BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780444|ref|YP_003064857.1| bacteriophage repressor
protein C1 [Candidatus Liberibacter asiaticus str. psy62]
         (223 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 223

 Score =  463 bits (1192), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK
Sbjct: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV
Sbjct: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI
Sbjct: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ
Sbjct: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 26.2 bits (56), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
           G  D+ +  TG+  N  G      P + I+++Q  D  + T        +R  ++  LNS
Sbjct: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ--DFNYDTLQ------HRLRELSFLNS 204

Query: 162 AIQVNCGDRLLIKPR 176
           ++Q++  D+   +PR
Sbjct: 205 SVQISLIDKRSPEPR 219


>gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 234

 Score = 24.3 bits (51), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 65  TNETICQLLDLPF 77
            NE ICQL+  PF
Sbjct: 117 ANEKICQLIHFPF 129


>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score = 23.9 bits (50), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 90  IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           I  LY P  G+GGF    +    +  +   +P I  PH
Sbjct: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243


>gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 23.9 bits (50), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 30  KAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILA 63
           K G DP +FN     G++G     +     +SIF +L 
Sbjct: 288 KEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLG 325


>gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 116

 Score = 23.5 bits (49), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
           +W+ I R  +RH L  + +           N+ +   I  +N +P
Sbjct: 65  LWKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYP 109


>gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 142

 Score = 23.1 bits (48), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79
           P SF   K  GI+  ++ P  ES   I   T E I ++  L   D
Sbjct: 75  PVSFFLKKEVGIKSGSKLPGKESCGSI---TRENIRKIAQLKMQD 116


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,942
Number of Sequences: 1233
Number of extensions: 5786
Number of successful extensions: 22
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 11
length of query: 223
length of database: 328,796
effective HSP length: 71
effective length of query: 152
effective length of database: 241,253
effective search space: 36670456
effective search space used: 36670456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)