HHsearch alignment for GI: 254780450 and conserved domain: PRK09836

>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.90  E-value=2e-22  Score=176.02  Aligned_cols=117  Identities=22%  Similarity=0.368  Sum_probs=106.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r  683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS  762 (803)
Q Consensus       683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t  762 (803)
T Consensus         2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~--~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lt   79 (226)
T PRK09836          2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLT   79 (226)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf             899993999999999999987899999989999999998518--999999889999998720435677616796099994


Q ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf             678589987676057980750797999999999998513
Q gi|254780450|r  763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS  801 (803)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~  801 (803)
T Consensus        80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr  118 (226)
T PRK09836         80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR  118 (226)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             458988999999769968863687679999999999662