RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780446|ref|YP_003064859.1| hypothetical protein
CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>gnl|CDD|177488 PHA02774, PHA02774, E1; Provisional.
          Length = 613

 Score = 30.2 bits (69), Expect = 0.26
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 48  VNKDGKFKPIGYLPSDRLKVFEFKYPCLYKEDQEQV 83
           V  + ++K   YL S R+ VFEF  P    E+   V
Sbjct: 534 VKAEDRYK---YLHS-RITVFEFPNPFPLDENGNPV 565


>gnl|CDD|179266 PRK01261, aroD, 3-dehydroquinate dehydratase; Provisional.
          Length = 229

 Score = 29.5 bits (66), Expect = 0.43
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 1   MISAESDTSQNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFKPIGYL 60
           M+S  ++ S N   +L  +        ++   ++ NK+FV +L  +++ KD K+KPI ++
Sbjct: 123 MVSYHTNNSDNMPAILDIMNEKNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFI 182

Query: 61  PSDR 64
           P  R
Sbjct: 183 PMGR 186


>gnl|CDD|163417 TIGR03705, poly_P_kin, polyphosphate kinase 1.  Members of this
           protein family are the enzyme polyphosphate kinase 1
           (PPK1). This family is found in many prokaryotes and
           also in Dictyostelium. Sequences in the seed alignment
           were taken from prokaryotic consecutive two-gene pairs
           in which the other gene encodes an exopolyphosphatase.
           It synthesizes polyphosphate from the terminal phosphate
           of ATP but not GTP, in contrast to PPK2.
          Length = 672

 Score = 26.7 bits (60), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 150 QGIILLDDRKINEIQNNWIRCY 171
           +GI +L+  ++ E Q  W+R Y
Sbjct: 101 EGIRVLNRDELTEAQREWLRKY 122


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score = 26.5 bits (59), Expect = 3.5
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 104 KEILNEKNMPYP------FLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDD 157
           KE L   N+  P       +G    S    STL+R +      +P  +I    G +L D 
Sbjct: 14  KEALKNINLDIPKNQVTALIG---PSGCGKSTLLRSLNRMNDLVPGVRIE---GKVLFDG 67

Query: 158 RKINEIQNN 166
           + I + + +
Sbjct: 68  QDIYDKKID 76


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 25.4 bits (55), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 128 STLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
           STL+RC       IP AK+   +G +L  DR I + Q N ++
Sbjct: 60  STLLRCFNRMNDLIPGAKV---EGRLLYRDRNIYDSQINSVK 98


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 25.3 bits (55), Expect = 8.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 16/67 (23%)

Query: 104 KEILNEKNMPYPFLGIGKN--------SNSVASTLIRCMGLKELAIPNAKIAPYQGIILL 155
           K+ LN+ N+P     I +N        S    ST +RC+      I N KI   +G +LL
Sbjct: 17  KQALNDINLP-----IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI---EGEVLL 68

Query: 156 DDRKINE 162
           D + I +
Sbjct: 69  DGKNIYD 75


>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional.
          Length = 342

 Score = 25.1 bits (55), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 40  VAELDGLVVNKDGKFKPIG 58
           VA++DG       + KPIG
Sbjct: 273 VAQVDGSAFFAGPQLKPIG 291


>gnl|CDD|152831 pfam12396, DUF3659, Protein of unknown function (DUF3659).  This
          domain family is found in bacteria and eukaryotes, and
          is approximately 70 amino acids in length.
          Length = 64

 Score = 25.1 bits (56), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 40 VAELDGLVVNKDGK 53
          ++ L+GL VNKDG 
Sbjct: 1  LSGLEGLTVNKDGN 14


>gnl|CDD|178055 PLN02436, PLN02436, cellulose synthase A.
          Length = 1094

 Score = 25.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)

Query: 137 KELAIPNAKIAPYQGIILL 155
           ++L IP++KI PY+ II+L
Sbjct: 275 RKLPIPSSKINPYRMIIIL 293


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0821    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,666,628
Number of extensions: 154974
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 11
Length of query: 171
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,114,577
Effective search space: 345624468
Effective search space used: 345624468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)