HHsearch alignment for GI: 254780445 and conserved domain: PRK12267
>PRK12267 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=598.31 Aligned_cols=458 Identities=25% Similarity=0.360 Sum_probs=348.5
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 88489962822558897621577856687899876708982678888244420899999998765599833489999999
Q gi|254780445|r 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 53 ~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~----g-----~tP~---- 69 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEA----G-----ITPQ---- 69 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----C-----CCHH----
T ss_conf 99989968998889985545348789999999999846997598487687529999999985----9-----9999----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
T Consensus 70 ---e~~d~~~~~~~~~~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d-- 142 (644)
T PRK12267 70 ---EYVDEISAGFKDLWDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVD-- 142 (644)
T ss_pred ---HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCC--
T ss_conf ---9999999999999998699678--785489889999999999999988997866551232587543336244045--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
T Consensus 143 -------------------------------------------------------------------------------- 142 (644)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (644)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
T Consensus 143 ----------------------------------------------~g-----~-------------------------- 145 (644)
T PRK12267 143 ----------------------------------------------GG-----K-------------------------- 145 (644)
T ss_pred ----------------------------------------------CC-----C--------------------------
T ss_conf ----------------------------------------------78-----6--------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
T Consensus 146 ------------------------------------------------------------cp~cg~~~e~~~ee~yffkL 165 (644)
T PRK12267 146 ------------------------------------------------------------CPDSGHEVELVKEESYFFRM 165 (644)
T ss_pred ------------------------------------------------------------CCCCCCCCEEECCCCEEEEH
T ss_conf ------------------------------------------------------------87789976464056514434
Q ss_pred CCCCCCCHHHHHHHHHHHHC-CCC-CCCCCCCCH-HHHHH-CCCCCCCCCCC-CCCCCEEEEECCCCCEEECCCHHHHHH
Q ss_conf 22455423689999875200-000-244434320-24430-43200001123-456722589825884732521124442
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEK-IRF-FPSSGKNRL-RSMIE-NRPDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRII 527 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~-v~~-~P~~~k~r~-~~~i~-~~~DW~ISRqR-~WG~PIPi~~~e~~~~~~~~~~~~~i~ 527 (963)
T Consensus 166 ~~-------~~~~L~~~~~~~p~~i~p~~~~ne~~~~~l~~gL~D~~ISR~~~~WGipvP~----d-------------- 220 (644)
T PRK12267 166 SK-------YADRLLEFYEENPDFIQPESRKNEMLNNFIKPGLEDLAVSRTSFDWGIPVPS----D-------------- 220 (644)
T ss_pred HH-------HHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC----C--------------
T ss_conf 66-------7899999996099746762588799999985778554302477888885789----8--------------
Q ss_pred HHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 12221188743356401114688788755456642100003335454332------222233344310025544421112
Q gi|254780445|r 528 KTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL------GKDPKLAWPADVYLEGSDQHRGWF 601 (963)
Q Consensus 528 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~------~~~~~~~~PaD~~~eG~Dq~RgWF 601 (963)
T Consensus 221 -------------------------------~~~v~YVWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~--F 267 (644)
T PRK12267 221 -------------------------------PKHVVYVWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILR--F 267 (644)
T ss_pred -------------------------------CCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHH--H
T ss_conf -------------------------------7607998422430034341386212266776373133026855323--6
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHH-
Q ss_conf 4554443311-784000013037826213453000012344333664113675788788871-7876655443102567-
Q gi|254780445|r 602 QHSLLESCAT-RGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQT- 678 (963)
Q Consensus 602 ~s~ll~~~~~-~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~- 678 (963)
T Consensus 268 H~i~wpamL~~~~~~~p~~v~~hg~~~-~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~r 346 (644)
T PRK12267 268 HAIYWPIMLMALDLPLPKHLFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVER 346 (644)
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCEEE-CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 688999999976999864451044187-1786005536842237999875594043646444488787777899999999
Q ss_pred -HHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf -776400000110000012-244445673101112788875436899999988987654012266889987863024001
Q gi|254780445|r 679 -NIDTYRKLRNTIRWMLGM-LAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFY 756 (963)
Q Consensus 679 -~~~~~~kl~Nt~rf~l~~-l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Y 756 (963)
T Consensus 347 ~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~--~~~N~Y 424 (644)
T PRK12267 347 INSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLI--SRANKY 424 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHH
T ss_conf 889988777789999999988751886788877874569999999999999999997126999999999999--999998
Q ss_pred HHCCCHHHCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 010201222789980899999999999---999999997000448999999863886
Q gi|254780445|r 757 FDIRKDSLYCDSPSSLKRLSSIAVIRI---LCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 757 ld~~Kdrly~~~~~s~~R~s~~~~L~~---il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
T Consensus 425 i~~~~P--W~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~ 479 (644)
T PRK12267 425 IDETAP--WVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLE 479 (644)
T ss_pred HHHCCC--HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 885788--7663686629999999999999999999970683657999999981999