RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780449|ref|YP_003064862.1| hypothetical protein
CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
         (459 letters)



>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 27.2 bits (59), Expect = 2.8
 Identities = 26/205 (12%), Positives = 60/205 (29%), Gaps = 14/205 (6%)

Query: 192 AEKSAISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKALT--KADPALES 249
           A   A++++I+   +   G         +     Q++      I   A T   A    ES
Sbjct: 156 AAAVALTRRISVI-SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 214

Query: 250 IYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKI----PFIGNQWRDINTAHSEFKMVPLSD 305
           + +  +    T +    I + A T   +            +    ++          + D
Sbjct: 215 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 274

Query: 306 QTLFRDFQGLCGKNIDNQFIL--DLNRASFIFNGKKLA---RDNSAEAIQKLMNQFAKNP 360
             +          +   + I   D ++ + +  G  L       +A    +   Q ++  
Sbjct: 275 LPMMSRLIDALPDHA--RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 332

Query: 361 KQLQLISSYANQSIFADSVVHLMQS 385
                  +    +   DS+  L +S
Sbjct: 333 GTHVPAGTGTEAASLRDSLCLLQKS 357


>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
           aggregans [TaxId: 54254]}
          Length = 481

 Score = 26.3 bits (57), Expect = 4.7
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 254 GKIFSNTIKNNAFIEKLAHTT 274
             +F     +N   ++L H T
Sbjct: 458 ALVFREIATHNGIPDELQHLT 478


>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 258

 Score = 26.1 bits (57), Expect = 6.1
 Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 6/30 (20%)

Query: 283 FIGNQWRDINTAHSEFKMVPLSDQTLFRDF 312
           F+  Q+      H EF   P     LF  F
Sbjct: 223 FVACQF------HPEFTSTPRDGHPLFAGF 246


>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
           {Bordetella bronchiseptica [TaxId: 518]}
          Length = 191

 Score = 25.8 bits (57), Expect = 6.9
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 94  GIVGAISDAALLIPVVGYGARAAINLVRGGSIAL-----KAGTAGTMI 136
           G+ G +   A+     G+  R+ +    G   A+        TAG  +
Sbjct: 85  GVDGEMEHGAVWHEAGGWAMRSVL----GEPKAMVPAVKAVATAGYRM 128


>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
           domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId:
           103690]}
          Length = 98

 Score = 25.8 bits (57), Expect = 7.8
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 352 LMNQFAKNPKQLQLISSYANQSIFAD-SV-----VHLMQSIPEFAK 391
           L++ F  +    + I  + N    A+  V     +H M+ I EF+K
Sbjct: 19  LLSYFTTDKALKEKIDKFINAVFCANIPVPEIIEIH-MELIDEFSK 63


>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
           C-terminal domain {Synechococcus elongatus PCC 7942
           [TaxId: 1140]}
          Length = 106

 Score = 25.8 bits (57), Expect = 8.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 352 LMNQFAKNPKQLQLISSYANQSIFAD-SV-----VHLMQSIPEFAK 391
           +++ F+ N    Q I ++ N + FAD  V     +H M+ + EFAK
Sbjct: 26  VLSYFSPNSNLNQSIDNFVNMAFFADVPVTKVVEIH-MELMDEFAK 70


>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
           domain {Thermosynechococcus elongatus bp-1 [TaxId:
           197221]}
          Length = 106

 Score = 25.4 bits (56), Expect = 9.6
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 352 LMNQFAKNPKQLQLISSYANQSIFAD-SV-----VHLMQSIPEFAK 391
           ++  F  + K  + I  + +++ FAD SV     +H ++ +  F+K
Sbjct: 29  VLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIH-VELMDTFSK 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,504,049
Number of extensions: 66707
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 13
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.7 bits)