HHsearch alignment for GI: 254780450 and conserved domain: COG5002

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=98.48  E-value=1.4e-05  Score=57.26  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=99.9

Q ss_pred             EEECHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH
Q ss_conf             97833889-99999999999999998525961999929996897646798642999678045632188808820489999
Q gi|254780450|r  142 ITDITSER-KDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ  220 (803)
Q Consensus       142 i~DIT~~k-~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~  220 (803)
T Consensus        92 fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~--i~elL~i~d~y~~~  169 (459)
T COG5002          92 FNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRS--ILELLKIEDTYTFE  169 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCC--HHHHHCCCCCEEHH
T ss_conf             9789999999987678888889989998707657645778689935079998486778771653--78885775430288


Q ss_pred             HHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf             99862002671488899998048979999995567653888554799999860789999999999
Q gi|254780450|r  221 AIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTI  285 (803)
Q Consensus       221 ~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~  285 (803)
T Consensus       170 dL~e~-----~~s--~lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe  227 (459)
T COG5002         170 DLVEK-----NDS--LLLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE  227 (459)
T ss_pred             HHHHC-----CCC--EEEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf             88725-----982--89860478863799998888851146644069987314387888999999