HHsearch alignment for GI: 254780450 and conserved domain: COG4251

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].
Probab=100.00  E-value=1.1e-35  Score=269.49  Aligned_cols=214  Identities=25%  Similarity=0.336  Sum_probs=173.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHH
Q ss_conf             68763034256641589999999999850--79984788889999999888876430045421200584--358534678
Q gi|254780450|r  420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQ--SRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR--LTVLNLTEV  495 (803)
Q Consensus       420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~--~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~--~~~~~l~~~  495 (803)
T Consensus       524 l~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l~~td~~~v  603 (750)
T COG4251         524 LRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPLQPTDVQKV  603 (750)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             99999986104667999999999766634366657588999999999999999999977423120554577777526789


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEECCCCCCCCCCC
Q ss_conf             99999999875035681699981489722699871699999999874227652067885--7999998504210122455
Q gi|254780450|r  496 IGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG--SLTVRTRNIPSTEIHTFNY  573 (803)
Q Consensus       496 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G--~v~i~~~~~~~~~~~~~~~  573 (803)
T Consensus       604 v~~vl~~l~~ri~d-tgaei~i~--~-lp~v~~d~~~l~qv~~NLi~N---aik~~~~e~~~i~I~~~r-----------  665 (750)
T COG4251         604 VDKVLLELSQRIAD-TGAEIRIA--P-LPVVAADATQLGQVFQNLIAN---AIKFGGPENPDIEISAER-----------  665 (750)
T ss_pred             HHHHHHHCCCCCCC-CCCEEEEC--C-CCEEECCHHHHHHHHHHHHHH---HEECCCCCCCCEEEEEEC-----------
T ss_conf             99999734531125-65247862--5-644640888999999998765---521078889815885332-----------


Q ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf             6678897899999978866884454202322221--01357765303889999985167549999618894299999437
Q gi|254780450|r  574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT--TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR  651 (803)
Q Consensus       574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t--tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~  651 (803)
T Consensus       666 ----~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~  741 (750)
T COG4251         666 ----QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPV  741 (750)
T ss_pred             ----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEC
T ss_conf             ----5873079854787776989998889988703756551477733899999999848458886047874168998405


Q ss_pred             CCCC
Q ss_conf             5766
Q gi|254780450|r  652 YVQE  655 (803)
Q Consensus       652 ~~~~  655 (803)
T Consensus       742 ~~~e  745 (750)
T COG4251         742 GGEE  745 (750)
T ss_pred             CCCC
T ss_conf             8867