HHsearch alignment for GI: 254780445 and conserved domain: cd07958
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.75 E-value=6.1e-18 Score=142.37 Aligned_cols=117 Identities=19% Similarity=0.319 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102567776400000110000012244445673101112788875436899999988987654012266889987863
Q gi|254780445|r 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNA 750 (963)
Q Consensus 671 ~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 750 (963)
T Consensus 1 Wse~gIeg~~rFl~KlW~l~~~~----~~~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~N- 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTEL----AEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN- 75 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
T ss_conf 98006999999999999999988----8631345565446674499999999999999999985220599999999999-
Q ss_pred HCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 024001010201222789980899999999999999999997000448999999863
Q gi|254780445|r 751 ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 751 dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
T Consensus 76 ~l~~~-----~-----~~-~----~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117)
T cd07958 76 ALYKY-----K-----KK-D----AQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHHH-----H-----CC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99884-----6-----14-4----114999999999999998842479999998539