HHsearch alignment for GI: 254780450 and conserved domain: PRK09835

>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00  E-value=7.1e-44  Score=327.14  Aligned_cols=213  Identities=27%  Similarity=0.422  Sum_probs=172.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHH
Q ss_conf             446876303425664158999999999985079984788889999999888876430045421200584----3585346
Q gi|254780450|r  418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLT  493 (803)
Q Consensus       418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~  493 (803)
T Consensus       260 ~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~~~~~~~~dl~  339 (482)
T PRK09835        260 TRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLA  339 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf             99999999988987189999999999985389986999999999999999999999999998774358876667345699


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf             7899999999875035681699981489722699871699999999874227652067-885799999850421012245
Q gi|254780450|r  494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFN  572 (803)
Q Consensus       494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~  572 (803)
T Consensus       340 ~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NA---ikys~~g~~i~i~~~~----------  403 (482)
T PRK09835        340 DEVGKVFDFFEALA-EDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNA---LRYTPEGEAIVVRCQT----------  403 (482)
T ss_pred             HHHHHHHHHHHHHH-HHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE----------
T ss_conf             99999999999999-86892899827--87089987999999999999999---9848999869999998----------


Q ss_pred             CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC----CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf             5667889789999997886688445420232222101----357765303889999985167549999618894299999
Q gi|254780450|r  573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK----KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF  648 (803)
Q Consensus       573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk----~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~  648 (803)
T Consensus       404 -----~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~  477 (482)
T PRK09835        404 -----VDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVIS  477 (482)
T ss_pred             -----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEE
T ss_conf             -----29989999996587889899987667975189888899994648999999999982998999963-991899999


Q ss_pred             ECCC
Q ss_conf             4375
Q gi|254780450|r  649 LPRY  652 (803)
Q Consensus       649 lP~~  652 (803)
T Consensus       478 lPr~  481 (482)
T PRK09835        478 LPRL  481 (482)
T ss_pred             EECC
T ss_conf             3078