HHsearch alignment for GI: 254780450 and conserved domain: COG3279

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].
Probab=99.11  E-value=5.2e-10  Score=88.46  Aligned_cols=112  Identities=31%  Similarity=0.529  Sum_probs=91.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             6999769889999999999988-98999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r  683 IVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF  760 (803)
Q Consensus       683 ~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~  760 (803)
T Consensus         3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf   80 (244)
T COG3279           3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF   80 (244)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf             51771476767999999988744211113312303178887602--5776999723765244999998615698853999


Q ss_pred             EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             90678589987676057980750797999999999998
Q gi|254780450|r  761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL  798 (803)
Q Consensus       761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~  798 (803)
T Consensus        81 vt~~~~~a~~a-f-ev~a~d~i~kp~~~~~l~~~l~~~  116 (244)
T COG3279          81 VTAHDEYAVAA-F-EVEALDYLLKPISEERLAKTLERL  116 (244)
T ss_pred             EEEHHHHHHHH-H-HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             98615432333-1-334667742854268999999998