HHsearch alignment for GI: 254780450 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.71 E-value=8.6e-16 Score=129.24 Aligned_cols=115 Identities=29% Similarity=0.365 Sum_probs=102.2
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699976988999999999998-898999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLET-RGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~-~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
T Consensus 3 ~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~--~~dvvllD~~mp~~~g~~~~~~l~---~~~~viv 77 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP---KGMATIM 77 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHH---CCCCEEE
T ss_conf 99998797999999999981299959999989999999988744--999999878878862077999984---3874899
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 906785899876760579807507979999999999985137
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
T Consensus 78 ls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 973075999999997599889977899999999999998699