BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] (311 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/311 (100%), Positives = 311/311 (100%) Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA Sbjct: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60 Query: 61 TVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQT 120 TVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQT Sbjct: 61 TVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQT 120 Query: 121 GNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNL 180 GNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNL Sbjct: 121 GNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLLGTNKVYKNL 180 Query: 181 LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL 240 LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL Sbjct: 181 LDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLL 240 Query: 241 NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNA 300 NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNA Sbjct: 241 NLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNA 300 Query: 301 PPELHFSSYVN 311 PPELHFSSYVN Sbjct: 301 PPELHFSSYVN 311 >gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62] Length = 459 Score = 139 bits (350), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 179/384 (46%), Gaps = 75/384 (19%) Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60 MIP+YGT +EFKKGNYGWG +G +SD ALL Y + LVRG SIA K T G Sbjct: 76 MIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLVRGGSIALKAGTAGTM 135 Query: 61 TVVQEATVMTKTTQEGA---LLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQ-- 115 +EA + + T++ A L KEGI + +EG S IKSES+G K IS++ ++ Sbjct: 136 IAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESIGTKASISSTNTAEKS 195 Query: 116 ---------TVTQTGNISDA---------------------TKA---------------- 129 + T+ G ++ TKA Sbjct: 196 AISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIYQRGK 255 Query: 130 --SSTIKDAQSIDR----SQAIFQKMPL------------EEYPRLQKIGINYFRDFK-L 170 S+TIK+ I++ ++AI +K+P E+ + FRDF+ L Sbjct: 256 IFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGL 315 Query: 171 LGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHI 230 G N + +LD +RA+ FI +GKK+ D++ + +L F K+ +++QLISSYA++ I Sbjct: 316 CGKNIDNQFILDLNRAS-FIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQLISSYANQSI 374 Query: 231 FCKPFTKDLLNLANKNIY-QLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLN---GSLHR 286 F + ++ Y S + TL + ++F AK V ++ G + Sbjct: 375 FADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTTKVQAVDKIAGKPLK 434 Query: 287 NYGIKAEGILSRNAPPELHFSSYV 310 YG+K GILS + EL S Y+ Sbjct: 435 EYGLKISGILSPDKATELQRSFYL 458 >gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 26.2 bits (56), Expect = 0.81, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%) Query: 15 NYGWGALGIVSD-------VALLAIPAAYLGKV 40 NYGW LG + D V LA+ +A+ GK+ Sbjct: 99 NYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKI 131 >gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 22.7 bits (47), Expect = 8.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 172 GTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISS 224 T N++D F+ +++ SAQ +L ++N K +KV I++ Sbjct: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 >gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 22.7 bits (47), Expect = 8.4, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 250 LSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAPPE 303 + NP Y+ N + A E + ++ S YGI I++ N P E Sbjct: 85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQE 138 >gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 410 Score = 22.3 bits (46), Expect = 9.8, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 192 DGKKINIDSAQNMLAELNKIFPKDFEKVQLI----SSYAHEH 229 DG + ++ + ++ I P+D +K ++I S Y H H Sbjct: 152 DGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.131 0.362 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 181,825 Number of Sequences: 1233 Number of extensions: 6955 Number of successful extensions: 28 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 11 length of query: 311 length of database: 328,796 effective HSP length: 74 effective length of query: 237 effective length of database: 237,554 effective search space: 56300298 effective search space used: 56300298 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 38 (19.2 bits)