RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) >d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]} Length = 135 Score = 25.1 bits (55), Expect = 3.1 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 22/60 (36%) Query: 15 VLSQLTIGLF-----FAHRL----------LVVFDSNKEFVA-------ELDGLVVNKDG 52 VLSQ+ I ++ L V +S + + ++D L++ Sbjct: 1 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAAN 60 >d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33 {Thermotoga maritima [TaxId: 2336]} Length = 230 Score = 24.9 bits (54), Expect = 3.6 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 15/72 (20%) Query: 98 NAAVHTKEILNEKNMPYPFLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDD 157 N V K +G G ++R +GLK P+ + L Sbjct: 89 NPKVELPLNEKGKFDVAGAIGQG------VLRVVRDLGLKT---------PFVSQVPLVS 133 Query: 158 RKINEIQNNWIR 169 +I E + Sbjct: 134 GEIAEDLAYYFA 145 >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Score = 24.3 bits (51), Expect = 5.4 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%) Query: 31 VVFDSNKEFVAELDGLVVN--KDGKFKPIGY 59 V D+N + + + + + G + IG Sbjct: 359 VSIDANGDRYGDFSVIAMTDVEAGTQEVIGD 389 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.137 0.408 Gapped Lambda K H 0.267 0.0566 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 614,869 Number of extensions: 26081 Number of successful extensions: 35 Number of sequences better than 10.0: 1 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 6 Length of query: 171 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 92 Effective length of database: 1,322,926 Effective search space: 121709192 Effective search space used: 121709192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.4 bits)