BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780446|ref|YP_003064859.1| hypothetical protein
CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 171

 Score =  355 bits (911), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MISAESDTSQNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFKPIGYL 60
           MISAESDTSQNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFKPIGYL
Sbjct: 1   MISAESDTSQNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFKPIGYL 60

Query: 61  PSDRLKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVHTKEILNEKNMPYPFLGIG 120
           PSDRLKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVHTKEILNEKNMPYPFLGIG
Sbjct: 61  PSDRLKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVHTKEILNEKNMPYPFLGIG 120

Query: 121 KNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIRCY 171
           KNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIRCY
Sbjct: 121 KNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIRCY 171


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 26.9 bits (58), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 12/48 (25%)

Query: 73  PCLYKEDQEQVVLCSSSE--ECVMSRWNAAVHTKEILNEKNMPYPFLG 118
           P L+ EDQ + V+C S E  + VMS            N KN+P  +LG
Sbjct: 663 PFLFGEDQGRYVVCISPENQDLVMSE----------ANNKNIPLRYLG 700


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 23.5 bits (49), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 21  IGLFFAHRLLVVFD-----SNKEFVAELDGLVVNKDGK 53
           +G    H LL + D      NK     ++G+VV KDG+
Sbjct: 779 MGEVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGR 816


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,062
Number of Sequences: 1233
Number of extensions: 4169
Number of successful extensions: 11
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 171
length of database: 328,796
effective HSP length: 68
effective length of query: 103
effective length of database: 244,952
effective search space: 25230056
effective search space used: 25230056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)