BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780448|ref|YP_003064861.1| hypothetical protein
CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
(311 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 311
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60
MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA
Sbjct: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60
Query: 61 TVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQT 120
TVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQT
Sbjct: 61 TVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQT 120
Query: 121 GNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNL 180
GNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNL
Sbjct: 121 GNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNL 180
Query: 181 LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL 240
LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL
Sbjct: 181 LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL 240
Query: 241 NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNA 300
NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNA
Sbjct: 241 NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNA 300
Query: 301 PPELHFSSYVN 311
PPELHFSSYVN
Sbjct: 301 PPELHFSSYVN 311
>gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 459
Score = 139 bits (350), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 179/384 (46%), Gaps = 75/384 (19%)
Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60
MIP+YGT +EFKKGNYGWG +G +SD ALL Y + LVRG SIA K T G
Sbjct: 76 MIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLVRGGSIALKAGTAGTM 135
Query: 61 TVVQEATVMTKTTQEGA---LLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQ-- 115
+EA + + T++ A L KEGI + +EG S IKSES+G K IS++ ++
Sbjct: 136 IAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESIGTKASISSTNTAEKS 195
Query: 116 ---------TVTQTGNISDA---------------------TKA---------------- 129
+ T+ G ++ TKA
Sbjct: 196 AISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIYQRGK 255
Query: 130 --SSTIKDAQSIDR----SQAIFQKMPL------------EEYPRLQKIGINYFRDFK-L 170
S+TIK+ I++ ++AI +K+P E+ + FRDF+ L
Sbjct: 256 IFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGL 315
Query: 171 LGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHI 230
G N + +LD +RA+ FI +GKK+ D++ + +L F K+ +++QLISSYA++ I
Sbjct: 316 CGKNIDNQFILDLNRAS-FIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQLISSYANQSI 374
Query: 231 FCKPFTKDLLNLANKNIY-QLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLN---GSLHR 286
F + ++ Y S + TL + ++F AK V ++ G +
Sbjct: 375 FADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTTKVQAVDKIAGKPLK 434
Query: 287 NYGIKAEGILSRNAPPELHFSSYV 310
YG+K GILS + EL S Y+
Sbjct: 435 EYGLKISGILSPDKATELQRSFYL 458
>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 492
Score = 26.2 bits (56), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 15 NYGWGALGIVSD-------VALLAIPAAYLGKV 40
NYGW LG + D V LA+ +A+ GK+
Sbjct: 99 NYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKI 131
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 22.7 bits (47), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 172 GTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISS 224
T N++D F+ +++ SAQ +L ++N K +KV I++
Sbjct: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 333
Score = 22.7 bits (47), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 250 LSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAPPE 303
+ NP Y+ N + A E + ++ S YGI I++ N P E
Sbjct: 85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQE 138
>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 410
Score = 22.3 bits (46), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 192 DGKKINIDSAQNMLAELNKIFPKDFEKVQLI----SSYAHEH 229
DG + ++ + ++ I P+D +K ++I S Y H H
Sbjct: 152 DGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,825
Number of Sequences: 1233
Number of extensions: 6955
Number of successful extensions: 28
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 311
length of database: 328,796
effective HSP length: 74
effective length of query: 237
effective length of database: 237,554
effective search space: 56300298
effective search space used: 56300298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 38 (19.2 bits)