HHsearch alignment for GI: 254780445 and conserved domain: cd07960
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=5.2e-43 Score=315.93 Aligned_cols=176 Identities=43% Similarity=0.738 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4310256777640000011000001224444567--31011127888754368999999889876540122668899878
Q gi|254780445|r 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNE--PSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748 (963)
Q Consensus 671 ~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~--~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~ 748 (963)
T Consensus 1 is~~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98899999999999999999999986379994334589222879899999999999999999998389999999999994
Q ss_pred HHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCCEEECCCCCCCHHH
Q ss_conf 63024001010201222789980899999999999999999997000448999999863886--7734533588998356
Q gi|254780445|r 749 NAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFPIIPLEW 826 (963)
Q Consensus 749 ~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~--~~SI~~~~wP~~~~~~ 826 (963)
T Consensus 81 ~~~ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~~~~~~ 160 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEW 160 (180)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
T ss_conf 02103599999779761588883899999999999999989874400045399999875668999975714899998010
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 89899999999999999999
Q gi|254780445|r 827 QNACLSKKWGKILQLRKVVT 846 (963)
Q Consensus 827 ~d~~le~~~~~l~~ir~~V~ 846 (963)
T Consensus 161 ~d~~le~~~~~l~~ir~~v~ 180 (180)
T cd07960 161 KDEELEEKWEKLLALRDEVN 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999998759