RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (963 letters) >gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 933 Score = 1002 bits (2591), Expect = 0.0 Identities = 391/966 (40%), Positives = 552/966 (57%), Gaps = 51/966 (5%) Query: 8 NYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRE-SAVGRKNFTLHDGPPYAN 66 +Y TL LP+TDFPMRA LP+KE +++ +W++ +++KIRE G+ F LHDGPPYAN Sbjct: 2 DYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYAN 61 Query: 67 GHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIP 126 G+IHIGHALNKILKD+IVR M+ ++ +VPGWDCHGLPIE KVE + K + Sbjct: 62 GNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFG 121 Query: 127 VNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQI 186 V EFR+ CR+ A V Q ++F+RLG+ GD+ENPY TM E + ++ E + Sbjct: 122 VEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLL 181 Query: 187 YRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTI 246 YRG KP+ WS +T LAEAE+EY DV SI V FPVK + +VIWTTTPWT+ Sbjct: 182 YRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDE-NAYLVIWTTTPWTL 240 Query: 247 PGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVC-DVK 305 P N AIA + Y L +V G+KLI++K L +S+A + V+ V K Sbjct: 241 PANLAIAVHPDLDYVLVEV----------NGEKLILAKALVESVAKKAGVEDYEVLETFK 290 Query: 306 AEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDIL 365 +L HP Y + P+I ++V D GTG VH AP HG ED+ + Sbjct: 291 GSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYG--- 347 Query: 366 LNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSI 425 ++V +PVD G YT EAP + G V D AN+ +I L +L Sbjct: 348 -----LLEVLNPVDDNGRYTEEAPKYEGLFVKD-------ANKKIIEDLKEKGNLLKSEK 395 Query: 426 VKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLR 485 ++HSYPH WR+K P+I+R T QWF+ +DK LR + L E+ K+ + P GKNR Sbjct: 396 IEHSYPHCWRTKTPLIYRATPQWFVSVDK-------LRDKMLKEINKVNWVPDWGKNRFG 448 Query: 486 SMIENRPDWLLSRQRNWGVPICFFYNEK-GEILL-DKAINDRIIKTFKDQGSDAWFSEGS 543 +M+ENRPDW +SRQR WGVPI +Y ++ GEIL+ + + + + + +++G D W Sbjct: 449 NMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDI 508 Query: 544 RDFFLGD-RASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWP---ADVYLEGSDQHRG 599 + + + + D+LDVWFDS T +L L +P AD YLEGSDQ RG Sbjct: 509 DELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRG 568 Query: 600 WFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW 659 WF SLL S A G P+ +++THGF +DE G KMSKS GNVV P+++I + GAD+LR W Sbjct: 569 WFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLW 628 Query: 660 AVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLA--DMPALEQLM 717 +SDY +D R I++ + YRK+RNT R++LG L + ++ ++ L++ + Sbjct: 629 VASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWI 688 Query: 718 LHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSS 777 L RL L + VREAY+ ++F +VVR L NF + +LS++Y DI KD LY ++ S R ++ Sbjct: 689 LSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAA 748 Query: 778 IAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFP--IIPLEWQNACLSK 833 + + + L+ +APILPFTAEE W +L E SVHLE +P L A L+ Sbjct: 749 QTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAALAA 808 Query: 834 KWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEICITSDI 893 +W +L+LR V ALE R K IGSSL +Y DS L+ + NL ++ ITS + Sbjct: 809 RWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTEDSELLYKL-KPNLGKVLITSAV 867 Query: 894 TIVH---SNGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAA 950 + + +A L D V + KAEG+KC R W ++G + + R Sbjct: 868 EVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVR 927 Query: 951 VLHELG 956 + E+ Sbjct: 928 RIQEMR 933 >gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 937 Score = 646 bits (1667), Expect = 0.0 Identities = 317/958 (33%), Positives = 468/958 (48%), Gaps = 82/958 (8%) Query: 9 YSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGH 68 YS T +LP+T + + ++I Q + + S R F L D ANG+ Sbjct: 17 YSITSHLPKT--LVHFNSTGRIGQVIEVIQPPEILSS-QLSDQQRVEFELKD----ANGN 69 Query: 69 IHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVN 128 +H+GHALNKILKD+I R + +A +VPGWDCHGLPIE L + + Sbjct: 70 LHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG--SRTPL 127 Query: 129 EFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYR 188 E R R A +K Q + F+R G+ D+ENPY T + EA K+ E +YR Sbjct: 128 EIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYR 187 Query: 189 GIKPIMWSIAEQTTLAEAEIEYHDVD-SDSILVGFPV--KSSADYLIKSQI-----VIWT 240 KP+ WS + +T LAE+E+EY+D S S F + SS+ + S+I ++WT Sbjct: 188 SFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWT 247 Query: 241 TTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIAL 300 TTPWT+P N AI+ +S QY L T +++ L + ++ K + Sbjct: 248 TTPWTLPSNNAISVNSAIQYSLVQF------DNNPTSTFYLVASKLLEEFEKSSDRKCKI 301 Query: 301 VCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNE 360 V VK +L HPL +P+++ +V + GTG VH AP+HG ED+ Sbjct: 302 VGTVKGANLIGRRYKHPLHN---ELGLPILEGPHVTDTVGTGLVHTAPAHGFEDY----- 353 Query: 361 AKDILLNRSVDIKVPSPVDGRGFYTTEA-PGFSGARVLDDAGEKGNANEVVIAALINACA 419 L+ S ++V S VD RG YT EA G VL + ++V+ L + Sbjct: 354 ----LVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEG------QKIVLRLLNHD-- 401 Query: 420 ILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSS 479 I++ S HSYP+ WR+KKP+I R + QWF+ +++ ++ RA ++ ++ P Sbjct: 402 IVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEE-------IKKRASMALDDVKVAPGD 454 Query: 480 GKNRLRSMIENRPDWLLSRQRNWGVPICFFYN-EKGEILLDKAINDRIIKTFKDQGSDAW 538 RL+ ++ RP W +SRQR WGVPI Y+ G L + I T + +GSD W Sbjct: 455 SDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVW 514 Query: 539 FSEGSRDFF-------LGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYL 591 + + + D ASE + + DI+DVWFDS + + +L + + ADVYL Sbjct: 515 WEIDVEELLPEEEVREIPDIASE-YKKGTDIMDVWFDSGSSWSAVLDNERE--HVADVYL 571 Query: 592 EGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651 EG DQ RGWFQ SLL S A + P+ +I HGF++DENG KMSKS GNVV P + S Sbjct: 572 EGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGS 631 Query: 652 ------GADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEP 705 GAD LR+W S+ + ++G I+ + K RNT R++LG L G + Sbjct: 632 LKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQV 691 Query: 706 SL--ADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763 D+ ++Q ML +L + + + E Y+ + F++VV L F LS+FYFDI KD Sbjct: 692 KFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDR 751 Query: 764 LYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIP 823 LYCD S R S+ + L +L I+PILP AEE W L + + + Sbjct: 752 LYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLH 811 Query: 824 LEWQN--ACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEG 881 LSK +L++R + S L + GS L+ P + + I E Sbjct: 812 SGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYH---TIRIYESE- 867 Query: 882 ENLAEICITSDITIVHSNGPTDAFRLSDVP-NVSVQCLK--AEGKKCARSWRVTKDVG 936 L E+ S + I+H N ++ L + +C K A +C R W + K Sbjct: 868 --LPELLNVSQV-ILHENRDENSVELVESRLRYCERCRKHRATFSRCVRCWDLRKQDP 922 >gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 Score = 565 bits (1458), Expect = e-161 Identities = 235/643 (36%), Positives = 345/643 (53%), Gaps = 51/643 (7%) Query: 37 WQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACF 96 W + F K E+ G+ +FT+HDGPP A G +HIGHALNK LKD+++R +M+ F+ + Sbjct: 6 WDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLW 65 Query: 97 VPGWDCHGLPIEWKVENEYLAKGKK-KDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155 VPGWD HGLP E KVE + KGKK + + +FR+ CR+ + +F+RLG+ Sbjct: 66 VPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVS 125 Query: 156 GDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215 GD++ Y T+ EA + +++ + IYRG KP+ WS A T L+EAE+EY DV Sbjct: 126 GDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKG 185 Query: 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFD 275 SI V FP+ + +VIWTTTPWT+PGN A+A + Y V Sbjct: 186 PSIHVAFPLADGKG----ASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRV---------- 231 Query: 276 TGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYV 335 TG+ I+++ L +S+ + ++ D + ++L HP +P+I +YV Sbjct: 232 TGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF----VNREIPIIADDYV 287 Query: 336 ANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGAR 395 + GTG VH+AP+HG +D+ +++ +PVD G Y EAP F G + Sbjct: 288 DMEFGTGAVHIAPAHGEDDYEVGKRH---------NLEFINPVDDDGTYNEEAPEFQGLK 338 Query: 396 VLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKK 455 A + ++ L +L ++HSYPH WRS PII+R T QWF+ M Sbjct: 339 RFK-------ARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN- 390 Query: 456 LGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEK-G 514 L AL VEK++F P G+ R + +EN DW +SRQR WG PI +Y++ G Sbjct: 391 ------LAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTG 444 Query: 515 EILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHT 574 E+ + ++ + + +++G +AW ++D LG A Q +D+LD WF S Sbjct: 445 EVYVRGSLKELVAGREEEEGIEAWLHRDAKDL-LGKGAGT-LEQDEDVLDTWFSSGSWPF 502 Query: 575 ILLG------KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVD 628 LG + K +PAD+ LEGSDQ RGWF ++ A GS P+ +++ HG D Sbjct: 503 STLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRD 562 Query: 629 ENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRL 671 E G KMSKS GNV+ P ++I + GAD LR W +SDY D Sbjct: 563 EQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASSDYGRDINF 605 >gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 877 Score = 363 bits (932), Expect = e-100 Identities = 196/822 (23%), Positives = 332/822 (40%), Gaps = 112/822 (13%) Query: 30 ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89 E + W++ F + F++ PP G +H+GHALN L+D++ R +M Sbjct: 11 EEKWYKKWEESGYFKPDPNED--KPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRM 68 Query: 90 RNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEF 149 R +N + PG D G+ + VE + A+G + D+ EF + C + ++ Sbjct: 69 RGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQL 128 Query: 150 QRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE 209 +RLG+ D+ TM + +++ E IYRG + + W +T +++ E+E Sbjct: 129 RRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVE 188 Query: 210 YHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCS 269 Y +V+ + +P+ Y +V+ TT P T+ G+ A+A + Sbjct: 189 YKEVEGKLYYIKYPLADGDGY-----LVVATTRPETLLGDTAVAVHPD------------ 231 Query: 270 GQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPL 329 D + + L PL +P+ Sbjct: 232 ---------------------------------DERYKHLVGKEVILPL----VGREIPI 254 Query: 330 IDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAP 389 I EYV + GTG V + P+H D+ ++ + + +D G EA Sbjct: 255 IADEYVDPEFGTGAVKITPAHDFNDYEVGKRH---------NLPLINIIDEDGRINEEAA 305 Query: 390 G-FSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQW 448 G F+G + A + ++ L ++ KHS H R PI + QW Sbjct: 306 GEFAGLDRFE-------ARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQW 358 Query: 449 FLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506 F+ + L +AL V+ KI+F P + R +EN DW +SRQ WG I Sbjct: 359 FVKVL-------ELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRI 411 Query: 507 CFFY-NEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDV 565 +Y E G +++ + + ++ E Q +D+LD Sbjct: 412 PVWYCKECGNVVVAE--EEPEDPAAAEKCPK-----------------EELEQDEDVLDT 452 Query: 566 WFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSL 620 WF S+ LG D K +P D+ + G D W ++ G PF + Sbjct: 453 WFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDV 512 Query: 621 ITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYH-DDQRLGKNIIQTN 679 HG DE G KMSKSKGNV+ P ++I + GAD LR+ + D + ++ Sbjct: 513 YIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY 572 Query: 680 IDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKE 739 + KL N R++L L ++ L + ++ +L RL E + V EA D + F E Sbjct: 573 RNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDE 632 Query: 740 VVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFT 799 R L F + +Y ++ K LY + ++ A + + L+ + P +PF Sbjct: 633 AARALYEFIWNDFCDWYLELAKPRLYGGEEE---KRAARATLYYVLDTLLRLLHPFMPFI 689 Query: 800 AEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQL 841 EE W L S+HL +P + E + K++ + ++ Sbjct: 690 TEEIWQKLPGTE-SIHLASWPEVDEELIDEEAEKEFELLKEI 730 >gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 1070 Score = 322 bits (827), Expect = 3e-88 Identities = 251/962 (26%), Positives = 419/962 (43%), Gaps = 107/962 (11%) Query: 21 PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILK 80 P P++E +++ +W++I F + + GR FT +DGPP+A G H GH L +K Sbjct: 5 PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIK 64 Query: 81 DVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDI---PVNEFRQACRDS 137 D++ R + GWD HGLP+E++++ + G +DD+ ++++ CR Sbjct: 65 DIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITG--RDDVMKMGIDKYNNECRKI 122 Query: 138 ASAWVKIQSKEFQRLGIVGDFENPYTTMT---RESEAQIASELLKIAESDQIYRGIKPIM 194 + K +RLG DF+N Y T+ ES + EL E +YRG K + Sbjct: 123 VMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH---EKGLVYRGFKVMP 179 Query: 195 WSIAEQTTLA--EAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAI 252 +S A T L+ EA+ Y DV ++ V FP+ +V WTTTPWT+P N A+ Sbjct: 180 YSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLAL 235 Query: 253 AFSSNHQYG-LYDVISCSGQHTFDTGKKLIISKN-LAQSIANQTNVKIALVCDVKAEDLS 310 + + QY + D TGKK I+ ++ L + N N ++ + L Sbjct: 236 CVNPDFQYVKIKDK---------TTGKKYILMESRLGELYKNPKNDNYEILERFQGAALV 286 Query: 311 KTMCSHPLKKLGYTFS---VPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLN 367 TF ++ +YV D GTG VH AP+ G ED+ A I Sbjct: 287 GLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGII--- 343 Query: 368 RSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVK 427 D P PVD G +T+E F+G V D A++++I +L + ++ S + Sbjct: 344 -RKDSLPPCPVDESGLFTSEVTDFAGQYVKD-------ADKLIIRSLKASGRLVKASQIT 395 Query: 428 HSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKN-RLRS 486 HSYP WRS P+I+R WF+ + + + L K + P + K R + Sbjct: 396 HSYPFCWRSDTPLIYRAVPSWFVRVK-------NIVDQLLRNNMKTHWVPQNIKEKRFAN 448 Query: 487 MIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDF 546 ++N DW +SR R WG PI + ++ E + I + ++ S ++ R+ Sbjct: 449 WLKNARDWNISRNRYWGTPIPLWVSDDYE---EVVCIGSIKEL--EELSGVKITDLHRES 503 Query: 547 FLGDRASEPWIQSK-------DILDVWFDS-----ACTHTILLGKDP-KLAWPADVYLEG 593 D + P + K ++ D WF+S A H K+ + +PAD EG Sbjct: 504 I--DHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEG 561 Query: 594 SDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGA 653 DQ RGWF L+ S A G PF ++I +G + E+G+KMSK N P II++ GA Sbjct: 562 LDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGA 621 Query: 654 DVLRYWAVNSDYHDDQRLG----------KNIIQTNIDTYRKLRNTIRWMLGMLAHDTGN 703 D LR + +NS + L K+++ ++YR L + D Sbjct: 622 DALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVF 681 Query: 704 EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763 + S+ +++ +L L VRE D + VV +L F + EL+++Y + Sbjct: 682 DDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFID-ELTNWYIRFNRRR 740 Query: 764 LYCDS--PSSLKRLSSI-AVIRILCRHLIIWIAPILPFTAEEAWLSLNP---------EA 811 L ++ L+ + V+ L R + AP PF E + +L Sbjct: 741 LKGENGEHDCHNALNVLFEVLFTLVRVM----APFTPFFTEYIYQNLKKYIPIDKNEKSE 796 Query: 812 VSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEI-ERKAKHIGSSLETAPTLYI 870 SVH +P E + + + ++ +++ ++ A I ER + + L+ + Sbjct: 797 RSVHFLSYPTPKEELIDETVER---RVERMQSIIDLARNIRERNTISLKTPLKEL-IVIH 852 Query: 871 TDSSLISNIEG--ENLAEICITSDITIVHSNGPTDAFRLSDVPNVSV--QCLKAEGKKCA 926 +D + +I+ + E ++ S+ L P+ V + LK + KK Sbjct: 853 SDEEYLEDIKSLERYILEELNVREVVFT-SDEEKYGVVLKAEPDFPVLGKKLKKDMKKVK 911 Query: 927 RS 928 ++ Sbjct: 912 KA 913 >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 Score = 230 bits (589), Expect = 1e-60 Identities = 90/247 (36%), Positives = 121/247 (48%), Gaps = 54/247 (21%) Query: 435 RSKK----PIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIEN 490 R K P+I+R T QWF+ + K ++ R L +K+ + P KNR + +EN Sbjct: 136 RGYKVVPWPLIYRATPQWFIRVTK-------IKDRLLEANDKVNWIPEWVKNRFGNWLEN 188 Query: 491 RPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGD 550 R DW +SRQR WG PI +Y E +L + Sbjct: 189 RRDWCISRQRYWGTPIPVWYCEDCGEVLVR------------------------------ 218 Query: 551 RASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSL 605 + D+LDVWFDS L +D + +PAD LEGSDQ RGWF L Sbjct: 219 -------RVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLL 271 Query: 606 LESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSD- 664 L S A G P+ ++I HGF +DE+G KMSKS GN V P+E++ + GAD LR W +SD Sbjct: 272 LLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDV 331 Query: 665 YHDDQRL 671 Y +D R Sbjct: 332 YAEDLRF 338 Score = 204 bits (520), Expect = 2e-52 Identities = 68/141 (48%), Positives = 85/141 (60%), Gaps = 1/141 (0%) Query: 56 FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEY 115 F HDGPPYANG H GHALNKILKD+I R M+ + PGWDCHGLPIE KVE E Sbjct: 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62 Query: 116 LAKGKK-KDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIA 174 GKK + + + EF CR+ A +V Q ++FQRLG+ D+ENPY TM E + Sbjct: 63 GISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVW 122 Query: 175 SELLKIAESDQIYRGIKPIMW 195 ++ E +YRG K + W Sbjct: 123 WVFKQLHEKGLLYRGYKVVPW 143 >gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 180 Score = 216 bits (552), Expect = 3e-56 Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 6/181 (3%) Query: 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHD---TGNEPSLADMPALEQLMLHRLTELDQV 727 + I++ + YRK+RNT R++LG L +D + ++ L++ LHRL EL + Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNL-NDFDPAKDAVPYEELLELDRYALHRLNELIKE 59 Query: 728 VREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRH 787 VREAY+ + F +V + L NF +LS+FY DI KD LYCD+ SL+R S+ V+ + Sbjct: 60 VREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDA 119 Query: 788 LIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVV 845 L+ +APILPFTAEE W L E SV LE +P +P EW++ L +KW K+L LR V Sbjct: 120 LLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEWKDEELEEKWEKLLALRDEV 179 Query: 846 T 846 Sbjct: 180 N 180 >gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 995 Score = 216 bits (551), Expect = 3e-56 Identities = 212/951 (22%), Positives = 332/951 (34%), Gaps = 177/951 (18%) Query: 30 ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89 ES +W+K F K F + PP G +HIGHAL ++D + R +M Sbjct: 52 ESAWYKWWEKQGFF-KPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRM 110 Query: 90 RNFNACFVPGWDCHGLPIEWKVENEYLAK--GKKKDDIPVNEFRQACRDSASAWVKIQSK 147 + +VPG D G+ + VE + LA+ GK + D+ EF + + + Sbjct: 111 HGYQVLWVPGTDHAGIATQVVVE-KQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYN 169 Query: 148 EFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAE 207 + +RLG D++ TM + + +++ E IYR + + W A ++ +++ E Sbjct: 170 QLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIE 229 Query: 208 IEYHDVDSDSIL--------VGFPVKSSADYLI---KSQIVIWTTTPWTIPGNRAIAFSS 256 +E ++ ++L V F V S Y + +IV+ TT P TI G+ A+A Sbjct: 230 VESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAV-- 287 Query: 257 NHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSH 316 H D K + K H Sbjct: 288 ---------------HPDDDRYKHLHGKF----------------------------VKH 304 Query: 317 PLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPS 376 P +P+I V + GTG V + P+H D+ + L ++ Sbjct: 305 PFTGR----KLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGK--RHNLEFINI------ 352 Query: 377 PVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAAL--INACAILNRSIVKHSY--PH 432 G F G + + A E V+ L + L H P Sbjct: 353 -FTDDGLLNNVCGEFKGMKRFE-------AREKVVEKLKELG----LYVGKENHPMVLPI 400 Query: 433 SWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIEN 490 RS I QWF+ + + +AL VE K+ P + +EN Sbjct: 401 CSRSGDVIEPLLKPQWFVSCKE-------MAKKALKAVESGKLEILPEFHEKEWYRWLEN 453 Query: 491 RPDWLLSRQRNWG--VPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFL 548 DW +SRQ WG +P F G D + R S+ E + + F Sbjct: 454 IRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVAR---------SEEEAREKAAEKF- 503 Query: 549 GDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQH 603 G Q D+LD WF S LG KD K +P + G D W Sbjct: 504 GPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVAR 563 Query: 604 SLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEI---------------- 647 ++ G PF ++ HG D +G KMSKS GNV+ P ++ Sbjct: 564 MVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSG 623 Query: 648 ---------------------ISESGADVLRYWAVNSDYH-DDQRLGKNIIQTNIDTYRK 685 I E G D LR+ + D L ++ K Sbjct: 624 NLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNK 683 Query: 686 LRNTIRWMLGMLAHDTGNEPSLADMPALEQL-----MLHRLTELDQVVREAYDAFNFKEV 740 L N R+ L L PS + + + +L RL E + V E+ +A NF Sbjct: 684 LWNATRFALQRLG--ENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLA 741 Query: 741 VRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLII---WIAPILP 797 L F +L Y + K L+ DS + + R+L R L + P +P Sbjct: 742 TSALYAFWLYDLCDVYLEATKPLLWGDSEA-----LAYEARRVLYRCLDNGLRLLHPFMP 796 Query: 798 FTAEEAWLSL----NPEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSA---LE 850 F EE W L + S+ + +P W+N L + +L + + + S Sbjct: 797 FITEELWQRLPRRKGSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYN 856 Query: 851 IERKAKH---IGSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHS 898 + K + I SS E ++ IS + L I ++ Sbjct: 857 LSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISSPAEEDAQGC 907 >gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 814 Score = 150 bits (380), Expect = 2e-36 Identities = 177/834 (21%), Positives = 283/834 (33%), Gaps = 152/834 (18%) Query: 36 YWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNAC 95 W++ ++F+ +S K + L PY +G +H+GH N + DVI R +M+ +N Sbjct: 17 RWEEAKVFEADEDSDKPEKFYVL-VMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVL 75 Query: 96 FVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155 GWD GLP E K + K+ + LG Sbjct: 76 HPMGWDAFGLPAE-----NAAIKIGTDPAKWTYYNIAYMK-----------KQLKSLGFS 119 Query: 156 GDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215 D+ + T E I + LK+ E YR P+ W + T LA ++ Sbjct: 120 IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWR 179 Query: 216 DSILVG--------FPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVIS 267 V F + AD L+ + T P T+ G + + Y + V+ Sbjct: 180 CGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVD 239 Query: 268 CSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSV 327 G++ I+S + + + + V L + ++P L Sbjct: 240 ---------GEEEIVSIEVFTTRPDTLF-GVTYVVLAPEHPLVGKLVTNPQTPLV----- 284 Query: 328 PLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTE 387 AE+V GTG V P+H +D + +PV+G + Sbjct: 285 ----AEFVDECKGTGVVESVPAHAEKDGVF------------LGGYAINPVNGE-----K 323 Query: 388 APGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQ 447 P + VL + G V+ + + + + K PI + Sbjct: 324 IPVWIANYVLMEYGT-----GAVMGV---------PAHDERDLEFATKYKLPIKKVIMPE 369 Query: 448 WFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENR-----------PDWLL 496 + G+G + S L + K ++R + R DWL Sbjct: 370 GTVGKKVYEGEGVLINSGGLDGL-----DYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLK 424 Query: 497 SRQRNWGVPICFFYNEKGEI-------LLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLG 549 SRQR WG PI + E + L K GS + E L Sbjct: 425 SRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVR---GLGTGSPLPWDEEWVIESLP 481 Query: 550 DRASEP-------WIQSKDILDVWFDSACTHTILLGKDPKLAW-PADVYLEGSDQ----- 596 D + +I S +FD + ++ W P D+Y+ G + Sbjct: 482 DSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHL 541 Query: 597 ------HRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISE 650 H+ F L+ PF LIT G + E GEKMSKSKGNVV PEE + + Sbjct: 542 LYFRFFHKALFDEGLVPK-----DEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK 596 Query: 651 SGADVLR-YWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLAD 709 GAD +R Y + D ++ ++ +++ N ++ L L + E D Sbjct: 597 YGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKED 656 Query: 710 MPALEQLMLHRLTELDQVVREAYDA-FNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDS 768 + +LHR + V E ++A F + L NA +R+ Sbjct: 657 -----RWLLHRTI---KKVTEDFEARQTFNTAIAALMELLNA----LRKYLRRTEG---- 700 Query: 769 PSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPII 822 V+R + +AP P AEE W L E V +P Sbjct: 701 --------DRKVLREALETWVRLLAPFAPHIAEELWEELGNEG-FVSNAPWPEP 745 >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 Score = 143 bits (363), Expect = 2e-34 Identities = 68/239 (28%), Positives = 102/239 (42%), Gaps = 29/239 (12%) Query: 433 SWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIEN 490 RS I QWF+ + L +AL V++ I+F P + R + +EN Sbjct: 156 CSRSGDVIEPLLKPQWFVKV-------KDLAKKALEAVKEGDIKFVPERMEKRYENWLEN 208 Query: 491 RPDWLLSRQRNWGVPICFFY-NEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLG 549 DW +SRQ WG I +Y + G ++ + ++ I K + Sbjct: 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC------------ 256 Query: 550 DRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHS 604 E Q +D+LD WF S+ LG KD K +P + + G D W Sbjct: 257 --GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARM 314 Query: 605 LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNS 663 ++ G PF + HG DE+G KMSKS GNV+ P ++I GAD LR+ ++ Sbjct: 315 IMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASA 373 Score = 118 bits (298), Expect = 8e-27 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKK 121 PP G +H+GHALN ++D+I R +M+ +N + PG D G+ + VE + +GK Sbjct: 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68 Query: 122 KDDIPVNEFRQACRDSASAWVKIQSKE----FQRLGIVGDFENPYTTMTRESEAQIASEL 177 + D+ EF + C + W + + +RLG D+ Y TM + Sbjct: 69 RHDLGREEFLEKCWE----WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 Query: 178 LKIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208 +++ E IYR + + W +T +++ E+ Sbjct: 125 VRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155 >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 Score = 136 bits (344), Expect = 3e-32 Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 56 FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEY 115 F + PPYANG +H+GHAL I+ D I R +MR + F+PGWD HGLPIE K E Sbjct: 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAER-- 59 Query: 116 LAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIAS 175 G+KK I + EFR+ ++ ++F+RLGI D+ + Y T E + Sbjct: 60 -KGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVEL 118 Query: 176 ELLKIAESDQIYRGIKPI 193 ++ E IYRG P+ Sbjct: 119 IFSRLYEKGLIYRGTHPV 136 Score = 129 bits (327), Expect = 3e-30 Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 54/234 (23%) Query: 437 KKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLL 496 + R T QWF M K + + L + + + P KNR+ + +E+ DW + Sbjct: 131 RGTHPVRITEQWFFDMPK-------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAI 183 Query: 497 SRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPW 556 SRQR WG P+ D D WF G Sbjct: 184 SRQRYWGTPL---------------PEDVF---------DVWFDSGI------------- 206 Query: 557 IQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTP 616 + + K ++PAD +L G D RGW + A G P Sbjct: 207 ---------GPLGSL-GYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIP 256 Query: 617 FTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQR 670 +L+ HGF +DE G+KMSKSKGNV+ P +++ + GAD LRY+ + + D Sbjct: 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDI 310 >gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 558 Score = 98.8 bits (246), Expect = 6e-21 Identities = 95/445 (21%), Positives = 157/445 (35%), Gaps = 81/445 (18%) Query: 431 PHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFF--PSSGKNRLRSMI 488 P S R +F + K + + L E F P++ +N + + + Sbjct: 173 PVCVISGATPEVREEEHYFFRLSK-------FQDKLLEWYESNPDFIWPANRRNEVLNFL 225 Query: 489 ENR-PDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDF 546 + D ++R +WG+P+ + + D I I + ++ E + F Sbjct: 226 KEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIG--YISALGE-LAEIGDDEDFKKF 282 Query: 547 FLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLL 606 + D KDI + F H + WPA L + Sbjct: 283 WPADDTELVHFIGKDI--IRF-----HAVY--------WPA--MLMAAGLPL-------- 317 Query: 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW-AVNSDY 665 T + HGF E G+KMSKS+GNVV P+E++ + G D LRY+ A Sbjct: 318 ----------PTRIFAHGFLTLE-GQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPE 366 Query: 666 HDDQRLGKNIIQT--NIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQL--MLHRL 721 D N D KL N LG + A P LE+ +L Sbjct: 367 GSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALA 426 Query: 722 TELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFD------IRKDSLYCDSPSSLKRL 775 E + V EA + + F++ + ++ A ++ Y D + K+ D L + Sbjct: 427 REALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLAKE----DKRERLATV 480 Query: 776 --SSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSK 833 ++ ++R+L I + P +P TAE+ W L E W A Sbjct: 481 LYLALELVRVLA----ILLYPFMPETAEKIWDQLGLE--------EDARNFTWLGARQPL 528 Query: 834 KWGKILQLRKVVTSALEIERKAKHI 858 G L + + +E E + I Sbjct: 529 LPGHKLGPPEPLFPRIEEEAIEELI 553 Score = 68.8 bits (168), Expect = 8e-12 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 20/158 (12%) Query: 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE 112 K + PY NG H+GH + DV R ++R + F+ G D HG IE K E Sbjct: 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAE 63 Query: 113 NEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ 172 E I E + + + F+ L I D + T + Sbjct: 64 KE---------GITPQEL---VDKNH----EEFKELFKALNISFDN---FIRTTSPEHKE 104 Query: 173 IASEL-LKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE 209 + E LK+ E+ IY ++ ++ + L + +E Sbjct: 105 LVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142 >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 Score = 71.9 bits (177), Expect = 7e-13 Identities = 59/234 (25%), Positives = 76/234 (32%), Gaps = 88/234 (37%) Query: 447 QWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506 QWFL K + + + L ++EK+ +P + + I SRQR WG PI Sbjct: 131 QWFL----KYSETEW-KEKLLKDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPI 179 Query: 507 CFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVW 566 PW D ++ Sbjct: 180 ------------------------------------------------PW---TDTMESL 188 Query: 567 FDS-------ACTH------TILLGKDPKLA--W-PADVYLEGSDQ-------HRGWFQH 603 DS H L D + W P D+Y+ G + R F H Sbjct: 189 SDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR--FNH 246 Query: 604 SLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLR 657 L P LI G V GEKMSKSKGNVV P+E I + GAD R Sbjct: 247 KALFDEGLVTDEPPKGLIVQGM-VLLEGEKMSKSKGNVVTPDEAIKKYGADAAR 299 Score = 56.9 bits (138), Expect = 2e-08 Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIE 108 PY +G +H+GH + D+I R +M+ +N F G+D GLP E Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE 54 >gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 876 Score = 71.2 bits (174), Expect = 1e-12 Identities = 87/395 (22%), Positives = 136/395 (34%), Gaps = 86/395 (21%) Query: 493 DWLLSRQRNWGVPICFFYNEKGEI---------LLDKAINDRIIKTFKDQGSDAWFSEGS 543 DWL+SRQR WG PI + + + +ND K +D W + Sbjct: 421 DWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDC 480 Query: 544 RDFFLGDRASEPWIQSKDILDVWFDSACTH---------TILLGKDPKLAW-PADVYLEG 593 R EP + D +D + DS+ + K P DVY+ G Sbjct: 481 ------PRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGG 534 Query: 594 SDQ---HRGW--FQHSLLESC-ATRGSTPFTSLITHG------FSVDENG---------- 631 + H + F L+ + PFT LIT G F E+G Sbjct: 535 KEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQ 594 Query: 632 ---------------------EKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQR 670 EKMSKSK N V P +++ E G D R + + + D Sbjct: 595 VNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPI 654 Query: 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTEL-DQVVR 729 N + + RW L + D + L LT+ D R Sbjct: 655 --------NWNE-SAIPGIKRW-LQRIWALVSQILQARDDGKAKDLKK--LTDGFDAETR 702 Query: 730 EAYDAFNFKEVVRQLT-NFSNA-ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRH 787 + + +NF ++Q+T ++ L++ D+ + + + S R L Sbjct: 703 KLKETYNF--FIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSPEFERALEA- 759 Query: 788 LIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPII 822 L+I +AP P A E W +L + V +P + Sbjct: 760 LVIMLAPFAPHVASELWSALANDLSWVSDVKWPEV 794 Score = 60.0 bits (145), Expect = 3e-09 Identities = 64/383 (16%), Positives = 127/383 (33%), Gaps = 109/383 (28%) Query: 31 SELITYWQK--IRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQ 88 + + +W++ F ++S +K + L PY +G +HIGH + D++ R ++ Sbjct: 33 AMIEKHWKQYLKDGFPFSKDSDKSKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYR 91 Query: 89 MRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW----VKI 144 M+ +N GWD GLP EN + +G ++W + Sbjct: 92 MKGYNVIHPMGWDAFGLP----AENAAIERGV----------------HPASWTINNIAK 131 Query: 145 QSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204 ++ + LGI D++ +T + LK+ E Y+ + W ++T LA Sbjct: 132 MKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLA 191 Query: 205 EAEIEYHDV-------------------------------------------------DS 215 +++ Sbjct: 192 NEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRC 251 Query: 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFD 275 D + FP+ + ++TT P T+ G + + +H D Sbjct: 252 DGAELMFPLLDDGSN--DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------- 299 Query: 276 TGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYV 335 +L + ++ + + +A++ P+ ++P++ A+YV Sbjct: 300 ---------SLKEFLSKSDLPQKGVQLPCQAKN--------PVTGR----AIPVVVADYV 338 Query: 336 ANDCGTGFVHVAPSHGVEDFTAW 358 + GTG V AP H D Sbjct: 339 LDPYGTGAVMGAPGHDQRDKELA 361 >gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 578 Score = 68.9 bits (168), Expect = 6e-12 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 42/296 (14%) Query: 538 WFSEGSRDFFLGDRASE-PW-----IQSKDILDVWFDSACTHTILLGKDPK--------- 582 W G D + ++ W + VWFD+ + ++G K Sbjct: 236 WLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALS 295 Query: 583 LAWPADVYLEGSDQ---HRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKG 639 WPA +++ G D H ++ L+ + G + HG +NG KMSKS G Sbjct: 296 FGWPATLHVIGKDILRFHAVYWPAFLMAA----GLPLPKMIFVHGHWT-KNGMKMSKSLG 350 Query: 640 NVVFPEEIISESGADVLRYWAV-------NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRW 692 NVV P E++ + G D +RY+ + + DY ++ K I N L N + Sbjct: 351 NVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEE----KLIKIVNAHLANTLGNLLNR 406 Query: 693 MLGMLAHDTGNEPSL----ADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748 LG + + E +L + A + ++ + +L +V YD F+ + + + Sbjct: 407 CLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIG 466 Query: 749 NAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLI-IWIAPILPFTAEE 802 NA + R L+ DS S + L+ + I + +I I + P+ P + Sbjct: 467 NA--GNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLR 520 Score = 38.5 bits (89), Expect = 0.010 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 26/149 (17%) Query: 64 YANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKD 123 Y N H+GH + +L D I R +++ F G D HGL I+ + D Sbjct: 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCD 108 Query: 124 DIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ---IASELLKI 180 I S+ F++L YT R ++ + I E Sbjct: 109 RI--------------------SQSFRQLWKDAGIA--YTKFIRTTDPKHEAIVQEFWAR 146 Query: 181 AESD-QIYRGIKPIMWSIAEQTTLAEAEI 208 + IYRG + ++++T E+++ Sbjct: 147 VFKNGDIYRGDYEGWYCVSDETFYPESKV 175 >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 Score = 64.1 bits (157), Expect = 2e-10 Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 61/226 (26%) Query: 441 IFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIENR-PDWLLS 497 +R +F + K + R L +EK +P + +N + S ++ D ++ Sbjct: 133 EWREEEHYFFRLSK-------FQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSIT 185 Query: 498 RQR-NWGVPICFFYNEKGEILLDKAIN--DRIIKTFKDQGSDAWFSEGSRD--FFLGDRA 552 R +WG+P+ + + D I ++ G+ W+ +G + F+G Sbjct: 186 RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIG--- 242 Query: 553 SEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATR 612 KDI + F H I WPA Sbjct: 243 -------KDI--IRF-----HAIY--------WPA-------------MLLGA------- 260 Query: 613 GSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRY 658 G T ++ HG+ E G+KMSKS+GNVV P++++ GAD LRY Sbjct: 261 GLPLPTRIVAHGYLTVE-GKKMSKSRGNVVDPDDLLERYGADALRY 305 Score = 62.5 bits (153), Expect = 6e-10 Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENE 114 PY NG H+GH +L DV R ++R ++ FV G D HG IE K E E Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60 >gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 183 Score = 58.7 bits (143), Expect = 8e-09 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%) Query: 701 TGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIR 760 ++ ++A + L++ +L RL L + V E +A++ VR L F + EL+++Y IR Sbjct: 36 GKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFID-ELTNWY--IR 92 Query: 761 -------KDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAV- 812 + D ++ L V+ L R L +AP PF EE + +L E Sbjct: 93 RNRKRFWGEEGDDDKLAAYATLYE--VLLTLSR-L---MAPFTPFITEEIYQNLRRELGD 146 Query: 813 ---SVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSAL 849 SVHL +P + + L + + +R++V Sbjct: 147 APESVHLLDWPEVDESLIDEELEE---AMELVREIVELGR 183 >gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 464 Score = 56.0 bits (135), Expect = 5e-08 Identities = 23/84 (27%), Positives = 41/84 (48%) Query: 608 SCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHD 667 S A G PF H ++ +GEKMSKS GN + +++ + +VLR + ++S Y Sbjct: 243 SEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRS 302 Query: 668 DQRLGKNIIQTNIDTYRKLRNTIR 691 + +++ +L N +R Sbjct: 303 PLDFSEELLEEAKKALERLYNALR 326 >gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. Length = 117 Score = 53.7 bits (129), Expect = 3e-07 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 674 NIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYD 733 ++ +L + + L + + ++ +L RL E + A + Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNEL-LEEADRELLARLQEFIKRTTNALE 60 Query: 734 AFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIA 793 A + V++L F+N ++Y D K +L + R + +AV+R L +A Sbjct: 61 ALDPTTAVQELFKFTNEL--NWYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLA 114 Query: 794 PIL 796 P Sbjct: 115 PFT 117 >gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135 Score = 53.3 bits (129), Expect = 3e-07 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 680 IDTYRKLRNTI----RWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAF 735 ++ R N + R++L L D E + ++ +L RL + + V EA + + Sbjct: 6 VEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENY 65 Query: 736 NFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795 F E L F + +Y ++ K LY + + ++ A + + ++ + P Sbjct: 66 RFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEE--KKAARATLYYVLETILRLLHPF 123 Query: 796 LPFTAEEAWLSL 807 +PF EE W L Sbjct: 124 MPFITEELWQRL 135 >gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 1080 Score = 46.9 bits (111), Expect = 3e-05 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 28/192 (14%) Query: 630 NGEKMSKSKGNVVFPEEIISESGADVLRY-WAVNSDYHDDQRLGKNIIQTNIDTY-RKLR 687 N EKMSKS GN + E+ I + GAD R A D +D N ++ N + +L Sbjct: 707 NSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVED----ANFVEANANAAILRLY 762 Query: 688 NTIRWMLGMLAHDTGNEPSLADMPA---LEQLMLHRLTELDQVVREAYDAFNFKEVVRQL 744 + W+ M N SL PA +++ + + L AY+ FK+ ++ Sbjct: 763 TYVEWIEEMCE----NRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALK-- 816 Query: 745 TNFSNAELSSFY-FDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEA 803 FY +D + R ++ + +API P AE Sbjct: 817 --------YGFYDLQAARDMYRELCGEGMHR----DLVFRFIETQTLLLAPICPHLAEYI 864 Query: 804 WLSLNPEAVSVH 815 W ++ + SV+ Sbjct: 865 WRTVLKKNFSVN 876 Score = 38.5 bits (89), Expect = 0.010 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 23 RAKLPQKESELITYWQKIRLF--DKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILK 80 R L + E + W ++F D E + F + PY NG +H+GHA + Sbjct: 11 RDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKV 70 Query: 81 DVIVRSFQMRNFNACFVPGWDCHGLPI 107 + +++ N F G+ C G+PI Sbjct: 71 EFASGYERLQGKNVLFPFGFHCTGMPI 97 Score = 36.5 bits (84), Expect = 0.036 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%) Query: 218 ILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTG 277 +L FP S+ ++ +V T P T+ G + +YG ++ +C+ F Sbjct: 271 VLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFE--ACNETEVFIAT 328 Query: 278 KKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVAN 337 ++ ++N++ + ++ + + DL S PL +++P+ + Sbjct: 329 ER--AARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPM---LTILA 383 Query: 338 DCGTGFVHVAPSHGVEDFTAWNEAK 362 GTG V PS +DF A + K Sbjct: 384 TKGTGVVTSVPSDSPDDFAALQDLK 408 >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 Score = 46.8 bits (112), Expect = 3e-05 Identities = 14/36 (38%), Positives = 22/36 (61%) Query: 630 NGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDY 665 +GEKMSKS GN + + + + +VLR ++S Y Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 >gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 Score = 46.0 bits (110), Expect = 5e-05 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 27/126 (21%) Query: 684 RKLRNTIRWMLGMLAHDTGNEP-SLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVR 742 +L ++ + E + D +L RL L + EAY+ F+E Sbjct: 11 LRLERFYELAEELIETEGELEELTFIDR-----WLLSRLNRLIKETTEAYENMQFREA-- 63 Query: 743 QLTNFSNAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLIIWI---APILPF 798 L ++++ D Y +R + +L R + +W AP P Sbjct: 64 ---------LKEGLYELQNDLDWY------RERGGAGMNKDLLRRFIEVWTRLLAPFAPH 108 Query: 799 TAEEAW 804 AEE W Sbjct: 109 LAEEIW 114 >gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. Length = 129 Score = 41.7 bits (99), Expect = 0.001 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%) Query: 705 PSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS---NAELSSFYFDIRK 761 P + ++ +L EL + V EA + F++ + ++ + N Y D Sbjct: 29 PEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANK-----YIDETA 83 Query: 762 D-SLYCDSPSSLKRLSSIAVIRILC---RHLIIWIAPILPFTAEEAW 804 L + +RL+ V+ +L R L I ++P +P TAE+ Sbjct: 84 PWKLAKEE--DPERLA--TVLYVLLELLRILAILLSPFMPETAEKIL 126 >gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes. Length = 355 Score = 40.7 bits (96), Expect = 0.002 Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLR 687 + G KMS SKGN + EE + + + LR+ +RL ++I +D Y +L Sbjct: 273 LKGGGKMSSSKGNGITIEEWLEYAPPESLRFLMFRVKPKKAKRLDFDVIPKLVDEYDRLE 332 Query: 688 N 688 Sbjct: 333 R 333 >gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 586 Score = 38.8 bits (90), Expect = 0.008 Identities = 27/148 (18%), Positives = 55/148 (37%) Query: 605 LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSD 664 + +S A + + + H + NGEKMSKS N + +E + + LR + Sbjct: 277 IAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQ 336 Query: 665 YHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTEL 724 + + ++ + + L N + +L E L + T + Sbjct: 337 WRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAV 396 Query: 725 DQVVREAYDAFNFKEVVRQLTNFSNAEL 752 + + +D E +R+L + NA + Sbjct: 397 HAALCDNFDTPRVMEAIRELVSQGNAYI 424 >gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase. Length = 345 Score = 36.7 bits (85), Expect = 0.034 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 589 VYLEGSDQHRGWFQHSLLESCATR--GSTP-FTSLITHGFSVD--ENGEKMSKSKGNVVF 643 +Y+ G+DQH H A G P ++ GF V ++G++MS GNVV Sbjct: 234 IYVLGADQH----GHIQRLFAAAAALGYDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVT 289 Query: 644 PEEIISESGADVLRYWAVNSDYHDDQ 669 ++++ E+ + N D D+ Sbjct: 290 LDDLLDEALERAMDIKEKNRDLTADE 315 >gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]. Length = 521 Score = 35.6 bits (82), Expect = 0.062 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRYW--AVNSDYHDDQRLGKNIIQTNIDTYRK 685 + G KMS SKGNV+ + + + +VLRY + H D I++ +D Y + Sbjct: 272 LKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILK-LVDEYDR 330 Query: 686 LRN 688 L Sbjct: 331 LER 333 >gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Length = 353 Score = 33.8 bits (78), Expect = 0.25 Identities = 14/31 (45%), Positives = 20/31 (64%) Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRY 658 + G KMS SKGNV+ P + + + +VLRY Sbjct: 270 LKGGGKMSSSKGNVITPSDWLEVAPPEVLRY 300 Score = 28.4 bits (64), Expect = 8.8 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 18/93 (19%) Query: 44 DKIRESAVGRKNFTLHDG--PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWD 101 +KI E G++ + + G P +GHIHIG+ I D++ R+ + F + WD Sbjct: 9 EKIIEERKGKEKYVVASGISP---SGHIHIGNFREVITADLVARALRDLGFEVRLIYSWD 65 Query: 102 CH--------GLPIEWKVENEYLAKGKKKDDIP 126 + +P ++ +Y+ G +P Sbjct: 66 DYDRLRKVPPNVPESYE---QYI--GMPLSSVP 93 >gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases. Length = 301 Score = 33.5 bits (77), Expect = 0.32 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRY 658 +S A H + GEKMSKS GN + +++ +LRY Sbjct: 228 QSEA-AFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRY 278 >gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 269 Score = 33.0 bits (76), Expect = 0.42 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 13/82 (15%) Query: 587 ADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVF--- 643 D+ L GSDQ +L + +T +G KMSKS+GN ++ Sbjct: 152 VDLQLGGSDQ---RGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDPV 208 Query: 644 ---PEE----IISESGADVLRY 658 P + I + DVL + Sbjct: 209 LDSPYDVYQKIRNAFDPDVLEF 230 >gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 577 Score = 30.2 bits (68), Expect = 2.6 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 582 KLAWPAD--VYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITH---GFSVDENGEKMSK 636 K D +Y+ G+DQH G F+ L G P ++ H G G KMS Sbjct: 329 KFERGFDKLIYVLGADQH-GHFKQ-LKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMST 386 Query: 637 SKGNVVFPEEIISESG 652 GNVV ++++ E+G Sbjct: 387 RAGNVVTLDDLLDEAG 402 Score = 29.4 bits (66), Expect = 4.5 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 66 NGHIHIGHALNKILKDVIVRSFQMRNFN 93 G +HIGH N I+ D + R + ++ Sbjct: 129 TGPLHIGHLRNAIIGDSLARILEFLGYD 156 >gnl|CDD|36192 KOG0974, KOG0974, KOG0974, WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]. Length = 967 Score = 29.9 bits (67), Expect = 3.2 Identities = 49/294 (16%), Positives = 90/294 (30%), Gaps = 41/294 (13%) Query: 641 VVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLG----- 695 P II+ R W VN T ++ Y + W + Sbjct: 225 CFLPNRIITVGEDCTCRVWGVNG--------------TQLEVYDEHSGKGIWKIAVPIGV 270 Query: 696 MLAHDTGNEPSLADMPALEQLMLHRLTE----LDQVVREAYDAFNFKEVVRQLTNFSNAE 751 ++ GN+ +L + L L E L +V+ D F + + N Sbjct: 271 IIKVTGGNDSTLK-LWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKL 329 Query: 752 LSSFYFDIRKDS--LYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLN- 808 + + + +S S L+ + S + + I AW Sbjct: 330 SIL---GNKGEKELITFESDSMLRIIFSCTNDDWV--AHMSNKGDIY-----VAWHQNTI 379 Query: 809 -PEAVSVHLEL--FPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETA 865 S+H +L PI + + SK +Q+R ++ +LE +I S E Sbjct: 380 VITTSSLHRKLSANPISQVCEASYVASKLIDGSIQVRN-LSGSLESFADVLNIRSLKEFR 438 Query: 866 PTLYITDSSLISNIEGENLAEICITSDITIVHSNGPTDAFRLSDVPNVSVQCLK 919 L S +E + ++ + + + P D LS + + Sbjct: 439 LPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLSRSHELDTGS 492 >gnl|CDD|31633 COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]. Length = 758 Score = 29.5 bits (66), Expect = 4.5 Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 899 NGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSAR 947 N P D RL D P+ + L+A K W+V ++ GL D+ Sbjct: 456 NSPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLG 504 >gnl|CDD|146587 pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought to catalyse 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family. Length = 231 Score = 29.5 bits (67), Expect = 4.6 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Query: 393 GARVLDDAGEKGNANEVVIAALINACAILNR 423 G R L A NA V+I + +NA A+ Sbjct: 100 GTRALKRAR---NAKRVLIGSFVNASAVAEY 127 >gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238 Score = 29.1 bits (66), Expect = 5.1 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 62 PPYANGHIHIGHA 74 PP NG++HIGHA Sbjct: 7 PPEPNGYLHIGHA 19 >gnl|CDD|30511 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 401 Score = 28.7 bits (64), Expect = 9.3 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 587 ADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVF 643 D+ L GSDQ W R +T +G+KM KS+G V+ Sbjct: 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVW 234 >gnl|CDD|36362 KOG1147, KOG1147, KOG1147, Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 712 Score = 28.4 bits (63), Expect = 9.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 62 PPYANGHIHIGHALNKILKDVIVRSFQ 88 PP +G++HIGHA +L +++Q Sbjct: 206 PPEPSGYLHIGHAKAALLNQYFAQAYQ 232 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.134 0.409 Gapped Lambda K H 0.267 0.0784 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 11,874,913 Number of extensions: 636280 Number of successful extensions: 1467 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1380 Number of HSP's successfully gapped: 71 Length of query: 963 Length of database: 6,263,737 Length adjustment: 103 Effective length of query: 860 Effective length of database: 4,038,010 Effective search space: 3472688600 Effective search space used: 3472688600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (27.6 bits)