HHsearch alignment for GI: 254780450 and conserved domain: COG2202
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.59 E-value=2.1e-05 Score=56.02 Aligned_cols=228 Identities=20% Similarity=0.158 Sum_probs=114.2
Q ss_pred EEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCEEE
Q ss_conf 99995999389810668867099956731561100027876167899999998324323203898601000048986799
Q gi|254780450|r 40 ILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHW 119 (803)
Q Consensus 40 i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~w 119 (803)
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 73 (232)
T COG2202 2 ILVLDRDGRIIYANEAAEELLGYSAEELLG-LLLA-LHPEDRDRLRELLRRLLAGEELL------SEELRLVRKDGEERW 73 (232)
T ss_pred CEEECCCCCEEEECHHHHHHHCCCHHHHHC-CHHC-CCHHHHHHHHHHHHHHHHCCCCH------HHEEEEEECCCCEEE
T ss_conf 147716664244415568875334465531-0210-10456778889999976300000------010235413674478
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHH
Q ss_conf 99999999823788069999999783388999999999999999998525961999929996897646798642999678
Q gi|254780450|r 120 YRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTT 199 (803)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e 199 (803)
T Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~ 151 (232)
T COG2202 74 VELSAAPL-RDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEE 151 (232)
T ss_pred EEEEEEEE-ECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHH
T ss_conf 87410011-1233035555301-115778889999875799999999568967999909998999758999986979899
Q ss_pred HCCCCCCHHHHCCCHHHH-HHHHHHHHHCCCCEEEEEEEEEEEECCEE-EEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 045632188808820489-99999862002671488899998048979-9999955676538885547999998607899
Q gi|254780450|r 200 FTSKSISIGDITAGEGLA-LIQAIRTEPSHQKITTLDLDLRRIDNGHG-IPVKIVHHILASCDGKPGESRTVVVSRKNCD 277 (803)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~-~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k 277 (803)
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~ 229 (232)
T COG2202 152 ELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKD-GERVRWILSRISPVRD-DGEIVGVVGIARDITERK 229 (232)
T ss_pred HHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECC-CCEEEEEEEEECCCCC-CCCEEEEEEEEECHHHHH
T ss_conf 82776065403463046678999997524576405899999438-9799999987313246-885778999987346899
Q ss_pred HH
Q ss_conf 99
Q gi|254780450|r 278 SG 279 (803)
Q Consensus 278 ~~ 279 (803)
T Consensus 230 ~~ 231 (232)
T COG2202 230 QA 231 (232)
T ss_pred HH
T ss_conf 74