HHsearch alignment for GI: 254780450 and conserved domain: COG3920
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.58 E-value=1.5e-12 Score=106.39 Aligned_cols=210 Identities=22% Similarity=0.280 Sum_probs=139.1
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 85023211221012344444468763034256641589999999999850799847888899999998888--7643004
Q gi|254780450|r 399 VEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRA--AILVRQL 476 (803)
Q Consensus 399 ~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~--~~li~~l 476 (803)
T Consensus 2 ~~~~~~~~~e~~~~~~~~----~~ll~Ei~HRVKNnLqiIsSll~lq~r~--~~~~~~e~---~~~~~~Ri~sla~~He~ 72 (221)
T COG3920 2 LLTTARKETEERLAESEK----ELLLREIHHRVKNNLQIISSLLRLQARK--FEDEVLEA---LRESQNRIQSLALIHEL 72 (221)
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 047888889999999989----9999999999887999999999977752--36678999---99998899999999999
Q ss_pred HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECH-HHHHHHHHHHHHHH-HHHHCCCCCC
Q ss_conf 542120058435853467899999999875035681699981489722699871-69999999987422-7652067885
Q gi|254780450|r 477 LAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDL-SQFEQVLVNLCVNA-HHAIMLKESG 554 (803)
Q Consensus 477 Ld~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~-~~l~qvl~NLl~NA-~~A~~~~~~G 554 (803)
T Consensus 73 L~~s-----~~~~~~~~~y~~~L~~~l~~~~-~~~~~~~~~~~~~~~-~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G 145 (221)
T COG3920 73 LYKS-----GDDTWDFASYLELLASNLFPSY-GGKDIRLILDSGPNV-FLDPDTAVPLGLIVHELVTNALKHAFLSRPGG 145 (221)
T ss_pred HCCC-----CCCCCCHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCE-EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8068-----8651759999999999988762-788752788228862-26736788999999999998898617888997
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCEE
Q ss_conf 799999850421012245566788978999999788668844542023222210135776530388999998-5167549
Q gi|254780450|r 555 SLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGII-RQSGGYI 633 (803)
Q Consensus 555 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv-~~~gG~i 633 (803)
T Consensus 146 ~I~I~~~~~~~~-------------~~~~l~v~deg~G~~~~~~------------~-~~~g~G~~Lv~~lv~~q~~g~~ 199 (221)
T COG3920 146 EIRITLSREGDG-------------GRFLLTVWDEGGGPPVEAP------------L-SRGGFGLQLVERLVPEQLGGEL 199 (221)
T ss_pred EEEEEEEECCCC-------------CEEEEEEEECCCCCCCCCC------------C-CCCCCHHHHHHHHHHHHCCCEE
T ss_conf 799999984799-------------7179999878989888888------------7-8998379999999999679727
Q ss_pred EEEECCCCCEEEEEEECCC
Q ss_conf 9996188942999994375
Q gi|254780450|r 634 LPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 634 ~v~S~~g~Gt~F~i~lP~~ 652 (803)
T Consensus 200 ~~~~~--~Gt~~~i~~~~~ 216 (221)
T COG3920 200 EDERP--DGTEFRLRFPLS 216 (221)
T ss_pred EEECC--CCEEEEEEEECC
T ss_conf 99749--977999998864