HHsearch alignment for GI: 254780450 and conserved domain: COG2202

>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.59  E-value=2.1e-05  Score=56.02  Aligned_cols=228  Identities=20%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             EEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCEEE
Q ss_conf             99995999389810668867099956731561100027876167899999998324323203898601000048986799
Q gi|254780450|r   40 ILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHW  119 (803)
Q Consensus        40 i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~w  119 (803)
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~   73 (232)
T COG2202           2 ILVLDRDGRIIYANEAAEELLGYSAEELLG-LLLA-LHPEDRDRLRELLRRLLAGEELL------SEELRLVRKDGEERW   73 (232)
T ss_pred             CEEECCCCCEEEECHHHHHHHCCCHHHHHC-CHHC-CCHHHHHHHHHHHHHHHHCCCCH------HHEEEEEECCCCEEE
T ss_conf             147716664244415568875334465531-0210-10456778889999976300000------010235413674478


Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHH
Q ss_conf             99999999823788069999999783388999999999999999998525961999929996897646798642999678
Q gi|254780450|r  120 YRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTT  199 (803)
Q Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e  199 (803)
T Consensus        74 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~  151 (232)
T COG2202          74 VELSAAPL-RDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEE  151 (232)
T ss_pred             EEEEEEEE-ECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHH
T ss_conf             87410011-1233035555301-115778889999875799999999568967999909998999758999986979899


Q ss_pred             HCCCCCCHHHHCCCHHHH-HHHHHHHHHCCCCEEEEEEEEEEEECCEE-EEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf             045632188808820489-99999862002671488899998048979-9999955676538885547999998607899
Q gi|254780450|r  200 FTSKSISIGDITAGEGLA-LIQAIRTEPSHQKITTLDLDLRRIDNGHG-IPVKIVHHILASCDGKPGESRTVVVSRKNCD  277 (803)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~-~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k  277 (803)
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~  229 (232)
T COG2202         152 ELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKD-GERVRWILSRISPVRD-DGEIVGVVGIARDITERK  229 (232)
T ss_pred             HHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECC-CCEEEEEEEEECCCCC-CCCEEEEEEEEECHHHHH
T ss_conf             82776065403463046678999997524576405899999438-9799999987313246-885778999987346899


Q ss_pred             HH
Q ss_conf             99
Q gi|254780450|r  278 SG  279 (803)
Q Consensus       278 ~~  279 (803)
T Consensus       230 ~~  231 (232)
T COG2202         230 QA  231 (232)
T ss_pred             HH
T ss_conf             74