HHsearch alignment for GI: 254780450 and conserved domain: COG5000

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].

Probab=97.76  E-value=0.0024  Score=41.50  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             HHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC
Q ss_conf             99852596199992999689764679864299967804563218880882048999999862002671488899998048
Q gi|254780450|r  164 DYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDN  243 (803)
Q Consensus       164 ~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  243 (803)
T Consensus       374 ~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~ls--a-~ap~~~~vf~~~~a~~--~~~~~~ev~~~r~g~  448 (712)
T COG5000         374 AVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLS--A-IAPELEEVFAEAGAAA--RTDKRVEVKLAREGE  448 (712)
T ss_pred             HHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHH--H-HHHHHHHHHHHHHHHC--CCCCCEEEECCCCCC
T ss_conf             9981585038997478707762601788846870676440266--4-2137899999765403--877420100014787


Q ss_pred             CEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHH
Q ss_conf             9799999955676538885547999998607899999999
Q gi|254780450|r  244 GHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSG  283 (803)
Q Consensus       244 g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l  283 (803)
T Consensus       449 ~rtl~Vq~t~~~~---d-~~~gyVvt~DDITdLV~AQRs~  484 (712)
T COG5000         449 ERTLNVQATREPE---D-NGNGYVVTFDDITDLVIAQRSA  484 (712)
T ss_pred             CEEEEEEEEECCC---C-CCCCEEEEECCHHHHHHHHHHH
T ss_conf             4156667532144---4-6885699963508999999987