HHsearch alignment for GI: 254780450 and conserved domain: COG4251
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].
Probab=100.00 E-value=1.1e-35 Score=269.49 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=173.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHH
Q ss_conf 68763034256641589999999999850--79984788889999999888876430045421200584--358534678
Q gi|254780450|r 420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQ--SRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR--LTVLNLTEV 495 (803)
Q Consensus 420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~--~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~--~~~~~l~~~ 495 (803)
T Consensus 524 l~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l~~td~~~v 603 (750)
T COG4251 524 LRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPLQPTDVQKV 603 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 99999986104667999999999766634366657588999999999999999999977423120554577777526789
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEECCCCCCCCCCC
Q ss_conf 99999999875035681699981489722699871699999999874227652067885--7999998504210122455
Q gi|254780450|r 496 IGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG--SLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 496 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G--~v~i~~~~~~~~~~~~~~~ 573 (803)
T Consensus 604 v~~vl~~l~~ri~d-tgaei~i~--~-lp~v~~d~~~l~qv~~NLi~N---aik~~~~e~~~i~I~~~r----------- 665 (750)
T COG4251 604 VDKVLLELSQRIAD-TGAEIRIA--P-LPVVAADATQLGQVFQNLIAN---AIKFGGPENPDIEISAER----------- 665 (750)
T ss_pred HHHHHHHCCCCCCC-CCCEEEEC--C-CCEEECCHHHHHHHHHHHHHH---HEECCCCCCCCEEEEEEC-----------
T ss_conf 99999734531125-65247862--5-644640888999999998765---521078889815885332-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 6678897899999978866884454202322221--01357765303889999985167549999618894299999437
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT--TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t--tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
T Consensus 666 ----~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~ 741 (750)
T COG4251 666 ----QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPV 741 (750)
T ss_pred ----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEC
T ss_conf ----5873079854787776989998889988703756551477733899999999848458886047874168998405
Q ss_pred CCCC
Q ss_conf 5766
Q gi|254780450|r 652 YVQE 655 (803)
Q Consensus 652 ~~~~ 655 (803)
T Consensus 742 ~~~e 745 (750)
T COG4251 742 GGEE 745 (750)
T ss_pred CCCC
T ss_conf 8867