HHsearch alignment for GI: 254780450 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.57  E-value=9.5e-14  Score=114.83  Aligned_cols=120  Identities=8%  Similarity=0.078  Sum_probs=101.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCCE
Q ss_conf             875699976988999999999998898999989989998999865999548998587889888999999-9986899829
Q gi|254780450|r  680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRE-LRKTYPSLKF  758 (803)
Q Consensus       680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~-ir~~~~~~~i  758 (803)
T Consensus         9 ~g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~--~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kV   84 (216)
T PRK10100          9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--S--SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI   84 (216)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--C--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             683899955842999999998898764763024776677644--7--999899848878830899999999725999779


Q ss_pred             EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf             999067858998767605798075079799999999999851379
Q gi|254780450|r  759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSDS  803 (803)
Q Consensus       759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~~  803 (803)
T Consensus        85 liLTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~  129 (216)
T PRK10100         85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC  129 (216)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             999688748999999765876676689999999999999987997