HHsearch alignment for GI: 254780445 and conserved domain: pfam09334
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=100.00 E-value=0 Score=566.29 Aligned_cols=368 Identities=25% Similarity=0.392 Sum_probs=276.9
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf 89962822558897621577856687899876708982678888244420899999998765599833489999999999
Q gi|254780445|r 56 FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACR 135 (963)
Q Consensus 56 f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~ 135 (963)
T Consensus 1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~----g~-----~~-------~ 64 (388)
T pfam09334 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE----GV-----TP-------Q 64 (388)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHC----CC-----CH-------H
T ss_conf 98937898888860022418899999999999956997071386485379999999984----99-----99-------9
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEEC
Q ss_conf 99999999999999970607763698115776798999999999998796110343022057435736500210132105
Q gi|254780445|r 136 DSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215 (963)
Q Consensus 136 ~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~ 215 (963)
T Consensus 65 e~~~~y~~~~~~~~~~lgi~--~D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g---~c 139 (388)
T pfam09334 65 ELVDRYHEEFKELFKKFNIS--FDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVEG---TC 139 (388)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCC---CC
T ss_conf 99999999999999983996--78786579846899999998751406815532411223666666665333075---45
Q ss_pred CEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCC
Q ss_conf 77999833037531122001100000057886544532277674589983066531111237435512111888887609
Q gi|254780445|r 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTN 295 (963)
Q Consensus 216 ~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 295 (963)
T Consensus 140 -------------------------------------------------------------------------------- 139 (388)
T pfam09334 140 -------------------------------------------------------------------------------- 139 (388)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEE
Q ss_conf 85178410011111285754313786651255114432233224454056405789889899876052122100220343
Q gi|254780445|r 296 VKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVP 375 (963)
Q Consensus 296 ~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~ 375 (963)
T Consensus 140 ---------------------p-----------~~~--------------~~~~~~~~~--------------------- 152 (388)
T pfam09334 140 ---------------------P-----------YCG--------------SEDARGDQC--------------------- 152 (388)
T ss_pred ---------------------C-----------CCC--------------CCCCCCCHH---------------------
T ss_conf ---------------------7-----------557--------------501366410---------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 02344551024310017863211355444567545235664798210000001221132101320333310236630224
Q gi|254780445|r 376 SPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKK 455 (963)
Q Consensus 376 ~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~ 455 (963)
T Consensus 153 ----------e----~~G~~~---------------------------e~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~- 190 (388)
T pfam09334 153 ----------E----VCGRPL---------------------------EPTELINPRSAISGSTPELKEEEHYFFRLSK- 190 (388)
T ss_pred ----------H----CCCCCC---------------------------CHHHHCCCCCCCCCCCCEEECCCCHHHHHHH-
T ss_conf ----------0----238827---------------------------8677417644467997544324412330688-
Q ss_pred CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHC
Q ss_conf 5542368999987520000-0244434320244304-3200001123456722589825884732521124442122211
Q gi|254780445|r 456 LGDGSTLRSRALSEVEKIR-FFPSSGKNRLRSMIEN-RPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQ 533 (963)
Q Consensus 456 ~~~~~~~k~~~l~~i~~v~-~~P~~~k~r~~~~i~~-~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~ 533 (963)
T Consensus 191 ------~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~Dw~ISR~~~WG~~iP~---~~~~------------------ 243 (388)
T pfam09334 191 ------FQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGIPVPG---DPGK------------------ 243 (388)
T ss_pred ------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCE------------------
T ss_conf ------9999999995499889889999999998668887644124778750488---8980------------------
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCC-----CCCCCCCCCCCHHHH
Q ss_conf 8874335640111468878875545664210000333545433------22222333443-----100255444211124
Q gi|254780445|r 534 GSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTIL------LGKDPKLAWPA-----DVYLEGSDQHRGWFQ 602 (963)
Q Consensus 534 g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~------~~~~~~~~~Pa-----D~~~eG~Dq~RgWF~ 602 (963)
T Consensus 244 ----------------------------~~~vW~da~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~G~Di~~--fh 293 (388)
T pfam09334 244 ----------------------------VIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIR--FH 293 (388)
T ss_pred ----------------------------EEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC--HH
T ss_conf ----------------------------687723565552000277777817888644367762000106764142--01
Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHHHH
Q ss_conf 554443311-784000013037826213453000012344333664113675788788871-787665544310256777
Q gi|254780445|r 603 HSLLESCAT-RGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQTNI 680 (963)
Q Consensus 603 s~ll~~~~~-~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~~~ 680 (963)
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~g~v~~-~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d~~Fs~~~~~~~~ 372 (388)
T pfam09334 294 AIYWPAMLMAAGLPLPTQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDFVERV 372 (388)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEE-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 789999998389998866787579975-9944478699878889999887828999999953999899989999999998
Q ss_pred H--HHHHHCC-CCC
Q ss_conf 6--4000001-100
Q gi|254780445|r 681 D--TYRKLRN-TIR 691 (963)
Q Consensus 681 ~--~~~kl~N-t~r 691 (963)
T Consensus 373 n~~~~~kl~N~~~r 386 (388)
T pfam09334 373 NSELANDLGNLVNR 386 (388)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 79988877657733