254780448
hypothetical protein CLIBASIA_01665
| GeneID in NCBI database: | 8209434 | Locus tag: | CLIBASIA_01665 |
| Protein GI in NCBI database: | 254780448 | Protein Accession: | YP_003064861.1 |
| Gene range: | +(359409, 360344) | Protein Length: | 311aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 311 | hypothetical protein CLIBASIA_01665 [Candidatus Liberib | |||
| 254780449 | 459 | hypothetical protein CLIBASIA_01670 [Candidatus Li | 6e-35 |
| >gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62] Length = 459 | Back alignment |
|---|
Score = 139 bits (350), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 179/384 (46%), Gaps = 75/384 (19%)
Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60
MIP+YGT +EFKKGNYGWG +G +SD ALL Y + LVRG SIA K T G
Sbjct: 76 MIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLVRGGSIALKAGTAGTM 135
Query: 61 TVVQEATVMTKTTQEGA---LLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQ-- 115
+EA + + T++ A L KEGI + +EG S IKSES+G K IS++ ++
Sbjct: 136 IAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESIGTKASISSTNTAEKS 195
Query: 116 ---------TVTQTGNISDA---------------------TKA---------------- 129
+ T+ G ++ TKA
Sbjct: 196 AISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIYQRGK 255
Query: 130 --SSTIKDAQSIDR----SQAIFQKMPL------------EEYPRLQKIGINYFRDFK-L 170
S+TIK+ I++ ++AI +K+P E+ + FRDF+ L
Sbjct: 256 IFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGL 315
Query: 171 LGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHI 230
G N + +LD +RA+ FI +GKK+ D++ + +L F K+ +++QLISSYA++ I
Sbjct: 316 CGKNIDNQFILDLNRAS-FIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQLISSYANQSI 374
Query: 231 FCKPFTKDLLNLANKNIY-QLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLN---GSLHR 286
F + ++ Y S + TL + ++F AK V ++ G +
Sbjct: 375 FADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTTKVQAVDKIAGKPLK 434
Query: 287 NYGIKAEGILSRNAPPELHFSSYV 310
YG+K GILS + EL S Y+
Sbjct: 435 EYGLKISGILSPDKATELQRSFYL 458
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Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 311 | hypothetical protein CLIBASIA_01665 [Candidatus Liberib | |||
| 315122104 | 335 | hypothetical protein CKC_01770 [Candidatus Liberibacter | 1 | 4e-47 | |
| 254780449 | 459 | hypothetical protein CLIBASIA_01670 [Candidatus Liberib | 1 | 5e-31 | |
| 315122103 | 464 | hypothetical protein CKC_01765 [Candidatus Liberibacter | 1 | 9e-12 | |
| 315122103 | 464 | hypothetical protein CKC_01765 [Candidatus Liberibacter | 1 | 2e-08 | |
| 320538773 | 210 | hypothetical protein SSYM_0353 [Serratia symbiotica str | 1 | 3e-05 | |
| 27905000 | 398 | hypothetical protein bbp529 [Buchnera aphidicola str. B | 2 | 8e-15 | |
| 257471634 | 205 | hypothetical protein BaphL_02905 [Buchnera aphidicola s | 2 | 2e-12 | |
| 311086306 | 205 | hypothetical protein CWO_03065 [Buchnera aphidicola str | 2 | 3e-12 | |
| 15617174 | 367 | hypothetical protein BU584 [Buchnera aphidicola str. AP | 2 | 4e-12 | |
| 219681925 | 367 | hypothetical protein BUAP5A_577 [Buchnera aphidicola st | 2 | 4e-12 |
| >gi|315122104|ref|YP_004062593.1| hypothetical protein CKC_01770 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 335 | Back alignment and organism information |
|---|
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 172/311 (55%), Gaps = 41/311 (13%)
Query: 2 IPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIAT 61
IP+YGTIQ FK+ GWG LGI +DV L GI
Sbjct: 56 IPIYGTIQAFKEKESGWGILGITTDVLTL--------------------------IGIGY 89
Query: 62 VVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQTG 121
++ A + + + A A +T I EGG+ IKS +V + S+N+ T G
Sbjct: 90 GIKGAAALIRGSSAAATAAMAAGTSTAI-EGGNALIKSSAV-----LVESKNTLKHTDMG 143
Query: 122 NISDATKASSTIKDAQSIDRSQAIFQKMPL-EEYPRLQKIGINYFRDFKLLGTNKVYKNL 180
A++ D+ + + S++I +P+ E PRL+KI NYF DFKLL NK YK L
Sbjct: 144 -------ANTIHIDSLAQNSSKSIGTIIPVVSENPRLKKIATNYFYDFKLLSPNKAYKGL 196
Query: 181 LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL 240
DAS+A+EFI++GKKINID+ + ML L +IFP DFEKVQLIS YAHE IF PFT L
Sbjct: 197 RDASKASEFIVNGKKINIDTPEKMLENLKEIFPNDFEKVQLISCYAHEGIFDAPFTHKLF 256
Query: 241 NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLH-RNYGIKAEGILSRN 299
++ N Y SY+F+ L+D TI+F A +G + ++GS YG+K +GILS+
Sbjct: 257 SINNPKNYTGVKTYNSYKFDALEDGTINFSATYKGNFSPVDGSPSTHGYGVKVDGILSKQ 316
Query: 300 APPELHFSSYV 310
+ PELHF+ +
Sbjct: 317 SIPELHFTPII 327
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62] Length = 459 | Back alignment and organism information |
|---|
| >gi|315122103|ref|YP_004062592.1| hypothetical protein CKC_01765 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 464 | Back alignment and organism information |
|---|
| >gi|315122103|ref|YP_004062592.1| hypothetical protein CKC_01765 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 464 | Back alignment and organism information |
|---|
| >gi|320538773|ref|ZP_08038451.1| hypothetical protein SSYM_0353 [Serratia symbiotica str. Tucson] Length = 210 | Back alignment and organism information |
|---|
| >gi|27905000|ref|NP_778126.1| hypothetical protein bbp529 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 398 | Back alignment and organism information |
|---|
| >gi|257471634|ref|ZP_05635633.1| hypothetical protein BaphL_02905 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 205 | Back alignment and organism information |
|---|
| >gi|311086306|gb|ADP66388.1| hypothetical protein CWO_03065 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 205 | Back alignment and organism information |
|---|
| >gi|15617174|ref|NP_240387.1| hypothetical protein BU584 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 367 | Back alignment and organism information |
|---|
| >gi|219681925|ref|YP_002468311.1| hypothetical protein BUAP5A_577 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 367 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00