Query gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 459
No_of_seqs 4 out of 6
Neff 1.6
Searched_HMMs 13730
Date Wed Jun 1 05:31:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780449.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zata2 d.335.1.1 (A:217-338) 23.1 5.8 0.00042 16.7 -0.8 13 86-98 79-91 (122)
2 d1xiya1 c.47.1.10 (A:2-180) 1- 22.6 16 0.0011 13.9 1.4 66 282-352 90-176 (179)
3 d1wl8a1 c.23.16.1 (A:1-188) GM 20.9 19 0.0014 13.4 1.4 34 278-318 155-188 (188)
4 d1hf2a2 c.102.1.1 (A:1-99) Cel 20.7 20 0.0015 13.2 1.6 17 431-447 64-80 (99)
5 d1tp9a1 c.47.1.10 (A:1-162) Pl 20.5 8 0.00059 15.8 -0.5 13 328-340 127-139 (162)
6 d1prxa_ c.47.1.10 (A:) 1-Cys p 20.1 18 0.0013 13.5 1.2 57 296-352 94-160 (220)
7 d1vk5a_ a.220.1.1 (A:) Hypothe 18.4 22 0.0016 12.8 1.7 16 345-360 6-21 (121)
8 d1xcca_ c.47.1.10 (A:) 1-Cys p 16.1 20 0.0014 13.2 0.7 55 297-352 95-160 (219)
9 d1nm3a2 c.47.1.10 (A:3-165) N- 15.7 13 0.00095 14.4 -0.3 27 327-353 121-161 (163)
10 d1bgva2 c.58.1.1 (A:1-194) Glu 14.3 28 0.0021 12.2 7.3 67 346-418 5-77 (194)
No 1
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=23.05 E-value=5.8 Score=16.72 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.0
Q ss_pred HCCCCCCCHHHHH
Q ss_conf 4157744105766
Q gi|254780449|r 86 FKKGNYGWGIVGA 98 (459)
Q Consensus 86 fkkgnygwg~~g~ 98 (459)
..-|.|||.|-..
T Consensus 79 V~gG~YGW~Id~~ 91 (122)
T d1zata2 79 VPVGTYSWTIQTD 91 (122)
T ss_dssp ECCCSSCEEECHH
T ss_pred ECCCCCCEEECHH
T ss_conf 9189763588679
No 2
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=22.64 E-value=16 Score=13.86 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCHHHCCCCHHCCHHHHHHHHHHHCCCCH--HHHHH-CCCCEEEEEECCEECC----------------
Q ss_conf 6544332223321343133112071678788877256511--24441-1472479970945420----------------
Q gi|254780449|r 282 PFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGLCGKNID--NQFIL-DLNRASFIFNGKKLAR---------------- 342 (459)
Q Consensus 282 p~~~~~~~~~~~~~~e~~~~~~~~~~~frdf~~l~g~n~d--n~fll-D~NrasFIvNgkkIsv---------------- 342 (459)
||.-+.|..-+.+ ...+|++-.. .+|--.+|-..+ ..+|. -..|+.||+++++|-.
T Consensus 90 ~fv~~aW~~~~~~-~~I~~lsD~~----g~f~k~lg~~~d~~~~g~G~Rs~R~a~iiddg~I~~~~vE~~~~~~~~~dp~ 164 (179)
T d1xiya1 90 IYVLKSWFKSMDI-KKIKYISDGN----SSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPY 164 (179)
T ss_dssp HHHHHHHHHHTTC-CSSEEEECTT----SHHHHHTTCEEECGGGTCCEEECCEEEEEETTEEEEEEECSSCCTTCSSCCC
T ss_pred HHHHHHHHHHCCC-CEEEEEECCC----HHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCC
T ss_conf 8999999860676-5589920786----5788743104221257870698569999999999999983798778888874
Q ss_pred --CCHHHHHHHH
Q ss_conf --0089999999
Q gi|254780449|r 343 --DNSAEAIQKL 352 (459)
Q Consensus 343 --dN~~~mL~~l 352 (459)
-++.+||+.|
T Consensus 165 ~vSsae~iL~~L 176 (179)
T d1xiya1 165 DISTVNNVKEFL 176 (179)
T ss_dssp STTSHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 567999999987
No 3
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.88 E-value=19 Score=13.38 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=24.9
Q ss_pred HHHCCCCCCCCCCCCCCHHHCCCCHHCCHHHHHHHHHHHCC
Q ss_conf 54086544332223321343133112071678788877256
Q gi|254780449|r 278 DKKIPFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGLCGK 318 (459)
Q Consensus 278 ~~k~p~~~~~~~~~~~~~~e~~~~~~~~~~~frdf~~l~g~ 318 (459)
.++-|+.|-||. -|.. ....|..+|+.|-.|||.
T Consensus 155 ~~~~~i~gvQFH------PE~s-~t~~G~~il~nFl~l~g~ 188 (188)
T d1wl8a1 155 HEELPIYGVQFH------PEVA-HTEKGEEILRNFAKLCGE 188 (188)
T ss_dssp ESSSCEEEESSC------TTST-TSTTHHHHHHHHHHHHCC
T ss_pred ECCCCEEEEECC------CCCC-CCCCHHHHHHHHHHHHCC
T ss_conf 789989999828------7217-994489999999998587
No 4
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.69 E-value=20 Score=13.18 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=13.0
Q ss_pred CHHHHCCEEEEEEECCC
Q ss_conf 41431551699986789
Q gi|254780449|r 431 KPLKEYGLKISGILSPD 447 (459)
Q Consensus 431 kkyk~yGIKaSgILSpd 447 (459)
++.++||++++.||---
T Consensus 64 s~l~~lgl~Vk~IL~gs 80 (99)
T d1hf2a2 64 SHLRNLGLEVSQILVGS 80 (99)
T ss_dssp HHHHHTTCEEEEEECC-
T ss_pred HHHHHCCCEEEEEEEEC
T ss_conf 99997596888889713
No 5
>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}
Probab=20.53 E-value=8 Score=15.79 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=7.6
Q ss_pred CCCEEEEEECCEE
Q ss_conf 4724799709454
Q gi|254780449|r 328 LNRASFIFNGKKL 340 (459)
Q Consensus 328 ~NrasFIvNgkkI 340 (459)
..|++||+|.++|
T Consensus 127 ~~R~tfiIddg~I 139 (162)
T d1tp9a1 127 SRRFALLVDDLKV 139 (162)
T ss_dssp ECCEEEEEETTEE
T ss_pred EEEEEEEEECCEE
T ss_conf 9999999989999
No 6
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.10 E-value=18 Score=13.51 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCEECC----------CCHHHHHHHH
Q ss_conf 43133112071678788877256511244411472479970945420----------0089999999
Q gi|254780449|r 296 SEFKMVPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFNGKKLAR----------DNSAEAIQKL 352 (459)
Q Consensus 296 ~e~~~~~~~~~~~frdf~~l~g~n~dn~fllD~NrasFIvNgkkIsv----------dN~~~mL~~l 352 (459)
-.||++.-.+...-+.|--++.+..++.-+.=+.|++||||...+-+ .|..+.|.-+
T Consensus 94 l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l 160 (220)
T d1prxa_ 94 LPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVV 160 (220)
T ss_dssp CSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 6305105863199998678563235555522456789997476532699992688665638899999
No 7
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.39 E-value=22 Score=12.84 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHCCCH
Q ss_conf 8999999985506885
Q gi|254780449|r 345 SAEAIQKLMNQFAKNP 360 (459)
Q Consensus 345 ~~~mL~~l~k~f~kN~ 360 (459)
++||-|+.||++|--+
T Consensus 6 ~AemYQ~yMk~iPIP~ 21 (121)
T d1vk5a_ 6 RAEMYQDYMKQVPIPT 21 (121)
T ss_dssp HHHHHHHHHHTSCCCS
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999987299885
No 8
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}
Probab=16.15 E-value=20 Score=13.21 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred HCCCCHHCCHHHHHHHHHHHCC-CCHHHHHHCCCCEEEEEECCEEC----C------CCHHHHHHHH
Q ss_conf 3133112071678788877256-51124441147247997094542----0------0089999999
Q gi|254780449|r 297 EFKMVPLSDQTLFRDFQGLCGK-NIDNQFILDLNRASFIFNGKKLA----R------DNSAEAIQKL 352 (459)
Q Consensus 297 e~~~~~~~~~~~frdf~~l~g~-n~dn~fllD~NrasFIvNgkkIs----v------dN~~~mL~~l 352 (459)
+||++--.+..+.+.|- ++.. ..+..-+.-+.|++||||...+- + .|..+.|..+
T Consensus 95 ~fpllsD~~~~va~~yg-v~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l 160 (219)
T d1xcca_ 95 EIPIVCDESRELANKLK-IMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVL 160 (219)
T ss_dssp CCCEEECTTSHHHHHHT-CEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 71202452008999858-9651113676544145666998675338999992787665899999999
No 9
>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=15.70 E-value=13 Score=14.40 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=18.9
Q ss_pred CCCCEEEEEECCEEC---CC-----------CHHHHHHHHH
Q ss_conf 147247997094542---00-----------0899999998
Q gi|254780449|r 327 DLNRASFIFNGKKLA---RD-----------NSAEAIQKLM 353 (459)
Q Consensus 327 D~NrasFIvNgkkIs---vd-----------N~~~mL~~l~ 353 (459)
-..|++||+++|+|- ++ ++.+||+.|.
T Consensus 121 ~s~R~~~IiddG~I~~~~v~~~~~g~~~~~s~ae~vL~~L~ 161 (163)
T d1nm3a2 121 RSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLA 161 (163)
T ss_dssp EECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred CCCEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHC
T ss_conf 31237999719989999985079999754469999999774
No 10
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=14.29 E-value=28 Score=12.18 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHH---HHHHHCCCCCCEEEEEEEE---ECCEEEEEEEC
Q ss_conf 9999999855068854644556542040222268999872600---3333113687306999986---07669999832
Q gi|254780449|r 346 AEAIQKLMNQFAKNPKQLQLISSYANQSIFADSVVHLMQSIPE---FAKYASKSGSASKFTAKTL---TNGEVAFTAKY 418 (459)
Q Consensus 346 ~~mL~~l~k~f~kN~e~~QLISSYAnQ~IF~qsyi~L~sehPe---~~kYq~Ks~Sr~sY~~ntL---~DG~V~FtAk~ 418 (459)
+..+.++.+..+-.|||+|-...+++ +...++..+|+ ...+.....|.-..+|+.- +||++...--+
T Consensus 5 ~~~~~~v~~rnp~EpeF~QaV~Ev~~------sl~~~i~~~p~y~~~~i~e~l~~P~r~i~~~~p~~~d~G~~~~~~gy 77 (194)
T d1bgva2 5 DRVIAEVEKKYADEPEFVQTVEEVLS------SLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGY 77 (194)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH------TTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH------HHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEE
T ss_conf 99999999618898199999999999------88999976977778889988707976999998799559969999667
Done!