RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (963 letters)



>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 933

 Score = 1002 bits (2591), Expect = 0.0
 Identities = 391/966 (40%), Positives = 552/966 (57%), Gaps = 51/966 (5%)

Query: 8   NYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRE-SAVGRKNFTLHDGPPYAN 66
           +Y  TL LP+TDFPMRA LP+KE +++ +W++  +++KIRE    G+  F LHDGPPYAN
Sbjct: 2   DYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYAN 61

Query: 67  GHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIP 126
           G+IHIGHALNKILKD+IVR   M+ ++  +VPGWDCHGLPIE KVE +     K  +   
Sbjct: 62  GNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFG 121

Query: 127 VNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQI 186
           V EFR+ CR+ A   V  Q ++F+RLG+ GD+ENPY TM    E  +     ++ E   +
Sbjct: 122 VEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLL 181

Query: 187 YRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTI 246
           YRG KP+ WS   +T LAEAE+EY DV   SI V FPVK        + +VIWTTTPWT+
Sbjct: 182 YRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDE-NAYLVIWTTTPWTL 240

Query: 247 PGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVC-DVK 305
           P N AIA   +  Y L +V           G+KLI++K L +S+A +  V+   V    K
Sbjct: 241 PANLAIAVHPDLDYVLVEV----------NGEKLILAKALVESVAKKAGVEDYEVLETFK 290

Query: 306 AEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDIL 365
             +L      HP     Y  + P+I  ++V  D GTG VH AP HG ED+    +     
Sbjct: 291 GSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYG--- 347

Query: 366 LNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSI 425
                 ++V +PVD  G YT EAP + G  V D       AN+ +I  L     +L    
Sbjct: 348 -----LLEVLNPVDDNGRYTEEAPKYEGLFVKD-------ANKKIIEDLKEKGNLLKSEK 395

Query: 426 VKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLR 485
           ++HSYPH WR+K P+I+R T QWF+ +DK       LR + L E+ K+ + P  GKNR  
Sbjct: 396 IEHSYPHCWRTKTPLIYRATPQWFVSVDK-------LRDKMLKEINKVNWVPDWGKNRFG 448

Query: 486 SMIENRPDWLLSRQRNWGVPICFFYNEK-GEILL-DKAINDRIIKTFKDQGSDAWFSEGS 543
           +M+ENRPDW +SRQR WGVPI  +Y ++ GEIL+  + + + + +  +++G D W     
Sbjct: 449 NMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDI 508

Query: 544 RDFFLGD-RASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWP---ADVYLEGSDQHRG 599
            +         + + +  D+LDVWFDS  T   +L     L +P   AD YLEGSDQ RG
Sbjct: 509 DELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRG 568

Query: 600 WFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW 659
           WF  SLL S A  G  P+ +++THGF +DE G KMSKS GNVV P+++I + GAD+LR W
Sbjct: 569 WFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLW 628

Query: 660 AVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLA--DMPALEQLM 717
             +SDY +D R    I++   + YRK+RNT R++LG L      + ++   ++  L++ +
Sbjct: 629 VASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWI 688

Query: 718 LHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSS 777
           L RL  L + VREAY+ ++F +VVR L NF + +LS++Y DI KD LY ++  S  R ++
Sbjct: 689 LSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAA 748

Query: 778 IAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFP--IIPLEWQNACLSK 833
              +  + + L+  +APILPFTAEE W +L  E    SVHLE +P     L    A L+ 
Sbjct: 749 QTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAALAA 808

Query: 834 KWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEICITSDI 893
           +W  +L+LR  V  ALE  R  K IGSSL     +Y  DS L+  +   NL ++ ITS +
Sbjct: 809 RWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTEDSELLYKL-KPNLGKVLITSAV 867

Query: 894 TIVH---SNGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAA 950
            +     +    +A  L D   V +   KAEG+KC R W    ++G +     +  R   
Sbjct: 868 EVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVR 927

Query: 951 VLHELG 956
            + E+ 
Sbjct: 928 RIQEMR 933


>gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 937

 Score =  646 bits (1667), Expect = 0.0
 Identities = 317/958 (33%), Positives = 468/958 (48%), Gaps = 82/958 (8%)

Query: 9   YSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGH 68
           YS T +LP+T   +      +  ++I   Q   +    + S   R  F L D    ANG+
Sbjct: 17  YSITSHLPKT--LVHFNSTGRIGQVIEVIQPPEILSS-QLSDQQRVEFELKD----ANGN 69

Query: 69  IHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVN 128
           +H+GHALNKILKD+I R    +  +A +VPGWDCHGLPIE       L + +        
Sbjct: 70  LHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG--SRTPL 127

Query: 129 EFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYR 188
           E R   R  A   +K Q + F+R G+  D+ENPY T +   EA       K+ E   +YR
Sbjct: 128 EIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYR 187

Query: 189 GIKPIMWSIAEQTTLAEAEIEYHDVD-SDSILVGFPV--KSSADYLIKSQI-----VIWT 240
             KP+ WS + +T LAE+E+EY+D   S S    F +   SS+ +   S+I     ++WT
Sbjct: 188 SFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWT 247

Query: 241 TTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIAL 300
           TTPWT+P N AI+ +S  QY L             T    +++  L +     ++ K  +
Sbjct: 248 TTPWTLPSNNAISVNSAIQYSLVQF------DNNPTSTFYLVASKLLEEFEKSSDRKCKI 301

Query: 301 VCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNE 360
           V  VK  +L      HPL        +P+++  +V +  GTG VH AP+HG ED+     
Sbjct: 302 VGTVKGANLIGRRYKHPLHN---ELGLPILEGPHVTDTVGTGLVHTAPAHGFEDY----- 353

Query: 361 AKDILLNRSVDIKVPSPVDGRGFYTTEA-PGFSGARVLDDAGEKGNANEVVIAALINACA 419
               L+  S  ++V S VD RG YT EA     G  VL +        ++V+  L +   
Sbjct: 354 ----LVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEG------QKIVLRLLNHD-- 401

Query: 420 ILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSS 479
           I++ S   HSYP+ WR+KKP+I R + QWF+ +++       ++ RA   ++ ++  P  
Sbjct: 402 IVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEE-------IKKRASMALDDVKVAPGD 454

Query: 480 GKNRLRSMIENRPDWLLSRQRNWGVPICFFYN-EKGEILLDKAINDRIIKTFKDQGSDAW 538
              RL+ ++  RP W +SRQR WGVPI   Y+   G  L +  I      T + +GSD W
Sbjct: 455 SDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVW 514

Query: 539 FSEGSRDFF-------LGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYL 591
           +     +         + D ASE + +  DI+DVWFDS  + + +L  + +    ADVYL
Sbjct: 515 WEIDVEELLPEEEVREIPDIASE-YKKGTDIMDVWFDSGSSWSAVLDNERE--HVADVYL 571

Query: 592 EGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651
           EG DQ RGWFQ SLL S A +   P+  +I HGF++DENG KMSKS GNVV P  +   S
Sbjct: 572 EGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGS 631

Query: 652 ------GADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEP 705
                 GAD LR+W   S+   + ++G  I+    +   K RNT R++LG L    G + 
Sbjct: 632 LKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQV 691

Query: 706 SL--ADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763
                D+  ++Q ML +L  + + + E Y+ + F++VV  L  F    LS+FYFDI KD 
Sbjct: 692 KFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDR 751

Query: 764 LYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIP 823
           LYCD   S  R S+   +  L  +L   I+PILP  AEE W  L      +    +  + 
Sbjct: 752 LYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLH 811

Query: 824 LEWQN--ACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEG 881
                    LSK    +L++R  + S L +       GS L+  P  +   +  I   E 
Sbjct: 812 SGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYH---TIRIYESE- 867

Query: 882 ENLAEICITSDITIVHSNGPTDAFRLSDVP-NVSVQCLK--AEGKKCARSWRVTKDVG 936
             L E+   S + I+H N   ++  L +       +C K  A   +C R W + K   
Sbjct: 868 --LPELLNVSQV-ILHENRDENSVELVESRLRYCERCRKHRATFSRCVRCWDLRKQDP 922


>gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
           Other tRNA synthetase sub-families are too dissimilar to
           be included.
          Length = 606

 Score =  565 bits (1458), Expect = e-161
 Identities = 235/643 (36%), Positives = 345/643 (53%), Gaps = 51/643 (7%)

Query: 37  WQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACF 96
           W +   F K  E+  G+ +FT+HDGPP A G +HIGHALNK LKD+++R  +M+ F+  +
Sbjct: 6   WDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLW 65

Query: 97  VPGWDCHGLPIEWKVENEYLAKGKK-KDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155
           VPGWD HGLP E KVE +   KGKK +  +   +FR+ CR+    +      +F+RLG+ 
Sbjct: 66  VPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVS 125

Query: 156 GDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215
           GD++  Y T+    EA +    +++ +   IYRG KP+ WS A  T L+EAE+EY DV  
Sbjct: 126 GDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKG 185

Query: 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFD 275
            SI V FP+         + +VIWTTTPWT+PGN A+A +    Y    V          
Sbjct: 186 PSIHVAFPLADGKG----ASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRV---------- 231

Query: 276 TGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYV 335
           TG+  I+++ L +S+  +      ++ D + ++L      HP         +P+I  +YV
Sbjct: 232 TGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF----VNREIPIIADDYV 287

Query: 336 ANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGAR 395
             + GTG VH+AP+HG +D+               +++  +PVD  G Y  EAP F G +
Sbjct: 288 DMEFGTGAVHIAPAHGEDDYEVGKRH---------NLEFINPVDDDGTYNEEAPEFQGLK 338

Query: 396 VLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKK 455
                     A + ++  L     +L    ++HSYPH WRS  PII+R T QWF+ M   
Sbjct: 339 RFK-------ARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN- 390

Query: 456 LGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEK-G 514
                 L   AL  VEK++F P  G+ R  + +EN  DW +SRQR WG PI  +Y++  G
Sbjct: 391 ------LAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTG 444

Query: 515 EILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHT 574
           E+ +  ++ + +    +++G +AW    ++D  LG  A     Q +D+LD WF S     
Sbjct: 445 EVYVRGSLKELVAGREEEEGIEAWLHRDAKDL-LGKGAGT-LEQDEDVLDTWFSSGSWPF 502

Query: 575 ILLG------KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVD 628
             LG       + K  +PAD+ LEGSDQ RGWF   ++   A  GS P+ +++ HG   D
Sbjct: 503 STLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRD 562

Query: 629 ENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRL 671
           E G KMSKS GNV+ P ++I + GAD LR W  +SDY  D   
Sbjct: 563 EQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASSDYGRDINF 605


>gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 877

 Score =  363 bits (932), Expect = e-100
 Identities = 196/822 (23%), Positives = 332/822 (40%), Gaps = 112/822 (13%)

Query: 30  ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89
           E +    W++   F         +  F++   PP   G +H+GHALN  L+D++ R  +M
Sbjct: 11  EEKWYKKWEESGYFKPDPNED--KPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRM 68

Query: 90  RNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEF 149
           R +N  + PG D  G+  +  VE +  A+G  + D+   EF + C +          ++ 
Sbjct: 69  RGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQL 128

Query: 150 QRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE 209
           +RLG+  D+     TM       +    +++ E   IYRG + + W    +T +++ E+E
Sbjct: 129 RRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVE 188

Query: 210 YHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCS 269
           Y +V+     + +P+     Y     +V+ TT P T+ G+ A+A   +            
Sbjct: 189 YKEVEGKLYYIKYPLADGDGY-----LVVATTRPETLLGDTAVAVHPD------------ 231

Query: 270 GQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPL 329
                                            D + + L       PL        +P+
Sbjct: 232 ---------------------------------DERYKHLVGKEVILPL----VGREIPI 254

Query: 330 IDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAP 389
           I  EYV  + GTG V + P+H   D+               ++ + + +D  G    EA 
Sbjct: 255 IADEYVDPEFGTGAVKITPAHDFNDYEVGKRH---------NLPLINIIDEDGRINEEAA 305

Query: 390 G-FSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQW 448
           G F+G    +       A + ++  L     ++     KHS  H  R   PI    + QW
Sbjct: 306 GEFAGLDRFE-------ARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQW 358

Query: 449 FLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506
           F+ +         L  +AL  V+  KI+F P   + R    +EN  DW +SRQ  WG  I
Sbjct: 359 FVKVL-------ELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRI 411

Query: 507 CFFY-NEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDV 565
             +Y  E G +++ +   +       ++                    E   Q +D+LD 
Sbjct: 412 PVWYCKECGNVVVAE--EEPEDPAAAEKCPK-----------------EELEQDEDVLDT 452

Query: 566 WFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSL 620
           WF S+      LG      D K  +P D+ + G D    W    ++      G  PF  +
Sbjct: 453 WFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDV 512

Query: 621 ITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYH-DDQRLGKNIIQTN 679
             HG   DE G KMSKSKGNV+ P ++I + GAD LR+   +      D    +  ++  
Sbjct: 513 YIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY 572

Query: 680 IDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKE 739
            +   KL N  R++L  L     ++  L  +   ++ +L RL E  + V EA D + F E
Sbjct: 573 RNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDE 632

Query: 740 VVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFT 799
             R L  F   +   +Y ++ K  LY        + ++ A +  +   L+  + P +PF 
Sbjct: 633 AARALYEFIWNDFCDWYLELAKPRLYGGEEE---KRAARATLYYVLDTLLRLLHPFMPFI 689

Query: 800 AEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQL 841
            EE W  L     S+HL  +P +  E  +    K++  + ++
Sbjct: 690 TEEIWQKLPGTE-SIHLASWPEVDEELIDEEAEKEFELLKEI 730


>gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 1070

 Score =  322 bits (827), Expect = 3e-88
 Identities = 251/962 (26%), Positives = 419/962 (43%), Gaps = 107/962 (11%)

Query: 21  PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILK 80
           P     P++E +++ +W++I  F    + + GR  FT +DGPP+A G  H GH L   +K
Sbjct: 5   PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIK 64

Query: 81  DVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDI---PVNEFRQACRDS 137
           D++ R       +     GWD HGLP+E++++ +    G  +DD+    ++++   CR  
Sbjct: 65  DIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITG--RDDVMKMGIDKYNNECRKI 122

Query: 138 ASAWVKIQSKEFQRLGIVGDFENPYTTMT---RESEAQIASELLKIAESDQIYRGIKPIM 194
              +     K  +RLG   DF+N Y T+     ES   +  EL    E   +YRG K + 
Sbjct: 123 VMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH---EKGLVYRGFKVMP 179

Query: 195 WSIAEQTTLA--EAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAI 252
           +S A  T L+  EA+  Y DV   ++ V FP+           +V WTTTPWT+P N A+
Sbjct: 180 YSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLAL 235

Query: 253 AFSSNHQYG-LYDVISCSGQHTFDTGKKLIISKN-LAQSIANQTNVKIALVCDVKAEDLS 310
             + + QY  + D           TGKK I+ ++ L +   N  N    ++   +   L 
Sbjct: 236 CVNPDFQYVKIKDK---------TTGKKYILMESRLGELYKNPKNDNYEILERFQGAALV 286

Query: 311 KTMCSHPLKKLGYTFS---VPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLN 367
                        TF      ++  +YV  D GTG VH AP+ G ED+ A      I   
Sbjct: 287 GLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGII--- 343

Query: 368 RSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVK 427
              D   P PVD  G +T+E   F+G  V D       A++++I +L  +  ++  S + 
Sbjct: 344 -RKDSLPPCPVDESGLFTSEVTDFAGQYVKD-------ADKLIIRSLKASGRLVKASQIT 395

Query: 428 HSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKN-RLRS 486
           HSYP  WRS  P+I+R    WF+ +         +  + L    K  + P + K  R  +
Sbjct: 396 HSYPFCWRSDTPLIYRAVPSWFVRVK-------NIVDQLLRNNMKTHWVPQNIKEKRFAN 448

Query: 487 MIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDF 546
            ++N  DW +SR R WG PI  + ++  E   +      I +   ++ S    ++  R+ 
Sbjct: 449 WLKNARDWNISRNRYWGTPIPLWVSDDYE---EVVCIGSIKEL--EELSGVKITDLHRES 503

Query: 547 FLGDRASEPWIQSK-------DILDVWFDS-----ACTHTILLGKDP-KLAWPADVYLEG 593
              D  + P  + K       ++ D WF+S     A  H     K+  +  +PAD   EG
Sbjct: 504 I--DHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEG 561

Query: 594 SDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGA 653
            DQ RGWF   L+ S A  G  PF ++I +G  + E+G+KMSK   N   P  II++ GA
Sbjct: 562 LDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGA 621

Query: 654 DVLRYWAVNSDYHDDQRLG----------KNIIQTNIDTYRKLRNTIRWMLGMLAHDTGN 703
           D LR + +NS     + L           K+++    ++YR L      +      D   
Sbjct: 622 DALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVF 681

Query: 704 EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763
           + S+     +++ +L     L   VRE  D +    VV +L  F + EL+++Y    +  
Sbjct: 682 DDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFID-ELTNWYIRFNRRR 740

Query: 764 LYCDS--PSSLKRLSSI-AVIRILCRHLIIWIAPILPFTAEEAWLSLNP---------EA 811
           L  ++        L+ +  V+  L R +    AP  PF  E  + +L             
Sbjct: 741 LKGENGEHDCHNALNVLFEVLFTLVRVM----APFTPFFTEYIYQNLKKYIPIDKNEKSE 796

Query: 812 VSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEI-ERKAKHIGSSLETAPTLYI 870
            SVH   +P    E  +  + +   ++ +++ ++  A  I ER    + + L+    +  
Sbjct: 797 RSVHFLSYPTPKEELIDETVER---RVERMQSIIDLARNIRERNTISLKTPLKEL-IVIH 852

Query: 871 TDSSLISNIEG--ENLAEICITSDITIVHSNGPTDAFRLSDVPNVSV--QCLKAEGKKCA 926
           +D   + +I+     + E     ++    S+       L   P+  V  + LK + KK  
Sbjct: 853 SDEEYLEDIKSLERYILEELNVREVVFT-SDEEKYGVVLKAEPDFPVLGKKLKKDMKKVK 911

Query: 927 RS 928
           ++
Sbjct: 912 KA 913


>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
           synthetases.  Isoleucine amino-acyl tRNA synthetases
           (IleRS) catalytic core domain . This class I enzyme is a
           monomer which aminoacylates the 2'-OH of the nucleotide
           at the 3' of the appropriate tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding.  IleRS has an insertion in the core domain,
           which is subject to both deletions and rearrangements.
           This editing region hydrolyzes mischarged cognate tRNAs
           and thus prevents the incorporation of chemically
           similar amino acids.
          Length = 338

 Score =  230 bits (589), Expect = 1e-60
 Identities = 90/247 (36%), Positives = 121/247 (48%), Gaps = 54/247 (21%)

Query: 435 RSKK----PIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIEN 490
           R  K    P+I+R T QWF+ + K       ++ R L   +K+ + P   KNR  + +EN
Sbjct: 136 RGYKVVPWPLIYRATPQWFIRVTK-------IKDRLLEANDKVNWIPEWVKNRFGNWLEN 188

Query: 491 RPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGD 550
           R DW +SRQR WG PI  +Y E    +L +                              
Sbjct: 189 RRDWCISRQRYWGTPIPVWYCEDCGEVLVR------------------------------ 218

Query: 551 RASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSL 605
                  +  D+LDVWFDS       L      +D +  +PAD  LEGSDQ RGWF   L
Sbjct: 219 -------RVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLL 271

Query: 606 LESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSD- 664
           L S A  G  P+ ++I HGF +DE+G KMSKS GN V P+E++ + GAD LR W  +SD 
Sbjct: 272 LLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDV 331

Query: 665 YHDDQRL 671
           Y +D R 
Sbjct: 332 YAEDLRF 338



 Score =  204 bits (520), Expect = 2e-52
 Identities = 68/141 (48%), Positives = 85/141 (60%), Gaps = 1/141 (0%)

Query: 56  FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEY 115
           F  HDGPPYANG  H GHALNKILKD+I R   M+ +     PGWDCHGLPIE KVE E 
Sbjct: 3   FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62

Query: 116 LAKGKK-KDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIA 174
              GKK  + + + EF   CR+ A  +V  Q ++FQRLG+  D+ENPY TM  E    + 
Sbjct: 63  GISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVW 122

Query: 175 SELLKIAESDQIYRGIKPIMW 195
               ++ E   +YRG K + W
Sbjct: 123 WVFKQLHEKGLLYRGYKVVPW 143


>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
           bacterial and eukaryotic mitochondrial isoleucyl tRNA
           synthetases.  This domain is found in isoleucyl tRNA
           synthetases (IleRS), which belong to the class Ia
           aminoacyl tRNA synthetases. It lies C-terminal to the
           catalytic core domain, and recognizes and specifically
           binds to the tRNA anticodon. This family includes
           bacterial and eukaryotic mitochondrial members. IleRS
           catalyzes the transfer of isoleucine to the 3'-end of
           its tRNA.
          Length = 180

 Score =  216 bits (552), Expect = 3e-56
 Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 6/181 (3%)

Query: 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHD---TGNEPSLADMPALEQLMLHRLTELDQV 727
           +   I++   + YRK+RNT R++LG L +D     +     ++  L++  LHRL EL + 
Sbjct: 1   ISDEILKQVAEAYRKIRNTFRFLLGNL-NDFDPAKDAVPYEELLELDRYALHRLNELIKE 59

Query: 728 VREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRH 787
           VREAY+ + F +V + L NF   +LS+FY DI KD LYCD+  SL+R S+  V+  +   
Sbjct: 60  VREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDA 119

Query: 788 LIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVV 845
           L+  +APILPFTAEE W  L  E    SV LE +P +P EW++  L +KW K+L LR  V
Sbjct: 120 LLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEWKDEELEEKWEKLLALRDEV 179

Query: 846 T 846
            
Sbjct: 180 N 180


>gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 995

 Score =  216 bits (551), Expect = 3e-56
 Identities = 212/951 (22%), Positives = 332/951 (34%), Gaps = 177/951 (18%)

Query: 30  ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89
           ES    +W+K   F K          F +   PP   G +HIGHAL   ++D + R  +M
Sbjct: 52  ESAWYKWWEKQGFF-KPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRM 110

Query: 90  RNFNACFVPGWDCHGLPIEWKVENEYLAK--GKKKDDIPVNEFRQACRDSASAWVKIQSK 147
             +   +VPG D  G+  +  VE + LA+  GK + D+   EF +   +    +      
Sbjct: 111 HGYQVLWVPGTDHAGIATQVVVE-KQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYN 169

Query: 148 EFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAE 207
           + +RLG   D++    TM  +    +    +++ E   IYR  + + W  A ++ +++ E
Sbjct: 170 QLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIE 229

Query: 208 IEYHDVDSDSIL--------VGFPVKSSADYLI---KSQIVIWTTTPWTIPGNRAIAFSS 256
           +E  ++   ++L        V F V  S  Y +     +IV+ TT P TI G+ A+A   
Sbjct: 230 VESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAV-- 287

Query: 257 NHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSH 316
                          H  D   K +  K                               H
Sbjct: 288 ---------------HPDDDRYKHLHGKF----------------------------VKH 304

Query: 317 PLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPS 376
           P         +P+I    V  + GTG V + P+H   D+      +  L   ++      
Sbjct: 305 PFTGR----KLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGK--RHNLEFINI------ 352

Query: 377 PVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAAL--INACAILNRSIVKHSY--PH 432
                G        F G +  +       A E V+  L  +     L      H    P 
Sbjct: 353 -FTDDGLLNNVCGEFKGMKRFE-------AREKVVEKLKELG----LYVGKENHPMVLPI 400

Query: 433 SWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIEN 490
             RS   I      QWF+   +       +  +AL  VE  K+   P   +      +EN
Sbjct: 401 CSRSGDVIEPLLKPQWFVSCKE-------MAKKALKAVESGKLEILPEFHEKEWYRWLEN 453

Query: 491 RPDWLLSRQRNWG--VPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFL 548
             DW +SRQ  WG  +P  F     G    D  +  R         S+    E + + F 
Sbjct: 454 IRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVAR---------SEEEAREKAAEKF- 503

Query: 549 GDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQH 603
           G        Q  D+LD WF S       LG     KD K  +P  +   G D    W   
Sbjct: 504 GPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVAR 563

Query: 604 SLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEI---------------- 647
            ++      G  PF  ++ HG   D +G KMSKS GNV+ P ++                
Sbjct: 564 MVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSG 623

Query: 648 ---------------------ISESGADVLRYWAVNSDYH-DDQRLGKNIIQTNIDTYRK 685
                                I E G D LR+   +      D  L    ++       K
Sbjct: 624 NLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNK 683

Query: 686 LRNTIRWMLGMLAHDTGNEPSLADMPALEQL-----MLHRLTELDQVVREAYDAFNFKEV 740
           L N  R+ L  L       PS  +  +  +      +L RL E  + V E+ +A NF   
Sbjct: 684 LWNATRFALQRLG--ENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLA 741

Query: 741 VRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLII---WIAPILP 797
              L  F   +L   Y +  K  L+ DS +      +    R+L R L      + P +P
Sbjct: 742 TSALYAFWLYDLCDVYLEATKPLLWGDSEA-----LAYEARRVLYRCLDNGLRLLHPFMP 796

Query: 798 FTAEEAWLSL----NPEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSA---LE 850
           F  EE W  L      +  S+ +  +P     W+N  L   +  +L + + + S      
Sbjct: 797 FITEELWQRLPRRKGSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYN 856

Query: 851 IERKAKH---IGSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHS 898
           +  K +    I SS E   ++       IS +    L  I   ++      
Sbjct: 857 LSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISSPAEEDAQGC 907


>gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 814

 Score =  150 bits (380), Expect = 2e-36
 Identities = 177/834 (21%), Positives = 283/834 (33%), Gaps = 152/834 (18%)

Query: 36  YWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNAC 95
            W++ ++F+   +S    K + L    PY +G +H+GH  N  + DVI R  +M+ +N  
Sbjct: 17  RWEEAKVFEADEDSDKPEKFYVL-VMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVL 75

Query: 96  FVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155
              GWD  GLP E         K                +           K+ + LG  
Sbjct: 76  HPMGWDAFGLPAE-----NAAIKIGTDPAKWTYYNIAYMK-----------KQLKSLGFS 119

Query: 156 GDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215
            D+   + T   E    I  + LK+ E    YR   P+ W   + T LA  ++       
Sbjct: 120 IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWR 179

Query: 216 DSILVG--------FPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVIS 267
               V         F +   AD L+     + T  P T+ G +      +  Y +  V+ 
Sbjct: 180 CGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVD 239

Query: 268 CSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSV 327
                    G++ I+S  +  +  +     +  V       L   + ++P   L      
Sbjct: 240 ---------GEEEIVSIEVFTTRPDTLF-GVTYVVLAPEHPLVGKLVTNPQTPLV----- 284

Query: 328 PLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTE 387
               AE+V    GTG V   P+H  +D               +     +PV+G      +
Sbjct: 285 ----AEFVDECKGTGVVESVPAHAEKDGVF------------LGGYAINPVNGE-----K 323

Query: 388 APGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQ 447
            P +    VL + G        V+            +  +     + + K PI      +
Sbjct: 324 IPVWIANYVLMEYGT-----GAVMGV---------PAHDERDLEFATKYKLPIKKVIMPE 369

Query: 448 WFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENR-----------PDWLL 496
             +      G+G  + S  L  +          K ++R  +  R            DWL 
Sbjct: 370 GTVGKKVYEGEGVLINSGGLDGL-----DYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLK 424

Query: 497 SRQRNWGVPICFFYNEKGEI-------LLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLG 549
           SRQR WG PI   + E   +       L  K             GS   + E      L 
Sbjct: 425 SRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVR---GLGTGSPLPWDEEWVIESLP 481

Query: 550 DRASEP-------WIQSKDILDVWFDSACTHTILLGKDPKLAW-PADVYLEGSDQ----- 596
           D  +         +I S      +FD      +   ++    W P D+Y+ G +      
Sbjct: 482 DSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHL 541

Query: 597 ------HRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISE 650
                 H+  F   L+         PF  LIT G  + E GEKMSKSKGNVV PEE + +
Sbjct: 542 LYFRFFHKALFDEGLVPK-----DEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK 596

Query: 651 SGADVLR-YWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLAD 709
            GAD +R Y    +    D    ++ ++      +++ N ++  L  L  +   E    D
Sbjct: 597 YGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKED 656

Query: 710 MPALEQLMLHRLTELDQVVREAYDA-FNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDS 768
                + +LHR     + V E ++A   F   +  L    NA        +R+       
Sbjct: 657 -----RWLLHRTI---KKVTEDFEARQTFNTAIAALMELLNA----LRKYLRRTEG---- 700

Query: 769 PSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPII 822
                      V+R      +  +AP  P  AEE W  L  E   V    +P  
Sbjct: 701 --------DRKVLREALETWVRLLAPFAPHIAEELWEELGNEG-FVSNAPWPEP 745


>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
           synthetases.  Valine amino-acyl tRNA synthetase (ValRS)
           catalytic core domain. This enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding.  ValRS has an
           insertion in the core domain, which is subject to both
           deletions and rearrangements. This editing region
           hydrolyzes mischarged cognate tRNAs and thus prevents
           the incorporation of chemically similar amino acids.
          Length = 382

 Score =  143 bits (363), Expect = 2e-34
 Identities = 68/239 (28%), Positives = 102/239 (42%), Gaps = 29/239 (12%)

Query: 433 SWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIEN 490
             RS   I      QWF+ +         L  +AL  V++  I+F P   + R  + +EN
Sbjct: 156 CSRSGDVIEPLLKPQWFVKV-------KDLAKKALEAVKEGDIKFVPERMEKRYENWLEN 208

Query: 491 RPDWLLSRQRNWGVPICFFY-NEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLG 549
             DW +SRQ  WG  I  +Y  + G  ++ +  ++ I K   +                 
Sbjct: 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC------------ 256

Query: 550 DRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHS 604
               E   Q +D+LD WF S+      LG     KD K  +P  + + G D    W    
Sbjct: 257 --GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARM 314

Query: 605 LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNS 663
           ++      G  PF  +  HG   DE+G KMSKS GNV+ P ++I   GAD LR+   ++
Sbjct: 315 IMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASA 373



 Score =  118 bits (298), Expect = 8e-27
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 62  PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKK 121
           PP   G +H+GHALN  ++D+I R  +M+ +N  + PG D  G+  +  VE +   +GK 
Sbjct: 9   PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68

Query: 122 KDDIPVNEFRQACRDSASAWVKIQSKE----FQRLGIVGDFENPYTTMTRESEAQIASEL 177
           + D+   EF + C +    W +    +     +RLG   D+   Y TM       +    
Sbjct: 69  RHDLGREEFLEKCWE----WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124

Query: 178 LKIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208
           +++ E   IYR  + + W    +T +++ E+
Sbjct: 125 VRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155


>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
           isoleucyl, leucyl, valyl and methioninyl tRNA
           synthetases.  Catalytic core domain of isoleucyl,
           leucyl, valyl and methioninyl tRNA synthetases. These
           class I enzymes are all monomers. However, in some
           species, MetRS functions as a homodimer, as a result of
           an additional C-terminal domain. These enzymes
           aminoacylate the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding.  Enzymes in
           this subfamily share an insertion in the core domain,
           which is subject to both deletions and rearrangements.
           This editing region hydrolyzes mischarged cognate tRNAs
           and thus prevents the incorporation of chemically
           similar amino acids. MetRS has a significantly shorter
           insertion, which lacks the editing function.
          Length = 312

 Score =  136 bits (344), Expect = 3e-32
 Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 56  FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEY 115
           F +   PPYANG +H+GHAL  I+ D I R  +MR +   F+PGWD HGLPIE K E   
Sbjct: 2   FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAER-- 59

Query: 116 LAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIAS 175
              G+KK  I + EFR+  ++          ++F+RLGI  D+ + Y T   E    +  
Sbjct: 60  -KGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVEL 118

Query: 176 ELLKIAESDQIYRGIKPI 193
              ++ E   IYRG  P+
Sbjct: 119 IFSRLYEKGLIYRGTHPV 136



 Score =  129 bits (327), Expect = 3e-30
 Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 54/234 (23%)

Query: 437 KKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLL 496
           +     R T QWF  M K        + + L  + + +  P   KNR+ + +E+  DW +
Sbjct: 131 RGTHPVRITEQWFFDMPK-------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAI 183

Query: 497 SRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPW 556
           SRQR WG P+                 D           D WF  G              
Sbjct: 184 SRQRYWGTPL---------------PEDVF---------DVWFDSGI------------- 206

Query: 557 IQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTP 616
                        +        +  K ++PAD +L G D  RGW    +    A  G  P
Sbjct: 207 ---------GPLGSL-GYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIP 256

Query: 617 FTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQR 670
             +L+ HGF +DE G+KMSKSKGNV+ P +++ + GAD LRY+  +   + D  
Sbjct: 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDI 310


>gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 558

 Score = 98.8 bits (246), Expect = 6e-21
 Identities = 95/445 (21%), Positives = 157/445 (35%), Gaps = 81/445 (18%)

Query: 431 PHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFF--PSSGKNRLRSMI 488
           P    S      R    +F  + K        + + L   E    F  P++ +N + + +
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSK-------FQDKLLEWYESNPDFIWPANRRNEVLNFL 225

Query: 489 ENR-PDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDF 546
           +    D  ++R   +WG+P+     +   +  D  I    I    +  ++    E  + F
Sbjct: 226 KEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIG--YISALGE-LAEIGDDEDFKKF 282

Query: 547 FLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLL 606
           +  D         KDI  + F     H +         WPA   L  +            
Sbjct: 283 WPADDTELVHFIGKDI--IRF-----HAVY--------WPA--MLMAAGLPL-------- 317

Query: 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW-AVNSDY 665
                      T +  HGF   E G+KMSKS+GNVV P+E++ + G D LRY+ A     
Sbjct: 318 ----------PTRIFAHGFLTLE-GQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPE 366

Query: 666 HDDQRLGKNIIQT--NIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQL--MLHRL 721
             D            N D   KL N     LG +          A  P LE+   +L   
Sbjct: 367 GSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALA 426

Query: 722 TELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFD------IRKDSLYCDSPSSLKRL 775
            E  + V EA + + F++ + ++     A  ++ Y D      + K+    D    L  +
Sbjct: 427 REALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLAKE----DKRERLATV 480

Query: 776 --SSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSK 833
              ++ ++R+L     I + P +P TAE+ W  L  E               W  A    
Sbjct: 481 LYLALELVRVLA----ILLYPFMPETAEKIWDQLGLE--------EDARNFTWLGARQPL 528

Query: 834 KWGKILQLRKVVTSALEIERKAKHI 858
             G  L   + +   +E E   + I
Sbjct: 529 LPGHKLGPPEPLFPRIEEEAIEELI 553



 Score = 68.8 bits (168), Expect = 8e-12
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 53  RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE 112
            K   +    PY NG  H+GH    +  DV  R  ++R +   F+ G D HG  IE K E
Sbjct: 4   MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAE 63

Query: 113 NEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ 172
            E          I   E       +     +   + F+ L I  D    +   T     +
Sbjct: 64  KE---------GITPQEL---VDKNH----EEFKELFKALNISFDN---FIRTTSPEHKE 104

Query: 173 IASEL-LKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE 209
           +  E  LK+ E+  IY      ++ ++ +  L +  +E
Sbjct: 105 LVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142


>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
           synthetases.  Leucyl tRNA synthetase (LeuRS) catalytic
           core domain. This class I enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding. In Aquifex
           aeolicus, the gene encoding LeuRS is split in two, just
           before the KMSKS motif. Consequently, LeuRS is a
           heterodimer, which likely superimposes with the LeuRS
           monomer found in most other organisms. LeuRS has an
           insertion in the core domain, which is subject to both
           deletions and rearrangements and thus differs between
           prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
           editing region hydrolyzes mischarged cognate tRNAs and
           thus prevents the incorporation of chemically similar
           amino acids.
          Length = 314

 Score = 71.9 bits (177), Expect = 7e-13
 Identities = 59/234 (25%), Positives = 76/234 (32%), Gaps = 88/234 (37%)

Query: 447 QWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506
           QWFL    K  +    + + L ++EK+  +P   +    + I        SRQR WG PI
Sbjct: 131 QWFL----KYSETEW-KEKLLKDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPI 179

Query: 507 CFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVW 566
                                                           PW    D ++  
Sbjct: 180 ------------------------------------------------PW---TDTMESL 188

Query: 567 FDS-------ACTH------TILLGKDPKLA--W-PADVYLEGSDQ-------HRGWFQH 603
            DS          H         L  D +    W P D+Y+ G +         R  F H
Sbjct: 189 SDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR--FNH 246

Query: 604 SLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLR 657
             L         P   LI  G  V   GEKMSKSKGNVV P+E I + GAD  R
Sbjct: 247 KALFDEGLVTDEPPKGLIVQGM-VLLEGEKMSKSKGNVVTPDEAIKKYGADAAR 299



 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 63  PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIE 108
           PY +G +H+GH     + D+I R  +M+ +N  F  G+D  GLP E
Sbjct: 9   PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE 54


>gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 876

 Score = 71.2 bits (174), Expect = 1e-12
 Identities = 87/395 (22%), Positives = 136/395 (34%), Gaps = 86/395 (21%)

Query: 493 DWLLSRQRNWGVPICFFYNEKGEI---------LLDKAINDRIIKTFKDQGSDAWFSEGS 543
           DWL+SRQR WG PI   + +             +    +ND   K      +D W +   
Sbjct: 421 DWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDC 480

Query: 544 RDFFLGDRASEPWIQSKDILDVWFDSACTH---------TILLGKDPKLAW-PADVYLEG 593
                  R  EP  +  D +D + DS+  +              K       P DVY+ G
Sbjct: 481 ------PRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGG 534

Query: 594 SDQ---HRGW--FQHSLLESC-ATRGSTPFTSLITHG------FSVDENG---------- 631
            +    H  +  F    L+       + PFT LIT G      F   E+G          
Sbjct: 535 KEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQ 594

Query: 632 ---------------------EKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQR 670
                                EKMSKSK N V P +++ E G D  R + + +    D  
Sbjct: 595 VNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPI 654

Query: 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTEL-DQVVR 729
                   N +    +    RW L  +           D    + L    LT+  D   R
Sbjct: 655 --------NWNE-SAIPGIKRW-LQRIWALVSQILQARDDGKAKDLKK--LTDGFDAETR 702

Query: 730 EAYDAFNFKEVVRQLT-NFSNA-ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRH 787
           +  + +NF   ++Q+T ++     L++   D+   +        +  + S    R L   
Sbjct: 703 KLKETYNF--FIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSPEFERALEA- 759

Query: 788 LIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPII 822
           L+I +AP  P  A E W +L  +   V    +P +
Sbjct: 760 LVIMLAPFAPHVASELWSALANDLSWVSDVKWPEV 794



 Score = 60.0 bits (145), Expect = 3e-09
 Identities = 64/383 (16%), Positives = 127/383 (33%), Gaps = 109/383 (28%)

Query: 31  SELITYWQK--IRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQ 88
           + +  +W++     F   ++S   +K + L    PY +G +HIGH     + D++ R ++
Sbjct: 33  AMIEKHWKQYLKDGFPFSKDSDKSKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYR 91

Query: 89  MRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW----VKI 144
           M+ +N     GWD  GLP     EN  + +G                   ++W    +  
Sbjct: 92  MKGYNVIHPMGWDAFGLP----AENAAIERGV----------------HPASWTINNIAK 131

Query: 145 QSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204
             ++ + LGI  D++   +T   +         LK+ E    Y+    + W   ++T LA
Sbjct: 132 MKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLA 191

Query: 205 EAEIEYHDV-------------------------------------------------DS 215
             +++                                                       
Sbjct: 192 NEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRC 251

Query: 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFD 275
           D   + FP+           + ++TT P T+ G   +  + +H     D           
Sbjct: 252 DGAELMFPLLDDGSN--DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------- 299

Query: 276 TGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYV 335
                    +L + ++     +  +    +A++        P+       ++P++ A+YV
Sbjct: 300 ---------SLKEFLSKSDLPQKGVQLPCQAKN--------PVTGR----AIPVVVADYV 338

Query: 336 ANDCGTGFVHVAPSHGVEDFTAW 358
            +  GTG V  AP H   D    
Sbjct: 339 LDPYGTGAVMGAPGHDQRDKELA 361


>gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 578

 Score = 68.9 bits (168), Expect = 6e-12
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 42/296 (14%)

Query: 538 WFSEGSRDFFLGDRASE-PW-----IQSKDILDVWFDSACTHTILLGKDPK--------- 582
           W   G  D  +   ++   W           + VWFD+   +  ++G   K         
Sbjct: 236 WLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALS 295

Query: 583 LAWPADVYLEGSDQ---HRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKG 639
             WPA +++ G D    H  ++   L+ +    G      +  HG    +NG KMSKS G
Sbjct: 296 FGWPATLHVIGKDILRFHAVYWPAFLMAA----GLPLPKMIFVHGHWT-KNGMKMSKSLG 350

Query: 640 NVVFPEEIISESGADVLRYWAV-------NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRW 692
           NVV P E++ + G D +RY+ +       + DY ++    K I   N      L N +  
Sbjct: 351 NVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEE----KLIKIVNAHLANTLGNLLNR 406

Query: 693 MLGMLAHDTGNEPSL----ADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748
            LG   + +  E +L      + A  + ++  + +L +V    YD F+    +  + +  
Sbjct: 407 CLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIG 466

Query: 749 NAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLI-IWIAPILPFTAEE 802
           NA   +     R    L+ DS  S + L+ +  I +    +I I + P+ P  +  
Sbjct: 467 NA--GNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLR 520



 Score = 38.5 bits (89), Expect = 0.010
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 26/149 (17%)

Query: 64  YANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKD 123
           Y N   H+GH  + +L D I R  +++     F  G D HGL I+           +  D
Sbjct: 49  YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCD 108

Query: 124 DIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ---IASELLKI 180
            I                    S+ F++L         YT   R ++ +   I  E    
Sbjct: 109 RI--------------------SQSFRQLWKDAGIA--YTKFIRTTDPKHEAIVQEFWAR 146

Query: 181 AESD-QIYRGIKPIMWSIAEQTTLAEAEI 208
              +  IYRG     + ++++T   E+++
Sbjct: 147 VFKNGDIYRGDYEGWYCVSDETFYPESKV 175


>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
           synthetases.  Methionine tRNA synthetase (MetRS)
           catalytic core domain. This class I enzyme aminoacylates
           the 2'-OH of the nucleotide at the 3' of the appropriate
           tRNA. MetRS, which consists of the core domain and an
           anti-codon binding domain, functions as a monomer.
           However, in some species the anti-codon binding domain
           is followed by an EMAP domain. In this case, MetRS
           functions as a homodimer. The core domain is based on
           the Rossman fold and is responsible for the
           ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding.  As a result of a deletion event, MetRS has a
           significantly shorter core domain insertion than IleRS,
           ValRS, and LeuR.  Consequently, the MetRS insertion
           lacks the editing function.
          Length = 319

 Score = 64.1 bits (157), Expect = 2e-10
 Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 61/226 (26%)

Query: 441 IFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIENR-PDWLLS 497
            +R    +F  + K        + R L  +EK     +P + +N + S ++    D  ++
Sbjct: 133 EWREEEHYFFRLSK-------FQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSIT 185

Query: 498 RQR-NWGVPICFFYNEKGEILLDKAIN--DRIIKTFKDQGSDAWFSEGSRD--FFLGDRA 552
           R   +WG+P+     +   +  D  I          ++ G+  W+ +G  +   F+G   
Sbjct: 186 RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIG--- 242

Query: 553 SEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATR 612
                  KDI  + F     H I         WPA                         
Sbjct: 243 -------KDI--IRF-----HAIY--------WPA-------------MLLGA------- 260

Query: 613 GSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRY 658
           G    T ++ HG+   E G+KMSKS+GNVV P++++   GAD LRY
Sbjct: 261 GLPLPTRIVAHGYLTVE-GKKMSKSRGNVVDPDDLLERYGADALRY 305



 Score = 62.5 bits (153), Expect = 6e-10
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 63  PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENE 114
           PY NG  H+GH    +L DV  R  ++R ++  FV G D HG  IE K E E
Sbjct: 9   PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60


>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
           archaeal, bacterial, and eukaryotic cytoplasmic
           isoleucyl tRNA synthetases.  This domain is found in
           isoleucyl tRNA synthetases (IleRS), which belong to the
           class Ia aminoacyl tRNA synthetases. It lies C-terminal
           to the catalytic core domain, and recognizes and
           specifically binds to the tRNA anticodon. This family
           includes bacterial, archaeal, and eukaryotic cytoplasmic
           members. IleRS catalyzes the transfer of isoleucine to
           the 3'-end of its tRNA.
          Length = 183

 Score = 58.7 bits (143), Expect = 8e-09
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)

Query: 701 TGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIR 760
             ++ ++A +  L++ +L RL  L + V E  +A++    VR L  F + EL+++Y  IR
Sbjct: 36  GKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFID-ELTNWY--IR 92

Query: 761 -------KDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAV- 812
                   +    D  ++   L    V+  L R L   +AP  PF  EE + +L  E   
Sbjct: 93  RNRKRFWGEEGDDDKLAAYATLYE--VLLTLSR-L---MAPFTPFITEEIYQNLRRELGD 146

Query: 813 ---SVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSAL 849
              SVHL  +P +     +  L +    +  +R++V    
Sbjct: 147 APESVHLLDWPEVDESLIDEELEE---AMELVREIVELGR 183


>gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 464

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 608 SCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHD 667
           S A  G  PF     H   ++ +GEKMSKS GN +   +++ +   +VLR + ++S Y  
Sbjct: 243 SEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRS 302

Query: 668 DQRLGKNIIQTNIDTYRKLRNTIR 691
                + +++       +L N +R
Sbjct: 303 PLDFSEELLEEAKKALERLYNALR 326


>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
           aminoacyl tRNA synthetases and similar domains.  This
           domain is found in a variety of class Ia aminoacyl tRNA
           synthetases, C-terminal to the catalytic core domain. It
           recognizes and specifically binds to the anticodon of
           the tRNA. Aminoacyl tRNA synthetases catalyze the
           transfer of cognate amino acids to the 3'-end of their
           tRNAs by specifically recognizing cognate from
           non-cognate amino acids. Members include valyl-,
           leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
           methionyl-tRNA synthethases. This superfamily also
           includes a domain from MshC, an enzyme in the mycothiol
           biosynthetic pathway.
          Length = 117

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 674 NIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYD 733
             ++       +L   + +    L        +   +   ++ +L RL E  +    A +
Sbjct: 2   ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNEL-LEEADRELLARLQEFIKRTTNALE 60

Query: 734 AFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIA 793
           A +    V++L  F+N    ++Y D  K +L     +   R + +AV+R     L   +A
Sbjct: 61  ALDPTTAVQELFKFTNEL--NWYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLA 114

Query: 794 PIL 796
           P  
Sbjct: 115 PFT 117


>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
           synthetases.  This domain is found in valyl tRNA
           synthetases (ValRS), which belong to the class Ia
           aminoacyl tRNA synthetases. It lies C-terminal to the
           catalytic core domain, and recognizes and specifically
           binds to the tRNA anticodon. ValRS catalyzes the
           transfer of valine to the 3'-end of its tRNA.
          Length = 135

 Score = 53.3 bits (129), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 680 IDTYRKLRNTI----RWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAF 735
           ++  R   N +    R++L  L  D   E     +   ++ +L RL +  + V EA + +
Sbjct: 6   VEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENY 65

Query: 736 NFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795
            F E    L  F   +   +Y ++ K  LY +      + ++ A +  +   ++  + P 
Sbjct: 66  RFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEE--KKAARATLYYVLETILRLLHPF 123

Query: 796 LPFTAEEAWLSL 807
           +PF  EE W  L
Sbjct: 124 MPFITEELWQRL 135


>gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 1080

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 28/192 (14%)

Query: 630 NGEKMSKSKGNVVFPEEIISESGADVLRY-WAVNSDYHDDQRLGKNIIQTNIDTY-RKLR 687
           N EKMSKS GN +  E+ I + GAD  R   A   D  +D     N ++ N +    +L 
Sbjct: 707 NSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVED----ANFVEANANAAILRLY 762

Query: 688 NTIRWMLGMLAHDTGNEPSLADMPA---LEQLMLHRLTELDQVVREAYDAFNFKEVVRQL 744
             + W+  M      N  SL   PA    +++  + +  L      AY+   FK+ ++  
Sbjct: 763 TYVEWIEEMCE----NRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALK-- 816

Query: 745 TNFSNAELSSFY-FDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEA 803
                     FY     +D         + R     ++        + +API P  AE  
Sbjct: 817 --------YGFYDLQAARDMYRELCGEGMHR----DLVFRFIETQTLLLAPICPHLAEYI 864

Query: 804 WLSLNPEAVSVH 815
           W ++  +  SV+
Sbjct: 865 WRTVLKKNFSVN 876



 Score = 38.5 bits (89), Expect = 0.010
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 23  RAKLPQKESELITYWQKIRLF--DKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILK 80
           R  L + E +    W   ++F  D   E    +  F +    PY NG +H+GHA +    
Sbjct: 11  RDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKV 70

Query: 81  DVIVRSFQMRNFNACFVPGWDCHGLPI 107
           +      +++  N  F  G+ C G+PI
Sbjct: 71  EFASGYERLQGKNVLFPFGFHCTGMPI 97



 Score = 36.5 bits (84), Expect = 0.036
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 218 ILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTG 277
           +L  FP   S+   ++  +V  T  P T+ G        + +YG ++  +C+    F   
Sbjct: 271 VLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFE--ACNETEVFIAT 328

Query: 278 KKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVAN 337
           ++   ++N++     +    ++ +  +   DL     S PL      +++P+     +  
Sbjct: 329 ER--AARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPM---LTILA 383

Query: 338 DCGTGFVHVAPSHGVEDFTAWNEAK 362
             GTG V   PS   +DF A  + K
Sbjct: 384 TKGTGVVTSVPSDSPDDFAALQDLK 408


>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
           synthetase.  Cysteinyl tRNA synthetase (CysRS) catalytic
           core domain. This class I enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding.
          Length = 213

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 630 NGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDY 665
           +GEKMSKS GN +   + + +   +VLR   ++S Y
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206


>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
           and eukaryotic cytoplasmic leucyl tRNA synthetases.
           This domain is found in leucyl tRNA synthetases (LeuRS),
           which belong to the class Ia aminoacyl tRNA synthetases.
           It lies C-terminal to the catalytic core domain. In
           contrast to other class Ia enzymes, the anticodon is not
           used as an identity element in LeuRS (with exceptions
           such as Saccharomyces cerevisiae and some other
           eukaryotes). No anticodon-binding site can be defined
           for this family, which includes archaeal and eukaryotic
           cytoplasmic members. LeuRS catalyzes the transfer of
           leucine to the 3'-end of its tRNA.
          Length = 117

 Score = 46.0 bits (110), Expect = 5e-05
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 27/126 (21%)

Query: 684 RKLRNTIRWMLGMLAHDTGNEP-SLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVR 742
            +L         ++  +   E  +  D       +L RL  L +   EAY+   F+E   
Sbjct: 11  LRLERFYELAEELIETEGELEELTFIDR-----WLLSRLNRLIKETTEAYENMQFREA-- 63

Query: 743 QLTNFSNAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLIIWI---APILPF 798
                    L    ++++ D   Y       +R  +     +L R + +W    AP  P 
Sbjct: 64  ---------LKEGLYELQNDLDWY------RERGGAGMNKDLLRRFIEVWTRLLAPFAPH 108

Query: 799 TAEEAW 804
            AEE W
Sbjct: 109 LAEEIW 114


>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
           tRNA synthetases.  This domain is found in methionyl
           tRNA synthetases (MetRS), which belong to the class Ia
           aminoacyl tRNA synthetases. It lies C-terminal to the
           catalytic core domain, and recognizes and specifically
           binds to the tRNA anticodon (CAU). MetRS catalyzes the
           transfer of methionine to the 3'-end of its tRNA.
          Length = 129

 Score = 41.7 bits (99), Expect = 0.001
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 705 PSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS---NAELSSFYFDIRK 761
           P    +   ++ +L    EL + V EA +   F++ + ++   +   N      Y D   
Sbjct: 29  PEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANK-----YIDETA 83

Query: 762 D-SLYCDSPSSLKRLSSIAVIRILC---RHLIIWIAPILPFTAEEAW 804
              L  +     +RL+   V+ +L    R L I ++P +P TAE+  
Sbjct: 84  PWKLAKEE--DPERLA--TVLYVLLELLRILAILLSPFMPETAEKIL 126


>gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K).  This family
           includes only lysyl tRNA synthetases from prokaryotes.
          Length = 355

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLR 687
            + G KMS SKGN +  EE +  +  + LR+          +RL  ++I   +D Y +L 
Sbjct: 273 LKGGGKMSSSKGNGITIEEWLEYAPPESLRFLMFRVKPKKAKRLDFDVIPKLVDEYDRLE 332

Query: 688 N 688
            
Sbjct: 333 R 333


>gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 586

 Score = 38.8 bits (90), Expect = 0.008
 Identities = 27/148 (18%), Positives = 55/148 (37%)

Query: 605 LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSD 664
           + +S A    + + +   H   +  NGEKMSKS  N +  +E + +     LR   +   
Sbjct: 277 IAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQ 336

Query: 665 YHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTEL 724
           +        + ++  +   + L N    +  +L      E        L +      T +
Sbjct: 337 WRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAV 396

Query: 725 DQVVREAYDAFNFKEVVRQLTNFSNAEL 752
              + + +D     E +R+L +  NA +
Sbjct: 397 HAALCDNFDTPRVMEAIRELVSQGNAYI 424


>gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R).  Other tRNA
           synthetase sub-families are too dissimilar to be
           included. This family includes only arginyl tRNA
           synthetase.
          Length = 345

 Score = 36.7 bits (85), Expect = 0.034
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 589 VYLEGSDQHRGWFQHSLLESCATR--GSTP-FTSLITHGFSVD--ENGEKMSKSKGNVVF 643
           +Y+ G+DQH     H      A    G  P    ++  GF V   ++G++MS   GNVV 
Sbjct: 234 IYVLGADQH----GHIQRLFAAAAALGYDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVT 289

Query: 644 PEEIISESGADVLRYWAVNSDYHDDQ 669
            ++++ E+    +     N D   D+
Sbjct: 290 LDDLLDEALERAMDIKEKNRDLTADE 315


>gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
           ribosomal structure and biogenesis].
          Length = 521

 Score = 35.6 bits (82), Expect = 0.062
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRYW--AVNSDYHDDQRLGKNIIQTNIDTYRK 685
            + G KMS SKGNV+   + +  +  +VLRY       + H D      I++  +D Y +
Sbjct: 272 LKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILK-LVDEYDR 330

Query: 686 LRN 688
           L  
Sbjct: 331 LER 333


>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of  class I
           lysyl tRNA synthetase.  Class I lysyl tRNA synthetase
           (LysRS) catalytic core domain. This class I enzyme is a
           monomer which aminoacylates the 2'-OH of the nucleotide
           at the 3' of the appropriate tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding. The class I LysRS is found only in archaea and
           some bacteria and has evolved separately from class II
           LysRS, as the two do not share structural or sequence
           similarity.
          Length = 353

 Score = 33.8 bits (78), Expect = 0.25
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRY 658
            + G KMS SKGNV+ P + +  +  +VLRY
Sbjct: 270 LKGGGKMSSSKGNVITPSDWLEVAPPEVLRY 300



 Score = 28.4 bits (64), Expect = 8.8
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 18/93 (19%)

Query: 44  DKIRESAVGRKNFTLHDG--PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWD 101
           +KI E   G++ + +  G  P   +GHIHIG+    I  D++ R+ +   F    +  WD
Sbjct: 9   EKIIEERKGKEKYVVASGISP---SGHIHIGNFREVITADLVARALRDLGFEVRLIYSWD 65

Query: 102 CH--------GLPIEWKVENEYLAKGKKKDDIP 126
            +         +P  ++   +Y+  G     +P
Sbjct: 66  DYDRLRKVPPNVPESYE---QYI--GMPLSSVP 93


>gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
           domain.  This family includes only cysteinyl tRNA
           synthetases.
          Length = 301

 Score = 33.5 bits (77), Expect = 0.32
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRY 658
           +S A            H   +   GEKMSKS GN +   +++      +LRY
Sbjct: 228 QSEA-AFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRY 278


>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
           synthetase.  Tyrosinyl-tRNA synthetase (TyrRS) catalytic
           core domain. TyrRS is a homodimer which attaches Tyr to
           the appropriate tRNA. TyrRS is a class I tRNA
           synthetases, so it aminoacylates the 2'-OH of the
           nucleotide at the 3' end of the tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formationof the enzyme bound
           aminoacyl-adenylate. It contains the class I
           characteristic HIGH and KMSKS motifs, which are involved
           in ATP binding.
          Length = 269

 Score = 33.0 bits (76), Expect = 0.42
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 587 ADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVF--- 643
            D+ L GSDQ       +L      +        +T       +G KMSKS+GN ++   
Sbjct: 152 VDLQLGGSDQ---RGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDPV 208

Query: 644 ---PEE----IISESGADVLRY 658
              P +    I +    DVL +
Sbjct: 209 LDSPYDVYQKIRNAFDPDVLEF 230


>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 577

 Score = 30.2 bits (68), Expect = 2.6
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 582 KLAWPAD--VYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITH---GFSVDENGEKMSK 636
           K     D  +Y+ G+DQH G F+  L       G  P   ++ H   G      G KMS 
Sbjct: 329 KFERGFDKLIYVLGADQH-GHFKQ-LKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMST 386

Query: 637 SKGNVVFPEEIISESG 652
             GNVV  ++++ E+G
Sbjct: 387 RAGNVVTLDDLLDEAG 402



 Score = 29.4 bits (66), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 66  NGHIHIGHALNKILKDVIVRSFQMRNFN 93
            G +HIGH  N I+ D + R  +   ++
Sbjct: 129 TGPLHIGHLRNAIIGDSLARILEFLGYD 156


>gnl|CDD|36192 KOG0974, KOG0974, KOG0974, WD-repeat protein WDR6, WD repeat
           superfamily [General function prediction only].
          Length = 967

 Score = 29.9 bits (67), Expect = 3.2
 Identities = 49/294 (16%), Positives = 90/294 (30%), Gaps = 41/294 (13%)

Query: 641 VVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLG----- 695
              P  II+       R W VN               T ++ Y +      W +      
Sbjct: 225 CFLPNRIITVGEDCTCRVWGVNG--------------TQLEVYDEHSGKGIWKIAVPIGV 270

Query: 696 MLAHDTGNEPSLADMPALEQLMLHRLTE----LDQVVREAYDAFNFKEVVRQLTNFSNAE 751
           ++    GN+ +L  +  L    L    E    L  +V+   D F   + +    N     
Sbjct: 271 IIKVTGGNDSTLK-LWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKL 329

Query: 752 LSSFYFDIRKDS--LYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLN- 808
                   + +   +  +S S L+ + S      +    +     I       AW     
Sbjct: 330 SIL---GNKGEKELITFESDSMLRIIFSCTNDDWV--AHMSNKGDIY-----VAWHQNTI 379

Query: 809 -PEAVSVHLEL--FPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETA 865
                S+H +L   PI  +   +   SK     +Q+R  ++ +LE      +I S  E  
Sbjct: 380 VITTSSLHRKLSANPISQVCEASYVASKLIDGSIQVRN-LSGSLESFADVLNIRSLKEFR 438

Query: 866 PTLYITDSSLISNIEGENLAEICITSDITIVHSNGPTDAFRLSDVPNVSVQCLK 919
                    L S +E   +       ++ + + + P D   LS   +  +    
Sbjct: 439 LPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLSRSHELDTGS 492


>gnl|CDD|31633 COG1444, COG1444, Predicted P-loop ATPase fused to an
           acetyltransferase [General function prediction only].
          Length = 758

 Score = 29.5 bits (66), Expect = 4.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 899 NGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSAR 947
           N P D  RL D P+  +  L+A   K    W+V ++ GL     D+   
Sbjct: 456 NSPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLG 504


>gnl|CDD|146587 pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase.  Thought
           to catalyse 2-phosphosulpholactate = sulpholactate +
           phosphate. Probable magnesium cofactor. Involved in the
           second step of coenzyme M biosynthesis. Inhibited by
           vanadate in Methanococcus jannaschii. Also known as the
           ComB family.
          Length = 231

 Score = 29.5 bits (67), Expect = 4.6
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 393 GARVLDDAGEKGNANEVVIAALINACAILNR 423
           G R L  A    NA  V+I + +NA A+   
Sbjct: 100 GTRALKRAR---NAKRVLIGSFVNASAVAEY 127


>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
          synthetase.  Glutaminyl-tRNA synthetase (GlnRS)
          cataytic core domain. These enzymes attach Gln to the
          appropriate tRNA. Like other class I tRNA synthetases,
          they aminoacylate the 2'-OH of the nucleotide at the 3'
          end of the tRNA. The core domain is based on the
          Rossman fold and is responsible for the ATP-dependent
          formation of the enzyme bound aminoacyl-adenylate.
          GlnRS contains the characteristic class I HIGH and
          KMSKS motifs, which are involved in ATP binding. These
          enzymes function as monomers. Archaea and most bacteria
          lack GlnRS. In these organisms, the
          "non-discriminating" form of GluRS aminoacylates both
          tRNA(Glu) and tRNA(Gln) with Glu, which is converted to
          Gln when appropriate by a transamidation enzyme.
          Length = 238

 Score = 29.1 bits (66), Expect = 5.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 62 PPYANGHIHIGHA 74
          PP  NG++HIGHA
Sbjct: 7  PPEPNGYLHIGHA 19


>gnl|CDD|30511 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 401

 Score = 28.7 bits (64), Expect = 9.3
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 587 ADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVF 643
            D+ L GSDQ   W           R        +T       +G+KM KS+G  V+
Sbjct: 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVW 234


>gnl|CDD|36362 KOG1147, KOG1147, KOG1147, Glutamyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 712

 Score = 28.4 bits (63), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 62  PPYANGHIHIGHALNKILKDVIVRSFQ 88
           PP  +G++HIGHA   +L     +++Q
Sbjct: 206 PPEPSGYLHIGHAKAALLNQYFAQAYQ 232


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,874,913
Number of extensions: 636280
Number of successful extensions: 1467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 71
Length of query: 963
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 860
Effective length of database: 4,038,010
Effective search space: 3472688600
Effective search space used: 3472688600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)