HHsearch alignment for GI: 254780450 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=100.00 E-value=1.4e-44 Score=332.25 Aligned_cols=343 Identities=23% Similarity=0.295 Sum_probs=266.6
Q ss_pred HHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-C
Q ss_conf 999834675099985020699831554444454884661798666610111122024666655541123345404887-3
Q gi|254780450|r 291 NRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHP-Q 369 (803)
Q Consensus 291 ~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~ 369 (803)
T Consensus 10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~-~~Sa~~L~~~~l~~l~~~g--s~ll~ll~q~~~~~~~~~~~~v~l~~~ 86 (363)
T COG3852 10 GAILNNLINPVLLVDDELAIHYANPAAEQLL-AVSARRLAGTRLSELLPFG--SLLLSLLDQVLERGQPVTEYEVTLVIL 86 (363)
T ss_pred HHHHHCCCCCEEEECCCCCEEECCHHHHHHH-HHHHHHHHCCCHHHHCCCC--CHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 7687455785699827782896088899999-9778888248778871777--288999989998358851010244207
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88506899998730456677613899999850232112210123444444687630342566415899999999998507
Q gi|254780450|r 370 DENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS 449 (803)
Q Consensus 370 ~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~ 449 (803)
T Consensus 87 g~~~~v~~~v~~v~~--~~G---~vlle~~~~~~~~ridre~~q~a~~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l 161 (363)
T COG3852 87 GRSHIVDLTVAPVPE--EPG---SVLLEFHPRDMQRRLDREQTQHAQQRAVKGLVRGLAHEIKNPLGGIRGAAQLLERAL 161 (363)
T ss_pred CCCCEEEEEEEECCC--CCC---EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 865237899862268--997---489995325777676699998888889999998778872285310144999997458
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99847-88889999999888876430045421200584358534678999999998750356816999814897226998
Q gi|254780450|r 450 RSSDA-SFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKT 528 (803)
Q Consensus 450 ~~~~~-~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~ 528 (803)
T Consensus 162 --pd~~~~~lt~lIieE~DRl~~LVDRme~~~~~rp~~r~~~NIH~VLerV~~lv~~e~--~~~i~l~rdYDPSLP~v~~ 237 (363)
T COG3852 162 --PDEALRELTQLIIEEADRLRNLVDRLEVLGPQRPGDRVPVNIHEVLERVRALVEAEF--ADNVRLIRDYDPSLPEVLG 237 (363)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCC
T ss_conf --986778999999999999999999987508789855354319999999999985436--7755885027998853236
Q ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 7169999999987422765206--78857999998504210122455667889789999997886688445420232222
Q gi|254780450|r 529 DLSQFEQVLVNLCVNAHHAIML--KESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF 606 (803)
Q Consensus 529 D~~~l~qvl~NLl~NA~~A~~~--~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ 606 (803)
T Consensus 238 d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~-----i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~V 312 (363)
T COG3852 238 DRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLT-----IAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMV 312 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE-----CCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCC
T ss_conf 98999999999999999971677877856999722425887-----1674246631169861899998678643002302
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 10135776530388999998516754999961889429999943757
Q gi|254780450|r 607 TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 607 ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
T Consensus 313 s~r~--~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 313 SGRE--GGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCCC--CCCCCCHHHHHHHHHHCCCEEEEECCCC-CEEEEEEEECCC
T ss_conf 0688--9866148999998985297898742689-458999863354