Query gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 311 No_of_seqs 5 out of 7 Neff 2.1 Searched_HMMs 13730 Date Wed Jun 1 05:24:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780448.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1bgva2 c.58.1.1 (A:1-194) Glu 23.3 19 0.0014 13.9 5.5 67 201-273 4-77 (194) 2 d2gy9d1 d.66.1.2 (D:2-205) Rib 16.6 27 0.0019 12.9 1.7 18 183-201 116-133 (204) 3 d1v97a2 d.15.4.2 (A:3-92) Xant 16.2 27 0.002 12.8 1.9 24 188-211 5-31 (90) 4 d2ex0a1 c.87.1.9 (A:26-412) Al 15.7 19 0.0014 13.9 0.5 64 146-212 197-267 (387) 5 d1beda_ c.47.1.13 (A:) Disulfi 15.4 22 0.0016 13.5 0.8 15 183-197 145-159 (181) 6 d1c06a_ d.66.1.2 (A:) Ribosoma 15.3 29 0.0021 12.7 1.8 16 184-200 74-89 (159) 7 d1s5qb_ a.59.1.1 (B:) Sin3A {M 15.0 29 0.0021 12.6 1.9 15 232-246 65-79 (89) 8 d2uyzb1 d.15.1.1 (B:20-96) SUM 13.4 29 0.0021 12.7 0.9 24 181-205 38-61 (77) 9 d1n62a2 d.15.4.2 (A:3-81) Carb 13.1 23 0.0017 13.3 0.4 21 188-208 5-26 (79) 10 d1z6ma1 c.47.1.13 (A:1-172) Hy 12.8 33 0.0024 12.2 2.6 21 188-208 149-169 (172) No 1 >d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Probab=23.28 E-value=19 Score=13.85 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=48.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHC---C-CCCCCCEEEEEE---EECCCEEEEEEEE Q ss_conf 89999999975126974655566540746654589999883723100---2-116872379998---5357659999960 Q gi|254780448|r 201 AQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANKNI---Y-QLSNPRYSYQFN---TLKDKTISFVAKE 273 (311) Q Consensus 201 a~~mL~dfkt~vPkd~e~~QLISSYAhQ~If~qs~~~L~s~hPe~~k---y-q~sns~ysY~in---eL~dg~vkftAt~ 273 (311) .+..|+++..-.|-+++++|-...++| +...++..+|+..+ . .++.+.-..+++ ..+||.+.+.--+ T Consensus 4 ~~~~~~~v~~rnp~EpeF~QaV~Ev~~------sl~~~i~~~p~y~~~~i~e~l~~P~r~i~~~~p~~~d~G~~~~~~gy 77 (194) T d1bgva2 4 VDRVIAEVEKKYADEPEFVQTVEEVLS------SLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGY 77 (194) T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH------TTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEE T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH------HHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEE T ss_conf 999999999618898199999999999------88999976977778889988707976999998799559969999667 No 2 >d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} Probab=16.57 E-value=27 Score=12.90 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=13.6 Q ss_pred HHCCCEEEECCCEECCCCH Q ss_conf 3057679983813223688 Q gi|254780448|r 183 ASRATEFIIDGKKINIDSA 201 (311) Q Consensus 183 ~~ra~~FiiNGKKIs~Dsa 201 (311) -+|+. |.+|||+|++-|- T Consensus 116 v~Hgh-i~VNgk~VnIPSy 133 (204) T d2gy9d1 116 VSHKA-IMVNGRVVNIASY 133 (204) T ss_dssp HHTTC-EEESSSBCCCTTC T ss_pred HHHCC-EECCCEEEEECCE T ss_conf 98511-6419889975007 No 3 >d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Probab=16.16 E-value=27 Score=12.84 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=13.7 Q ss_pred EEEECCCEEC-CCCH--HHHHHHHHHH Q ss_conf 7998381322-3688--9999999975 Q gi|254780448|r 188 EFIIDGKKIN-IDSA--QNMLAELNKI 211 (311) Q Consensus 188 ~FiiNGKKIs-~Dsa--~~mL~dfkt~ 211 (311) +|++||+.+. .+-. ...|+-+|+. T Consensus 5 ~F~lNG~~~~~~~~~p~~tLl~~LR~~ 31 (90) T d1v97a2 5 VFFVNGKKVVEKNADPETTLLAYLRRK 31 (90) T ss_dssp EEEETTEEEEETTCCTTCBHHHHHHHT T ss_pred EEEECCEEEEECCCCCCCCHHHHHHHH T ss_conf 999999998874689998899998744 No 4 >d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]} Probab=15.72 E-value=19 Score=13.85 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=42.9 Q ss_pred HHCCCHHHCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCEECCCC-------HHHHHHHHHHHC Q ss_conf 5408866743430118002323444266704678876305767998381322368-------899999999751 Q gi|254780448|r 146 FQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDS-------AQNMLAELNKIF 212 (311) Q Consensus 146 ~~k~p~~e~~~~~~~~~~~frdf~Llg~nk~~q~~LD~~ra~~FiiNGKKIs~Ds-------a~~mL~dfkt~v 212 (311) -|.|++..|+++-...+.+| ..+.|-++-.+.=+-..+. .|+|-|--..--+ ++--++-++++. T Consensus 197 ~kqM~Wd~f~~fn~~Qk~lf--~~~vgf~~E~~qq~~~q~~-nFiFtGTts~~~~~e~~eyyaqqQInvin~a~ 267 (387) T d2ex0a1 197 YQKMDWTAYQQLTPEQQAFY--LTLVGFNDEVKQSLEVQQA-KFIFTGTTTWEGNTDVREYYAQQQLNLLNHFT 267 (387) T ss_dssp EEECCSCHHHHSCHHHHHHH--HHHHTCCHHHHHHTCCSSE-EEEEECCCCCCSSCCCHHHHHHHHHHHHHHHH T ss_pred HHCCCCCHHCCCCHHHHHHH--HHHHCCCHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 33467523200698888899--9871798999999972678-75997134556763067788999899987323 No 5 >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Probab=15.44 E-value=22 Score=13.47 Aligned_cols=15 Identities=0% Similarity=0.215 Sum_probs=9.9 Q ss_pred HHCCCEEEECCCEEC Q ss_conf 305767998381322 Q gi|254780448|r 183 ASRATEFIIDGKKIN 197 (311) Q Consensus 183 ~~ra~~FiiNGKKIs 197 (311) ..---+|+||||.+- T Consensus 145 i~gTPt~~InGk~~v 159 (181) T d1beda_ 145 LTGVPAVVVNNRYLV 159 (181) T ss_dssp CCSSSEEEETTTEEE T ss_pred CCCCCEEEECCEEEE T ss_conf 861668999999960 No 6 >d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]} Probab=15.31 E-value=29 Score=12.70 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=9.5 Q ss_pred HCCCEEEECCCEECCCC Q ss_conf 05767998381322368 Q gi|254780448|r 184 SRATEFIIDGKKINIDS 200 (311) Q Consensus 184 ~ra~~FiiNGKKIs~Ds 200 (311) +|+. +.+||++|++-| T Consensus 74 ~Hgh-i~vNgk~v~iPS 89 (159) T d1c06a_ 74 THGH-ILVDGSRVNIPS 89 (159) T ss_dssp HTSC-EEETTEECCCSS T ss_pred HHCC-EECCCEEEEECC T ss_conf 7356-371335998512 No 7 >d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Probab=14.98 E-value=29 Score=12.64 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=7.3 Q ss_pred HHHHHHHHHHCCCHH Q ss_conf 458999988372310 Q gi|254780448|r 232 CKPFTKDLLNLANKN 246 (311) Q Consensus 232 ~qs~~~L~s~hPe~~ 246 (311) ..-+..|+..||++. T Consensus 65 ~~rV~~Lf~~hpdLi 79 (89) T d1s5qb_ 65 YAQVARLFKNQEDLL 79 (89) T ss_dssp HHHHHHHSCSCHHHH T ss_pred HHHHHHHHCCCHHHH T ss_conf 999999985487999 No 8 >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Probab=13.41 E-value=29 Score=12.70 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=18.1 Q ss_pred HHHHCCCEEEECCCEECCCCHHHHH Q ss_conf 7630576799838132236889999 Q gi|254780448|r 181 LDASRATEFIIDGKKINIDSAQNML 205 (311) Q Consensus 181 LD~~ra~~FiiNGKKIs~Dsa~~mL 205 (311) ++.++.. |++||+.+..+..+..+ T Consensus 38 ~~~~~~~-f~fdG~~l~~~~T~~~l 61 (77) T d2uyzb1 38 VPMNSLR-FLFEGQRIADNHTPKEL 61 (77) T ss_dssp CCGGGEE-EEETTEECCTTCCHHHH T ss_pred CCHHHEE-EEECCEECCCCCCHHHC T ss_conf 9956879-99999897899998993 No 9 >d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Probab=13.13 E-value=23 Score=13.33 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=0.0 Q ss_pred EEEECCCEECCC-CHHHHHHHH Q ss_conf 799838132236-889999999 Q gi|254780448|r 188 EFIIDGKKINID-SAQNMLAEL 208 (311) Q Consensus 188 ~FiiNGKKIs~D-sa~~mL~df 208 (311) +|.+||+++..+ .+..+|.+| T Consensus 5 ~~~lNG~~~~~~v~p~~~Ll~~ 26 (79) T d1n62a2 5 ELTINGHPVEALVEPRTLLIHF 26 (79) T ss_dssp EEEETTEEEEEEECTTCBHHHH T ss_pred EEEECCEEEEEECCCCCCHHHH T ss_conf 9999999889866999969999 No 10 >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Probab=12.83 E-value=33 Score=12.25 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=0.0 Q ss_pred EEEECCCEECCCCHHHHHHHH Q ss_conf 799838132236889999999 Q gi|254780448|r 188 EFIIDGKKINIDSAQNMLAEL 208 (311) Q Consensus 188 ~FiiNGKKIs~Dsa~~mL~df 208 (311) +|+|||+++.-....+-+.++ T Consensus 149 t~~Ing~~~~g~~~~~~~~~~ 169 (172) T d1z6ma1 149 TIIIGEYIFDESVTEEELRGY 169 (172) T ss_dssp EEEETTEEECTTCCHHHHHHH T ss_pred EEEECCEEECCCCCHHHHHHH T ss_conf 898999980598999999999 Done!