HHsearch alignment for GI: 254780450 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.57 E-value=9.5e-14 Score=114.83 Aligned_cols=120 Identities=8% Similarity=0.078 Sum_probs=101.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCCE
Q ss_conf 875699976988999999999998898999989989998999865999548998587889888999999-9986899829
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRE-LRKTYPSLKF 758 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~-ir~~~~~~~i 758 (803)
T Consensus 9 ~g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~--~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kV 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--S--SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--C--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 683899955842999999998898764763024776677644--7--999899848878830899999999725999779
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 999067858998767605798075079799999999999851379
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSDS 803 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~~ 803 (803)
T Consensus 85 liLTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~ 129 (216)
T PRK10100 85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 999688748999999765876676689999999999999987997