HHsearch alignment for GI: 254780450 and conserved domain: COG3852

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=100.00  E-value=1.4e-44  Score=332.25  Aligned_cols=343  Identities=23%  Similarity=0.295  Sum_probs=266.6

Q ss_pred             HHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-C
Q ss_conf             999834675099985020699831554444454884661798666610111122024666655541123345404887-3
Q gi|254780450|r  291 NRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHP-Q  369 (803)
Q Consensus       291 ~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~  369 (803)
T Consensus        10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~-~~Sa~~L~~~~l~~l~~~g--s~ll~ll~q~~~~~~~~~~~~v~l~~~   86 (363)
T COG3852          10 GAILNNLINPVLLVDDELAIHYANPAAEQLL-AVSARRLAGTRLSELLPFG--SLLLSLLDQVLERGQPVTEYEVTLVIL   86 (363)
T ss_pred             HHHHHCCCCCEEEECCCCCEEECCHHHHHHH-HHHHHHHHCCCHHHHCCCC--CHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             7687455785699827782896088899999-9778888248778871777--288999989998358851010244207


Q ss_pred             CCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             88506899998730456677613899999850232112210123444444687630342566415899999999998507
Q gi|254780450|r  370 DENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS  449 (803)
Q Consensus       370 ~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~  449 (803)
T Consensus        87 g~~~~v~~~v~~v~~--~~G---~vlle~~~~~~~~ridre~~q~a~~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l  161 (363)
T COG3852          87 GRSHIVDLTVAPVPE--EPG---SVLLEFHPRDMQRRLDREQTQHAQQRAVKGLVRGLAHEIKNPLGGIRGAAQLLERAL  161 (363)
T ss_pred             CCCCEEEEEEEECCC--CCC---EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             865237899862268--997---489995325777676699998888889999998778872285310144999997458


Q ss_pred             CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEE
Q ss_conf             99847-88889999999888876430045421200584358534678999999998750356816999814897226998
Q gi|254780450|r  450 RSSDA-SFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKT  528 (803)
Q Consensus       450 ~~~~~-~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~  528 (803)
T Consensus       162 --pd~~~~~lt~lIieE~DRl~~LVDRme~~~~~rp~~r~~~NIH~VLerV~~lv~~e~--~~~i~l~rdYDPSLP~v~~  237 (363)
T COG3852         162 --PDEALRELTQLIIEEADRLRNLVDRLEVLGPQRPGDRVPVNIHEVLERVRALVEAEF--ADNVRLIRDYDPSLPEVLG  237 (363)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCC
T ss_conf             --986778999999999999999999987508789855354319999999999985436--7755885027998853236


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf             7169999999987422765206--78857999998504210122455667889789999997886688445420232222
Q gi|254780450|r  529 DLSQFEQVLVNLCVNAHHAIML--KESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF  606 (803)
Q Consensus       529 D~~~l~qvl~NLl~NA~~A~~~--~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~  606 (803)
T Consensus       238 d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~-----i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~V  312 (363)
T COG3852         238 DRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLT-----IAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMV  312 (363)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE-----CCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCC
T ss_conf             98999999999999999971677877856999722425887-----1674246631169861899998678643002302


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf             10135776530388999998516754999961889429999943757
Q gi|254780450|r  607 TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV  653 (803)
Q Consensus       607 ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~  653 (803)
T Consensus       313 s~r~--~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~  356 (363)
T COG3852         313 SGRE--GGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK  356 (363)
T ss_pred             CCCC--CCCCCCHHHHHHHHHHCCCEEEEECCCC-CEEEEEEEECCC
T ss_conf             0688--9866148999998985297898742689-458999863354