RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780447|ref|YP_003064860.1| hypothetical protein
CLIBASIA_01660 [Candidatus Liberibacter asiaticus str. psy62]
         (47 letters)



>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
          Length = 834

 Score = 24.7 bits (54), Expect = 5.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 16  GWLSIGVTTDLLSKFAAGSF 35
            WL IG+ T  +  FA G F
Sbjct: 218 LWLVIGLITLAVMVFAGGHF 237


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.334    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 748,688
Number of extensions: 28966
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 5
Length of query: 47
Length of database: 5,994,473
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,562,313
Effective search space: 150182451
Effective search space used: 150182451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.1 bits)