RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780446|ref|YP_003064859.1| hypothetical protein
CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian
          clock protein KaiA {Synechococcus elongatus [TaxId:
          32046]}
          Length = 135

 Score = 25.1 bits (55), Expect = 3.1
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 22/60 (36%)

Query: 15 VLSQLTIGLF-----FAHRL----------LVVFDSNKEFVA-------ELDGLVVNKDG 52
          VLSQ+ I ++                    L V +S +  +        ++D L++    
Sbjct: 1  VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAAN 60


>d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33
           {Thermotoga maritima [TaxId: 2336]}
          Length = 230

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 15/72 (20%)

Query: 98  NAAVHTKEILNEKNMPYPFLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDD 157
           N  V        K      +G G         ++R +GLK          P+   + L  
Sbjct: 89  NPKVELPLNEKGKFDVAGAIGQG------VLRVVRDLGLKT---------PFVSQVPLVS 133

Query: 158 RKINEIQNNWIR 169
            +I E    +  
Sbjct: 134 GEIAEDLAYYFA 145


>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 31  VVFDSNKEFVAELDGLVVN--KDGKFKPIGY 59
           V  D+N +   +   + +   + G  + IG 
Sbjct: 359 VSIDANGDRYGDFSVIAMTDVEAGTQEVIGD 389


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 614,869
Number of extensions: 26081
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)