HHsearch alignment for GI: 254780445 and conserved domain: COG0215
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.87 E-value=5.3e-21 Score=163.54 Aligned_cols=144 Identities=28% Similarity=0.451 Sum_probs=109.8
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 31002554442111245---54443311784000013037-826213453000012344333664113675788788871
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
T Consensus 222 ~DIHgGG~DLi---FPHHENEiAQsea~~g~~~~a~yWmH~G~l~-i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls 297 (464)
T COG0215 222 FDIHGGGSDLI---FPHHENEIAQSEAATGVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLS 297 (464)
T ss_pred CCEECCCCCCC---CCCCCCHHHHHHHHHCCCCCEEEEEECCEEE-ECCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHH
T ss_conf 51246850255---8886308999876429976005868826452-4672765235776679999865487999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 7876655443102567776400000110000012244445673101112788875436899999988987-654012266
Q gi|254780445|r 663 SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEVV 741 (963)
Q Consensus 663 ~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a~ 741 (963)
T Consensus 298 ~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~~----------------~~~~~~~~f~~al~DDfnt~~al 361 (464)
T COG0215 298 SHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAELA----------------DLKEFEARFREALDDDFNTPKAL 361 (464)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77577656689999999999999999999887401322211----------------06789999999987225808999
Q ss_pred HHHHHHHHH
Q ss_conf 889987863
Q gi|254780445|r 742 RQLTNFSNA 750 (963)
Q Consensus 742 ~~i~~F~~~ 750 (963)
T Consensus 362 ~~l~~l~~~ 370 (464)
T COG0215 362 AVLFELAKE 370 (464)
T ss_pred HHHHHHHHH
T ss_conf 999999998