Query gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs 7 out of 9
Neff 2.7
Searched_HMMs 33803
Date Wed Jun 1 12:59:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780446.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2yzy_A Putative uncharacteriz 29.5 41 0.0012 15.3 2.6 14 30-43 79-92 (92)
2 >1d0q_A DNA primase; zinc-bind 24.3 39 0.0012 15.4 1.7 13 154-166 4-16 (56)
3 >3feo_A MBT domain-containing 20.2 64 0.0019 14.2 3.2 50 13-62 38-88 (94)
4 >1xfj_A Conserved hypothetical 19.1 68 0.002 14.0 2.2 82 22-115 74-157 (224)
5 >3l6w_A Hemocyanin 1; cupredox 17.3 53 0.0016 14.7 1.1 81 85-169 39-133 (200)
6 >3h6z_A Polycomb protein SFMBT 14.4 89 0.0026 13.3 2.6 48 15-62 31-80 (86)
7 >1bm9_A RTP, TER, replication 13.9 26 0.00076 16.6 -1.2 13 52-64 43-55 (122)
8 >3elq_A Arylsulfate sulfotrans 12.8 99 0.0029 13.1 4.3 77 11-87 9-100 (201)
9 >2j04_A TAU60, YPL007P, hypoth 12.6 1E+02 0.003 13.0 1.7 43 20-62 108-174 (231)
10 >2gel_A Putative GRAM negative 11.2 66 0.0019 14.1 0.2 66 98-170 37-114 (135)
No 1
>>2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 1.60A {Thermus thermophilus HB8} (A:1-20,A:102-173)
Probab=29.49 E-value=41 Score=15.32 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.5
Q ss_pred EEEECCCCCEEEEE
Q ss_conf 99987998875454
Q gi|254780446|r 30 LVVFDSNKEFVAEL 43 (171)
Q Consensus 30 ~V~~D~~~~~laeL 43 (171)
++++|+++|++|+|
T Consensus 79 ~~~~D~~~KVLAdL 92 (92)
T 2yzy_A 79 FVFLDEKGKVLADL 92 (92)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEE
T ss_conf 34771799899999
No 2
>>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:1-22,A:70-103)
Probab=24.27 E-value=39 Score=15.44 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 1377799999986
Q gi|254780446|r 154 LLDDRKINEIQNN 166 (171)
Q Consensus 154 LL~e~~i~~i~~~ 166 (171)
++|+++|++||+.
T Consensus 4 ~ip~e~i~~irr~ 16 (56)
T 1d0q_A 4 RIPEETIEAIRRG 16 (56)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 8898999999985
No 3
>>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, SGC, alternative splicing, metal-binding, nucleus; 2.50A {Homo sapiens} (A:232-325)
Probab=20.17 E-value=64 Score=14.18 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=31.6
Q ss_pred EEEEEEEEECCEEEEE-EEEEECCCCCEEEEEECEEECCCCCEEEECCCCC
Q ss_conf 6997311102001024-8999879988754541302447786732225800
Q gi|254780446|r 13 TIVLSQLTIGLFFAHR-LLVVFDSNKEFVAELDGLVVNKDGKFKPIGYLPS 62 (171)
Q Consensus 13 ~I~~~qL~i~~~fgH~-~~V~~D~~~~~laeL~GLaTsk~G~~~pIGY~~s 62 (171)
.-..+.-+|.-..|++ ++|-.|.....-.+-+=..--.+-.+-|||+-..
T Consensus 38 ~~~i~vAtV~~v~g~r~l~v~~DG~~~~d~~~dfw~~~~S~~I~PvGWc~~ 88 (94)
T 3feo_A 38 LSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEI 88 (94)
T ss_dssp EEEEEEEEEEEECGGGEEEEEETTCCC-CCTTCEEEETTCTTEECTTHHHH
T ss_pred CCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 887898999676368889999489866667677788789998437705887
No 4
>>1xfj_A Conserved hypothetical protein; structural genomics, protein structure initiative (PSI), alpha-beta-BETA-alpha, two-domain structure; 1.75A {Caulobacter vibrioides} (A:1-168,A:206-261)
Probab=19.07 E-value=68 Score=14.03 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=46.7
Q ss_pred CCEEEEEEEEEECCCCCEEEEEECEEECCCCCEEEECCCCCCCEEEEECCCCHHCCCCCCEEE--EEECCHHHHHHHHHH
Q ss_conf 200102489998799887545413024477867322258000177763045010133345069--984546898876798
Q gi|254780446|r 22 GLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFKPIGYLPSDRLKVFEFKYPCLYKEDQEQVV--LCSSSEECVMSRWNA 99 (171)
Q Consensus 22 ~~~fgH~~~V~~D~~~~~laeL~GLaTsk~G~~~pIGY~~sd~Lk~~~~~~~~~y~~sq~q~i--v~~~~~e~~~~rwn~ 99 (171)
--+-|.+++++.+......-+-|||.|++.|-+..|=| +|-+-++ +-+.+...| +-.|-+--+- +.
T Consensus 74 ~QvHg~~V~~v~~~~~~~~~~aDgLiT~~~~v~L~v~t--ADCvPIl-------l~D~~~~vIaavHAGWrGt~~---~I 141 (224)
T 1xfj_A 74 YQIHSTIAIVADGSWGDARPEGDAVVSKTPGVICGAXA--ADCAPVL-------LVDPEARIVAAAHAGWRGALD---GV 141 (224)
T ss_dssp BCCSCCCEEECSSCCTTCCCBCSEEEECSTTCEEEEEE--SSSEEEE-------EEETTTTEEEEEEECHHHHHH---TH
T ss_pred EECCCCEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEE--CHHHHHH-------EEECCCCEEEEECCCCHHHHC---CC
T ss_conf 30455314898323566665654010046761467762--1002131-------120365528884121322440---66
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9988988873689987
Q gi|254780446|r 100 AVHTKEILNEKNMPYP 115 (171)
Q Consensus 100 ~~~~~~~IN~~nL~YP 115 (171)
..++.+.+.+.+..-.
T Consensus 142 v~~~I~~~~~~g~~~~ 157 (224)
T 1xfj_A 142 VQSAVDRXVELGASPA 157 (224)
T ss_dssp HHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHHCCCCCH
T ss_conf 1267899988299801
No 5
>>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} (A:292-491)
Probab=17.32 E-value=53 Score=14.70 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=51.9
Q ss_pred EEECCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC------------C
Q ss_conf 98454689887679--899889888736899872123445126899999983887457886541676------------6
Q gi|254780446|r 85 LCSSSEECVMSRWN--AAVHTKEILNEKNMPYPFLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPY------------Q 150 (171)
Q Consensus 85 v~~~~~e~~~~rwn--~~~~~~~~IN~~nL~YPi~Gl~~NSNSva~Tl~r~M~l~~~~ip~~r~~Pg------------~ 150 (171)
|.+|.+|---+ |. --+++++++++++|.-.-|-+...=.++-+|-+--=-|+.|-+= ..|+ -
T Consensus 39 VLGG~~EMpW~-FdRlykydIT~~l~~l~l~~d~f~i~~~i~~vnGt~l~s~~lp~Ptii---~~P~~~~~~~~~~~VRK 114 (200)
T 3l6w_A 39 ILGGAKEMPWA-YERLYRFDITETVHNLNLTDDHVKFRFDLKKYDHTELDASVLPAPIIV---RRPNNAVFDIIEIPIGK 114 (200)
T ss_pred EECCCCCCCCC-CCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEE---ECCCCCCCCCCCCCCCC
T ss_conf 80487567634-474110017999998499976648999999418957865458998089---72797766666513456
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 4101377799999986641
Q gi|254780446|r 151 GIILLDDRKINEIQNNWIR 169 (171)
Q Consensus 151 g~~LL~e~~i~~i~~~~~~ 169 (171)
+...|++++++.+|++.-+
T Consensus 115 nV~~Lt~~Ev~sLr~Al~~ 133 (200)
T 3l6w_A 115 DVNLPPKVVVKRGTKIMFM 133 (200)
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 8889989998689888510
No 6
>>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, alternative splicing, chromatin regulator, DNA-binding, metal-binding, nucleus, repressor; HET: MLZ SUC; 2.80A {Drosophila melanogaster} (A:254-339)
Probab=14.42 E-value=89 Score=13.35 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=27.3
Q ss_pred EEEEEEECCEEE-EEEEEEECCCCCEEEEEECEEEC-CCCCEEEECCCCC
Q ss_conf 973111020010-24899987998875454130244-7786732225800
Q gi|254780446|r 15 VLSQLTIGLFFA-HRLLVVFDSNKEFVAELDGLVVN-KDGKFKPIGYLPS 62 (171)
Q Consensus 15 ~~~qL~i~~~fg-H~~~V~~D~~~~~laeL~GLaTs-k~G~~~pIGY~~s 62 (171)
..+.-+|.-..| +.++|-.|.....-.+.+.--.+ .+-.+-|||+-..
T Consensus 31 ~i~vAtV~~v~g~~~~~v~~Dg~~~~~d~~~~fw~~~dS~~i~PVGWc~~ 80 (86)
T 3h6z_A 31 SICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSV 80 (86)
T ss_dssp EEEEEEEEEECSTTEEEEEETTSCTTCTTTTCEEEETTCTTEECTTHHHH
T ss_pred CEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 57889993654788899995688645676665786369997236706986
No 7
>>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} (A:)
Probab=13.95 E-value=26 Score=16.55 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.5
Q ss_pred CCEEEECCCCCCC
Q ss_conf 8673222580001
Q gi|254780446|r 52 GKFKPIGYLPSDR 64 (171)
Q Consensus 52 G~~~pIGY~~sd~ 64 (171)
-+++|.||-|.|+
T Consensus 43 ~eFk~~Gy~P~hs 55 (122)
T 1bm9_A 43 SEFKEIGFKPNHT 55 (122)
T ss_dssp HHHTTTTCCCCHH
T ss_pred HHHHHCCCCCCHH
T ss_conf 9878538899778
No 8
>>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* (A:199-399)
Probab=12.84 E-value=99 Score=13.07 Aligned_cols=77 Identities=9% Similarity=0.004 Sum_probs=44.9
Q ss_pred CCEEEEEEEEEC--CEEEEEEEEEECCCCCEEEEE----------ECEEECCCCCEEEECCCCC---CCEEEEECCCCHH
Q ss_conf 406997311102--001024899987998875454----------1302447786732225800---0177763045010
Q gi|254780446|r 11 NFTIVLSQLTIG--LFFAHRLLVVFDSNKEFVAEL----------DGLVVNKDGKFKPIGYLPS---DRLKVFEFKYPCL 75 (171)
Q Consensus 11 ~y~I~~~qL~i~--~~fgH~~~V~~D~~~~~laeL----------~GLaTsk~G~~~pIGY~~s---d~Lk~~~~~~~~~ 75 (171)
.+-+...+.+=+ ++.+-..++..|++|+++|+. |..+...+|.+.-.|+.++ ..-+.........
T Consensus 9 g~~~~~~~~~~g~~~~~~~~~i~k~d~~G~~~W~~~~~~~~~~~~~~v~~~~dG~~lv~g~~~~~~~~~~~~~~~~~~~i 88 (201)
T 3elq_A 9 GYLMGIRETPRGTFTAVQGQHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHI 88 (201)
T ss_dssp SCCEEEEECTTSCEEEEEBTEEEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEE
T ss_pred CEEEEEEECCCCCEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCEECCEE
T ss_conf 52877775688755650276477735889779999889876655655168799989999972445444577786657799
Q ss_pred CCCCCCEEEEEE
Q ss_conf 133345069984
Q gi|254780446|r 76 YKEDQEQVVLCS 87 (171)
Q Consensus 76 y~~sq~q~iv~~ 87 (171)
++-+-.-.++..
T Consensus 89 ~~~d~~G~i~w~ 100 (201)
T 3elq_A 89 LEVDKSGRVVDV 100 (201)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCCEEEE
T ss_conf 999999978999
No 9
>>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} (A:1-126,A:305-409)
Probab=12.56 E-value=1e+02 Score=13.02 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=29.1
Q ss_pred EECCEEEEEEEEEECCCCCEEE------------------------EEECEEECCCCCEEEECCCCC
Q ss_conf 1020010248999879988754------------------------541302447786732225800
Q gi|254780446|r 20 TIGLFFAHRLLVVFDSNKEFVA------------------------ELDGLVVNKDGKFKPIGYLPS 62 (171)
Q Consensus 20 ~i~~~fgH~~~V~~D~~~~~la------------------------eL~GLaTsk~G~~~pIGY~~s 62 (171)
++...-+..++-..|+.++.++ -+||+|+|.||--.+|-|.-+
T Consensus 108 Nvli~~dn~~l~~ld~~~~iIsP~lekKfkKWst~~NEf~kYet~l~I~GvalSpDGysvAI~Y~iE 174 (231)
T 2j04_A 108 NVSVFKDNKMLTNLDSKGNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDME 174 (231)
T ss_dssp CEEEEETTEEEEECCCSSCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEEE
T ss_pred CEEEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEE
T ss_conf 3699966813553341100679999977421111565335744168999652389986899999852
No 10
>>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A (A:1-93,A:190-231)
Probab=11.24 E-value=66 Score=14.13 Aligned_cols=66 Identities=12% Similarity=-0.000 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCCC----------CCCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 989988988873689987----------2123--4451268999999838874578865416766410137779999998
Q gi|254780446|r 98 NAAVHTKEILNEKNMPYP----------FLGI--GKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQN 165 (171)
Q Consensus 98 n~~~~~~~~IN~~nL~YP----------i~Gl--~~NSNSva~Tl~r~M~l~~~~ip~~r~~Pg~g~~LL~e~~i~~i~~ 165 (171)
.+....-+.+.+.++.+. ++.+ -+-.=+++.+|....+++-.+++++ .++++..+-+-.|+
T Consensus 37 ~L~~~I~~lL~~a~i~~~dId~Iavs~GPGSFTGlRVgla~AkgLa~~~~iPligvs~~-------~~~~~~~~~~~~~~ 109 (135)
T 2gel_A 37 RILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSAA-------EDMLPIASQKLAAG 109 (135)
T ss_dssp HHHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHHHHHHHHHHHHHHHTTTCCEEEECCH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH-------HHHHHHHHHHHHCC
T ss_conf 99999999985500221230443000356642337788999999998638987640599-------99999999999859
Q ss_pred HHHHC
Q ss_conf 66411
Q gi|254780446|r 166 NWIRC 170 (171)
Q Consensus 166 ~~~~~ 170 (171)
.|++.
T Consensus 110 ~~~~~ 114 (135)
T 2gel_A 110 ETVAV 114 (135)
T ss_dssp CCBCG
T ss_pred CCCCC
T ss_conf 99881
Done!