Query         gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs    5 out of 7
Neff          2.1 
Searched_HMMs 13730
Date          Wed Jun  1 05:24:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780448.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1bgva2 c.58.1.1 (A:1-194) Glu  23.3      19  0.0014   13.9   5.5   67  201-273     4-77  (194)
  2 d2gy9d1 d.66.1.2 (D:2-205) Rib  16.6      27  0.0019   12.9   1.7   18  183-201   116-133 (204)
  3 d1v97a2 d.15.4.2 (A:3-92) Xant  16.2      27   0.002   12.8   1.9   24  188-211     5-31  (90)
  4 d2ex0a1 c.87.1.9 (A:26-412) Al  15.7      19  0.0014   13.9   0.5   64  146-212   197-267 (387)
  5 d1beda_ c.47.1.13 (A:) Disulfi  15.4      22  0.0016   13.5   0.8   15  183-197   145-159 (181)
  6 d1c06a_ d.66.1.2 (A:) Ribosoma  15.3      29  0.0021   12.7   1.8   16  184-200    74-89  (159)
  7 d1s5qb_ a.59.1.1 (B:) Sin3A {M  15.0      29  0.0021   12.6   1.9   15  232-246    65-79  (89)
  8 d2uyzb1 d.15.1.1 (B:20-96) SUM  13.4      29  0.0021   12.7   0.9   24  181-205    38-61  (77)
  9 d1n62a2 d.15.4.2 (A:3-81) Carb  13.1      23  0.0017   13.3   0.4   21  188-208     5-26  (79)
 10 d1z6ma1 c.47.1.13 (A:1-172) Hy  12.8      33  0.0024   12.2   2.6   21  188-208   149-169 (172)

No 1  
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=23.28  E-value=19  Score=13.85  Aligned_cols=67  Identities=12%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHC---C-CCCCCCEEEEEE---EECCCEEEEEEEE
Q ss_conf             89999999975126974655566540746654589999883723100---2-116872379998---5357659999960
Q gi|254780448|r  201 AQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANKNI---Y-QLSNPRYSYQFN---TLKDKTISFVAKE  273 (311)
Q Consensus       201 a~~mL~dfkt~vPkd~e~~QLISSYAhQ~If~qs~~~L~s~hPe~~k---y-q~sns~ysY~in---eL~dg~vkftAt~  273 (311)
                      .+..|+++..-.|-+++++|-...++|      +...++..+|+..+   . .++.+.-..+++   ..+||.+.+.--+
T Consensus         4 ~~~~~~~v~~rnp~EpeF~QaV~Ev~~------sl~~~i~~~p~y~~~~i~e~l~~P~r~i~~~~p~~~d~G~~~~~~gy   77 (194)
T d1bgva2           4 VDRVIAEVEKKYADEPEFVQTVEEVLS------SLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGY   77 (194)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHH------TTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHH------HHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEE
T ss_conf             999999999618898199999999999------88999976977778889988707976999998799559969999667


No 2  
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=16.57  E-value=27  Score=12.90  Aligned_cols=18  Identities=28%  Similarity=0.558  Sum_probs=13.6

Q ss_pred             HHCCCEEEECCCEECCCCH
Q ss_conf             3057679983813223688
Q gi|254780448|r  183 ASRATEFIIDGKKINIDSA  201 (311)
Q Consensus       183 ~~ra~~FiiNGKKIs~Dsa  201 (311)
                      -+|+. |.+|||+|++-|-
T Consensus       116 v~Hgh-i~VNgk~VnIPSy  133 (204)
T d2gy9d1         116 VSHKA-IMVNGRVVNIASY  133 (204)
T ss_dssp             HHTTC-EEESSSBCCCTTC
T ss_pred             HHHCC-EECCCEEEEECCE
T ss_conf             98511-6419889975007


No 3  
>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.16  E-value=27  Score=12.84  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=13.7

Q ss_pred             EEEECCCEEC-CCCH--HHHHHHHHHH
Q ss_conf             7998381322-3688--9999999975
Q gi|254780448|r  188 EFIIDGKKIN-IDSA--QNMLAELNKI  211 (311)
Q Consensus       188 ~FiiNGKKIs-~Dsa--~~mL~dfkt~  211 (311)
                      +|++||+.+. .+-.  ...|+-+|+.
T Consensus         5 ~F~lNG~~~~~~~~~p~~tLl~~LR~~   31 (90)
T d1v97a2           5 VFFVNGKKVVEKNADPETTLLAYLRRK   31 (90)
T ss_dssp             EEEETTEEEEETTCCTTCBHHHHHHHT
T ss_pred             EEEECCEEEEECCCCCCCCHHHHHHHH
T ss_conf             999999998874689998899998744


No 4  
>d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]}
Probab=15.72  E-value=19  Score=13.85  Aligned_cols=64  Identities=30%  Similarity=0.438  Sum_probs=42.9

Q ss_pred             HHCCCHHHCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCEECCCC-------HHHHHHHHHHHC
Q ss_conf             5408866743430118002323444266704678876305767998381322368-------899999999751
Q gi|254780448|r  146 FQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDS-------AQNMLAELNKIF  212 (311)
Q Consensus       146 ~~k~p~~e~~~~~~~~~~~frdf~Llg~nk~~q~~LD~~ra~~FiiNGKKIs~Ds-------a~~mL~dfkt~v  212 (311)
                      -|.|++..|+++-...+.+|  ..+.|-++-.+.=+-..+. .|+|-|--..--+       ++--++-++++.
T Consensus       197 ~kqM~Wd~f~~fn~~Qk~lf--~~~vgf~~E~~qq~~~q~~-nFiFtGTts~~~~~e~~eyyaqqQInvin~a~  267 (387)
T d2ex0a1         197 YQKMDWTAYQQLTPEQQAFY--LTLVGFNDEVKQSLEVQQA-KFIFTGTTTWEGNTDVREYYAQQQLNLLNHFT  267 (387)
T ss_dssp             EEECCSCHHHHSCHHHHHHH--HHHHTCCHHHHHHTCCSSE-EEEEECCCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHCCCCHHHHHHH--HHHHCCCHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             33467523200698888899--9871798999999972678-75997134556763067788999899987323


No 5  
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=15.44  E-value=22  Score=13.47  Aligned_cols=15  Identities=0%  Similarity=0.215  Sum_probs=9.9

Q ss_pred             HHCCCEEEECCCEEC
Q ss_conf             305767998381322
Q gi|254780448|r  183 ASRATEFIIDGKKIN  197 (311)
Q Consensus       183 ~~ra~~FiiNGKKIs  197 (311)
                      ..---+|+||||.+-
T Consensus       145 i~gTPt~~InGk~~v  159 (181)
T d1beda_         145 LTGVPAVVVNNRYLV  159 (181)
T ss_dssp             CCSSSEEEETTTEEE
T ss_pred             CCCCCEEEECCEEEE
T ss_conf             861668999999960


No 6  
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.31  E-value=29  Score=12.70  Aligned_cols=16  Identities=31%  Similarity=0.744  Sum_probs=9.5

Q ss_pred             HCCCEEEECCCEECCCC
Q ss_conf             05767998381322368
Q gi|254780448|r  184 SRATEFIIDGKKINIDS  200 (311)
Q Consensus       184 ~ra~~FiiNGKKIs~Ds  200 (311)
                      +|+. +.+||++|++-|
T Consensus        74 ~Hgh-i~vNgk~v~iPS   89 (159)
T d1c06a_          74 THGH-ILVDGSRVNIPS   89 (159)
T ss_dssp             HTSC-EEETTEECCCSS
T ss_pred             HHCC-EECCCEEEEECC
T ss_conf             7356-371335998512


No 7  
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.98  E-value=29  Score=12.64  Aligned_cols=15  Identities=7%  Similarity=-0.053  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHCCCHH
Q ss_conf             458999988372310
Q gi|254780448|r  232 CKPFTKDLLNLANKN  246 (311)
Q Consensus       232 ~qs~~~L~s~hPe~~  246 (311)
                      ..-+..|+..||++.
T Consensus        65 ~~rV~~Lf~~hpdLi   79 (89)
T d1s5qb_          65 YAQVARLFKNQEDLL   79 (89)
T ss_dssp             HHHHHHHSCSCHHHH
T ss_pred             HHHHHHHHCCCHHHH
T ss_conf             999999985487999


No 8  
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.41  E-value=29  Score=12.70  Aligned_cols=24  Identities=17%  Similarity=0.405  Sum_probs=18.1

Q ss_pred             HHHHCCCEEEECCCEECCCCHHHHH
Q ss_conf             7630576799838132236889999
Q gi|254780448|r  181 LDASRATEFIIDGKKINIDSAQNML  205 (311)
Q Consensus       181 LD~~ra~~FiiNGKKIs~Dsa~~mL  205 (311)
                      ++.++.. |++||+.+..+..+..+
T Consensus        38 ~~~~~~~-f~fdG~~l~~~~T~~~l   61 (77)
T d2uyzb1          38 VPMNSLR-FLFEGQRIADNHTPKEL   61 (77)
T ss_dssp             CCGGGEE-EEETTEECCTTCCHHHH
T ss_pred             CCHHHEE-EEECCEECCCCCCHHHC
T ss_conf             9956879-99999897899998993


No 9  
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=13.13  E-value=23  Score=13.33  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=0.0

Q ss_pred             EEEECCCEECCC-CHHHHHHHH
Q ss_conf             799838132236-889999999
Q gi|254780448|r  188 EFIIDGKKINID-SAQNMLAEL  208 (311)
Q Consensus       188 ~FiiNGKKIs~D-sa~~mL~df  208 (311)
                      +|.+||+++..+ .+..+|.+|
T Consensus         5 ~~~lNG~~~~~~v~p~~~Ll~~   26 (79)
T d1n62a2           5 ELTINGHPVEALVEPRTLLIHF   26 (79)
T ss_dssp             EEEETTEEEEEEECTTCBHHHH
T ss_pred             EEEECCEEEEEECCCCCCHHHH
T ss_conf             9999999889866999969999


No 10 
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}
Probab=12.83  E-value=33  Score=12.25  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             EEEECCCEECCCCHHHHHHHH
Q ss_conf             799838132236889999999
Q gi|254780448|r  188 EFIIDGKKINIDSAQNMLAEL  208 (311)
Q Consensus       188 ~FiiNGKKIs~Dsa~~mL~df  208 (311)
                      +|+|||+++.-....+-+.++
T Consensus       149 t~~Ing~~~~g~~~~~~~~~~  169 (172)
T d1z6ma1         149 TIIIGEYIFDESVTEEELRGY  169 (172)
T ss_dssp             EEEETTEEECTTCCHHHHHHH
T ss_pred             EEEECCEEECCCCCHHHHHHH
T ss_conf             898999980598999999999


Done!