G+ A Q SM P +GD++
Sbjct: 126 EGVPGRHGMTFAAEHVRDYWRLPPPILSALGLSA--HDVAVFPVQGDSMQPTLDEGDVVF 183
Query: 159 LN-----SAIQVNCGDRLLIKPRTGDIVAKVLISRRG----RSIDLMSLNCCYPVDTVEM 209
++ + G ++ G +V ++ +S +++ ++S N +
Sbjct: 184 IDTRHRWPSPP---GLYAVLDEIGGVVVKRIEVSSPPGAEMQTVSVISDNPRHAKKEWPA 240
Query: 210 SDIEWIARIL 219
++ + R+L
Sbjct: 241 EELFIVGRVL 250
>gi|189220309|ref|YP_001940949.1| SOS-response transcriptional repressor LexA/UmuD (HTH,
RecA-mediated autopeptidase) [Methylacidiphilum
infernorum V4]
gi|189187167|gb|ACD84352.1| SOS-response transcriptional repressor LexA/UmuD (HTH,
RecA-mediated autopeptidase) [Methylacidiphilum
infernorum V4]
Length = 188
Score = 36.1 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 119 GVPEIRSPH--------NGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGD 169
G P H + K SM R GDIL+++ A + G
Sbjct: 69 GFPNPADDHLEKSLSLDELLIKRPAATFFVKASGNSMEGEGIRDGDILVVDRAEKPKNGS 128
Query: 170 RLLIKPRTGDIVAKVL 185
+++ G++V K L
Sbjct: 129 -IVVAAINGELVVKKL 143
>gi|306844008|ref|ZP_07476603.1| LexA repressor [Brucella sp. BO1]
gi|306275763|gb|EFM57487.1| LexA repressor [Brucella sp. BO1]
Length = 240
Score = 36.1 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
+ P N + + G YA++ + SM+ GD +I+
Sbjct: 125 AAGVPISAIQNQTHMLSLPPEMIGAGEHYALE-------VKGDSMIDAGIFDGDTVIIKR 177
Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
N G+ ++ + K + SI L + N Y +
Sbjct: 178 GDTANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRV 227
>gi|21223622|ref|NP_629401.1| signal peptidase protein [Streptomyces coelicolor A3(2)]
gi|289769158|ref|ZP_06528536.1| signal peptidase [Streptomyces lividans TK24]
gi|9968705|emb|CAC05964.1| signal peptidase protein [Streptomyces coelicolor A3(2)]
gi|289699357|gb|EFD66786.1| signal peptidase [Streptomyces lividans TK24]
Length = 146
Score = 36.1 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ SM+P GD+L+++ +V GD ++++
Sbjct: 23 EVTGPSMVPTLHHGDVLLVHWGARVRPGDVVVLR 56
>gi|146344048|ref|YP_001201904.1| putative UV resistance protein [Pseudomonas fluorescens SBW25]
gi|146187860|emb|CAM96189.1| putative UV resistance protein [Pseudomonas fluorescens SBW25]
Length = 143
Score = 36.1 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
G F SG FP+ + P + A + + SMLP G LI++
Sbjct: 23 GRF-SGGFPSPAA-DHYEPPISLDELVDLRA--PHVWLGEAEGVSMLPCGIVSGSRLIID 78
Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
A GD ++ +V ++ S+ G + L S N YP
Sbjct: 79 RARTPKIGDVVVAYICNQPVVKRLDKSQNGSWV-LSSDNPEYPP 121
>gi|83719273|ref|YP_443002.1| LexA repressor [Burkholderia thailandensis E264]
gi|83653098|gb|ABC37161.1| LexA repressor [Burkholderia thailandensis E264]
Length = 235
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD+L + + G ++ + D+ K L R G ++L++ N Y V+
Sbjct: 161 DGDLLAVQKRAEAKDGQIIVARLGD-DVTVKRLKRRPGG-VELIAENPDYENIFVKAGSA 218
Query: 213 E 213
E
Sbjct: 219 E 219
>gi|188995809|ref|YP_001930061.1| probable signal peptidase-related protein [Porphyromonas gingivalis
ATCC 33277]
gi|188595489|dbj|BAG34464.1| probable signal peptidase-related protein [Porphyromonas gingivalis
ATCC 33277]
Length = 208
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGD 179
T ++ + +MLP YR G +L +N + GD L+IK + G+
Sbjct: 33 TTYRVRSDAMLPTYRSGKLLWINRIASPDRGDVLVIKYRQDGE 75
>gi|170721606|ref|YP_001749294.1| LexA repressor [Pseudomonas putida W619]
gi|169759609|gb|ACA72925.1| transcriptional repressor, LexA family [Pseudomonas putida W619]
Length = 205
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ E+P+L +G+ P G +G+ E ++ +T D
Sbjct: 72 AAPLRRPEILEVPVLGQVAAGA---------PIGP---DLGIHEQLLIDPSLFR-RTPDY 118
Query: 139 RHKTQDTSMLP--LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
K + SM+ ++ GD++ + + G ++ + G++ K L + G L+
Sbjct: 119 LLKVRGDSMINDGIF-DGDLVGIRQQGEARDGQIVVARL-DGEVTIKRLQRQPGG-YRLL 175
Query: 197 SLNCCYPV 204
N Y
Sbjct: 176 PRNPAYAP 183
>gi|126669228|ref|ZP_01740140.1| probable transcriptional regulator [Marinobacter sp. ELB17]
gi|126626309|gb|EAZ96991.1| probable transcriptional regulator [Marinobacter sp. ELB17]
Length = 237
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
I SM P+ G +++++ + G + K L +
Sbjct: 136 ADVIPESAVCTSVWGNSMAPVLPDGARVVVDTDDVSVKDGEIYAVNHDGMLRVKYLRRKP 195
Query: 190 GRSIDLMSLNCC------YPVDTVEMSDIEWIARILWAS 222
G ++++S N Y + V +IE I R+ W S
Sbjct: 196 GGGLEIISQNSAEYAAETYSAEQVASGNIEVIGRVFWWS 234
>gi|331680936|ref|ZP_08381576.1| protein ImpA [Escherichia coli H299]
gi|331081924|gb|EGI53082.1| protein ImpA [Escherichia coli H299]
Length = 145
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + ++ + + SM + GD+L+++ +
Sbjct: 28 AGFPS-PATDYAE--QELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRGEKP 84
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD ++I G+ K L+ R +++ +S + + T+ +I
Sbjct: 85 QHGD-IVIAEIDGEFTVKRLLLRPRPALEPVSDSPEF--RTLYPENI 128
>gi|17546023|ref|NP_519425.1| LexA repressor [Ralstonia solanacearum GMI1000]
gi|25453094|sp|Q8XZU1|LEXA_RALSO RecName: Full=LexA repressor
gi|17428318|emb|CAD15006.1| probable lexa repressor . transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 216
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + A + G ++ + D+ K + GR ++L++ N + V++
Sbjct: 142 DGDLLAVQRAAEAANGKIVVARLGD-DVTVKRFQRK-GRQVELIAENPDFEPIHVDLDR 198
>gi|15808003|ref|NP_285667.1| lexA repressor [Deinococcus radiodurans R1]
gi|6460733|gb|AAF12438.1|AE001863_63 lexA repressor [Deinococcus radiodurans R1]
Length = 220
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVL 185
+ ++ D + + SM + GD +++ A +V+ G+ +++ P K L
Sbjct: 112 EALLGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAATLKRL 171
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G+ I L S N P + ++ R++
Sbjct: 172 -YHFGQDILLTSENPAMPRLSFPAEQVQVQGRMV 204
>gi|194289925|ref|YP_002005832.1| lexa repressor [Cupriavidus taiwanensis LMG 19424]
gi|229621212|sp|B3R2P9|LEXA_CUPTR RecName: Full=LexA repressor
gi|193223760|emb|CAQ69767.1| transcriptional LExA repressor [Cupriavidus taiwanensis LMG 19424]
Length = 217
Score = 36.1 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
+ D + + SM GD+L + A + G ++ + D+ K L R G
Sbjct: 124 ERPDYLLRVRGLSMRDAGILDGDLLAVRRASEAANGKIVVARLGD-DVTVKRLQRR-GGH 181
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I+L++ N + VE +
Sbjct: 182 IELIAENPDFTNIIVEPGE 200
>gi|114765690|ref|ZP_01444788.1| FAD dependent oxidoreductase [Pelagibaca bermudensis HTCC2601]
gi|114541907|gb|EAU44942.1| FAD dependent oxidoreductase [Roseovarius sp. HTCC2601]
Length = 304
Score = 36.1 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
R GD +I+ SA DR+++ ++L + ++S P V SD
Sbjct: 228 RDGDGVIVTSARGEERFDRVVMATHA-PQSFEMLDRPDPQERAILSAFRTEPNRMVLHSD 286
Query: 212 IEWIARI--LWAS 222
+ R +W+S
Sbjct: 287 TRLMPRTRKIWSS 299
>gi|300309564|ref|YP_003773656.1| peptidase S24 LexA-like protein [Herbaspirillum seropedicae SmR1]
gi|300072349|gb|ADJ61748.1| peptidase S24 LexA-like protein [Herbaspirillum seropedicae SmR1]
Length = 268
Score = 36.1 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+Q +M P +GD+L+L++ + D L G +V + L R I
Sbjct: 174 PSQLALIDMNGDAMAPTVAQGDLLLLDTRSAQSWRDGLYAIAVNGMLVVRRLCQRLSGQI 233
Query: 194 DLMSLNCCYPVDTVEMSDIE---WIARILW 220
++ + N Y V+T++ + + R++W
Sbjct: 234 EIGADNPFYGVETLDAQQVARLDIVGRVVW 263
>gi|294506181|ref|YP_003570239.1| peptidoglycan N-acetylmuramoylhydrolase [Salinibacter ruber M8]
gi|294342509|emb|CBH23287.1| peptidoglycan N-acetylmuramoylhydrolase [Salinibacter ruber M8]
Length = 588
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 24/163 (14%)
Query: 54 STESIFKILAATNETICQL-LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
S ++ ++ T I L +L + E+ IPL +P
Sbjct: 374 SLRTVARLADTTRSAIESLNPELRRGRVPPSKERYYVRIPLGSYPRFA------------ 421
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ---DTSMLPLYRKGDILILNSAIQVNCG 168
WN +P+ + YA++ DT + TS L R I S + G
Sbjct: 422 ---WNYAELPDEKKQPATTYAVRRGDTLSEIAVRFGTSTATLKRLNGI----SGAIIRPG 474
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
DRL++ + RR + + P+D +E +
Sbjct: 475 DRLVVPVQEYASALSAADQRRPLRVQYDTSPPTRPLDAIETAR 517
>gi|299067356|emb|CBJ38555.1| transcriptional lexA repressor [Ralstonia solanacearum CMR15]
Length = 216
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
GD+L + A + G ++ + D+ K + GR ++L++ N + V++
Sbjct: 142 DGDLLAVQRAAEAANGKIVVARLGD-DVTVKRFQRK-GRQVELLAENPDFEPIHVDLDR 198
>gi|6685589|sp|O32506|LEXA_DEIRA RecName: Full=LexA repressor
gi|2257478|dbj|BAA21376.1| orf144d [Deinococcus radiodurans]
Length = 210
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVL 185
+ ++ D + + SM + GD +++ A +V+ G+ +++ P K L
Sbjct: 102 EALLGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAATLKRL 161
Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
G+ I L S N P + ++ R++
Sbjct: 162 -YHFGQDILLTSENPAMPRLSFPAEQVQVQGRMV 194
>gi|317484230|ref|ZP_07943159.1| bacteriophage CI repressor helix-turn-helix domain-containing
protein [Bilophila wadsworthia 3_1_6]
gi|316924579|gb|EFV45736.1| bacteriophage CI repressor helix-turn-helix domain-containing
protein [Bilophila wadsworthia 3_1_6]
Length = 215
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 34/162 (20%)
Query: 75 LPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
L DGR E + PL + P S D P+G T+ +PE +
Sbjct: 73 LRTEDGRYMEPEPAATPLGRGVSLPYYDSDRVQDGVWEPSG----TIMLPEPYAGKEL-- 126
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA------KVL 185
+ S P R+G + + D ++P +G I A V+
Sbjct: 127 ------RILRITGDSFSPTVRQGAFVGV---------DTSCVRPSSGSIFAVSVPFEGVV 171
Query: 186 ISRR---GRSIDLMSLNCCYPVDTVEMSD-IEWIARILWASQ 223
I R ++ L + N +P ++ +++ I R+ W Q
Sbjct: 172 IKRVFCDSDTLLLRTDNPLHPSMSIPLAEAGRLIGRVAWVFQ 213
>gi|289642424|ref|ZP_06474570.1| SOS-response transcriptional repressor, LexA [Frankia symbiont of
Datisca glomerata]
gi|289507769|gb|EFD28722.1| SOS-response transcriptional repressor, LexA [Frankia symbiont of
Datisca glomerata]
Length = 249
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 18/146 (12%)
Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
L + +P+L +G + +P ++ +
Sbjct: 115 LTAGSSTDGPAQAAYVPVLGRIAAGG------PILAEQAVEEVFPLPREIVGEGTLFTL- 167
Query: 135 TQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM+ GD +++ V ++ G+ K L R G +
Sbjct: 168 ------RVVGDSMVNAAICDGDWVVVR-QQPVADNGEIVAAMIDGEATVKTLRRRDG-HV 219
Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
L N Y + + RI+
Sbjct: 220 WLEPQNPAYAD--IPGDSATILGRIV 243
>gi|269838130|ref|YP_003320358.1| peptidase S26B, signal peptidase [Sphaerobacter thermophilus DSM
20745]
gi|269787393|gb|ACZ39536.1| peptidase S26B, signal peptidase [Sphaerobacter thermophilus DSM
20745]
Length = 356
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVL---ISRRGRSIDL 195
Q SM P + GD++I+ + GD + + D++ +++ G
Sbjct: 253 LVQGISMEPGFHTGDVVIVRPVDPEDLKVGDIIQFRDGNHDVLHRIIEIRQEEGGLVFIT 312
Query: 196 MSLNCCYPVDTVEMSDI 212
N P V +
Sbjct: 313 QGDNNDAPDPRVPAEHV 329
>gi|99082024|ref|YP_614178.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
gi|99038304|gb|ABF64916.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
Length = 289
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
++R L+ S LAR G+D ++ S+ +G R P+ I A + L
Sbjct: 18 LERALRDSGLSQSALARATGVDRSTI--SQLLTDDG-ARLPNAHVIGACAEALGVSADWL 74
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPS 98
L L E I + P +
Sbjct: 75 LSLSERPESAAELLASSIAMTEAPRA 100
>gi|111225146|ref|YP_715940.1| ribonuclease HII [Frankia alni ACN14a]
gi|123043979|sp|Q0RDP7|RNH2_FRAAA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|111152678|emb|CAJ64419.1| Endoribonuclease H. RNase H (RnhB) [Frankia alni ACN14a]
Length = 241
Score = 36.1 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 5/126 (3%)
Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
+ + G FD + W+ V +P G++
Sbjct: 47 AAVVLGPDGRRRLSPRLADSKLLTEQVREGLFDEVLR-AAADWSAVVIPAAEIDRTGVHV 105
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLIKPRTGDIVAKVLISR 188
R P Y D + ++ V GDR+ IVAKV R
Sbjct: 106 ANITGMRRAVARLGHRPGYVLTDGFAVAGFGTESLAVVKGDRVAACIAAASIVAKVTRDR 165
Query: 189 RGRSID 194
R++
Sbjct: 166 IMRALH 171
>gi|257055568|ref|YP_003133400.1| glucose/maltose/N-acetylglucosamine-specific phosphotransferase
system IIC component [Saccharomonospora viridis DSM
43017]
gi|256585440|gb|ACU96573.1| glucose/maltose/N-acetylglucosamine-specific phosphotransferase
system IIC component [Saccharomonospora viridis DSM
43017]
Length = 422
Score = 36.1 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
RW +TE + K+LAA + L L F+ G + F G G
Sbjct: 49 RWQATEDVAKVLAAAGGGLFDWLPLLFAVGIA----------VGFARKGDG 89
>gi|134295270|ref|YP_001119005.1| putative phage repressor [Burkholderia vietnamiensis G4]
gi|134138427|gb|ABO54170.1| putative phage repressor [Burkholderia vietnamiensis G4]
Length = 238
Score = 36.1 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 30/87 (34%)
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
+ + SM + GD+L +++ + D + + + K
Sbjct: 133 REALPTFTSMSNLALMPAHGDSMEESFSDGDLLWIDTGVCEVKIDAVYVLALNDQLYVKR 192
Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211
L R SI ++S N Y +E +
Sbjct: 193 LQRRPDGSILMISDNKKYEPYLIENGE 219
>gi|83592360|ref|YP_426112.1| phage repressor [Rhodospirillum rubrum ATCC 11170]
gi|83575274|gb|ABC21825.1| phage repressor [Rhodospirillum rubrum ATCC 11170]
Length = 265
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM P GD+ ++++A + D L G+ K L I
Sbjct: 172 PQRAIAVAVHGDSMEPALSDGDLALIDTATRALERDDLYAFLLEGEGYIKRLQKAGAAVI 231
Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
+ S N Y T+ + +
Sbjct: 232 -VHSDNPAYSDWTIPREIMASMH 253
>gi|315162341|gb|EFU06358.1| signal peptidase I [Enterococcus faecalis TX0645]
Length = 173
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM +GD++++ + D ++ K TG I+ K +I G ++
Sbjct: 26 RVDGHSMQKTLNQGDMIVMEKFSAIKRFDVVVFKTDTGSILIKRVIGLPGEAV 78
>gi|257082443|ref|ZP_05576804.1| peptidase S24 [Enterococcus faecalis E1Sol]
gi|256990473|gb|EEU77775.1| peptidase S24 [Enterococcus faecalis E1Sol]
Length = 170
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM +GD++++ + D ++ K TG I+ K +I G ++
Sbjct: 23 RVDGHSMQKTLNQGDMIVMEKFSAIKRFDVVVFKTDTGSILIKRVIGLPGEAV 75
>gi|255972684|ref|ZP_05423270.1| peptidase S24 [Enterococcus faecalis T1]
gi|255975736|ref|ZP_05426322.1| peptidase S24 [Enterococcus faecalis T2]
gi|256762609|ref|ZP_05503189.1| peptidase S24 [Enterococcus faecalis T3]
gi|256961818|ref|ZP_05565989.1| peptidase S24 [Enterococcus faecalis Merz96]
gi|257085075|ref|ZP_05579436.1| signal peptidase I [Enterococcus faecalis Fly1]
gi|257419405|ref|ZP_05596399.1| peptidase S24 [Enterococcus faecalis T11]
gi|255963702|gb|EET96178.1| peptidase S24 [Enterococcus faecalis T1]
gi|255968608|gb|EET99230.1| peptidase S24 [Enterococcus faecalis T2]
gi|256683860|gb|EEU23555.1| peptidase S24 [Enterococcus faecalis T3]
gi|256952314|gb|EEU68946.1| peptidase S24 [Enterococcus faecalis Merz96]
gi|256993105|gb|EEU80407.1| signal peptidase I [Enterococcus faecalis Fly1]
gi|257161233|gb|EEU91193.1| peptidase S24 [Enterococcus faecalis T11]
Length = 170
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM +GD++++ + D ++ K TG I+ K +I G ++
Sbjct: 23 RVDGHSMQKTLNQGDMIVMEKFSAIKRFDVVVFKTDTGSILIKRVIGLPGEAV 75
>gi|229549900|ref|ZP_04438625.1| signal peptidase I [Enterococcus faecalis ATCC 29200]
gi|256959089|ref|ZP_05563260.1| peptidase S24 [Enterococcus faecalis DS5]
gi|256965015|ref|ZP_05569186.1| peptidase S24 [Enterococcus faecalis HIP11704]
gi|257079120|ref|ZP_05573481.1| peptidase S24 [Enterococcus faecalis JH1]
gi|257086966|ref|ZP_05581327.1| peptidase S24 [Enterococcus faecalis D6]
gi|257089994|ref|ZP_05584355.1| peptidase S24 [Enterococcus faecalis CH188]
gi|257422503|ref|ZP_05599493.1| signal peptidase I [Enterococcus faecalis X98]
gi|293382881|ref|ZP_06628799.1| signal peptidase I [Enterococcus faecalis R712]
gi|293389632|ref|ZP_06634087.1| signal peptidase I [Enterococcus faecalis S613]
gi|307269491|ref|ZP_07550830.1| signal peptidase I [Enterococcus faecalis TX4248]
gi|307273111|ref|ZP_07554357.1| signal peptidase I [Enterococcus faecalis TX0855]
gi|307277954|ref|ZP_07559038.1| signal peptidase I [Enterococcus faecalis TX0860]
gi|307289218|ref|ZP_07569174.1| signal peptidase I [Enterococcus faecalis TX0109]
gi|312899527|ref|ZP_07758857.1| signal peptidase I [Enterococcus faecalis TX0470]
gi|312903428|ref|ZP_07762608.1| signal peptidase I [Enterococcus faecalis TX0635]
gi|312907648|ref|ZP_07766639.1| signal peptidase I [Enterococcus faecalis DAPTO 512]
gi|312910265|ref|ZP_07769112.1| signal peptidase I [Enterococcus faecalis DAPTO 516]
gi|312951610|ref|ZP_07770505.1| signal peptidase I [Enterococcus faecalis TX0102]
gi|229304973|gb|EEN70969.1| signal peptidase I [Enterococcus faecalis ATCC 29200]
gi|256949585|gb|EEU66217.1| peptidase S24 [Enterococcus faecalis DS5]
gi|256955511|gb|EEU72143.1| peptidase S24 [Enterococcus faecalis HIP11704]
gi|256987150|gb|EEU74452.1| peptidase S24 [Enterococcus faecalis JH1]
gi|256994996|gb|EEU82298.1| peptidase S24 [Enterococcus faecalis D6]
gi|256998806|gb|EEU85326.1| peptidase S24 [Enterococcus faecalis CH188]
gi|257164327|gb|EEU94287.1| signal peptidase I [Enterococcus faecalis X98]
gi|291079546|gb|EFE16910.1| signal peptidase I [Enterococcus faecalis R712]
gi|291081025|gb|EFE17988.1| signal peptidase I [Enterococcus faecalis S613]
gi|306499927|gb|EFM69288.1| signal peptidase I [Enterococcus faecalis TX0109]
gi|306505351|gb|EFM74537.1| signal peptidase I [Enterococcus faecalis TX0860]
gi|306510096|gb|EFM79120.1| signal peptidase I [Enterococcus faecalis TX0855]
gi|306514111|gb|EFM82687.1| signal peptidase I [Enterococcus faecalis TX4248]
gi|310626676|gb|EFQ09959.1| signal peptidase I [Enterococcus faecalis DAPTO 512]
gi|310630327|gb|EFQ13610.1| signal peptidase I [Enterococcus faecalis TX0102]
gi|310633304|gb|EFQ16587.1| signal peptidase I [Enterococcus faecalis TX0635]
gi|311289538|gb|EFQ68094.1| signal peptidase I [Enterococcus faecalis DAPTO 516]
gi|311293397|gb|EFQ71953.1| signal peptidase I [Enterococcus faecalis TX0470]
gi|315027836|gb|EFT39768.1| signal peptidase I [Enterococcus faecalis TX2137]
gi|315037092|gb|EFT49024.1| signal peptidase I [Enterococcus faecalis TX0027]
gi|315145029|gb|EFT89045.1| signal peptidase I [Enterococcus faecalis TX2141]
gi|315147374|gb|EFT91390.1| signal peptidase I [Enterococcus faecalis TX4244]
gi|315150423|gb|EFT94439.1| signal peptidase I [Enterococcus faecalis TX0012]
gi|315152369|gb|EFT96385.1| signal peptidase I [Enterococcus faecalis TX0031]
gi|315156170|gb|EFU00187.1| signal peptidase I [Enterococcus faecalis TX0043]
gi|315158188|gb|EFU02205.1| signal peptidase I [Enterococcus faecalis TX0312]
gi|315164127|gb|EFU08144.1| signal peptidase I [Enterococcus faecalis TX1302]
gi|315168922|gb|EFU12939.1| signal peptidase I [Enterococcus faecalis TX1341]
gi|315169843|gb|EFU13860.1| signal peptidase I [Enterococcus faecalis TX1342]
gi|315172409|gb|EFU16426.1| signal peptidase I [Enterococcus faecalis TX1346]
gi|315576111|gb|EFU88302.1| signal peptidase I [Enterococcus faecalis TX0309B]
gi|315577764|gb|EFU89955.1| signal peptidase I [Enterococcus faecalis TX0630]
gi|315580685|gb|EFU92876.1| signal peptidase I [Enterococcus faecalis TX0309A]
Length = 173
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM +GD++++ + D ++ K TG I+ K +I G ++
Sbjct: 26 RVDGHSMQKTLNQGDMIVMEKFSAIKRFDVVVFKTDTGSILIKRVIGLPGEAV 78
>gi|29376232|ref|NP_815386.1| signal peptidase I [Enterococcus faecalis V583]
gi|227518869|ref|ZP_03948918.1| signal peptidase I [Enterococcus faecalis TX0104]
gi|227553483|ref|ZP_03983532.1| signal peptidase I [Enterococcus faecalis HH22]
gi|294781609|ref|ZP_06746945.1| signal peptidase I [Enterococcus faecalis PC1.1]
gi|29343695|gb|AAO81456.1| signal peptidase I [Enterococcus faecalis V583]
gi|227073660|gb|EEI11623.1| signal peptidase I [Enterococcus faecalis TX0104]
gi|227177394|gb|EEI58366.1| signal peptidase I [Enterococcus faecalis HH22]
gi|294451305|gb|EFG19771.1| signal peptidase I [Enterococcus faecalis PC1.1]
gi|323480839|gb|ADX80278.1| signal peptidase I [Enterococcus faecalis 62]
gi|327535244|gb|AEA94078.1| signal peptidase I [Enterococcus faecalis OG1RF]
gi|329571927|gb|EGG53605.1| signal peptidase I [Enterococcus faecalis TX1467]
Length = 184
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ SM +GD++++ + D ++ K TG I+ K +I G ++
Sbjct: 37 RVDGHSMQKTLNQGDMIVMEKFSAIKRFDVVVFKTDTGSILIKRVIGLPGEAV 89
>gi|188592118|ref|YP_001796716.1| flagellar basal body rod protein flgf [Cupriavidus taiwanensis LMG
19424]
gi|170938492|emb|CAP63479.1| Flagellar basal-body rod protein flgF [Cupriavidus taiwanensis LMG
19424]
Length = 247
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DR 170
GN W V P+ + A+Q + Q S LP+ G L + QV G D
Sbjct: 84 GNGWLVVQAPDGSEAYTRAGALQVAQDG-QVQTISGLPVMGDGGPLAVPPGSQVTIGTDG 142
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G+ A + + L +N P D + SD
Sbjct: 143 TITARGPGEASAGL-----AQVGRLRVVNP--PNDAIARSD 176
>gi|209885431|ref|YP_002289288.1| LexA repressor [Oligotropha carboxidovorans OM5]
gi|226694236|sp|B6JG34|LEXA_OLICO RecName: Full=LexA repressor
gi|209873627|gb|ACI93423.1| LexA repressor [Oligotropha carboxidovorans OM5]
Length = 232
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ + SM GD+ ++ + + GD ++
Sbjct: 131 TISVPPDMLGAGEHYALE-------VRGDSMVEAGILDGDMALIQRSENADTGDIVVALI 183
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
+ K R SI L N Y V + + +
Sbjct: 184 DEEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRV 219
>gi|296393371|ref|YP_003658255.1| LexA family transcriptional repressor [Segniliparus rotundus DSM
44985]
gi|296180518|gb|ADG97424.1| transcriptional repressor, LexA family [Segniliparus rotundus DSM
44985]
Length = 289
Score = 36.1 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 15/150 (10%)
Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
A + +L + +PLL +G+ V + + +P
Sbjct: 139 AISAPSGELTPESEEPQSQPQPTAVLVPLLGRIAAGA------PVLAEEHVEDLFPLPRE 192
Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
+ + + SM+ GD +++ ++ +
Sbjct: 193 LVGTDAAFLL-------SVTGDSMVDAGVHDGDWVVVRPTKTPVYDGEIVAALFDDEATV 245
Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
K L R GR + L N Y E + I
Sbjct: 246 KTL-RRHGREVWLYPENKAYQPFRGEKAKI 274
>gi|330897548|gb|EGH28967.1| putative UV resistance protein [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 143
Score = 36.1 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
SG FP+ + P + A +T+ SM P G L+++ A
Sbjct: 26 SGGFPSPAA-DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNGTKLVIDRART 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
G+ +++ V K L R L S N YP + +IE + W+
Sbjct: 83 PQVGN-VVVAYIDNQPVVKRLDRPRNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137
>gi|326445052|ref|ZP_08219786.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
Length = 226
Score = 36.1 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 15/135 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ + E+PL+ +G+ V +T +P ++A+
Sbjct: 95 EQPENQNAATEVPLVGRIEAGA------PVLAEQMIEDTYLLPRQLVGEGELFAL----- 143
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
K SM GD++ + GD ++ G+ K L++
Sbjct: 144 --KVTGESMIEAAICDGDVVTVRRQQVAQPGD-IVAAMLDGEATVKRFQRDAAGHAWLVA 200
Query: 198 LNCCYPVDTVEMSDI 212
N + + + I
Sbjct: 201 HNPRFQPLAADHAVI 215
>gi|73853267|ref|YP_308763.1| hypothetical protein LH0099 [Escherichia coli]
gi|73476851|gb|AAZ76466.1| hypothetical protein LH0099 [Escherichia coli]
Length = 145
Score = 36.1 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + ++ + + SM + GD+L+++ A +
Sbjct: 28 AGFPS-PATDYAE--QELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKP 84
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD ++I G+ K L R +++ +S + + T+ +I
Sbjct: 85 QHGD-IVIAEIDGEFTVKRLRLRPRPALEPVSDSPEF--RTLYPENI 128
>gi|9507468|ref|NP_052475.1| hypothetical protein ColIb-P9_p029 [Plasmid ColIb-P9]
gi|32470183|ref|NP_863407.1| hypothetical protein R64_p052 [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|58000288|ref|YP_190180.1| ImpA UV protection protein [Escherichia coli]
gi|60115646|ref|YP_209437.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|168758407|ref|ZP_02783414.1| protein ImpA [Escherichia coli O157:H7 str. EC4401]
gi|168770622|ref|ZP_02795629.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
gi|168770704|ref|ZP_02795711.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
gi|191166311|ref|ZP_03028144.1| protein ImpA [Escherichia coli B7A]
gi|193063037|ref|ZP_03044129.1| protein ImpA [Escherichia coli E22]
gi|194447054|ref|YP_002039080.1| protein ImpA [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194447279|ref|YP_002043875.1| protein ImpA [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|209921994|ref|YP_002296067.1| ImpA protein [Escherichia coli SE11]
gi|218711093|ref|YP_002418713.1| Peptidase S24 impA [Escherichia coli ED1a]
gi|226201033|ref|YP_002756645.1| ImpA UV protection protein [Escherichia coli]
gi|256367545|ref|YP_003108104.1| UV protection and mutation protein [Escherichia coli]
gi|300904889|ref|ZP_07122712.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
gi|300939497|ref|ZP_07154158.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|300993848|ref|ZP_07180581.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
gi|301029903|ref|ZP_07192915.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
gi|301307367|ref|ZP_07213372.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
gi|307313339|ref|ZP_07592962.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
gi|309783588|ref|ZP_07678238.1| ImpA UV protection protein [Shigella dysenteriae 1617]
gi|317054706|ref|YP_004119773.1| ImpA [Escherichia coli]
gi|331675767|ref|ZP_08376485.1| protein ImpA [Escherichia coli H591]
gi|124420|sp|P18641|IMPA_SALTY RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
gi|75381951|sp|Q7BSM9|IMPA_SHIFL RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
gi|75485096|sp|Q5J3U9|IMPA_SALCH RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
gi|115502231|sp|Q7M1C0|IMPA_ECOLX RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
gi|47747|emb|CAA37607.1| unnamed protein product [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|4138833|gb|AAD03592.1| ImpA [Shigella flexneri]
gi|4512465|dbj|BAA75114.1| impA [Plasmid ColIb-P9]
gi|20521551|dbj|BAB91615.1| DNA polymerase V subunit ImpA [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|45758204|gb|AAS76416.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|47716802|gb|AAT37579.1| ImpA UV protection protein [Escherichia coli]
gi|189354801|gb|EDU73220.1| protein ImpA [Escherichia coli O157:H7 str. EC4401]
gi|189360479|gb|EDU78898.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
gi|189360565|gb|EDU78984.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
gi|190903738|gb|EDV63454.1| protein ImpA [Escherichia coli B7A]
gi|192931296|gb|EDV83898.1| protein ImpA [Escherichia coli E22]
gi|194358498|gb|ACF56942.1| protein ImpA [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194405583|gb|ACF65804.1| protein ImpA [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|209915172|dbj|BAG80245.1| ImpA protein [Escherichia coli SE11]
gi|218349876|emb|CAQ87282.1| Peptidase S24 impA [Escherichia coli ED1a]
gi|219881662|gb|ACL52032.1| ImpA UV protection protein [Escherichia coli]
gi|228480800|gb|ACQ42126.1| UV protection and mutation protein [Escherichia coli]
gi|284433234|gb|ADB84973.1| ImpA [Escherichia coli]
gi|299877279|gb|EFI85490.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
gi|300305049|gb|EFJ59569.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
gi|300403222|gb|EFJ86760.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
gi|300455635|gb|EFK19128.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
gi|300837451|gb|EFK65211.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
gi|306906761|gb|EFN37271.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
gi|308928484|gb|EFP73941.1| ImpA UV protection protein [Shigella dysenteriae 1617]
gi|315063808|gb|ADT78134.1| UV protection and mutation protein [Escherichia coli W]
gi|315253192|gb|EFU33160.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
gi|315297100|gb|EFU56380.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
gi|321271697|gb|ADW79784.1| UV protection protein UmuD [Escherichia coli]
gi|323184005|gb|EFZ69387.1| protein samA [Escherichia coli 1357]
gi|323380947|gb|ADX53214.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli KO11]
gi|324015240|gb|EGB84459.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
gi|324016378|gb|EGB85597.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
gi|331076541|gb|EGI47817.1| protein ImpA [Escherichia coli H591]
gi|332346557|gb|AEE59889.1| DNA repair protein UmuD [Escherichia coli UMNK88]
gi|333011765|gb|EGK31171.1| protein samA [Shigella flexneri K-227]
Length = 145
Score = 36.1 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + ++ + + SM + GD+L+++ A +
Sbjct: 28 AGFPS-PATDYAE--QELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKP 84
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD ++I G+ K L+ R +++ +S + + T+ +I
Sbjct: 85 QHGD-IVIAEIDGEFTVKRLLLRPRPALEPVSDSPEF--RTLYPENI 128
>gi|294012616|ref|YP_003546076.1| putative phage repressor [Sphingobium japonicum UT26S]
gi|292675946|dbj|BAI97464.1| putative phage repressor [Sphingobium japonicum UT26S]
Length = 220
Score = 35.7 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 24/226 (10%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNK-SKRFGI---EGRNRWPSTESIFKIL 62
+ + +D + T S ++R G +P + KR + ++R +I + L
Sbjct: 3 EDVRALLDEKIAQSKATYSDISRLIGRNPAYIQQFIKRGTPRRLDEQDR----RTIARFL 58
Query: 63 AATNETICQLLDLPFSDGRTTEK----KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
+ L LP + +P L S G D + ++V
Sbjct: 59 ---GISEHLLSGLPLEGAEPAPPSKPARSVSVPRLSLGASAGAGALDIDESAS----DSV 111
Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRL-LIKPR 176
+ G+ + + SM P GD ++++ + + D + +++
Sbjct: 112 AIDSRWLQEIGVR--PPYVSIIRVDGESMTPTLNHGDEIMVDHSDNMSRLRDGIYVLRLD 169
Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA 221
+V +V + R ++S N YP T V + + R++W+
Sbjct: 170 DVLLVKRVAMGLRRDEFSILSDNSLYPNRTNVNPELVTIVGRVVWS 215
>gi|34541593|ref|NP_906072.1| signal peptidase-like protein [Porphyromonas gingivalis W83]
gi|34397910|gb|AAQ66971.1| signal peptidase-related protein [Porphyromonas gingivalis W83]
Length = 208
Score = 35.7 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGD 179
T ++ + +MLP YR G +L +N + GD L+IK + G+
Sbjct: 33 TTYRVRSDAMLPTYRSGKLLWINRIASPDRGDILVIKYRQDGE 75
>gi|258541604|ref|YP_003187037.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256632682|dbj|BAH98657.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256635739|dbj|BAI01708.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
gi|256638794|dbj|BAI04756.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
gi|256641848|dbj|BAI07803.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
gi|256644903|dbj|BAI10851.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
gi|256647958|dbj|BAI13899.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
gi|256651011|dbj|BAI16945.1| transcriptional regulator [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654002|dbj|BAI19929.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
Length = 283
Score = 35.7 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 139 RHKTQDTSMLPLYRKGDILIL--------NSAIQVN-CGDRLLIKPRTGDIVAKVLISRR 189
+ +M PL R GD++++ + V G+ ++ + + ++
Sbjct: 193 ALNVEGQAMEPLLRDGDLVLMDTQRTTLAEPGLFVLFDGESVVCRWAE-----RTFDAQT 247
Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
+ + N + T+ S ++ + R++W
Sbjct: 248 RPVVQISCENKRFSACTLPASRVQILGRVVW 278
>gi|91783348|ref|YP_558554.1| LexA repressor [Burkholderia xenovorans LB400]
gi|296157707|ref|ZP_06840541.1| transcriptional repressor, LexA family [Burkholderia sp. Ch1-1]
gi|123168539|sp|Q13ZI7|LEXA_BURXL RecName: Full=LexA repressor
gi|91687302|gb|ABE30502.1| SOS-response transcriptional repressor, LexA [Burkholderia
xenovorans LB400]
gi|295891953|gb|EFG71737.1| transcriptional repressor, LexA family [Burkholderia sp. Ch1-1]
Length = 216
Score = 35.7 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 27/220 (12%)
Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
MT + +++++ I R ER P+ A L +S N E R ++
Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN-----SAEEHLR-----AL 50
Query: 59 FK--ILA-ATNETIC-QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
+ ++ A + +LL P I L P G + P +
Sbjct: 51 ARKGVIELAAGASRGIRLLAGPEDSPHQFTLPHASIMQLSLPLIGRV----AAGSPILAQ 106
Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
+ P D K + SM GD+L + + G ++
Sbjct: 107 -EHISQHYACDPALFS---SKPDYLLKVRGLSMRDAGIFDGDLLAVQKKSEAKDGQIVIA 162
Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
+ D+ K L R ++L++ N Y VE E
Sbjct: 163 RLGD-DVTVKRLKRRPNG-LELIAENPDYENIFVETGSAE 200
>gi|83816581|ref|YP_444437.1| peptidoglycan N-acetylmuramoylhydrolase [Salinibacter ruber DSM
13855]
gi|83757975|gb|ABC46088.1| peptidoglycan N-acetylmuramoylhydrolase [Salinibacter ruber DSM
13855]
Length = 645
Score = 35.7 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 24/163 (14%)
Query: 54 STESIFKILAATNETICQL-LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
S ++ ++ T I L +L + E+ IPL +P
Sbjct: 431 SLRTVARLADTTRSAIESLNPELRRGRVPPSKERYYVRIPLGSYPRFA------------ 478
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ---DTSMLPLYRKGDILILNSAIQVNCG 168
WN +P+ + YA++ DT + TS L R I S + G
Sbjct: 479 ---WNYAELPDEKKQPATTYAVRRGDTLSEIAVRFGTSTATLKRLNGI----SGAIIRPG 531
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
DRL++ + RR + + P+D +E +
Sbjct: 532 DRLVVPVQEYASALSAADQRRPLRVQYDTSPPTRPLDAIETAR 574
>gi|330959810|gb|EGH60070.1| putative UV resistance protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 143
Score = 35.7 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
SG FP+ + P + A + + SM P G LI++ A
Sbjct: 26 SGGFPSPAA-DHYEPPISLDELVELRA--PHVWLGEAEGMSMQPCGIVSGSRLIIDRARP 82
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
GD ++ +V ++ S+ G + L S N YP +IE + W+
Sbjct: 83 PKVGDVVVAYIFNQPVVKRLDKSQNGSWV-LSSDNPKYPP-IEGTEEIEVFGVVTWS 137
>gi|46581090|ref|YP_011898.1| S24 family peptidase [Desulfovibrio vulgaris str. Hildenborough]
gi|46450511|gb|AAS97158.1| peptidase, S24 family [Desulfovibrio vulgaris str. Hildenborough]
gi|311234768|gb|ADP87622.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
Length = 260
Score = 35.7 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM P GD+++++ + + ++ + K++ + G+ I L S N
Sbjct: 170 MRVDGDSMEPNIMNGDVVLIDQSQRDPRAGKVYAVGVEDVVYLKMVNAAPGK-IVLSSYN 228
Query: 200 CCYPVDTVEMS-----DIEWIARILWA 221
YP ++ I I R +W
Sbjct: 229 AVYPPLEIDARGDLSNGIRIIGRAVWV 255
>gi|78049460|ref|YP_365635.1| putative polymerase V subunit [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037890|emb|CAJ25635.1| putative polymerase V subunit [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 159
Score = 35.7 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 16/114 (14%)
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR------------KGDI 156
P +G P + R ++ LYR GDI
Sbjct: 26 LPVSALRIQLGFPSPAEDFQDD---ELDLNRVLIRNPPATFLYRAEGWSMILAGVCDGDI 82
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
L+++ ++ GD +L V K+L I+L S + +
Sbjct: 83 LVVDRSVSPINGDMVLAIWEGNQPVCKILQ-VAVDHIELHSRSPHCAPIVLAPG 135
>gi|152973662|ref|YP_001338702.1| putative ImpA protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|294496737|ref|YP_003560430.1| putative ImpA protein [Klebsiella pneumoniae]
gi|150958444|gb|ABR80472.1| putative ImpA protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|293339446|gb|ADE44000.1| putative ImpA protein [Klebsiella pneumoniae]
Length = 143
Score = 35.7 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQV 165
FP+ + V H+ + + SM LY GD+L+++ A +
Sbjct: 27 GFPSPAA-DYVE--SDLDLHDYCIRHPSATYYLRASGDSMSDGSLY-NGDLLVVDCAEKP 82
Query: 166 NCGDRLLIKPRTGDIVAK 183
GD +++ G+ K
Sbjct: 83 RHGD-IVVASVQGEFTVK 99
>gi|305667801|ref|YP_003864275.1| putative UV protection protein [Escherichia coli]
gi|304655550|emb|CBM42208.1| putative UV protection protein [Escherichia coli]
Length = 145
Score = 35.7 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
FP+ + + ++ + + SM + GD+L+++ A +
Sbjct: 28 AGFPS-PATDYAE--QELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKP 84
Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD ++I G+ K L+ R +++ +S + + T+ +I
Sbjct: 85 QHGD-IVIAEIDGEFTVKRLLLRPRPALEPVSDSPEF--RTLYPENI 128
>gi|6706995|gb|AAF25536.1|AF104994_6 signal peptidase [Streptomyces coelicolor A3(2)]
gi|2707210|gb|AAC38083.1| signal peptidase-like protein [Streptomyces coelicolor]
Length = 148
Score = 35.7 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
+ SM+P GD+L+++ +V GD ++++
Sbjct: 25 EVTGPSMVPTLHHGDVLLVHWGARVRPGDVVVLR 58
>gi|159039604|ref|YP_001538857.1| putative phage repressor [Salinispora arenicola CNS-205]
gi|157918439|gb|ABV99866.1| putative phage repressor [Salinispora arenicola CNS-205]
Length = 108
Score = 35.7 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ SM+P R GD++++ GDR + R GD+V V SR + +
Sbjct: 9 SAVLVSGPSMVPTLRHGDVVLV------RRGDRGV---RVGDVVIAVFRSRPDLLVVKRA 59
Query: 198 LNCC 201
+
Sbjct: 60 VAPA 63
>gi|293394069|ref|ZP_06638372.1| LexA repressor [Serratia odorifera DSM 4582]
gi|291423431|gb|EFE96657.1| LexA repressor [Serratia odorifera DSM 4582]
Length = 202
Score = 35.7 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 105 DSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQ------DTRHKTQDTSMLPL-YRKGDI 156
D P G P + H G Y + D + SM + GD+
Sbjct: 72 DEDGLPL-IGRVAAGEPLLAQQHIEGHYKVDPSLFKPNADFLLRVNGMSMRDIGILDGDL 130
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
L ++ V G ++++ ++ K L + G ++L+ N + V++
Sbjct: 131 LAVHKTQDVRNG-QVVVARIEDEVTVKRL-KKHGNVVELLPENSEFQPIVVDLRQ 183
>gi|254393262|ref|ZP_05008414.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
gi|197706901|gb|EDY52713.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
Length = 240
Score = 35.7 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 15/135 (11%)
Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
+ + E+PL+ +G+ V +T +P ++A+
Sbjct: 109 EQPENQNAATEVPLVGRIEAGA------PVLAEQMIEDTYLLPRQLVGEGELFAL----- 157
Query: 139 RHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
K SM GD++ + GD ++ G+ K L++
Sbjct: 158 --KVTGESMIEAAICDGDVVTVRRQQVAQPGD-IVAAMLDGEATVKRFQRDAAGHAWLVA 214
Query: 198 LNCCYPVDTVEMSDI 212
N + + + I
Sbjct: 215 HNPRFQPLAADHAVI 229
>gi|296129413|ref|YP_003636663.1| transcriptional repressor, LexA family [Cellulomonas flavigena DSM
20109]
gi|296021228|gb|ADG74464.1| transcriptional repressor, LexA family [Cellulomonas flavigena DSM
20109]
Length = 252
Score = 35.7 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 18/145 (12%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
P + R +P++ +G + + +P ++ +
Sbjct: 119 PDTPERDGAPAPSYVPVVGRIAAGG------PILAEQVVEDVFPLPRQLVGEGELFLL-- 170
Query: 136 QDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
K SM GD +++ V ++ G+ K L GR +
Sbjct: 171 -----KVAGDSMIEAAICDGDWVVVR-RQPVAENGEIVAAMIDGEATVKTLKRVDGR-VW 223
Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
L+ N Y ++ +D + R++
Sbjct: 224 LLPHNPAYTP--IDGTDATVLGRVV 246
>gi|298290250|ref|YP_003692189.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
gi|296926761|gb|ADH87570.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
Length = 200
Score = 35.7 bits (81), Expect = 5.0, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT- 111
PST ++ ++ A T QL+ P +++ P+L SG S V P
Sbjct: 58 PSTGTLSRLAEALGTTFSQLMAHPVESEIIVIPADRQ-PILSDTASGYHRRCISPVLPGR 116
Query: 112 GNKWNTVGVPEIRSPHNGI 130
G W +P + + +
Sbjct: 117 GVDWVINTLPALGTSGEFV 135
>gi|116694220|ref|YP_728431.1| flagellar basal body rod protein FlgF [Ralstonia eutropha H16]
gi|113528719|emb|CAJ95066.1| flagellar basal body rod protein [Ralstonia eutropha H16]
Length = 247
Score = 35.7 bits (81), Expect = 5.0, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DR 170
GN W V P+ + A+Q + Q S LP+ G L + QV G D
Sbjct: 84 GNGWLVVQAPDGTEAYTRAGALQVAQDG-QVQTISGLPVMGDGGPLAVPPGSQVTIGTDG 142
Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
+ G+ A + + L +N P D + D
Sbjct: 143 TITARGPGEASAGL-----AQVGRLRVVNP--PNDAIARGD 176
>gi|323517813|gb|ADX92194.1| hypothetical protein ABTW07_1765 [Acinetobacter baumannii
TCDC-AB0715]
gi|323518836|gb|ADX93217.1| hypothetical protein ABTW07_2793 [Acinetobacter baumannii
TCDC-AB0715]
Length = 241
Score = 35.7 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-----GDRLLIKPRTGDIVAKVLISR 188
SM P G ++I++ VN ++ ++ K L R
Sbjct: 142 PKNLVEVDVDGDSMEPRIPSGSVVIID--KSVNRLEQVQNRKVYAIRYGDELKIKRLSRR 199
Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
++ + S N Y + VE D+E I I
Sbjct: 200 YDGALIIDSDNPSYEREIVEPQDLEHIGII 229
>gi|294815375|ref|ZP_06774018.1| Signal peptidase I [Streptomyces clavuligerus ATCC 27064]
gi|294327974|gb|EFG09617.1| Signal peptidase I [Streptomyces clavuligerus ATCC 27064]
Length = 252
Score = 35.7 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTVGVPEIRSPHNGI 130
P +D P +G+ + P G W + + + +
Sbjct: 9 PGADAAEPSPPASREP-----EAGAPARYARLRRPLRRSGGGVSWRGLLIQAVAVAAAVL 63
Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLL 172
+ + SM PL R GD +++N GD ++
Sbjct: 64 LFSRFVVQPFQIPSGSMEPLLRSGDRVLVNKLAYGDDSPPRRGDVVV 110
>gi|327480337|gb|AEA83647.1| LexA repressor [Pseudomonas stutzeri DSM 4166]
Length = 202
Score = 35.7 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 16/136 (11%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-------NGIYAIQT 135
T + I + F P+ + P G P + H + +
Sbjct: 59 TPGASRGIRIPDFEPAPA-----ETGLPI-IGRVAAGAPILAQQHVEESCQISPAFFHPR 112
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D + SM + GD+L +++ + G ++ + ++ K G+ +
Sbjct: 113 ADYLLRVHGMSMKDIGIYDGDLLAVHTTREARNGQIVVARVGD-EVTVKRFKR-DGKKVW 170
Query: 195 LMSLNCCYPVDTVEMS 210
L++ N + V++
Sbjct: 171 LLAENPEFAPIEVDLE 186
>gi|332560967|ref|ZP_08415285.1| putative phage repressor [Rhodobacter sphaeroides WS8N]
gi|332274765|gb|EGJ20081.1| putative phage repressor [Rhodobacter sphaeroides WS8N]
Length = 251
Score = 35.7 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 144 DTSMLPLYRKGDILILNSA-----------IQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
SM P GD+L++++A ++ G V K +
Sbjct: 158 GDSMSPSIHDGDMLLIDTAQDDAPFKVREPADTRPAMIYALRDDLGARV-KRIERIAPGR 216
Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILW 220
I L+S N + + D+ + R++W
Sbjct: 217 IMLLSDNPAFAPEVKSDGDVTILGRVVW 244
>gi|224282243|ref|ZP_03645565.1| putative phage regulatory protein [Bifidobacterium bifidum NCIMB
41171]
gi|311063583|ref|YP_003970308.1| XRE family transcriptional regulator [Bifidobacterium bifidum
PRL2010]
gi|313139384|ref|ZP_07801577.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
gi|310865902|gb|ADP35271.1| XRE family transcriptional regulator [Bifidobacterium bifidum
PRL2010]
gi|313131894|gb|EFR49511.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
Length = 113
Score = 35.7 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
++ +H + S LA +AG T N SK E R P++ ++ I A + T LL
Sbjct: 11 KLMRQHGINQSQLAARAG--TTQPNISKYLAGE---REPTSSTLANIATALHTTSEFLLG 65
Query: 75 LPFSDGRTT 83
LP S+ T
Sbjct: 66 LPESNADTP 74
>gi|317054659|ref|YP_004119726.1| UmuD [Escherichia coli]
gi|119434067|gb|ABL75134.1| UmuD-like protein [Acinetobacter baumannii]
gi|284433188|gb|ADB84927.1| UmuD [Escherichia coli]
Length = 142
Score = 35.7 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + P I + + S++ GD++ ++ + +
Sbjct: 23 PAGFPSPASDD---LEDEIDPIAWIVPHPSATFWWRVSGDSLVDEGIHDGDLIAVDRSGK 79
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGR-SIDLMSL-NCCYPVDTVEMSDIEW 214
G R+++ G I K L R G+ +D S N P+ + ++I W
Sbjct: 80 ARVG-RIVLAVVDGSITLKKLAKRDGQYWLDPKSKGNNYQPIRITDQTEI-W 129
>gi|145596208|ref|YP_001160505.1| peptidase S24, S26A and S26B [Salinispora tropica CNB-440]
gi|145305545|gb|ABP56127.1| peptidase S24, S26A and S26B [Salinispora tropica CNB-440]
Length = 133
Score = 35.7 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
+ SM+P R GD +++ GDR + R GD+V V SR + +
Sbjct: 34 SAVLVTGPSMVPTLRHGDAVLV------RRGDRGI---RAGDVVVAVFRSRPDLLVVKRA 84
Query: 198 LNC 200
+
Sbjct: 85 VGP 87
>gi|90419608|ref|ZP_01227518.1| SOS response transcriptional repressor LexA [Aurantimonas
manganoxydans SI85-9A1]
gi|90336545|gb|EAS50286.1| SOS response transcriptional repressor LexA [Aurantimonas
manganoxydans SI85-9A1]
Length = 239
Score = 35.7 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 28/149 (18%)
Query: 73 LDLPFSDGRTTEKKEKE---IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
P + + K IP++ +G + + +++ VP
Sbjct: 97 TARPAPASQPSPAKASASTAIPVMGRIAAGV------PISAIQHNTHSIVVPPDMLGSGE 150
Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD-----RLLIKPRTGDIVAK 183
YA++ + SM GD ++ + GD +++ +
Sbjct: 151 HYALE-------VKGDSMIEAGILDGDTVV------IRRGDTATPGEIVVALVDDEEATL 197
Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
RRG +I L + N Y +
Sbjct: 198 KRFRRRGDTIALEAANPAYETRIFGSDRV 226
>gi|298485973|ref|ZP_07004047.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298159450|gb|EFI00497.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 238
Score = 35.3 bits (80), Expect = 5.5, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
Y + SM + GD LI++ I D + + G + K
Sbjct: 134 REQGITYTHDKNLSVITGFGESMGATFASGDPLIVDQGINEVVVDGVYVFTLDGMLYIKR 193
Query: 185 LISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWA 221
L + + ++S N +P + E++ I AR+L A
Sbjct: 194 LQRL-PKMLRMLSDNETFPPYDIKGDELNSIVIHARVLLA 232
>gi|153009649|ref|YP_001370864.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
gi|151561537|gb|ABS15035.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
Length = 243
Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 19/150 (12%)
Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
SD + ++ +L G G F +G P + ++A+
Sbjct: 99 IISDAGHIDTGPLDVEILGVAVGGDDGDFTLNGEVSG----YARRPAGIAHLRKVFAL-- 152
Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRS- 192
SM+P Y G++L V GD ++I+ P G+ V K I R +
Sbjct: 153 -----HVLSDSMVPRYEPGELLYCGGRDAV-SGDDVVIEMFPEQGESVGKAYIKRLVKRS 206
Query: 193 -IDLMS--LNCCYPVDTVEMSDIEWIARIL 219
+L+ N + I+ + R++
Sbjct: 207 KTELICKQYNPAKE-LVFDPYAIKNMWRVI 235
>gi|116671024|ref|YP_831957.1| signal peptidase I [Arthrobacter sp. FB24]
gi|116611133|gb|ABK03857.1| signal peptidase I, Serine peptidase, MEROPS family S26A
[Arthrobacter sp. FB24]
Length = 225
Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 142 TQDTSMLPLYRKGDILILNSA----IQVNCGDRLL 172
SM PL+ GD ++++ V GD ++
Sbjct: 40 IPSASMEPLFGAGDRILVSRTDFQSEPVRRGDVVV 74
>gi|117925395|ref|YP_866012.1| SOS mutagenesis protein UmuD [Magnetococcus sp. MC-1]
gi|117609151|gb|ABK44606.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
[Magnetococcus sp. MC-1]
Length = 238
Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
R E+ IPL + FP+ + V + +
Sbjct: 103 RPAEQARFTIPLAGSRVA--------AGFPSPAD-DFVE--AQLDLNQHLVKHPAATFFV 151
Query: 141 KTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM GDIL+++ ++Q G +++I G++ K L R G+ LM N
Sbjct: 152 RVAGESMIEAGIHPGDILVVDRSLQPESG-QIVIAVLDGELTVKRLEKRAGKLF-LMPAN 209
Query: 200 CCYPV 204
+
Sbjct: 210 RNFTP 214
>gi|167581994|ref|ZP_02374868.1| LexA repressor [Burkholderia thailandensis TXDOH]
gi|167620159|ref|ZP_02388790.1| LexA repressor [Burkholderia thailandensis Bt4]
gi|257139231|ref|ZP_05587493.1| LexA repressor [Burkholderia thailandensis E264]
gi|172046092|sp|Q2SVP7|LEXA_BURTA RecName: Full=LexA repressor
Length = 215
Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD+L + + G ++ + D+ K L R G ++L++ N Y V+
Sbjct: 141 DGDLLAVQKRAEAKDGQIIVARLGD-DVTVKRLKRRPGG-VELIAENPDYENIFVKAGSA 198
Query: 213 E 213
E
Sbjct: 199 E 199
>gi|65317308|ref|ZP_00390267.1| COG1158: Transcription termination factor [Bacillus anthracis
str. A2012]
Length = 167
Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 12 AIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGR--NRWPSTESIFKILAATNE 67
+I R+A +NL PSG G+DP +F++ KRF R S + L T
Sbjct: 8 SITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTXLATALVDTGS 67
Query: 68 TICQ 71
+
Sbjct: 68 XMDD 71
>gi|162146322|ref|YP_001600781.1| peptidase [Gluconacetobacter diazotrophicus PAl 5]
gi|161784897|emb|CAP54440.1| putative peptidase [Gluconacetobacter diazotrophicus PAl 5]
Length = 212
Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 11/107 (10%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
++A + + + SM P GD++ ++ A + + + ++ K L
Sbjct: 102 PQSVWAARDRLVALTVRGDSMEPTLSNGDLVFVDRARERLVSGAIYVIRAGEQLLVKRLE 161
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE--W---------IARILWAS 222
R + + S N Y V W + RI+W S
Sbjct: 162 QRIDGDLVVTSDNKRYSEQVVSAEQARQLWNGGNAPATIVGRIVWRS 208
>gi|254673413|emb|CBA08743.1| prophage MuMc02, peptidase, family S24 [Neisseria meningitidis
alpha275]
Length = 213
Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 24/168 (14%)
Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
P +E++ KI +I LL E P G D+ F
Sbjct: 42 PKSETLKKIKQLKGCSIDWLLT------GEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFV 95
Query: 113 NKWNTVGVPEIR---SPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGD 155
+++ ++ + + + SM + GD
Sbjct: 96 PRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRNTKNLSVISVKGDSMEGVLNDGD 155
Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
+++N + D L + +++ K L G I+++S N YP
Sbjct: 156 SILVNHSENTPR-DGLYVLRINENLLVKRLQIVPGGIINVISANEAYP 202
>gi|94985466|ref|YP_604830.1| putative prophage repressor [Deinococcus geothermalis DSM 11300]
gi|94555747|gb|ABF45661.1| LexA-like repressor [Deinococcus geothermalis DSM 11300]
Length = 236
Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 43/156 (27%), Gaps = 22/156 (14%)
Query: 58 IFKILAATNETICQL----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
+ + AT + + L +P++ +G+ P +
Sbjct: 72 LADLEKATGVDLGVVKAWTLAGSSPQTLAPVPNIHRVPVIGLASAGA---------PVAD 122
Query: 114 KWNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCG 168
+ + P + +Q D R GD L ++ + + G
Sbjct: 123 EQDERIIGWEYPAADEYRPHMLCLQVDGESM---DNGEADGLRDGDRLYVDTRDLTLQEG 179
Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
++ IV K + G L S N +
Sbjct: 180 KVYVVHVHGNGIVVKR-ARQLGNDWWLFSDNANFSP 214
>gi|217977841|ref|YP_002361988.1| LexA repressor [Methylocella silvestris BL2]
gi|254809102|sp|B8EK86|LEXA_METSB RecName: Full=LexA repressor
gi|217503217|gb|ACK50626.1| SOS-response transcriptional repressor, LexA [Methylocella
silvestris BL2]
Length = 236
Score = 35.3 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q + + + SM+ D +++ GD ++ + K L R S
Sbjct: 145 QGEHYALEVRGDSMIDAGIFDADTVLIRKQDTAETGDIVVALIDDEEATLKRLRRRGA-S 203
Query: 193 IDLMSLNCCYPVDTVEMSDI 212
I L + N Y +
Sbjct: 204 IALEAANPAYETRIFGPDRV 223
>gi|187478005|ref|YP_786029.1| LexA repressor [Bordetella avium 197N]
gi|123738735|sp|Q2L247|LEXA_BORA1 RecName: Full=LexA repressor
gi|115422591|emb|CAJ49116.1| LexA repressor [Bordetella avium 197N]
Length = 213
Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
Q D K + SM +GD+L + + + G ++ + D+ K L R
Sbjct: 119 QAPDYLLKVRGMSMRDAGILEGDLLAVKKSSEARNGQIIVARLGD-DVTVKRLQRHGSR- 176
Query: 193 IDLMSLNCCYPVDTVEMSD 211
I+L+ N + V D
Sbjct: 177 IELLPENPEFSPILVAPDD 195
>gi|303284367|ref|XP_003061474.1| Aspartate/tyrosine/aromatic aminotransferase [Micromonas pusilla
CCMP1545]
gi|226456804|gb|EEH54104.1| Aspartate/tyrosine/aromatic aminotransferase [Micromonas pusilla
CCMP1545]
Length = 452
Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETICQLLDLPFSDG 80
TPS +AR AG+D K+K +G T ESI + ++ T +
Sbjct: 94 TPSHVAR-AGIDAIDAGKTKYSSPDGIP----TLKESIARYVSRTRGLDDDAVSPDEVVV 148
Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
K P L G + FPT
Sbjct: 149 GPGAKPGLFFPALAVISPGDEVMYPDPGFPT 179
>gi|256396806|ref|YP_003118370.1| phage repressor [Catenulispora acidiphila DSM 44928]
gi|256363032|gb|ACU76529.1| putative phage repressor [Catenulispora acidiphila DSM 44928]
Length = 121
Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIK--PRTGDIVA 182
H+ SM+P R GD +++ A + GD ++ + R G+++
Sbjct: 18 HRVTGASMVPALRDGDFVLVRRARPGRIRPGDVVVARHPARAGELLI 64
>gi|71736889|ref|YP_274369.1| prophage PSPPH03, Cro/CI family transcriptional regulator
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557442|gb|AAZ36653.1| prophage PSPPH03, transcriptional regulator, Cro/CI family
[Pseudomonas syringae pv. phaseolicola 1448A]
Length = 286
Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTG 178
P +A SM P + D L+++ I + GD + + G
Sbjct: 180 PRHLREMGVEFAEHFHLKMVTGWGQSMAPTIKHRDPLLVD--ISIREFAGDGIYMFSWDG 237
Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
+ K L I ++S N +P +T+++ + AR+ +W
Sbjct: 238 HLYIKRLQWMGDGKIKMISDNTRHPPETIKVDETFIQARVLLVW 281
>gi|209543675|ref|YP_002275904.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
gi|209531352|gb|ACI51289.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
Length = 212
Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 11/107 (10%)
Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
++A + + + SM P GD++ ++ A + + + ++ K L
Sbjct: 102 PQSVWAARDRLVALTVRGDSMEPTLSNGDLVFVDRARERLVSGAIYVIRAGEQLLVKRLE 161
Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE--W---------IARILWAS 222
R + + S N Y V W + RI+W S
Sbjct: 162 QRIDGDLVVTSDNKRYSEQVVSAEQARQLWNGGNAPATIVGRIVWRS 208
>gi|330994780|ref|ZP_08318702.1| LexA repressor [Gluconacetobacter sp. SXCC-1]
gi|329758041|gb|EGG74563.1| LexA repressor [Gluconacetobacter sp. SXCC-1]
Length = 224
Score = 35.3 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
+ VP YA++ + GD++I+ Q G ++++
Sbjct: 124 IAVPADMLGKASHYALEVMGDSMQDAG------ILDGDMVIIREGTQATDG-QIVVALVD 176
Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
GD V I G I L+ N Y + S +
Sbjct: 177 GDEVTLKRIRHEGGEIALIPANTRYETRLLPASRV 211
>gi|326776661|ref|ZP_08235926.1| nickel-type superoxide dismutase maturation protease [Streptomyces
cf. griseus XylebKG-1]
gi|326656994|gb|EGE41840.1| nickel-type superoxide dismutase maturation protease [Streptomyces
cf. griseus XylebKG-1]
Length = 142
Score = 35.3 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE R G + + SM+P GD+L++ V+ GD ++++
Sbjct: 2 PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGAPVSPGDVVILR 55
>gi|212702484|ref|ZP_03310612.1| hypothetical protein DESPIG_00501 [Desulfovibrio piger ATCC 29098]
gi|212674145|gb|EEB34628.1| hypothetical protein DESPIG_00501 [Desulfovibrio piger ATCC 29098]
Length = 233
Score = 35.3 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM+P + D+++L+ RL I K + G+ I L S N
Sbjct: 143 MRVSGDSMVPEIQDNDLVLLDQGQTEIVSGRLYAIGFEDAIYIKRIDLLPGQ-IVLHSTN 201
Query: 200 CCYPVDTVEMS-----DIEWIARILWA 221
YP T+++S I R+LW+
Sbjct: 202 PAYPPVTLDLSGDCAEQFRVIGRVLWS 228
>gi|86139840|ref|ZP_01058406.1| umuD protein [Roseobacter sp. MED193]
gi|85823469|gb|EAQ43678.1| umuD protein [Roseobacter sp. MED193]
Length = 140
Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
FP+ + + + + SM GDIL+++ +I
Sbjct: 21 PAGFPSPA---EDHLEGKLDLNQHLIRRPAATFFVRASGESMRDAGIFDGDILVIDRSIT 77
Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
GD ++I GD+ K L+ L + N +P
Sbjct: 78 PVAGD-VVIAVLHGDLTVKRLMKAGPEGWALQAENAAFPN 116
>gi|108758898|ref|YP_631911.1| peptidase S24-like domain-containing protein [Myxococcus xanthus DK
1622]
gi|108462778|gb|ABF87963.1| peptidase S24-like domain protein [Myxococcus xanthus DK 1622]
Length = 126
Score = 35.3 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
+ + SM P R GD + GD +L+ +V L
Sbjct: 1 MPPALSWVPVHGDSMWPSLRSGDHAGVEPLEGAPRPGD-VLLARFDHALVLHRLRRWEAG 59
Query: 192 SIDLMSLNCCYPVDTVEMS 210
++ L N ++ S
Sbjct: 60 AVALRGDNSPQDDAPLDPS 78
>gi|21232394|ref|NP_638311.1| polymerase V subunit [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|21114172|gb|AAM42235.1| polymerase V subunit [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 159
Score = 35.3 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR------------KGDI 156
P +G P + R ++ LYR GDI
Sbjct: 26 LPVSALRIQLGFPSPAEDFQDD---ELDLNRVLIRNPPATFLYRAEGWSMILAGVCDGDI 82
Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
L+++ +++ GD +L V K+L I+L S + +
Sbjct: 83 LVVDRSVRPIQGDMVLAIWDGNQPVCKILQ-VAVDHIELHSRSPHCAPIVLAPG 135
>gi|218682146|ref|ZP_03529747.1| putative amine oxidase [Rhizobium etli CIAT 894]
Length = 360
Score = 35.3 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
G + I + D ++I + +A +L R GR I+L+S +TV D
Sbjct: 161 NGAVEISVPGSEPEWFDHVVIGTHADEALA-MLADRSGREIELLSAFTYGENETVLHGDE 219
Query: 213 EWIA--RILWAS 222
+ R +WAS
Sbjct: 220 SLMPRRRRVWAS 231
>gi|182436037|ref|YP_001823756.1| putative signal peptidase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178464553|dbj|BAG19073.1| putative signal peptidase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 142
Score = 35.3 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE R G + + SM+P GD+L++ V+ GD ++++
Sbjct: 2 PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGAPVSPGDVVILR 55
>gi|303327568|ref|ZP_07358009.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
gi|302862508|gb|EFL85441.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
Length = 230
Score = 35.3 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
+ SM+P D+++L+ RL I K + G+ I L S+N
Sbjct: 140 MRVSGDSMVPEIFDNDLVLLDRGQTEISPGRLYAVGFEDAIYIKRIDKLPGKII-LHSVN 198
Query: 200 CCYPVDTVEM-----SDIEWIARILWA 221
YP ++++ I R+LW+
Sbjct: 199 PAYPPLSLDLRGDCADQFRVIGRVLWS 225
>gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes]
gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1]
Length = 229
Score = 35.3 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 26/144 (18%)
Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
+L S + + +L +G GFFD +
Sbjct: 88 ELLLSQQTSNVTPLFSVQVLSDIQLSAGLGEGFFDEF------------------ETETV 129
Query: 131 YAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
Y+ + Q D + SM P+Y+ G++ ++ S G + + K L
Sbjct: 130 YSNEEQYGYDIAAWIEGDSMEPIYKNGEVALIRSNGFDYDG-AVYALSWKDSVYIKKL-Y 187
Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD 211
R ++SLN YP + D
Sbjct: 188 RDEDGFRMVSLNKDYPEKFIPYED 211
>gi|297566304|ref|YP_003685276.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
9946]
gi|296850753|gb|ADH63768.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
9946]
Length = 246
Score = 35.3 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 50/222 (22%)
Query: 11 EAIDRMAERHNLTPSGLA--RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA----A 64
+ + A++H + S L+ R+ R G W T+ K L A
Sbjct: 35 RSYNEFADKHGIGRSTLSNLRRG-----------RQSPTGS--WMKTD--LKTLERLALA 79
Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
+ L++ + E ++PL+ + +G G +
Sbjct: 80 LGRPLTDLIERYYESENKHELIRPKVPLVGWVGAGPGQLTEENGIYV------------- 126
Query: 125 SPHNGIYAIQTQDTRHKTQDTS----MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
A + S P+ GDI++++ + ++ + + G
Sbjct: 127 ---EPELARGRNLVAFRVFGDSGCAGRFPICH-GDIILVDQSFNGRPNWPVVAQLKDGSY 182
Query: 181 VAKVLI-SRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219
+ K+L R G L+S N + + +++ RI+
Sbjct: 183 ICKLLKVERTGSY--LVSANPLASNGPTAIPIEEVD---RII 219
>gi|260654737|ref|ZP_05860225.1| toxin-antitoxin system, antitoxin component, Xre family
[Jonquetella anthropi E3_33 E1]
gi|260630452|gb|EEX48646.1| toxin-antitoxin system, antitoxin component, Xre family
[Jonquetella anthropi E3_33 E1]
Length = 240
Score = 34.9 bits (79), Expect = 7.2, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ +G P +A+ ++ ++ +Y GD LI+N A ++ D ++
Sbjct: 135 DELGSP--IDDLRPPFAVPSEGDCLESVG-----VY-DGDKLIINPAAEIRDFDICVVCW 186
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
R + AK + R G +I+L S V V DI+
Sbjct: 187 RD-SLSAKRICKRNG-TIELRS---DSGVMIVPEDDID 219
>gi|251772001|gb|EES52573.1| LexA repressor [Leptospirillum ferrodiazotrophum]
Length = 209
Score = 34.9 bits (79), Expect = 7.2, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 138 TRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
K SM GD +++ + G ++++ G+ K L +RG + L+
Sbjct: 117 FFLKVHGESMKGAAILDGDYVLVRQQETADNG-QIVVATIDGETTVKRL-RQRGDQLSLL 174
Query: 197 SLNCCYPV 204
N +P
Sbjct: 175 PENPDFPE 182
>gi|326443727|ref|ZP_08218461.1| signal peptidase I [Streptomyces clavuligerus ATCC 27064]
Length = 285
Score = 34.9 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTVGVPEIRSPHNGIY 131
+ E P P +G+ + P G W + + + +
Sbjct: 5 RDRAPGADAAEPSPPASREPEAGAPARYARLRRPLRRSGGGVSWRGLLIQAVAVAAAVLL 64
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLL 172
+ + SM PL R GD +++N GD ++
Sbjct: 65 FSRFVVQPFQIPSGSMEPLLRSGDRVLVNKLAYGDDSPPRRGDVVV 110
>gi|163795623|ref|ZP_02189589.1| LexA repressor [alpha proteobacterium BAL199]
gi|159179222|gb|EDP63755.1| LexA repressor [alpha proteobacterium BAL199]
Length = 241
Score = 34.9 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 13/142 (9%)
Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
P T + + I L + +G ++ P+ ++ VP Y
Sbjct: 99 FRGDPPVAAPTPGEGPESIDLPMYGRIAAGTPIEALRDPS----TSIAVPASMLVGGDHY 154
Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
A++ SM+ GD +I+ G ++ + K L + G
Sbjct: 155 ALE-------VSGDSMIDAGILDGDTIIIRQCDTAENGSIVVALVDEQEATLKRLRRK-G 206
Query: 191 RSIDLMSLNCCYPVDTVEMSDI 212
+SI L N Y +
Sbjct: 207 QSIALEPANSAYETRIFGPDRV 228
>gi|83955398|ref|ZP_00964029.1| hypothetical protein NAS141_19144 [Sulfitobacter sp. NAS-14.1]
gi|83840042|gb|EAP79217.1| hypothetical protein NAS141_19144 [Sulfitobacter sp. NAS-14.1]
Length = 119
Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
R+ E LT +GLA+KAGL ++ R NR P E+ KI AA T+ + +
Sbjct: 17 RIDEDPALTEAGLAKKAGLSDSAI----RQYFSKPNRTPRVENARKICAALGTTLEEFMS 72
>gi|87200045|ref|YP_497302.1| LexA repressor [Novosphingobium aromaticivorans DSM 12444]
gi|123763475|sp|Q2G6Q5|LEXA_NOVAD RecName: Full=LexA repressor
gi|87135726|gb|ABD26468.1| SOS-response transcriptional repressor, LexA [Novosphingobium
aromaticivorans DSM 12444]
Length = 234
Score = 34.9 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
T+ VP YA++ SM GD ++ G+ ++
Sbjct: 132 TLPVPAALLGAGEHYALE-------VSGDSMVEAGIFDGDYALVRKTDVARDGEIVVALV 184
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
R + K L +G + L N Y ++
Sbjct: 185 RGEEATLKYLHREKG-MVRLDPANAAYDPQYYRPEEVA 221
>gi|294631347|ref|ZP_06709907.1| signal peptidase [Streptomyces sp. e14]
gi|292834680|gb|EFF93029.1| signal peptidase [Streptomyces sp. e14]
Length = 144
Score = 34.9 bits (79), Expect = 8.3, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
PE+ A+ + SM+P GD L++ ++ GD ++++
Sbjct: 2 PELSQETERGAAV-VPFGLAEVTGPSMVPTLYHGDRLLVRYGARIRPGDVIVLR 54
>gi|146282101|ref|YP_001172254.1| LexA repressor [Pseudomonas stutzeri A1501]
gi|145570306|gb|ABP79412.1| LexA repressor [Pseudomonas stutzeri A1501]
Length = 145
Score = 34.9 bits (79), Expect = 8.3, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 16/136 (11%)
Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-------NGIYAIQT 135
T + I + F P+ + P G P + H + +
Sbjct: 2 TPGASRGIRIPDFEPAPA-----ETGLPI-IGRVAAGAPILAQQHVEESCQISPAFFHPR 55
Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
D + SM + GD+L +++ + G ++ + ++ K G+ +
Sbjct: 56 ADYLLRVHGMSMKDIGIYDGDLLAVHTTREARNGQIVVARVGD-EVTVKRFKR-DGKKVW 113
Query: 195 LMSLNCCYPVDTVEMS 210
L++ N + V++
Sbjct: 114 LLAENPEFAPIEVDLE 129
>gi|297192523|ref|ZP_06909921.1| signal peptidase [Streptomyces pristinaespiralis ATCC 25486]
gi|197718066|gb|EDY61974.1| signal peptidase [Streptomyces pristinaespiralis ATCC 25486]
Length = 237
Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRT 177
T +M P YR G+ L++ + GD +L+
Sbjct: 49 TSYKGATVMSEAMAPTYRPGERLLIERTDAGGIRRGDVVLVDVPD 93
>gi|218886357|ref|YP_002435678.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757311|gb|ACL08210.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 236
Score = 34.9 bits (79), Expect = 8.5, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
+ + SM P GD+++++ + + ++ + KV+ + G+ +
Sbjct: 140 PSSMVLMRVDGDSMEPYVLNGDVVLVDQSQRDPRPGKVYAVGVEELVYLKVVNASPGKLV 199
Query: 194 DLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
L S N Y ++ + I R +W
Sbjct: 200 -LTSYNASYAPLEIDARGDLADGVRIIGRAVWV 231
>gi|299137331|ref|ZP_07030513.1| putative phage repressor [Acidobacterium sp. MP5ACTX8]
gi|298600736|gb|EFI56892.1| putative phage repressor [Acidobacterium sp. MP5ACTX8]
Length = 240
Score = 34.9 bits (79), Expect = 8.6, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
A + + + SM P D ++++ + +RL G+ K L
Sbjct: 139 AKPEEIRVARVRGDSMQPTLWDNDKVVIHLGMTRIRNERLFALAYAGEARVKRLYQLADG 198
Query: 192 SIDLMSLNCC---YPVDTVEMSDI 212
+ ++S N YP + +E D+
Sbjct: 199 RLRVVSDNPDKAKYPDEFIEGDDL 222
>gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
43183]
gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata
DSM 43183]
Length = 188
Score = 34.9 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
+I +I R ER L+ S LA++AG+ ++ S+ G PS E+++ + A
Sbjct: 12 AQIAASIRRERERAGLSLSELAKRAGIAKSTL--SQLESGSGN---PSVETLWALAVALG 66
Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
+L+D P R E P ++ +G
Sbjct: 67 VPFSRLVDPPRPRVRVIRAGEG--PAVHSEKAG 97
>gi|220912964|ref|YP_002488273.1| signal peptidase I [Arthrobacter chlorophenolicus A6]
gi|219859842|gb|ACL40184.1| signal peptidase I [Arthrobacter chlorophenolicus A6]
Length = 225
Score = 34.9 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 142 TQDTSMLPLYRKGDILILNS----AIQVNCGDRLL 172
SM PL GD ++++ A + GD ++
Sbjct: 40 IPSESMEPLLEGGDRILVSRTDFTAEPIRRGDVVV 74
>gi|218891251|ref|YP_002440117.1| cI repressor protein [Pseudomonas aeruginosa LESB58]
gi|218771476|emb|CAW27243.1| cI repressor protein [Pseudomonas aeruginosa LESB58]
Length = 268
Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 143 QDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-- 199
SM P GD+L+++ S I+ ++ G IV +++ S GR I + S N
Sbjct: 180 DGESMEPTINDGDVLLVDLSKIEPEDHQVFVLAGSEGAIVKRLVSSPLGRWI-IRSDNED 238
Query: 200 -CCYPVDTVEMSDIEWIARIL 219
+P + D + RI+
Sbjct: 239 KAEFPDRNLSREDND-EHRII 258
>gi|320093996|ref|ZP_08025822.1| LexA repressor [Actinomyces sp. oral taxon 178 str. F0338]
gi|319979077|gb|EFW10594.1| LexA repressor [Actinomyces sp. oral taxon 178 str. F0338]
Length = 225
Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ +P + ++ ++ GD +++ + GD +
Sbjct: 126 DVFALPTRLTGRGDLFMLEVSGQSMVDAG------ILDGDYVVVRAQADAQSGD-FVAAM 178
Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
G+ K G + L+ N Y
Sbjct: 179 IDGEATVKEFSR-SGGHVWLLPHNEDYAP 206
>gi|239906995|ref|YP_002953736.1| hypothetical protein DMR_23590 [Desulfovibrio magneticus RS-1]
gi|239796861|dbj|BAH75850.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 145
Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKGDIL-ILNSAIQVNC 167
P W P I ++ + S M P+ R+ + + +
Sbjct: 29 PKTGTWT----PTIMETIEIAESLTRPHLLVVRMEDSGMEPVIRRKAYVGLDCDDVTARS 84
Query: 168 GDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEW--IARILWASQ 223
G+ + +V K + + + L+S + + ++ + + R++W Q
Sbjct: 85 GEIYALSIPGEGLVIKQVERDSAGQRLRLVSASPRHAARSLAQGGHAYVVVGRVIWVIQ 143
>gi|264679715|ref|YP_003279624.1| phage repressor [Comamonas testosteroni CNB-2]
gi|262210230|gb|ACY34328.1| putative phage repressor [Comamonas testosteroni CNB-2]
Length = 220
Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
ESI K + LL P +DG + + G+G G
Sbjct: 57 ESIQKFADFFGISTGALLHEPIADGENDFVPVARLSV----QVGAGN-----GRHVGVVT 107
Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
+ + R + SM P R G IL+LN A + ++
Sbjct: 108 SLGLLQFRRDFLKSAGVSPINAAVVTVKGVSMEPTIRDGSILLLNKADREPRAGQIYAFS 167
Query: 176 RTGDIVAKVLISRRG--RSIDLMSLNCCYPVDTVEMSDIEWI-ARILWA 221
G+++ K + G R++ + YP ++ I R +W
Sbjct: 168 WDGEMLVKRFQTIGGVWRAVSDNADKSEYPDIIIDGKAETLIQGRAIWV 216
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.308 0.146 0.485
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,960,774,212
Number of Sequences: 14124377
Number of extensions: 224092469
Number of successful extensions: 577306
Number of sequences better than 10.0: 1982
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 1672
Number of HSP's that attempted gapping in prelim test: 575758
Number of HSP's gapped (non-prelim): 2295
length of query: 223
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 89
effective length of database: 2,950,127,112
effective search space: 262561312968
effective search space used: 262561312968
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 79 (34.9 bits)