HHsearch alignment for GI: 254780450 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=100.00 E-value=3.4e-30 Score=230.78 Aligned_cols=315 Identities=24% Similarity=0.314 Sum_probs=215.8
Q ss_pred HHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCH-HHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99999834675099985020699831554444454884-66179866661011112202466665554112334540488
Q gi|254780450|r 289 RFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTE-GDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPH 367 (803)
Q Consensus 289 rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 367 (803)
T Consensus 216 er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~~~--l~~vl~---~~~~-~~~~e~-- 287 (537)
T COG3290 216 ERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDSD--LPEVLE---TGKP-QHDEEI-- 287 (537)
T ss_pred HHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC--CHHHHH---CCCC-CCCHHH--
T ss_conf 99999987636289987898576112889998465676756446610376156367--577875---0776-311344--
Q ss_pred ECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73885068999987304566776138999998502321122101234444446876303425664158999999999985
Q gi|254780450|r 368 PQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLL 447 (803)
Q Consensus 368 ~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~ 447 (803)
T Consensus 288 -~~ng~~~--i~nr~pI~-~~~~~~GaI~tFRdktei~~L~eqLt~vr~y---a~aLRaq~HEfmNkLhtI~GLlql~-- 358 (537)
T COG3290 288 -RINGRLL--VANRVPIR-SGGQIVGAIITFRDKTEIKKLTEQLTGVRQY---AEALRAQSHEFMNKLHTILGLLQLG-- 358 (537)
T ss_pred -HCCCEEE--EEEECCEE-ECCEEEEEEEEEECHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf -1477599--99852378-8897768999876377899999999989999---9999885288888899998788505--
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHCCCCCEEEEEECCCCCEE-
Q ss_conf 079984788889999999888876430045421200584358534678999-999998750356816999814897226-
Q gi|254780450|r 448 QSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGN-LRMMIQKLISEPPQVKLTVDYERDLWG- 525 (803)
Q Consensus 448 ~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~- 525 (803)
T Consensus 359 ---~yd~a~~~I~~~~~~qq~---~~~~l~-----~~i~~------~~lAg~LlgK~~rAr--Elgv~l~Id~~S~l~~~ 419 (537)
T COG3290 359 ---EYDDALDYIQQESEEQQE---LIDSLS-----EKIKD------PVLAGFLLGKISRAR--ELGVSLIIDPNSQLPQL 419 (537)
T ss_pred ---CHHHHHHHHHHHHHHHHH---HHHHHH-----HHCCC------HHHHHHHHHHHHHHH--HCCCEEEECCCCCCCCC
T ss_conf ---378999999998764045---689999-----85120------888999886899999--72965997579867889
Q ss_pred -EEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCC
Q ss_conf -99871699999999874227652067-8857999998504210122455667889789999997886688445420232
Q gi|254780450|r 526 -VKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFE 603 (803)
Q Consensus 526 -v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFe 603 (803)
T Consensus 420 p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~---------------~~~~~lvieV~D~G~GI~~~~~~~iFe 484 (537)
T COG3290 420 PSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS---------------DRGDELVIEVADTGPGIPPEVRDKIFE 484 (537)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE---------------ECCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 87667678999999988778888515578967999998---------------369879999957999989688777873
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 2221013577653038899999851675499996188942999994375766
Q gi|254780450|r 604 PFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQE 655 (803)
Q Consensus 604 pF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~ 655 (803)
T Consensus 485 ~G~Stk~~-~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~~ 535 (537)
T COG3290 485 KGVSTKNT-GGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKER 535 (537)
T ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 48414677-8876128899999987496699950789814999988887665