HHsearch alignment for GI: 254780450 and conserved domain: PRK10161
>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=99.89 E-value=5.6e-22 Score=172.85 Aligned_cols=118 Identities=20% Similarity=0.361 Sum_probs=105.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCE
Q ss_conf 756999769889999999999988989999899899989998659995489985878898889999999986--899829
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPSLKF 758 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~~~i 758 (803)
T Consensus 2 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~--~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PI 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 97199995999999999999997799999989999999998528--9989999789988763358788775024689758
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 999067858998767605798075079799999999999851
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
T Consensus 80 I~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lr 121 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999556665779999876987652089998999999999971