HHsearch alignment for GI: 254780445 and conserved domain: cd00806
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=96.13 E-value=0.0014 Score=42.80 Aligned_cols=55 Identities=35% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH-----CCC---CCEEEEECCCC-CEECCCC--CCHHCCCCCC-C
Q ss_conf 344310025544421112455444331-----178---40000130378-2621345--3000012344-3
Q gi|254780445|r 584 AWPADVYLEGSDQHRGWFQHSLLESCA-----TRG---STPFTSLITHG-FSVDENG--EKMSKSKGNV-V 642 (963)
Q Consensus 584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~-----~~~---~~Pfk~v~~hG-~vld~~G--~KMSKS~GNv-i 642 (963)
T Consensus 136 ~~~~d~vp~G~DQ~---~h~~laRdia~k~n~~~~~~~~~P-~~~~~~~~~i~~l~~g~~KMSKS~~ns~I 202 (282)
T cd00806 136 LYQADLVPVGEDQD---PHLELTRDIARRFNKLYGEIFPKP-EALISKGARIPSLTGPSKKMSKSDPNTII 202 (282)
T ss_pred HHCCCCCCCCHHHH---HHHHHHHHHHHHHHHHCCCCCCCC-HHHCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 62565052220479---999999999999865506534664-11015555166788976755568999744