HHsearch alignment for GI: 254780450 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.90 E-value=2e-22 Score=176.02 Aligned_cols=117 Identities=22% Similarity=0.368 Sum_probs=106.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~--~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lt 79 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLT 79 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 899993999999999999987899999989999999998518--999999889999998720435677616796099994
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr 118 (226)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (226)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 458988999999769968863687679999999999662