HHsearch alignment for GI: 254780450 and conserved domain: COG3279
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].
Probab=99.11 E-value=5.2e-10 Score=88.46 Aligned_cols=112 Identities=31% Similarity=0.529 Sum_probs=91.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999769889999999999988-98999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf 51771476767999999988744211113312303178887602--5776999723765244999998615698853999
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 90678589987676057980750797999999999998
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
T Consensus 81 vt~~~~~a~~a-f-ev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 81 VTAHDEYAVAA-F-EVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred EEEHHHHHHHH-H-HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98615432333-1-334667742854268999999998