HHsearch alignment for GI: 254780450 and conserved domain: COG3290

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=100.00  E-value=3.4e-30  Score=230.78  Aligned_cols=315  Identities=24%  Similarity=0.314  Sum_probs=215.8

Q ss_pred             HHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCH-HHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             99999834675099985020699831554444454884-66179866661011112202466665554112334540488
Q gi|254780450|r  289 RFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTE-GDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPH  367 (803)
Q Consensus       289 rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  367 (803)
T Consensus       216 er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~~~--l~~vl~---~~~~-~~~~e~--  287 (537)
T COG3290         216 ERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDSD--LPEVLE---TGKP-QHDEEI--  287 (537)
T ss_pred             HHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC--CHHHHH---CCCC-CCCHHH--
T ss_conf             99999987636289987898576112889998465676756446610376156367--577875---0776-311344--


Q ss_pred             ECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             73885068999987304566776138999998502321122101234444446876303425664158999999999985
Q gi|254780450|r  368 PQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLL  447 (803)
Q Consensus       368 ~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~  447 (803)
T Consensus       288 -~~ng~~~--i~nr~pI~-~~~~~~GaI~tFRdktei~~L~eqLt~vr~y---a~aLRaq~HEfmNkLhtI~GLlql~--  358 (537)
T COG3290         288 -RINGRLL--VANRVPIR-SGGQIVGAIITFRDKTEIKKLTEQLTGVRQY---AEALRAQSHEFMNKLHTILGLLQLG--  358 (537)
T ss_pred             -HCCCEEE--EEEECCEE-ECCEEEEEEEEEECHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf             -1477599--99852378-8897768999876377899999999989999---9999885288888899998788505--


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHCCCCCEEEEEECCCCCEE-
Q ss_conf             079984788889999999888876430045421200584358534678999-999998750356816999814897226-
Q gi|254780450|r  448 QSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGN-LRMMIQKLISEPPQVKLTVDYERDLWG-  525 (803)
Q Consensus       448 ~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-  525 (803)
T Consensus       359 ---~yd~a~~~I~~~~~~qq~---~~~~l~-----~~i~~------~~lAg~LlgK~~rAr--Elgv~l~Id~~S~l~~~  419 (537)
T COG3290         359 ---EYDDALDYIQQESEEQQE---LIDSLS-----EKIKD------PVLAGFLLGKISRAR--ELGVSLIIDPNSQLPQL  419 (537)
T ss_pred             ---CHHHHHHHHHHHHHHHHH---HHHHHH-----HHCCC------HHHHHHHHHHHHHHH--HCCCEEEECCCCCCCCC
T ss_conf             ---378999999998764045---689999-----85120------888999886899999--72965997579867889


Q ss_pred             -EEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCC
Q ss_conf             -99871699999999874227652067-8857999998504210122455667889789999997886688445420232
Q gi|254780450|r  526 -VKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFE  603 (803)
Q Consensus       526 -v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFe  603 (803)
T Consensus       420 p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~---------------~~~~~lvieV~D~G~GI~~~~~~~iFe  484 (537)
T COG3290         420 PSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS---------------DRGDELVIEVADTGPGIPPEVRDKIFE  484 (537)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE---------------ECCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             87667678999999988778888515578967999998---------------369879999957999989688777873


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf             2221013577653038899999851675499996188942999994375766
Q gi|254780450|r  604 PFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQE  655 (803)
Q Consensus       604 pF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~  655 (803)
T Consensus       485 ~G~Stk~~-~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~~  535 (537)
T COG3290         485 KGVSTKNT-GGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKER  535 (537)
T ss_pred             CCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf             48414677-8876128899999987496699950789814999988887665