HHsearch alignment for GI: 254780450 and conserved domain: PRK09835
>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00 E-value=7.1e-44 Score=327.14 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=172.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHH
Q ss_conf 446876303425664158999999999985079984788889999999888876430045421200584----3585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~ 493 (803)
T Consensus 260 ~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~~~~~~~~dl~ 339 (482)
T PRK09835 260 TRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLA 339 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 99999999988987189999999999985389986999999999999999999999999998774358876667345699
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 7899999999875035681699981489722699871699999999874227652067-885799999850421012245
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~ 572 (803)
T Consensus 340 ~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NA---ikys~~g~~i~i~~~~---------- 403 (482)
T PRK09835 340 DEVGKVFDFFEALA-EDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNA---LRYTPEGEAIVVRCQT---------- 403 (482)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE----------
T ss_conf 99999999999999-86892899827--87089987999999999999999---9848999869999998----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC----CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 5667889789999997886688445420232222101----357765303889999985167549999618894299999
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK----KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk----~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
T Consensus 404 -----~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~ 477 (482)
T PRK09835 404 -----VDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVIS 477 (482)
T ss_pred -----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEE
T ss_conf -----29989999996587889899987667975189888899994648999999999982998999963-991899999
Q ss_pred ECCC
Q ss_conf 4375
Q gi|254780450|r 649 LPRY 652 (803)
Q Consensus 649 lP~~ 652 (803)
T Consensus 478 lPr~ 481 (482)
T PRK09835 478 LPRL 481 (482)
T ss_pred EECC
T ss_conf 3078