HHsearch alignment for GI: 254780450 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=98.48 E-value=1.4e-05 Score=57.26 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=99.9
Q ss_pred EEECHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH
Q ss_conf 97833889-99999999999999998525961999929996897646798642999678045632188808820489999
Q gi|254780450|r 142 ITDITSER-KDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ 220 (803)
Q Consensus 142 i~DIT~~k-~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (803)
T Consensus 92 fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~--i~elL~i~d~y~~~ 169 (459)
T COG5002 92 FNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRS--ILELLKIEDTYTFE 169 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCC--HHHHHCCCCCEEHH
T ss_conf 9789999999987678888889989998707657645778689935079998486778771653--78885775430288
Q ss_pred HHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 99862002671488899998048979999995567653888554799999860789999999999
Q gi|254780450|r 221 AIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTI 285 (803)
Q Consensus 221 ~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~ 285 (803)
T Consensus 170 dL~e~-----~~s--~lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe 227 (459)
T COG5002 170 DLVEK-----NDS--LLLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE 227 (459)
T ss_pred HHHHC-----CCC--EEEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 88725-----982--89860478863799998888851146644069987314387888999999