RPSBLAST alignment for GI: 254780445 and conserved domain: TIGR00396

>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. Length = 842
 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 92/468 (19%), Positives = 151/468 (32%), Gaps = 124/468 (26%)

Query: 493 DWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDA-WFSEGSRD----FF 547
           DWL SRQR WG PI   + E G   +     D  +   +    D    S  SR       
Sbjct: 413 DWLFSRQRYWGEPIPIIHCEDGGA-VPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNV 471

Query: 548 LGDRASEPWIQSKDILDVWFDS-------ACTHTILLGKDPKLA--W-PADVYLEGSDQ- 596
                 +P ++  D +D +  S                 D + A  W P D+Y+ G++  
Sbjct: 472 TCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHA 531

Query: 597 --H----RGWFQHSLLESC-ATRGSTPFTSLITHG----FSVDENGE------------- 632
             H    R W  H  L          PF  LI  G    F    NG+             
Sbjct: 532 ILHLLYARFW--HKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKA 589

Query: 633 --------------KMSKSKGNVVFPEEIISESGADVLRYW-------AVNSDYHDDQRL 671
                         KMSKSKGN + P+EI+ + GAD LR +       A + +++D    
Sbjct: 590 KDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLE 649

Query: 672 GKNIIQTNIDTYRKLRNTIRWM--LGMLAHDTGNEPSLADMPALEQL-----MLHRLTEL 724
           G                  R++  +  L ++   E           L      L R  ++
Sbjct: 650 GAR----------------RFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRR--DV 691

Query: 725 DQVVREAYDAFN----FKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAV 780
            + +++  +       F   +  +    NA   +     +KD+LY +             
Sbjct: 692 HKFLKKVTEDLEKLESFNTAISAMMILLNALYKA-----KKDALYLEYLK--------GF 738

Query: 781 IRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKI-L 839
           + +L        +P  P  AEE W  L  E   +    +P +        L +    I L
Sbjct: 739 LTVL--------SPFAPHLAEELWEKLGSEPFIIKQAKWPKV----DETALVEDKVTIVL 786

Query: 840 QLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEI 887
           Q+     +   +        +  E    L   D  +   +E + + ++
Sbjct: 787 QVNGKFKAKKTVP-----KDADEEQVEELAKQDPEVKKYLENKTIKKV 829