HHsearch alignment for GI: 254780445 and conserved domain: cd07957
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.20 E-value=2e-10 Score=90.29 Aligned_cols=101 Identities=22% Similarity=0.331 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHH
Q ss_conf 56731011127888754368999999889876540122668899878630240010102012227899808999999999
Q gi|254780445|r 702 GNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVI 781 (963)
Q Consensus 702 ~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L 781 (963)
T Consensus 26 ~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~N~y~~~~~P--W~l~K~~-~~~~~~~vl 100 (129)
T cd07957 26 GVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELAR--AANKYIDETAP--WKLAKEE-DPERLATVL 100 (129)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCC--HHHHHCC-HHHHHHHHH
T ss_conf 979998777641399999999999999999985249999999999999--99999996587--9888230-299999999
Q ss_pred H---HHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 9---9999999997000448999999863
Q gi|254780445|r 782 R---ILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 782 ~---~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
T Consensus 101 ~~~l~~~~~l~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 101 YVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99999999999999757018999999719