HHsearch alignment for GI: 254780445 and conserved domain: COG0060
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=2184.95 Aligned_cols=915 Identities=42% Similarity=0.752 Sum_probs=857.2
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH-HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 68676015888999888996897799999998647614454-05688884899628225588976215778566878998
Q gi|254780445|r 7 ANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIR-ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVR 85 (963)
Q Consensus 7 ~~y~~tl~lPkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~-~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~R 85 (963)
T Consensus 1 ~~~k~tl~lp~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~R 80 (933)
T COG0060 1 MDYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVR 80 (933)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98433356766777766992341889998888736999999997389980897479997789822656677666663433
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECC
Q ss_conf 76708982678888244420899999998765599833489999999999999999999999999706077636981157
Q gi|254780445|r 86 SFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTM 165 (963)
Q Consensus 86 y~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~ 165 (963)
T Consensus 81 y~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tm 160 (933)
T COG0060 81 YKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTM 160 (933)
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECC
T ss_conf 32045885898899767882288999998287631143348999999999999999999999987636763268980327
Q ss_pred CHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHH
Q ss_conf 76798999999999998796110343022057435736500210132105779998330375311220011000000578
Q gi|254780445|r 166 TRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWT 245 (963)
Q Consensus 166 dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~T 245 (963)
T Consensus 161 d~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~-~~~~~~lviWTTTPWT 239 (933)
T COG0060 161 DPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEG-LDENAYLVIWTTTPWT 239 (933)
T ss_pred CHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEEECCCC-CCCCCEEEEEECCCCC
T ss_conf 889999999999999977975227700122687776003666402566896289997733578-8777079999489877
Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCC-EEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf 8654453227767458998306653111123743551211188888760985-178410011111285754313786651
Q gi|254780445|r 246 IPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVK-IALVCDVKAEDLSKTMCSHPLKKLGYT 324 (963)
Q Consensus 246 l~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~-~~~~~~~~g~~l~g~~~~~Pl~~~~~~ 324 (963)
T Consensus 240 LPaN~aiav~pd~~Y~lv~~----------~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~ 309 (933)
T COG0060 240 LPANLAIAVHPDLDYVLVEV----------NGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYD 309 (933)
T ss_pred CHHCCEEEECCCCCEEEEEE----------CCEEEEEHHHHHHHHHHHCCCCCEEEEEEEEHHHHCCCEEECCCCCCCCC
T ss_conf 31004367679851699997----------88899982998999998709842077677553662878764887654545
Q ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25511443223322445405640578988989987605212210022-03430234455102431001786321135544
Q gi|254780445|r 325 FSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVD-IKVPSPVDGRGFYTTEAPGFSGARVLDDAGEK 403 (963)
Q Consensus 325 ~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~-l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ 403 (963)
T Consensus 310 ~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~---------vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~d----- 375 (933)
T COG0060 310 RAFPVILGDHVTLDDGTGLVHTAPGHGEEDYE---------VGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKD----- 375 (933)
T ss_pred CEEEEEECCEEECCCCCCCEECCCCCCHHHHH---------HHHHCCCCCCCCCCCCCCCCCCCCHHHCCCEECC-----
T ss_conf 60468852767227984105638989878999---------9998299676466688855666543217824000-----
Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 45675452356647982100000012211321013203333102366302245542368999987520000024443432
Q gi|254780445|r 404 GNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNR 483 (963)
Q Consensus 404 ~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r 483 (963)
T Consensus 376 --An~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~-------~~r~~~l~~i~~v~w~P~~~~~R 446 (933)
T COG0060 376 --ANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVD-------KLRDKMLKEINKVNWVPDWGKNR 446 (933)
T ss_pred --CCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHH-------HHHHHHHHHHHCCEEECHHHHHH
T ss_conf --789999999867953153357757986667898069850520336788-------89999999985556887157899
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEECCC-CCEEE-CCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCC-CCCCCCCCCC
Q ss_conf 024430432000011234567225898258-84732-52112444212221188743356401114688-7887554566
Q gi|254780445|r 484 LRSMIENRPDWLLSRQRNWGVPICFFYNEK-GEILL-DKAINDRIIKTFKDQGSDAWFSEGSRDFFLGD-RASEPWIQSK 560 (963)
Q Consensus 484 ~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~-~~~~~-~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~-~~~~~~~r~~ 560 (963)
T Consensus 447 ~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~ 526 (933)
T COG0060 447 FGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVP 526 (933)
T ss_pred HHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCCCCCCCEEEECC
T ss_conf 99997189864365166678853379988999742328999999987743217266515634764578888765059657
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCC
Q ss_conf 421000033354543322222333443---10025544421112455444331178400001303782621345300001
Q gi|254780445|r 561 DILDVWFDSACTHTILLGKDPKLAWPA---DVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKS 637 (963)
Q Consensus 561 DvlDvWfDSg~s~~~~~~~~~~~~~Pa---D~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS 637 (963)
T Consensus 527 DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKS 606 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKS 606 (933)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCCCCCCCC
T ss_conf 54688873789711110775444676555757997066552268999999999728850787763261788888876555
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf 2344333664113675788788871787665544310256777640000011000001224444567--31011127888
Q gi|254780445|r 638 KGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNE--PSLADMPALEQ 715 (963)
Q Consensus 638 ~GNvi~p~~ii~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~--~~~~~l~~~Dk 715 (963)
T Consensus 607 lGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Dr 686 (933)
T COG0060 607 LGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDR 686 (933)
T ss_pred CCCCCCHHHHHHHHCCHHEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHH
T ss_conf 78818989998762763404665615823032027889999999999999999999885058994213351444232179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 75436899999988987654012266889987863024001010201222789980899999999999999999997000
Q gi|254780445|r 716 LMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795 (963)
Q Consensus 716 wiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi 795 (963)
T Consensus 687 wil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPi 766 (933)
T COG0060 687 WILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPI 766 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999846799999999999885665889888788764047999889999999999999999997101
Q ss_pred HHHHHHHHHHHCCCC--CCCEEECCCCCCCHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
Q ss_conf 448999999863886--77345335889983568--98999999999999999999999999738999744403899829
Q gi|254780445|r 796 LPFTAEEAWLSLNPE--AVSVHLELFPIIPLEWQ--NACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYIT 871 (963)
Q Consensus 796 ~P~~aEEiw~~l~~~--~~SI~~~~wP~~~~~~~--d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~ 871 (963)
T Consensus 767 lPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~~~ 846 (933)
T COG0060 767 LPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTE 846 (933)
T ss_pred CHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 03659999974766788753670357655432142457889999988788889999999876653664301057999606
Q ss_pred CHHHHHHHCCCCHHHHEEECEEEEECCCCCCCC---CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 689997722113655112041699637775332---01236786289998178852852175467447885635303788
Q gi|254780445|r 872 DSSLISNIEGENLAEICITSDITIVHSNGPTDA---FRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARD 948 (963)
Q Consensus 872 d~~~l~~l~~~~L~~~~ivS~v~i~~~~~~~~~---~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC 948 (963)
T Consensus 847 ~~~~~~~~-~~~l~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~ 925 (933)
T COG0060 847 DSELLYKL-KPNLGKVLITSAVEVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRC 925 (933)
T ss_pred CHHHHHHH-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 24555431-33478897533799986530356034554303454058888616775674899807667443432479999
Q ss_pred HHHHHHCC
Q ss_conf 99963269
Q gi|254780445|r 949 AAVLHELG 956 (963)
Q Consensus 949 ~~vl~~~g 956 (963)
T Consensus 926 v~~iq~~r 933 (933)
T COG0060 926 VRRIQEMR 933 (933)
T ss_pred HHHHHHCC
T ss_conf 99986439