Query gi|254780447|ref|YP_003064860.1| hypothetical protein CLIBASIA_01660 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 04:32:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780447.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 11.0 58 0.0042 13.7 2.3 27 12-38 6-32 (45)
2 d1uura3 d.93.1.1 (A:577-707) S 8.1 15 0.0011 16.4 -2.0 28 9-36 2-34 (131)
3 d1i27a_ a.4.5.30 (A:) C-termin 8.0 57 0.0042 13.8 0.9 11 22-32 25-35 (73)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 4.8 1.2E+02 0.0089 12.2 2.4 25 21-45 7-31 (36)
5 d1e50b_ b.54.1.1 (B:) Core bin 4.6 37 0.0027 14.7 -1.7 12 9-20 104-115 (134)
6 d1tp6a_ d.17.4.12 (A:) Hypothe 3.9 1.5E+02 0.011 11.9 1.5 28 5-32 5-36 (126)
7 d1g4yb_ f.15.1.1 (B:) Small-co 3.5 1.4E+02 0.011 11.9 0.7 14 9-22 12-25 (82)
8 d3e9oa1 c.55.3.14 (A:1835-2087 2.9 1.9E+02 0.014 11.4 1.0 26 12-44 156-181 (253)
9 d1b4ua_ a.88.1.1 (A:) LigA sub 1.7 2.9E+02 0.021 10.5 1.1 23 11-33 69-91 (132)
10 d1musa_ c.55.3.4 (A:) Transpos 1.6 3E+02 0.022 10.4 0.9 11 10-20 443-453 (474)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=10.98 E-value=58 Score=13.74 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 442225444003999974202379999
Q gi|254780447|r 12 VLWEGWLSIGVTTDLLSKFAAGSFLFI 38 (47)
Q Consensus 12 vlwegwlsigvttdllskfaagsflfi 38 (47)
-||.|++.---+--+..-+++|-|-+|
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 776101789999999999999887631
No 2
>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}
Probab=8.07 E-value=15 Score=16.43 Aligned_cols=28 Identities=32% Similarity=0.700 Sum_probs=16.1
Q ss_pred HHHHHH-HHH----HHHHHHHHHHHHHCCHHHH
Q ss_conf 246442-225----4440039999742023799
Q gi|254780447|r 9 HVNVLW-EGW----LSIGVTTDLLSKFAAGSFL 36 (47)
Q Consensus 9 hvnvlw-egw----lsigvttdllskfaagsfl 36 (47)
|+.-+| +|| +|-.-..++|..-..|+||
T Consensus 2 hl~~lw~~~~~~G~isr~~ae~~L~~~~~GtFL 34 (131)
T d1uura3 2 HISTLWQEGIIYGYMGRQEVNDALQNQDPGTFI 34 (131)
T ss_dssp THHHHHHHTSSCBSCCHHHHHHTTSSCCTTCEE
T ss_pred CCHHHHHCCCEECCCCHHHHHHHHHCCCCCEEE
T ss_conf 315355579277238999999997569997399
No 3
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.98 E-value=57 Score=13.77 Aligned_cols=11 Identities=55% Similarity=0.788 Sum_probs=8.6
Q ss_pred HHHHHHHHHCC
Q ss_conf 03999974202
Q gi|254780447|r 22 VTTDLLSKFAA 32 (47)
Q Consensus 22 vttdllskfaa 32 (47)
.|+|||.||-.
T Consensus 25 Tt~eLL~Kfk~ 35 (73)
T d1i27a_ 25 TTKDLLKKFQT 35 (73)
T ss_dssp CHHHHHHTSCH
T ss_pred CHHHHHHHHHH
T ss_conf 49999999753
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.82 E-value=1.2e+02 Score=12.25 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=14.9
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 0039999742023799999998750
Q gi|254780447|r 21 GVTTDLLSKFAAGSFLFILLLRAFS 45 (47)
Q Consensus 21 gvttdllskfaagsflfilllrafs 45 (47)
|.....|--.-..+||.||....-|
T Consensus 7 g~iAt~LFilvPt~FLliLyvqT~s 31 (36)
T d2axtm1 7 GLIATALFVLVPSVFLIILYVQTES 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHEEECC
T ss_conf 9999999999989998875123043
No 5
>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.65 E-value=37 Score=14.68 Aligned_cols=12 Identities=42% Similarity=1.351 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 246442225444
Q gi|254780447|r 9 HVNVLWEGWLSI 20 (47)
Q Consensus 9 hvnvlwegwlsi 20 (47)
-|-|.|.||+..
T Consensus 104 GVCV~~rGwidl 115 (134)
T d1e50b_ 104 GVCVIWKGWIDL 115 (134)
T ss_dssp TEEEEEEEEEET
T ss_pred CEEEEEEEEEEH
T ss_conf 469999878734
No 6
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.86 E-value=1.5e+02 Score=11.86 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHCC
Q ss_conf 01212464422254440----03999974202
Q gi|254780447|r 5 ASLMHVNVLWEGWLSIG----VTTDLLSKFAA 32 (47)
Q Consensus 5 aslmhvnvlwegwlsig----vttdllskfaa 32 (47)
.+..+..++-|.|++-- ....|++.|+.
T Consensus 5 ~EV~~~H~~ie~W~~ge~~~~~l~~L~a~f~p 36 (126)
T d1tp6a_ 5 REIHHAHVAIRDWLAGDSRADALDALMARFAE 36 (126)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999996578877889999983599
No 7
>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.54 E-value=1.4e+02 Score=11.90 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 24644222544400
Q gi|254780447|r 9 HVNVLWEGWLSIGV 22 (47)
Q Consensus 9 hvnvlwegwlsigv 22 (47)
-.|||-|.|+----
T Consensus 12 AAnVLrEtWliyK~ 25 (82)
T d1g4yb_ 12 AANVLRETWLIYKN 25 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 8
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=2.92 E-value=1.9e+02 Score=11.38 Aligned_cols=26 Identities=42% Similarity=0.712 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 442225444003999974202379999999875
Q gi|254780447|r 12 VLWEGWLSIGVTTDLLSKFAAGSFLFILLLRAF 44 (47)
Q Consensus 12 vlwegwlsigvttdllskfaagsflfilllraf 44 (47)
-+++.||+ -.|.|.|=|-+ ||+||+.
T Consensus 156 nlYDdWL~------~iS~yTaFsRl-iLiLR~l 181 (253)
T d3e9oa1 156 NIYDDWLD------RISSYTAFSRL-TLLLRAL 181 (253)
T ss_dssp ETTTTGGG------TSCHHHHHHHH-HHHHHHH
T ss_pred EHHHHHHC------CCCHHHHHHHH-HHHHHHC
T ss_conf 70221431------36569999999-9999643
No 9
>d1b4ua_ a.88.1.1 (A:) LigA subunit of an aromatic-ring-opening dioxygenase LigAB {Sphingomonas paucimobilis, formerly Pseudomonas paucimobilis [TaxId: 13689]}
Probab=1.71 E-value=2.9e+02 Score=10.50 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 64422254440039999742023
Q gi|254780447|r 11 NVLWEGWLSIGVTTDLLSKFAAG 33 (47)
Q Consensus 11 nvlwegwlsigvttdllskfaag 33 (47)
+-=|-+-+..|+.--.|.|||+-
T Consensus 69 ~rD~~~Li~lGgNiy~L~K~aa~ 91 (132)
T d1b4ua_ 69 ARDYNAMIDEGGNVYFLSKLFST 91 (132)
T ss_dssp HTCHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 30199999947929999999997
No 10
>d1musa_ c.55.3.4 (A:) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]}
Probab=1.64 E-value=3e+02 Score=10.43 Aligned_cols=11 Identities=45% Similarity=1.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 46442225444
Q gi|254780447|r 10 VNVLWEGWLSI 20 (47)
Q Consensus 10 vnvlwegwlsi 20 (47)
+.++|+||.-+
T Consensus 443 ~~~~w~g~~~l 453 (474)
T d1musa_ 443 WGALWEGWEAL 453 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 75999899999
Done!