HHsearch alignment for GI: 254780445 and conserved domain: PRK12268
>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=690.33 Aligned_cols=494 Identities=24% Similarity=0.369 Sum_probs=365.4
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 848996282255889762157785668-7899876708982678888244420899999998765599833489999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILK-DVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~k-Di~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~----g-----~~p~---- 69 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKE----G-----VSPQ---- 69 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC----C-----CCHH----
T ss_conf 51898479988889855231114198999999999837998797584064749999999985----9-----9999----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
T Consensus 70 ---e~~~~~~~~~~~~~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G-- 142 (558)
T PRK12268 70 ---ELADKYHEEHKEDFEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVEG-- 142 (558)
T ss_pred ---HHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCC--
T ss_conf ---99999999999999981983776--86689889999999999999988993301353436841123131233154--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
T Consensus 143 ----------------------------~cP------------------------------------------------- 145 (558)
T PRK12268 143 ----------------------------TCP------------------------------------------------- 145 (558)
T ss_pred ----------------------------CCC-------------------------------------------------
T ss_conf ----------------------------067-------------------------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
T Consensus 146 --------------------------------------------------------~c~~~~~~-----Gd--~c----- 157 (558)
T PRK12268 146 --------------------------------------------------------YCGYEKAR-----GD--QC----- 157 (558)
T ss_pred --------------------------------------------------------CCCCCCCC-----CC--HH-----
T ss_conf --------------------------------------------------------76874356-----73--25-----
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
T Consensus 158 ------e~-----------cg~~-~~-------~~d-----l------i--------~p~~~~~g~~~e~~~~~~~f~~l 193 (558)
T PRK12268 158 ------DN-----------CGAL-LD-------PTD-----L------I--------NPRSKISGSTPEFRETEHFFLDL 193 (558)
T ss_pred ------HH-----------CCCC-CC-------HHH-----H------C--------CCCCCCCCCCCEEEECCCEEECC
T ss_conf ------32-----------4764-78-------577-----2------4--------88567789944477345302141
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHH
Q ss_conf 224554236899998752000002444343202443-0432000011234567225898258847325211244421222
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMI-ENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFK 531 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i-~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~ 531 (963)
T Consensus 194 ~~-------~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~D~~ISR~~~WGipiP~~~~~~~~iy-------------- 252 (558)
T PRK12268 194 PA-------FQEALRKWIESGTDWPPNVLNFTLNWLKEGLKPRAITRDLPWGIPIPFEGAEGKVFY-------------- 252 (558)
T ss_pred HH-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEE--------------
T ss_conf 87-------789999998538877889999999998633756545553878657885556896798--------------
Q ss_pred HCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHH-
Q ss_conf 118874335640111468878875545664210000333545433222223334431----002554442111245544-
Q gi|254780445|r 532 DQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPAD----VYLEGSDQHRGWFQHSLL- 606 (963)
Q Consensus 532 ~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~~~~~~~~PaD----~~~eG~Dq~RgWF~s~ll- 606 (963)
T Consensus 253 -----VW~Da~~~y-is---~~~~~~~~~~~~---------------~~~~~~W~~~~~~~~~f~GkDii~--FH~v~wp 306 (558)
T PRK12268 253 -----VWFDAPIGY-IS---ATKEWAKRKGDP---------------EAWKEFWLDSDTKYYYFIGKDNIP--FHSVIWP 306 (558)
T ss_pred -----EECCCCCCH-HH---HHHHHHHCCCCH---------------HHHHHHCCCCCCEEEEECCCCCCH--HHHHHHH
T ss_conf -----865787220-34---336545416985---------------679872789984277643666543--4787999
Q ss_pred ---HHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHHH--H
Q ss_conf ---43311784000013037826213453000012344333664113675788788871-78766554431025677--7
Q gi|254780445|r 607 ---ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQTN--I 680 (963)
Q Consensus 607 ---~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~~--~ 680 (963)
T Consensus 307 a~l~a~~~~~~lP-~~i~~~g~~~~-~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~ 384 (558)
T PRK12268 307 AMLLGSGEPYKLP-TAIVSSEYLTY-EGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNS 384 (558)
T ss_pred HHHHHCCCCCCCC-CEEEEEEEEEE-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9997337987788-77877556874-684114557887798999987490777899885488888888799999999999
Q ss_pred HHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 6400000110000012-244445673101112788875436899999988987654012266889987863024001010
Q gi|254780445|r 681 DTYRKLRNTIRWMLGM-LAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDI 759 (963)
Q Consensus 681 ~~~~kl~Nt~rf~l~~-l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~ 759 (963)
T Consensus 385 dL~~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~--~~~N~y~~~ 462 (558)
T PRK12268 385 ELADKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELA--RLANKYLNE 462 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 999999999999999999865897898767985659999999999999999997517999999999999--999999983
Q ss_pred CCHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 20122278998089-999999999999999999700044899999986388
Q gi|254780445|r 760 RKDSLYCDSPSSLK-RLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP 809 (963)
Q Consensus 760 ~Kdrly~~~~~s~~-R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~ 809 (963)
T Consensus 463 ~~P--W~l~k~d~~~~~~vl~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~ 511 (558)
T PRK12268 463 KAP--WKLAKTDPERAAAVLYTALNLVKLLAILLYPFLPFSAEKIWEMLGL 511 (558)
T ss_pred CCC--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
T ss_conf 798--5431689999999999999999999999867403999999998499