BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780449|ref|YP_003064862.1| hypothetical protein
CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
(459 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 459
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/459 (100%), Positives = 459/459 (100%)
Query: 1 MNISEINKYFPPNNNIERKEIADKLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQVID 60
MNISEINKYFPPNNNIERKEIADKLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQVID
Sbjct: 1 MNISEINKYFPPNNNIERKEIADKLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQVID 60
Query: 61 ISTKVKDVAVDVAVSMIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLV 120
ISTKVKDVAVDVAVSMIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLV
Sbjct: 61 ISTKVKDVAVDVAVSMIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLV 120
Query: 121 RGGSIALKAGTAGTMIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESI 180
RGGSIALKAGTAGTMIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESI
Sbjct: 121 RGGSIALKAGTAGTMIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESI 180
Query: 181 GTKASISSTNTAEKSAISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKAL 240
GTKASISSTNTAEKSAISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKAL
Sbjct: 181 GTKASISSTNTAEKSAISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKAL 240
Query: 241 TKADPALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKM 300
TKADPALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKM
Sbjct: 241 TKADPALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKM 300
Query: 301 VPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNP 360
VPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNP
Sbjct: 301 VPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNP 360
Query: 361 KQLQLISSYANQSIFADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTT 420
KQLQLISSYANQSIFADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTT
Sbjct: 361 KQLQLISSYANQSIFADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTT 420
Query: 421 KVQAVDKIAGKPLKEYGLKISGILSPDKATELQRSFYLK 459
KVQAVDKIAGKPLKEYGLKISGILSPDKATELQRSFYLK
Sbjct: 421 KVQAVDKIAGKPLKEYGLKISGILSPDKATELQRSFYLK 459
>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 311
Score = 139 bits (350), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 179/384 (46%), Gaps = 75/384 (19%)
Query: 76 MIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLVRGGSIALKAGTAGTM 135
MIP+YGT +EFKKGNYGWG +G +SD ALL Y + LVRG SIA K T G
Sbjct: 1 MIPVYGTIQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIATTGIA 60
Query: 136 IAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESIGTKASISSTNTAEKS 195
+EA + + T++ A L KEGI + +EG S IKSES+G K IS++ ++
Sbjct: 61 TVVQEATVMTKTTQEGA---LLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQ-- 115
Query: 196 AISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIYQRGK 255
+ T+ G ++ TKA
Sbjct: 116 ---------TVTQTGNISDA---------------------TKA---------------- 129
Query: 256 IFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGL 315
S+TIK+ I++ ++AI +K+P E+ + FRDF+ L
Sbjct: 130 --SSTIKDAQSIDR----SQAIFQKMPL------------EEYPRLQKIGINYFRDFK-L 170
Query: 316 CGKNIDNQFILDLNRAS-FIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQLISSYANQSI 374
G N + +LD +RA+ FI +GKK+ D++ + +L F K+ +++QLISSYA++ I
Sbjct: 171 LGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHI 230
Query: 375 FADSVVHLMQSIPEFAKYASKSGSASKFTAKTLTNGEVAFTAKYTTKVQAVDKIAGKPLK 434
F + ++ Y S + TL + ++F AK V ++ G +
Sbjct: 231 FCKPFTKDLLNLANKNIY-QLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLN---GSLHR 286
Query: 435 EYGLKISGILSPDKATELQRSFYL 458
YG+K GILS + EL S Y+
Sbjct: 287 NYGIKAEGILSRNAPPELHFSSYV 310
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 112 GARAAINLVRGGSIALKAGTAGTMIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGS 171
G R AI + GG I ++ GT +I C +++ +K +TAL + + +I+
Sbjct: 237 GNRIAI--MEGGRI-IQCGTPQEIILHPANCYVSEFIQKLNPITALVAADVMRVCSIDDE 293
Query: 172 S 172
S
Sbjct: 294 S 294
>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 529
Score = 23.1 bits (48), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 291 INTAHSEFKMVPLSDQTL 308
INT +S K +P SDQTL
Sbjct: 304 INTLNSLLKALPNSDQTL 321
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.313 0.128 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,240
Number of Sequences: 1233
Number of extensions: 10010
Number of successful extensions: 39
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 15
length of query: 459
length of database: 328,796
effective HSP length: 77
effective length of query: 382
effective length of database: 233,855
effective search space: 89332610
effective search space used: 89332610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 40 (20.0 bits)