Query gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs 7 out of 9
Neff 2.7
Searched_HMMs 23785
Date Mon May 30 10:50:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780446.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1khi_A HEX1; membrane sealing, 22.6 30 0.0013 15.3 1.6 46 4-58 25-71 (176)
2 1g0d_A Protein-glutamine gamma 18.9 44 0.0018 14.3 1.8 14 124-137 276-289 (695)
3 1ex0_A Coagulation factor XIII 17.2 50 0.0021 13.9 1.8 14 124-137 318-331 (731)
4 2q3z_A Transglutaminase 2; tra 16.3 56 0.0023 13.6 1.9 13 125-137 282-294 (687)
5 1vjj_A Protein-glutamine gluta 15.5 59 0.0025 13.5 1.9 13 125-137 277-289 (692)
6 1bm9_A RTP, TER, replication t 14.2 17 0.00073 16.6 -1.2 13 52-64 43-55 (122)
7 1cmx_A Protein (ubiquitin YUH1 13.1 68 0.0029 13.1 1.6 10 140-149 188-197 (235)
8 2gdt_A Leader protein; P65 hom 11.8 57 0.0024 13.6 0.8 39 10-55 55-93 (116)
9 1xdn_A RNA editing ligase MP52 10.6 68 0.0029 13.1 0.9 75 46-142 129-216 (277)
10 3hn5_A Putative exported prote 10.1 86 0.0036 12.5 2.9 61 32-94 2-70 (215)
No 1
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=22.60 E-value=30 Score=15.26 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=31.4
Q ss_pred CCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCEEEEEECEEEC-CCCCEEEEC
Q ss_conf 5577777406997311102001024899987998875454130244-778673222
Q gi|254780446|r 4 AESDTSQNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVN-KDGKFKPIG 58 (171)
Q Consensus 4 ~~~d~~~~y~I~~~qL~i~~~fgH~~~V~~D~~~~~laeL~GLaTs-k~G~~~pIG 58 (171)
.++-.|.+|.+..++|+.++ ++++++.-= .+--++|| |+|+---.+
T Consensus 25 g~~gAS~T~p~q~~~LrkGg-----yv~Ikg~PC----KVveisTS~KtGKHGhak 71 (176)
T 1khi_A 25 GTGSASQTVTIPCHHIRLGD-----ILILQGRPC----QVIRISTSAATGQHRYLG 71 (176)
T ss_dssp --CCSCCEEEEEGGGCCTTC-----EEEETTEEE----EEEEEEECTTTCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCC-----EEEECCCCE----EEEEEECCCCCCCCCEEE
T ss_conf 87787640643542111088-----999988106----899886278898454688
No 2
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=18.87 E-value=44 Score=14.28 Aligned_cols=14 Identities=43% Similarity=0.990 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 26899999983887
Q gi|254780446|r 124 NSVASTLIRCMGLK 137 (171)
Q Consensus 124 NSva~Tl~r~M~l~ 137 (171)
-.|+-|++||+||+
T Consensus 276 AgV~~TVlRcLGIP 289 (695)
T 1g0d_A 276 AAVACTVLRCLGIP 289 (695)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCC
T ss_conf 77788899863887
No 3
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=17.18 E-value=50 Score=13.91 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 26899999983887
Q gi|254780446|r 124 NSVASTLIRCMGLK 137 (171)
Q Consensus 124 NSva~Tl~r~M~l~ 137 (171)
-.|+-|++||+||+
T Consensus 318 AgV~~TvlRcLGIP 331 (731)
T 1ex0_A 318 AGVFNTFLRCLGIP 331 (731)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCC
T ss_conf 87777766226886
No 4
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=16.33 E-value=56 Score=13.65 Aligned_cols=13 Identities=46% Similarity=1.073 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6899999983887
Q gi|254780446|r 125 SVASTLIRCMGLK 137 (171)
Q Consensus 125 Sva~Tl~r~M~l~ 137 (171)
.|+-|++||+||+
T Consensus 282 gV~~TVlRcLGIP 294 (687)
T 2q3z_A 282 AVACTVLRCLGIP 294 (687)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCC
T ss_conf 2110111226885
No 5
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=15.53 E-value=59 Score=13.52 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.8
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6899999983887
Q gi|254780446|r 125 SVASTLIRCMGLK 137 (171)
Q Consensus 125 Sva~Tl~r~M~l~ 137 (171)
.|+-|++||+||+
T Consensus 277 gv~~TvlR~LGIP 289 (692)
T 1vjj_A 277 GTLNTALRSLGIP 289 (692)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCC
T ss_conf 7788888744786
No 6
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=14.24 E-value=17 Score=16.63 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.4
Q ss_pred CCEEEECCCCCCC
Q ss_conf 8673222580001
Q gi|254780446|r 52 GKFKPIGYLPSDR 64 (171)
Q Consensus 52 G~~~pIGY~~sd~ 64 (171)
-+++|.||-|.|+
T Consensus 43 ~eFk~~Gy~P~hs 55 (122)
T 1bm9_A 43 SEFKEIGFKPNHT 55 (122)
T ss_dssp HHHTTTTCCCCHH
T ss_pred HHHHHCCCCCCHH
T ss_conf 9867538899778
No 7
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=13.11 E-value=68 Score=13.13 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q ss_conf 7886541676
Q gi|254780446|r 140 AIPNAKIAPY 149 (171)
Q Consensus 140 ~ip~~r~~Pg 149 (171)
+|.+|...|.
T Consensus 188 Pi~hG~~~~~ 197 (235)
T 1cmx_A 188 PLYLGKSDPT 197 (235)
T ss_dssp CEEEEECCTT
T ss_pred CEECCCCCCC
T ss_conf 9464677984
No 8
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=11.81 E-value=57 Score=13.58 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCCEEEEEEEEECCEEEEEEEEEECCCCCEEEEEECEEECCCCCEE
Q ss_conf 7406997311102001024899987998875454130244778673
Q gi|254780446|r 10 QNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFK 55 (171)
Q Consensus 10 ~~y~I~~~qL~i~~~fgH~~~V~~D~~~~~laeL~GLaTsk~G~~~ 55 (171)
|-|-.+++.=...-+-||-. -++++|+||.--..+|+..
T Consensus 55 qpyif~kr~da~~~~hgh~~-------velvae~dgiqygrsg~~l 93 (116)
T 2gdt_A 55 QPYVFIKRSDALSTNHGHKV-------VELVAEMDGIQYGRSGITL 93 (116)
T ss_dssp SCEEEEECCSSCCCCCSSCC-------CEEEEESSCTTTTSSSSCC
T ss_pred CCEEEEEECCCCCCCCCCEE-------EEEEEHHCCCEECCCCCEE
T ss_conf 86799883245548888377-------6443111461405676445
No 9
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=10.58 E-value=68 Score=13.13 Aligned_cols=75 Identities=23% Similarity=0.190 Sum_probs=39.7
Q ss_pred EEECCCCCEEE-----------ECCCCCCCEEEEECCCCHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 02447786732-----------22580001777630450101333450699845468988767989988988873-6899
Q gi|254780446|r 46 LVVNKDGKFKP-----------IGYLPSDRLKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVHTKEILNE-KNMP 113 (171)
Q Consensus 46 LaTsk~G~~~p-----------IGY~~sd~Lk~~~~~~~~~y~~sq~q~iv~~~~~e~~~~rwn~~~~~~~~IN~-~nL~ 113 (171)
..+.++|+..| |.|.|.-.-=||-+.+ ......-..+|+...+.++..-+ .+|+
T Consensus 129 ~~~~~~G~~~~~~~~~iQk~v~~~Y~pd~~FyaFDI~~--------------~~~~~~~~~~~l~~d~~~e~~~~~~gl~ 194 (277)
T 1xdn_A 129 WCTLPNGKKFPIAGVQIQREPFPQYSPELHFFAFDIKY--------------SVSGAEEDFVLLGYDEFVEFSSKVPNLL 194 (277)
T ss_dssp EEECTTSCEEEGGGCCSCCCSSCCCEEEEEEEEEEEEE--------------ESSCCGGGEEECCHHHHHHHHHTSTTCE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEEE--------------ECCCCCCEEEEECHHHHHHHHHHHCCCC
T ss_conf 44344675234432000135654558764448999996--------------1377642257603789999887607942
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 87-212344512689999998388745788
Q gi|254780446|r 114 YP-FLGIGKNSNSVASTLIRCMGLKELAIP 142 (171)
Q Consensus 114 YP-i~Gl~~NSNSva~Tl~r~M~l~~~~ip 142 (171)
|- .++ -+||-+||+++...+.
T Consensus 195 ya~~L~--------rGtl~E~l~~dv~~f~ 216 (277)
T 1xdn_A 195 YARALV--------RGTLDECLAFDVENFM 216 (277)
T ss_dssp ECCCSE--------EESHHHHHTCCGGGCB
T ss_pred CCHHHC--------CCCHHHHHHCCCCCCC
T ss_conf 112431--------2469998606400166
No 10
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=10.12 E-value=86 Score=12.54 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=35.7
Q ss_pred EECCCCCEEEEEECEEECCCCCEEEECCCCCCCEEEEECCCCH------HCCC--CCCEEEEEECCHHHHH
Q ss_conf 9879988754541302447786732225800017776304501------0133--3450699845468988
Q gi|254780446|r 32 VFDSNKEFVAELDGLVVNKDGKFKPIGYLPSDRLKVFEFKYPC------LYKE--DQEQVVLCSSSEECVM 94 (171)
Q Consensus 32 ~~D~~~~~laeL~GLaTsk~G~~~pIGY~~sd~Lk~~~~~~~~------~y~~--sq~q~iv~~~~~e~~~ 94 (171)
.||+.-.+=+.+.|-.++ +||+.+.-....-+++.|+..+.. ..+. ++.. -+|.|.+..+.
T Consensus 2 ~kDNyd~P~s~~~G~i~~-tgE~i~~~~~~gv~i~l~e~gy~~~~~~~~~~~~DGtf~~-~lF~G~Ykl~~ 70 (215)
T 3hn5_A 2 MKDNYDAPESMLTGRVMY-NGEALQLRGNEAVQLQLYQHGYAKHDPINVYVNQDGMYSA-NLFDGEYQMIT 70 (215)
T ss_dssp --------CEEEEEEEEE-TTEECCCCCTTSCEEEEESSCGGGCCCEEEEBCTTSEEEE-EECSEEEEEEE
T ss_pred CCCCCCCCCCEEEEEEEE-CCCEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCEEE-EEECCEEEEEE
T ss_conf 877777887457899988-9977112068834999997455778976889758985764-37665168997
Done!